Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062721.t1 | XP_013466045.1 | 97.5 | 367 | 9 | 0 | 1 | 367 | 1 | 367 | 1.00E-208 | 735.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062721.t1 | Q9LN68 | 71.9 | 359 | 87 | 3 | 11 | 367 | 5 | 351 | 6.9e-145 | 515.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062721.t1 | A0A072VDI5 | 97.5 | 367 | 9 | 0 | 1 | 367 | 1 | 367 | 7.5e-209 | 735.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049227 | MS.gene062721 | 0.812645 | 3.82E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene062721 | MS.gene060376 | PPI |
| MS.gene062721 | MS.gene035252 | PPI |
| MS.gene062721 | MS.gene036565 | PPI |
| MS.gene041483 | MS.gene062721 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062721.t1 | MTR_1g021855 | 97.548 | 367 | 9 | 0 | 1 | 367 | 1 | 367 | 0.0 | 742 |
| MS.gene062721.t1 | MTR_5g019220 | 76.506 | 332 | 67 | 3 | 46 | 367 | 37 | 367 | 0.0 | 530 |
| MS.gene062721.t1 | MTR_3g111600 | 86.525 | 282 | 37 | 1 | 86 | 367 | 1 | 281 | 0.0 | 516 |
| MS.gene062721.t1 | MTR_8g078240 | 73.860 | 329 | 77 | 4 | 40 | 366 | 23 | 344 | 0.0 | 513 |
| MS.gene062721.t1 | MTR_3g092310 | 62.145 | 317 | 101 | 4 | 46 | 360 | 34 | 333 | 3.74e-147 | 420 |
| MS.gene062721.t1 | MTR_6g008900 | 55.432 | 359 | 141 | 6 | 10 | 358 | 10 | 359 | 2.75e-140 | 403 |
| MS.gene062721.t1 | MTR_4g071620 | 55.432 | 359 | 141 | 6 | 10 | 358 | 10 | 359 | 2.75e-140 | 403 |
| MS.gene062721.t1 | MTR_7g094230 | 59.048 | 315 | 108 | 2 | 46 | 360 | 51 | 344 | 2.64e-138 | 397 |
| MS.gene062721.t1 | MTR_7g109210 | 54.775 | 356 | 137 | 6 | 12 | 358 | 10 | 350 | 3.26e-137 | 395 |
| MS.gene062721.t1 | MTR_5g036580 | 55.072 | 345 | 142 | 5 | 20 | 360 | 25 | 360 | 4.14e-136 | 394 |
| MS.gene062721.t1 | MTR_4g118030 | 58.675 | 317 | 112 | 4 | 46 | 361 | 42 | 340 | 7.65e-135 | 389 |
| MS.gene062721.t1 | MTR_1g089820 | 58.466 | 313 | 109 | 2 | 46 | 358 | 54 | 345 | 1.32e-132 | 383 |
| MS.gene062721.t1 | MTR_2g461670 | 32.642 | 193 | 118 | 6 | 165 | 356 | 395 | 576 | 5.36e-21 | 94.7 |
| MS.gene062721.t1 | MTR_4g109890 | 33.161 | 193 | 117 | 6 | 165 | 356 | 340 | 521 | 3.57e-20 | 92.4 |
| MS.gene062721.t1 | MTR_3g107930 | 26.778 | 239 | 160 | 6 | 130 | 363 | 352 | 580 | 8.99e-19 | 88.2 |
| MS.gene062721.t1 | MTR_3g107930 | 26.778 | 239 | 160 | 6 | 130 | 363 | 429 | 657 | 9.05e-19 | 88.2 |
| MS.gene062721.t1 | MTR_2g082650 | 30.151 | 199 | 122 | 8 | 165 | 356 | 209 | 397 | 5.06e-18 | 85.1 |
| MS.gene062721.t1 | MTR_2g015550 | 29.412 | 221 | 147 | 6 | 130 | 349 | 303 | 515 | 5.38e-18 | 85.9 |
| MS.gene062721.t1 | MTR_2g082650 | 30.151 | 199 | 122 | 8 | 165 | 356 | 338 | 526 | 1.07e-17 | 84.7 |
