AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063116


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063116.t1 MTR_3g117580 96.681 693 21 1 1 693 1 691 0.0 1385
MS.gene063116.t1 MTR_8g067420 28.000 250 157 7 336 569 1 243 7.05e-21 94.4
MS.gene063116.t1 MTR_8g067420 27.193 228 144 6 336 547 1 222 6.53e-18 84.3
MS.gene063116.t1 MTR_8g067420 27.193 228 144 6 336 547 1 222 1.10e-17 84.0
MS.gene063116.t1 MTR_4g094905 28.502 207 126 8 339 536 39 232 7.59e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063116.t1 AT4G38890 62.700 689 218 11 15 693 32 691 0.0 865
MS.gene063116.t1 AT3G49640 28.846 312 180 12 336 627 1 290 1.28e-26 111
MS.gene063116.t1 AT3G49640 28.846 312 180 12 336 627 1 290 4.09e-26 110
MS.gene063116.t1 AT3G49640 31.034 232 130 7 336 547 1 222 2.50e-21 94.4
MS.gene063116.t1 AT3G49640 30.045 223 129 9 411 627 50 251 4.71e-20 90.9
MS.gene063116.t1 AT3G49640 30.045 223 129 9 411 627 50 251 1.50e-19 90.1
MS.gene063116.t1 AT5G67220 27.885 208 142 4 339 544 87 288 1.67e-16 82.8

Find 163 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCACTACTTGCAAATTATT+AGG 0.146154 3.3:+95518005 None:intergenic
CATTCATCTGAAGATTTATT+TGG 0.158032 3.3:-95518625 MS.gene063116:CDS
AAAAGAAGCTTATTGATTTC+AGG 0.171029 3.3:-95519194 MS.gene063116:CDS
CCACTACTTGCAAATTATTA+GGG 0.199094 3.3:+95518006 None:intergenic
TCTGAAGGGGCTTGCCCTTA+TGG 0.207997 3.3:-95520415 MS.gene063116:CDS
TTTGAGTTTGGCATCAGTTT+TGG 0.209531 3.3:+95520258 None:intergenic
GTACATACCTGTTGGTCTTT+TGG 0.213055 3.3:-95517120 MS.gene063116:CDS
CGGAGAGTTTGCAAAGTATT+AGG 0.224724 3.3:-95519123 MS.gene063116:CDS
TTCAAGCTTAGATCAGTTTC+TGG 0.235550 3.3:+95519231 None:intergenic
TATTGACATTGTTGTGAATA+AGG 0.254656 3.3:-95518500 MS.gene063116:CDS
GAAAATACCTTTATAGTTAC+TGG 0.254912 3.3:+95518400 None:intergenic
GGCAATGTGCACAAATCTTT+TGG 0.260235 3.3:-95519076 MS.gene063116:CDS
GAGGGTGGCGAGGATGATTC+TGG 0.262956 3.3:-95520959 MS.gene063116:CDS
AAGGAAAGGTGTGAAGTTAA+TGG 0.263218 3.3:-95520331 MS.gene063116:CDS
ATCAAGCATGTGGCAAGTTC+AGG 0.280736 3.3:+95517930 None:intergenic
CTGTTGGAAATCTCCCTTTC+CGG 0.300157 3.3:-95519143 MS.gene063116:CDS
TTCAATCCGTTAGAAGATAA+AGG 0.302002 3.3:+95520352 None:intergenic
ACAGCTCGCCCTACAGTATC+TGG 0.309018 3.3:+95518580 None:intergenic