| MS.gene062721.t1 | MTR_8g092000 | 29.444 | 180 | 114 | 5 | 165 | 341 | 384 | 553 | 1.73e-17 | 84.3 |
| MS.gene062721.t1 | MTR_7g055600 | 28.643 | 199 | 132 | 6 | 165 | 363 | 238 | 426 | 3.85e-16 | 79.7 |
| MS.gene062721.t1 | MTR_7g057530 | 28.643 | 199 | 132 | 6 | 165 | 363 | 238 | 426 | 3.85e-16 | 79.7 |
| MS.gene062721.t1 | MTR_2g027740 | 29.444 | 180 | 114 | 5 | 165 | 341 | 471 | 640 | 5.31e-16 | 79.7 |
| MS.gene062721.t1 | MTR_7g075840 | 27.136 | 199 | 135 | 5 | 165 | 363 | 468 | 656 | 8.75e-16 | 79.3 |
| MS.gene062721.t1 | MTR_7g012370 | 28.571 | 182 | 116 | 6 | 165 | 339 | 334 | 508 | 9.90e-16 | 79.0 |
| MS.gene062721.t1 | MTR_4g133570 | 29.648 | 199 | 123 | 8 | 165 | 356 | 261 | 449 | 1.69e-15 | 77.8 |
| MS.gene062721.t1 | MTR_6g016380 | 28.646 | 192 | 127 | 6 | 165 | 356 | 359 | 540 | 1.78e-14 | 75.1 |
| MS.gene062721.t1 | MTR_8g033360 | 27.419 | 186 | 126 | 4 | 130 | 310 | 397 | 578 | 2.80e-14 | 74.7 |
| MS.gene062721.t1 | MTR_7g096160 | 24.252 | 301 | 184 | 12 | 64 | 345 | 356 | 631 | 5.57e-14 | 73.6 |
| MS.gene062721.t1 | MTR_3g452360 | 21.519 | 316 | 189 | 10 | 86 | 356 | 65 | 366 | 6.54e-14 | 72.8 |
| MS.gene062721.t1 | MTR_3g452360 | 25.728 | 206 | 125 | 7 | 165 | 356 | 324 | 515 | 1.16e-13 | 72.4 |
| MS.gene062721.t1 | MTR_6g013840 | 28.947 | 114 | 73 | 3 | 245 | 356 | 410 | 517 | 2.21e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062721.t1 | AT3G50760 | 68.539 | 356 | 87 | 6 | 13 | 365 | 5 | 338 | 1.02e-178 | 499 |
| MS.gene062721.t1 | AT1G19300 | 75.758 | 330 | 77 | 2 | 40 | 367 | 23 | 351 | 1.04e-174 | 490 |
| MS.gene062721.t1 | AT4G02130 | 60.759 | 316 | 110 | 3 | 46 | 360 | 41 | 343 | 7.72e-145 | 414 |
| MS.gene062721.t1 | AT4G02130 | 60.759 | 316 | 110 | 3 | 46 | 360 | 41 | 343 | 7.72e-145 | 414 |
| MS.gene062721.t1 | AT4G02130 | 60.759 | 316 | 110 | 3 | 46 | 360 | 41 | 343 | 7.72e-145 | 414 |
| MS.gene062721.t1 | AT3G62660 | 67.138 | 283 | 89 | 2 | 76 | 358 | 77 | 355 | 5.10e-142 | 407 |
| MS.gene062721.t1 | AT1G02720 | 56.213 | 338 | 136 | 3 | 24 | 360 | 32 | 358 | 3.45e-139 | 400 |
| MS.gene062721.t1 | AT1G02720 | 56.213 | 338 | 136 | 3 | 24 | 360 | 32 | 358 | 3.45e-139 | 400 |
| MS.gene062721.t1 | AT1G70090 | 52.575 | 369 | 160 | 5 | 1 | 360 | 1 | 363 | 3.48e-138 | 399 |
| MS.gene062721.t1 | AT1G70090 | 52.575 | 369 | 160 | 5 | 1 | 360 | 1 | 363 | 3.48e-138 | 399 |
| MS.gene062721.t1 | AT3G06260 | 57.729 | 317 | 115 | 3 | 46 | 361 | 46 | 344 | 5.10e-137 | 394 |
| MS.gene062721.t1 | AT1G13250 | 59.877 | 324 | 119 | 4 | 46 | 367 | 31 | 345 | 1.00e-136 | 393 |
| MS.gene062721.t1 | AT1G24170 | 57.994 | 319 | 128 | 3 | 46 | 360 | 50 | 366 | 7.23e-136 | 393 |