AGTGCAGAAATTGGCTGATT+TGG 0.309679 3.3:-95520461 MS.gene063116:intron
CAAATTATTAGGGGCTTTCC+TGG 0.310598 3.3:+95518016 None:intergenic
TCACCTGACTTGGCAATGTT+TGG 0.321046 3.3:+95520629 None:intergenic
TGCAGCTTCCGTCCACAATT+TGG 0.322863 3.3:+95519292 None:intergenic
TGGCGTCCACCATCTTACTA+TGG 0.337133 3.3:-95517074 MS.gene063116:CDS
TAAGCATTTGATTTATGCTT+TGG 0.341936 3.3:+95516488 None:intergenic
CTGAAGGGGCTTGCCCTTAT+GGG 0.347394 3.3:-95520414 MS.gene063116:CDS
TTCTTCTCCTTGGCGAGAAC+GGG 0.350694 3.3:+95520797 None:intergenic
CCTCCGACTCTGCAGCTGAC+TGG 0.356032 3.3:-95517025 MS.gene063116:CDS
CTGGATATTTACAGAGATAA+AGG 0.364629 3.3:-95517729 MS.gene063116:CDS
TTATTCACAACAATGTCAAT+AGG 0.366558 3.3:+95518502 None:intergenic
ACTCAAACGTGAACGTCTTC+AGG 0.379434 3.3:-95520762 MS.gene063116:intron
TGAAATAACATGCGGTGAAA+TGG 0.380122 3.3:-95519097 MS.gene063116:CDS
GCTTACGATAGAGCTGAAAA+TGG 0.381878 3.3:-95516470 MS.gene063116:CDS
TGATAGCAAACTTTAGCTCT+TGG 0.383995 3.3:-95518124 MS.gene063116:CDS
TGGTTCCACAACGAATAAAT+TGG 0.387831 3.3:-95517094 MS.gene063116:CDS
CGAATGAAGTCCTTCTTAAC+AGG 0.389902 3.3:+95520875 None:intergenic
CTTTATCTCTGTAAATATCC+AGG 0.392779 3.3:+95517730 None:intergenic
ACTCAAAACTCTTGGTCTCT+TGG 0.396620 3.3:-95520242 MS.gene063116:intron
CGACATTGGGACATCAGTTC+TGG 0.407542 3.3:-95517701 MS.gene063116:CDS
CGATATTCCAGTAACTATAA+AGG 0.408639 3.3:-95518407 MS.gene063116:intron
AATGGCTTAGCTACACTTGT+AGG 0.413091 3.3:-95517142 MS.gene063116:CDS
AAAGAAGCTTATTGATTTCA+GGG 0.413252 3.3:-95519193 MS.gene063116:CDS
CTCCGACTCTGCAGCTGACT+GGG 0.414717 3.3:-95517024 MS.gene063116:intron
CGATTATCAGAGATGTTACT+TGG 0.415656 3.3:-95516539 MS.gene063116:CDS
CTGATGATGACGGCTCTTGT+GGG 0.420813 3.3:-95519600 MS.gene063116:CDS
GACTACCAGGCGGTTCTTGT+TGG 0.425033 3.3:-95517165 MS.gene063116:CDS
CCTTGAATGCTTGAATATCA+TGG 0.425429 3.3:+95520567 None:intergenic
TTTATCTTCTAACGGATTGA+AGG 0.427366 3.3:-95520350 MS.gene063116:CDS
TCAAGCTTAGATCAGTTTCT+GGG 0.431326 3.3:+95519232 None:intergenic
GCCCCTTCAGATTTCAGAAA+AGG 0.433089 3.3:+95520427 None:intergenic
ATTATTCAGAATAAGTCAAA+AGG 0.433111 3.3:-95519739 MS.gene063116:intron
TATTCACAACAATGTCAATA+GGG 0.433555 3.3:+95518503 None:intergenic
GCGTTTAGATTTCTTCTCCT+TGG 0.436186 3.3:+95520787 None:intergenic
TGTCCAAACATTGCCAAGTC+AGG 0.437155 3.3:-95520632 MS.gene063116:CDS
GATAGCAAACTTTAGCTCTT+GGG 0.437315 3.3:-95518123 MS.gene063116:CDS
ATTGACATTGTTGTGAATAA+GGG 0.443562 3.3:-95518499 MS.gene063116:CDS
TCTGATGATGACGGCTCTTG+TGG 0.451639 3.3:-95519601 MS.gene063116:CDS
AATCTACAGGATAACCCATA+AGG 0.452239 3.3:+95520400 None:intergenic
AGAACGGGAGGTTTGTCGTT+AGG 0.455603 3.3:+95520812 None:intergenic
CTATAGCAAGCCTGCTGACT+GGG 0.455984 3.3:-95518057 MS.gene063116:CDS
CTTGCACCCTTGACCACTGT+TGG 0.457396 3.3:-95519159 MS.gene063116:CDS
CCATGATATTCAAGCATTCA+AGG 0.465143 3.3:-95520567 MS.gene063116:CDS
TATTCAAGCATTCAAGGAAC+AGG 0.470870 3.3:-95520561 MS.gene063116:intron
ACCACATCCAAAAGACCAAC+AGG 0.471371 3.3:+95517113 None:intergenic
AGTAGTAGAAGTAGTTCGAT+CGG 0.471860 3.3:+95520844 None:intergenic
CAAATAAATCTTCAGATGAA+TGG 0.475342 3.3:+95518626 None:intergenic
CCTAATAATTTGCAAGTAGT+GGG 0.481679 3.3:-95518005 MS.gene063116:CDS
GCTATAGCAAGCCTGCTGAC+TGG 0.484632 3.3:-95518058 MS.gene063116:CDS
CCAGGCGGTTCTTGTTGGAA+TGG 0.486124 3.3:-95517160 MS.gene063116:CDS
AGATAAAGGAACAGCGACAT+TGG 0.487762 3.3:-95517715 MS.gene063116:CDS
ATCTACAGGATAACCCATAA+GGG 0.490649 3.3:+95520401 None:intergenic
AGCTGTTGAACTAATAGAAA+AGG 0.491306 3.3:-95518563 MS.gene063116:CDS
GGTGCAAAAGTAAAGCCATC+TGG 0.492838 3.3:+95516509 None:intergenic
CTAATACTTTGCAAACTCTC+CGG 0.503430 3.3:+95519124 None:intergenic
CCCTAATAATTTGCAAGTAG+TGG 0.503908 3.3:-95518006 MS.gene063116:CDS
GAGATTTCCAACAGTGGTCA+AGG 0.504165 3.3:+95519152 None:intergenic
TTTCTTCTCCTTGGCGAGAA+CGG 0.504371 3.3:+95520796 None:intergenic
AGTGTTGTAGAAGTAGCTTC+AGG 0.504684 3.3:-95518436 MS.gene063116:CDS
GATAAAGGAACAGCGACATT+GGG 0.506305 3.3:-95517714 MS.gene063116:CDS
CTTCTAACGGATTGAAGGAA+AGG 0.507476 3.3:-95520345 MS.gene063116:CDS
GAAGTAGTTCGATCGGGAGG+AGG 0.507762 3.3:+95520851 None:intergenic
ATGCATAGCTCCTGTTAAGA+AGG 0.509595 3.3:-95520885 MS.gene063116:CDS
CTTTGCAAACTCTCCGGAAA+GGG 0.509906 3.3:+95519130 None:intergenic
TATTTGGTGTACAAATCTGT+GGG 0.518175 3.3:-95518609 MS.gene063116:CDS
AGGGTGGCGAGGATGATTCT+GGG 0.519642 3.3:-95520958 MS.gene063116:CDS
GGTAAGCCTTTATCTTCTAA+CGG 0.521576 3.3:-95520358 MS.gene063116:CDS
AATAGGGTCAAGCTTCAGAA+TGG 0.525188 3.3:-95518663 MS.gene063116:intron
GATGCCAAACTCAAAACTCT+TGG 0.527301 3.3:-95520250 MS.gene063116:CDS
GCAGAAATTGGCTGATTTGG+AGG 0.528457 3.3:-95520458 MS.gene063116:intron