| MS.gene062721.t1 | AT3G28340 | 57.595 | 316 | 124 | 4 | 48 | 361 | 44 | 351 | 1.37e-134 | 389 |
| MS.gene062721.t1 | AT1G18580 | 32.258 | 186 | 117 | 5 | 165 | 349 | 342 | 519 | 7.00e-21 | 94.4 |
| MS.gene062721.t1 | AT5G47780 | 31.667 | 180 | 110 | 5 | 165 | 341 | 420 | 589 | 1.10e-19 | 90.9 |
| MS.gene062721.t1 | AT5G54690 | 30.151 | 199 | 122 | 8 | 165 | 356 | 331 | 519 | 8.90e-19 | 88.2 |
| MS.gene062721.t1 | AT3G61130 | 30.198 | 202 | 125 | 7 | 165 | 363 | 477 | 665 | 1.11e-17 | 85.1 |
| MS.gene062721.t1 | AT3G25140 | 29.000 | 200 | 123 | 5 | 165 | 358 | 363 | 549 | 8.32e-17 | 82.0 |
| MS.gene062721.t1 | AT4G38270 | 29.016 | 193 | 130 | 4 | 165 | 357 | 480 | 665 | 1.08e-16 | 82.0 |
| MS.gene062721.t1 | AT2G30575 | 26.894 | 264 | 172 | 11 | 95 | 345 | 332 | 587 | 1.15e-16 | 82.0 |
| MS.gene062721.t1 | AT4G38270 | 29.016 | 193 | 130 | 4 | 165 | 357 | 484 | 669 | 1.15e-16 | 82.0 |
| MS.gene062721.t1 | AT3G01040 | 28.283 | 198 | 127 | 7 | 165 | 356 | 296 | 484 | 1.37e-16 | 81.3 |
| MS.gene062721.t1 | AT3G58790 | 30.000 | 200 | 122 | 8 | 165 | 356 | 204 | 393 | 1.61e-16 | 80.9 |
| MS.gene062721.t1 | AT3G01040 | 27.778 | 198 | 128 | 7 | 165 | 356 | 329 | 517 | 1.79e-16 | 81.3 |
| MS.gene062721.t1 | AT3G01040 | 27.778 | 198 | 128 | 7 | 165 | 356 | 329 | 517 | 1.79e-16 | 81.3 |
| MS.gene062721.t1 | AT3G58790 | 30.000 | 200 | 122 | 8 | 165 | 356 | 336 | 525 | 1.90e-16 | 81.3 |
| MS.gene062721.t1 | AT1G06780 | 26.848 | 257 | 169 | 8 | 95 | 339 | 311 | 560 | 5.36e-16 | 79.7 |
| MS.gene062721.t1 | AT1G06780 | 26.848 | 257 | 169 | 8 | 95 | 339 | 324 | 573 | 6.02e-16 | 79.7 |
| MS.gene062721.t1 | AT5G15470 | 26.768 | 198 | 130 | 7 | 165 | 356 | 329 | 517 | 6.60e-15 | 76.3 |
| MS.gene062721.t1 | AT2G46480 | 24.042 | 287 | 181 | 9 | 78 | 363 | 295 | 545 | 3.57e-14 | 74.3 |
| MS.gene062721.t1 | AT2G46480 | 24.042 | 287 | 181 | 9 | 78 | 363 | 282 | 532 | 3.84e-14 | 73.9 |
| MS.gene062721.t1 | AT2G20810 | 32.663 | 199 | 123 | 7 | 165 | 363 | 342 | 529 | 5.79e-13 | 70.5 |
| MS.gene062721.t1 | AT3G02350 | 29.167 | 192 | 126 | 6 | 165 | 356 | 365 | 546 | 7.09e-12 | 67.0 |
Find 72 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTCCTTTGGATGCTCTT+TGG | 0.179612 | 1.4:+2597904 | MS.gene062721:CDS |
| TTGTCCTTTGGATGCTCTTT+GGG | 0.232558 | 1.4:+2597905 | MS.gene062721:CDS |
| TTCGATGATTCAATCGTTTC+GGG | 0.244627 | 1.4:+2597297 | MS.gene062721:CDS |
| CAATTATGCAAGAAGCTATT+TGG | 0.253341 | 1.4:+2597362 | MS.gene062721:CDS |
| TTTACTTCACACCAACATTT+TGG | 0.256817 | 1.4:+2597535 | MS.gene062721:CDS |
| TCATGTTCGGTGTCTTCTTC+TGG | 0.259724 | 1.4:-2597057 | None:intergenic |
| AATCAAGAATCAAGAGAAAA+TGG | 0.308067 | 1.4:-2597951 | None:intergenic |
| TTACTTTAATACCGGGGTTA+TGG | 0.328231 | 1.4:+2597602 | MS.gene062721:CDS |
| TTTCGATGATTCAATCGTTT+CGG | 0.340870 | 1.4:+2597296 | MS.gene062721:CDS |
| TGCTAATAGACCTTGTCCTT+TGG | 0.372206 | 1.4:+2597893 | MS.gene062721:CDS |
| AAACCTTGTTACTTTAATAC+CGG | 0.397438 | 1.4:+2597594 | MS.gene062721:CDS |
| TCACTGATGGAGGCACAATT+TGG | 0.401749 | 1.4:-2597033 | None:intergenic |
| GTCTTCTTCTGGTTCACTGA+TGG | 0.403834 | 1.4:-2597046 | None:intergenic |
| TTGTTCCTGTGGATCATAGA+TGG | 0.412121 | 1.4:+2597757 | MS.gene062721:CDS |
| GTCCAGTGAGTTTATTGCAT+TGG | 0.440935 | 1.4:+2597838 | MS.gene062721:CDS |
| TGCAATAAACTCACTGGACC+TGG | 0.441630 | 1.4:-2597834 | None:intergenic |
| AATTGTAGACTTGGAATTTG+AGG | 0.447752 | 1.4:-2597275 | None:intergenic |
| AGGTAAACCATGGGTGAGAT+TGG | 0.454495 | 1.4:+2597869 | MS.gene062721:CDS |
| GCGAATGTTAAAGACAAAGA+TGG | 0.456493 | 1.4:-2597564 | None:intergenic |
| TTATTGCATTGGAGTGGAAA+AGG | 0.458081 | 1.4:+2597849 | MS.gene062721:CDS |
| TGTAAGAAAAGTTGTGTACT+TGG | 0.460356 | 1.4:+2597404 | MS.gene062721:CDS |
| TTTGGTGAGTTGTAGAATTG+AGG | 0.465286 | 1.4:-2597015 | None:intergenic |
| GACAGAGAGGATTGCAGCCA+TGG | 0.467068 | 1.4:-2597154 | None:intergenic |
| GGTGTCTGCAAAAGATCATA+AGG | 0.476961 | 1.4:-2597930 | None:intergenic |
| AGATGGAATCAACATGGTCT+TGG | 0.481062 | 1.4:+2597774 | MS.gene062721:CDS |
| TTGGTGAGTTGTAGAATTGA+GGG | 0.481706 | 1.4:-2597014 | None:intergenic |
| TGCAGGGGAAATTGTTCCTG+TGG | 0.488544 | 1.4:+2597746 | MS.gene062721:CDS |
| TTCTTCTGGTTCACTGATGG+AGG | 0.490980 | 1.4:-2597043 | None:intergenic |
| AATCATCGAAATTGTAGACT+TGG | 0.491592 | 1.4:-2597284 | None:intergenic |
| TAGACTTGGAATTTGAGGTA+AGG | 0.496272 | 1.4:-2597270 | None:intergenic |
| AACCTTGTTACTTTAATACC+GGG | 0.498666 | 1.4:+2597595 | MS.gene062721:CDS |
| CTTTGTCGAGATCTTCATCC+AGG | 0.499442 | 1.4:+2597816 | MS.gene062721:CDS |
| AGACTTGGAATTTGAGGTAA+GGG | 0.499769 | 1.4:-2597269 | None:intergenic |
| AACATATATCCGAGGTTCCA+TGG | 0.527756 | 1.4:+2597137 | MS.gene062721:CDS |
| AACAAAGATTGAGGAATGGA+TGG | 0.528450 | 1.4:+2597662 | MS.gene062721:CDS |
| CGATATCATCAACTAAGATA+AGG | 0.533837 | 1.4:-2597434 | None:intergenic |
| CGAATGTTAAAGACAAAGAT+GGG | 0.534888 | 1.4:-2597563 | None:intergenic |
| TGTTAAAGACAAAGATGGGT+TGG | 0.537673 | 1.4:-2597559 | None:intergenic |
| CTCCAATGCAATAAACTCAC+TGG | 0.539210 | 1.4:-2597840 | None:intergenic |
| ATGAAGAAGTGAAGTGTTTG+AGG | 0.542144 | 1.4:-2597226 | None:intergenic |
| AGGATGAGAATCTATGAACT+TGG | 0.551100 | 1.4:+2597696 | MS.gene062721:CDS |
| TTTGTGGACATGATGAGTGT+TGG | 0.558842 | 1.4:-2597179 | None:intergenic |
| GTGAGTTTATTGCATTGGAG+TGG | 0.561039 | 1.4:+2597843 | MS.gene062721:CDS |
| ATCAAGTGCTGATCGAATTG+AGG | 0.561859 | 1.4:-2597331 | None:intergenic |
| GTGGACATGATGAGTGTTGG+AGG | 0.566977 | 1.4:-2597176 | None:intergenic |
| AATGGATGGAATTACAAAAG+AGG | 0.570341 | 1.4:+2597676 | MS.gene062721:CDS |
| TGATTCCATCTATGATCCAC+AGG | 0.576078 | 1.4:-2597762 | None:intergenic |
| TGGAATCAACATGGTCTTGG+TGG | 0.582134 | 1.4:+2597777 | MS.gene062721:CDS |
| TTAGCATCCAATCTCACCCA+TGG | 0.582810 | 1.4:-2597876 | None:intergenic |
| TGGTGAGTTGTAGAATTGAG+GGG | 0.584816 | 1.4:-2597013 | None:intergenic |
| TAGCTTCTTGCATAATTGAG+TGG | 0.588805 | 1.4:-2597357 | None:intergenic |
| ATATGTGTCAGTGTCATGTT+CGG | 0.593341 | 1.4:-2597070 | None:intergenic |
| TGATTACACAACAAAGATTG+AGG | 0.596745 | 1.4:+2597653 | MS.gene062721:CDS |
| CAAAGAGCATCCAAAGGACA+AGG | 0.605477 | 1.4:-2597903 | None:intergenic |
| GGATTGCAGCCATGGAACCT+CGG | 0.623683 | 1.4:-2597146 | None:intergenic |
| TAGAGATTGAAGACACAAGA+GGG | 0.627737 | 1.4:-2596920 | None:intergenic |
| ACCCCGGTATTAAAGTAACA+AGG | 0.631984 | 1.4:-2597597 | None:intergenic |
| AAATTTGCATTGCAATACTC+CGG | 0.633009 | 1.4:-2597507 | None:intergenic |
| ATGAGTGTTGGAGGACAGAG+AGG | 0.637026 | 1.4:-2597167 | None:intergenic |
| GGAGTGGAAAAGGTAAACCA+TGG | 0.642822 | 1.4:+2597859 | MS.gene062721:CDS |
| CTCTGAGGAAGCAGTCCATG+TGG | 0.643941 | 1.4:+2597098 | MS.gene062721:CDS |
| TAGATCAATTACCATAACCC+CGG | 0.646191 | 1.4:-2597613 | None:intergenic |
| GATGGGTTGGACCAAAATGT+TGG | 0.647131 | 1.4:-2597546 | None:intergenic |
| ACACAACAAAGATTGAGGAA+TGG | 0.651197 | 1.4:+2597658 | MS.gene062721:CDS |
| TGTCTAATGTCATTGCCACA+TGG | 0.655175 | 1.4:-2597113 | None:intergenic |
| ATAGAGATTGAAGACACAAG+AGG | 0.656250 | 1.4:-2596921 | None:intergenic |
| GAGTGGAAAAGGTAAACCAT+GGG | 0.662161 | 1.4:+2597860 | MS.gene062721:CDS |
| ACCTTGTTACTTTAATACCG+GGG | 0.664037 | 1.4:+2597596 | MS.gene062721:CDS |
| GGTGCCCAAAGAGCATCCAA+AGG | 0.694592 | 1.4:-2597909 | None:intergenic |
| GATCATAGATGGAATCAACA+TGG | 0.708687 | 1.4:+2597768 | MS.gene062721:CDS |
| TTAGACACAACATATATCCG+AGG | 0.716181 | 1.4:+2597129 | MS.gene062721:CDS |
| TGACACATATATCTGCTCTG+AGG | 0.739745 | 1.4:+2597083 | MS.gene062721:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATAAGAGTTTTGGTTT+TGG | - | chr1.4:2596886-2596905 | None:intergenic | 20.0% |
| !!! | AATTGTTTTTCTTGTTTTTG+AGG | - | chr1.4:2596971-2596990 | None:intergenic | 20.0% |
| !!! | AGAAAGAAAAATAAGAGTTT+TGG | - | chr1.4:2596892-2596911 | None:intergenic | 20.0% |
| ! | TGGTAATTGATCTAGAAAAA+TGG | + | chr1.4:2597622-2597641 | MS.gene062721:CDS | 25.0% |
| !! | ACAACTTTTCTTACACATAA+TGG | - | chr1.4:2597399-2597418 | None:intergenic | 25.0% |
| !!! | AAACCTTGTTACTTTAATAC+CGG | + | chr1.4:2597594-2597613 | MS.gene062721:CDS | 25.0% |
| !!! | AGGGAATGATTTTAAGATTA+TGG | - | chr1.4:2597253-2597272 | None:intergenic | 25.0% |
| !!! | TGTTTTTGAGGCATTTTTTT+TGG | - | chr1.4:2596959-2596978 | None:intergenic | 25.0% |
| AAATTTGCATTGCAATACTC+CGG | - | chr1.4:2597510-2597529 | None:intergenic | 30.0% | |
| AATCATCGAAATTGTAGACT+TGG | - | chr1.4:2597287-2597306 | None:intergenic | 30.0% | |
| AATGGATGGAATTACAAAAG+AGG | + | chr1.4:2597676-2597695 | MS.gene062721:CDS | 30.0% | |
| AATTGTAGACTTGGAATTTG+AGG | - | chr1.4:2597278-2597297 | None:intergenic | 30.0% | |
| CAATTATGCAAGAAGCTATT+TGG | + | chr1.4:2597362-2597381 | MS.gene062721:CDS | 30.0% | |
| CGAATGTTAAAGACAAAGAT+GGG | - | chr1.4:2597566-2597585 | None:intergenic | 30.0% | |
| CGATATCATCAACTAAGATA+AGG | - | chr1.4:2597437-2597456 | None:intergenic | 30.0% | |
| TGATTACACAACAAAGATTG+AGG | + | chr1.4:2597653-2597672 | MS.gene062721:CDS | 30.0% | |
| TGTAAGAAAAGTTGTGTACT+TGG | + | chr1.4:2597404-2597423 | MS.gene062721:CDS | 30.0% | |
| TTTCGATGATTCAATCGTTT+CGG | + | chr1.4:2597296-2597315 | MS.gene062721:CDS | 30.0% | |
| ! | AAGTGAAAGATGATGTTTTG+TGG | - | chr1.4:2597198-2597217 | None:intergenic | 30.0% |
| ! | TTTACTTCACACCAACATTT+TGG | + | chr1.4:2597535-2597554 | MS.gene062721:CDS | 30.0% |
| !! | AACCTTGTTACTTTAATACC+GGG | + | chr1.4:2597595-2597614 | MS.gene062721:CDS | 30.0% |
| !!! | CTTTTTTGCTTGTTTTTGCA+GGG | + | chr1.4:2597730-2597749 | MS.gene062721:CDS | 30.0% |
| !!! | TGCCAAAACTGCATTTTTTT+CGG | - | chr1.4:2597484-2597503 | None:intergenic | 30.0% |
| !!! | TTTTTTGCTTGTTTTTGCAG+GGG | + | chr1.4:2597731-2597750 | MS.gene062721:CDS | 30.0% |
| AACAAAGATTGAGGAATGGA+TGG | + | chr1.4:2597662-2597681 | MS.gene062721:CDS | 35.0% | |
| ACACAACAAAGATTGAGGAA+TGG | + | chr1.4:2597658-2597677 | MS.gene062721:CDS | 35.0% | |
| AGGATGAGAATCTATGAACT+TGG | + | chr1.4:2597696-2597715 | MS.gene062721:CDS | 35.0% | |
| ATAGAGATTGAAGACACAAG+AGG | - | chr1.4:2596924-2596943 | None:intergenic | 35.0% | |
| ATATGTGTCAGTGTCATGTT+CGG | - | chr1.4:2597073-2597092 | None:intergenic | 35.0% | |
| CCTGCAAAAACAAGCAAAAA+AGG | - | chr1.4:2597732-2597751 | None:intergenic | 35.0% | |
| GATCATAGATGGAATCAACA+TGG | + | chr1.4:2597768-2597787 | MS.gene062721:CDS | 35.0% | |
| GCAAAAACAAGCAAAAAAGG+TGG | - | chr1.4:2597729-2597748 | None:intergenic | 35.0% | |
| GCGAATGTTAAAGACAAAGA+TGG | - | chr1.4:2597567-2597586 | None:intergenic | 35.0% | |
| TAGAGATTGAAGACACAAGA+GGG | - | chr1.4:2596923-2596942 | None:intergenic | 35.0% | |
| TAGATCAATTACCATAACCC+CGG | - | chr1.4:2597616-2597635 | None:intergenic | 35.0% | |
| TAGCTTCTTGCATAATTGAG+TGG | - | chr1.4:2597360-2597379 | None:intergenic | 35.0% | |
| TGTTAAAGACAAAGATGGGT+TGG | - | chr1.4:2597562-2597581 | None:intergenic | 35.0% | |
| TTACTTTAATACCGGGGTTA+TGG | + | chr1.4:2597602-2597621 | MS.gene062721:CDS | 35.0% | |
| TTAGACACAACATATATCCG+AGG | + | chr1.4:2597129-2597148 | MS.gene062721:CDS | 35.0% | |
| TTATTGCATTGGAGTGGAAA+AGG | + | chr1.4:2597849-2597868 | MS.gene062721:CDS | 35.0% | |
| TTCGATGATTCAATCGTTTC+GGG | + | chr1.4:2597297-2597316 | MS.gene062721:CDS | 35.0% | |
| TTGGTGAGTTGTAGAATTGA+GGG | - | chr1.4:2597017-2597036 | None:intergenic | 35.0% | |
| TTTGGTGAGTTGTAGAATTG+AGG | - | chr1.4:2597018-2597037 | None:intergenic | 35.0% | |
| ! | AGACTTGGAATTTGAGGTAA+GGG | - | chr1.4:2597272-2597291 | None:intergenic | 35.0% |
| ! | AGCCGAAAAAAATGCAGTTT+TGG | + | chr1.4:2597479-2597498 | MS.gene062721:CDS | 35.0% |
| ! | ATGAAGAAGTGAAGTGTTTG+AGG | - | chr1.4:2597229-2597248 | None:intergenic | 35.0% |
| ! | TAGACTTGGAATTTGAGGTA+AGG | - | chr1.4:2597273-2597292 | None:intergenic | 35.0% |
| !! | ACCTTGTTACTTTAATACCG+GGG | + | chr1.4:2597596-2597615 | MS.gene062721:CDS | 35.0% |
| !!! | ACTGCATTTTTTTCGGCTAA+TGG | - | chr1.4:2597477-2597496 | None:intergenic | 35.0% |
| !!! | CCTTTTTTGCTTGTTTTTGC+AGG | + | chr1.4:2597729-2597748 | MS.gene062721:CDS | 35.0% |
| !!! | TGAGGCATTTTTTTTGGTGT+TGG | - | chr1.4:2596953-2596972 | None:intergenic | 35.0% |
| AACATATATCCGAGGTTCCA+TGG | + | chr1.4:2597137-2597156 | MS.gene062721:CDS | 40.0% | |
| ACCCCGGTATTAAAGTAACA+AGG | - | chr1.4:2597600-2597619 | None:intergenic | 40.0% | |
| AGATGGAATCAACATGGTCT+TGG | + | chr1.4:2597774-2597793 | MS.gene062721:CDS | 40.0% | |
| CTCCAATGCAATAAACTCAC+TGG | - | chr1.4:2597843-2597862 | None:intergenic | 40.0% | |
| GAGTGGAAAAGGTAAACCAT+GGG | + | chr1.4:2597860-2597879 | MS.gene062721:CDS | 40.0% | |
| GGTGTCTGCAAAAGATCATA+AGG | - | chr1.4:2597933-2597952 | None:intergenic | 40.0% | |
| GTCCAGTGAGTTTATTGCAT+TGG | + | chr1.4:2597838-2597857 | MS.gene062721:CDS | 40.0% | |
| GTGAGTTTATTGCATTGGAG+TGG | + | chr1.4:2597843-2597862 | MS.gene062721:CDS | 40.0% | |
| TGACACATATATCTGCTCTG+AGG | + | chr1.4:2597083-2597102 | MS.gene062721:CDS | 40.0% | |
| TGATTCCATCTATGATCCAC+AGG | - | chr1.4:2597765-2597784 | None:intergenic | 40.0% | |
| TGCTAATAGACCTTGTCCTT+TGG | + | chr1.4:2597893-2597912 | MS.gene062721:CDS | 40.0% | |
| TGGTGAGTTGTAGAATTGAG+GGG | - | chr1.4:2597016-2597035 | None:intergenic | 40.0% | |
| TGTCTAATGTCATTGCCACA+TGG | - | chr1.4:2597116-2597135 | None:intergenic | 40.0% | |
| TTGTCCTTTGGATGCTCTTT+GGG | + | chr1.4:2597905-2597924 | MS.gene062721:CDS | 40.0% | |
| TTGTTCCTGTGGATCATAGA+TGG | + | chr1.4:2597757-2597776 | MS.gene062721:CDS | 40.0% | |
| TTTGTGGACATGATGAGTGT+TGG | - | chr1.4:2597182-2597201 | None:intergenic | 40.0% | |
| !! | ATCAAGTGCTGATCGAATTG+AGG | - | chr1.4:2597334-2597353 | None:intergenic | 40.0% |
| !!! | CTTGGTGGTGATAATTTTCG+AGG | + | chr1.4:2597792-2597811 | MS.gene062721:CDS | 40.0% |
| !!! | GGCATTTTTTTTGGTGTTGG+AGG | - | chr1.4:2596950-2596969 | None:intergenic | 40.0% |
| AGGTAAACCATGGGTGAGAT+TGG | + | chr1.4:2597869-2597888 | MS.gene062721:CDS | 45.0% | |
| CTTGTCCTTTGGATGCTCTT+TGG | + | chr1.4:2597904-2597923 | MS.gene062721:CDS | 45.0% | |
| CTTTGTCGAGATCTTCATCC+AGG | + | chr1.4:2597816-2597835 | MS.gene062721:CDS | 45.0% | |
| GATCTAGAAAAATGGCGCGA+CGG | + | chr1.4:2597630-2597649 | MS.gene062721:CDS | 45.0% | |
| GGAGTGGAAAAGGTAAACCA+TGG | + | chr1.4:2597859-2597878 | MS.gene062721:CDS | 45.0% | |
| TGCAATAAACTCACTGGACC+TGG | - | chr1.4:2597837-2597856 | None:intergenic | 45.0% | |
| TTAGCATCCAATCTCACCCA+TGG | - | chr1.4:2597879-2597898 | None:intergenic | 45.0% | |
| ! | TCACTGATGGAGGCACAATT+TGG | - | chr1.4:2597036-2597055 | None:intergenic | 45.0% |
| ! | TGGAATCAACATGGTCTTGG+TGG | + | chr1.4:2597777-2597796 | MS.gene062721:CDS | 45.0% |
| !! | AAATGCAGTTTTGGCAGCAC+CGG | + | chr1.4:2597488-2597507 | MS.gene062721:CDS | 45.0% |
| !! | CAAAGAGCATCCAAAGGACA+AGG | - | chr1.4:2597906-2597925 | None:intergenic | 45.0% |
| !! | GATGGGTTGGACCAAAATGT+TGG | - | chr1.4:2597549-2597568 | None:intergenic | 45.0% |
| !! | GTCTTCTTCTGGTTCACTGA+TGG | - | chr1.4:2597049-2597068 | None:intergenic | 45.0% |
| !! | TCATGTTCGGTGTCTTCTTC+TGG | - | chr1.4:2597060-2597079 | None:intergenic | 45.0% |
| !! | TTCTTCTGGTTCACTGATGG+AGG | - | chr1.4:2597046-2597065 | None:intergenic | 45.0% |
| TGCAGGGGAAATTGTTCCTG+TGG | + | chr1.4:2597746-2597765 | MS.gene062721:CDS | 50.0% | |
| !! | ATGAGTGTTGGAGGACAGAG+AGG | - | chr1.4:2597170-2597189 | None:intergenic | 50.0% |
| !! | GTGGACATGATGAGTGTTGG+AGG | - | chr1.4:2597179-2597198 | None:intergenic | 50.0% |
| GACAGAGAGGATTGCAGCCA+TGG | - | chr1.4:2597157-2597176 | None:intergenic | 55.0% | |
| GGATTGCAGCCATGGAACCT+CGG | - | chr1.4:2597149-2597168 | None:intergenic | 55.0% | |
| ! | CTCTGAGGAAGCAGTCCATG+TGG | + | chr1.4:2597098-2597117 | MS.gene062721:CDS | 55.0% |
| !! | GGTGCCCAAAGAGCATCCAA+AGG | - | chr1.4:2597912-2597931 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 2596868 | 2597971 | 2596868 | ID=MS.gene062721 |
| chr1.4 | mRNA | 2596868 | 2597971 | 2596868 | ID=MS.gene062721.t1;Parent=MS.gene062721 |
| chr1.4 | exon | 2596868 | 2597971 | 2596868 | ID=MS.gene062721.t1.exon1;Parent=MS.gene062721.t1 |
| chr1.4 | CDS | 2596868 | 2597971 | 2596868 | ID=cds.MS.gene062721.t1;Parent=MS.gene062721.t1 |
| Gene Sequence |
| Protein sequence |