GGACGCCAATTTATTCGTTG+TGG 0.530603 3.3:+95517089 None:intergenic
TCAAGCATGTGGCAAGTTCA+GGG 0.531108 3.3:+95517931 None:intergenic
AGGTTTGTCGTTAGGAGCAG+AGG 0.532676 3.3:+95520820 None:intergenic
GGAATTAACATCACCTGACT+TGG 0.533236 3.3:+95520619 None:intergenic
TCCACCATCTTACTATGGGC+GGG 0.533280 3.3:-95517069 MS.gene063116:CDS
TTCTCCTTGGCGAGAACGGG+AGG 0.534154 3.3:+95520800 None:intergenic
AACTTAGAATCTGAGTCAGC+AGG 0.536668 3.3:+95519574 None:intergenic
GTAGTAGAAGTAGTTCGATC+GGG 0.539289 3.3:+95520845 None:intergenic
TTTATCTCTGTAAATATCCA+GGG 0.542057 3.3:+95517731 None:intergenic
TCTTGCGATCAGTTGTTCGA+TGG 0.544926 3.3:+95520907 None:intergenic
AACTTTAATAAGTGCACCAC+GGG 0.546118 3.3:+95517905 None:intergenic
CGCAGAAAATTGTGAAGATG+AGG 0.547997 3.3:-95519461 MS.gene063116:CDS
CATTGGGGTTCAGATACAAA+AGG 0.548625 3.3:-95517632 MS.gene063116:intron
TTATTTGGTGTACAAATCTG+TGG 0.548788 3.3:-95518610 MS.gene063116:CDS
TACCCAGTCAGCTGCAGAGT+CGG 0.552423 3.3:+95517022 None:intergenic
ATAGCAAACTTTAGCTCTTG+GGG 0.552673 3.3:-95518122 MS.gene063116:CDS
ATTGTTGTGAATAAGGGTGC+TGG 0.557588 3.3:-95518493 MS.gene063116:CDS
ATAGGGTCAAGCTTCAGAAT+GGG 0.559018 3.3:-95518662 MS.gene063116:intron
AATTTGCAAGTAGTGGGGAA+TGG 0.559807 3.3:-95517999 MS.gene063116:CDS
CACTACTTGCAAATTATTAG+GGG 0.560194 3.3:+95518007 None:intergenic
GGCGTCCACCATCTTACTAT+GGG 0.561761 3.3:-95517073 MS.gene063116:CDS
TTGTGCGGTTACATCTGACT+TGG 0.563691 3.3:-95519656 MS.gene063116:CDS
AGCGAAAATGGAGGGTGGCG+AGG 0.566641 3.3:-95520969 None:intergenic
AGATTTCATTGATATAAACA+TGG 0.570150 3.3:-95518530 MS.gene063116:CDS
GCTAGTGCAGTGACAATACA+TGG 0.572548 3.3:-95518098 MS.gene063116:CDS
GTCCACCATCTTACTATGGG+CGG 0.574224 3.3:-95517070 MS.gene063116:CDS
GAAGACGTTCACGTTTGAGT+TGG 0.577856 3.3:+95520765 None:intergenic
ATTTAGAGAGCGAAAATGGA+GGG 0.578238 3.3:-95520977 None:intergenic
GATGAGGAGACGGAAAATGA+AGG 0.581481 3.3:-95519445 MS.gene063116:intron
TATACGTAATCCCAGTCAGC+AGG 0.583058 3.3:+95518047 None:intergenic
ATTACGTATATCAGTGTACC+AGG 0.583452 3.3:-95518034 MS.gene063116:CDS
TTATTCAGAATAAGTCAAAA+GGG 0.583832 3.3:-95519738 MS.gene063116:intron
ATAAGATCTGAATCAGAGGC+AGG 0.586531 3.3:-95519270 MS.gene063116:CDS
GGCGAGGATGATTCTGGGAA+GGG 0.586709 3.3:-95520953 MS.gene063116:CDS
ACTTGGCAATGTTTGGACAA+AGG 0.587871 3.3:+95520636 None:intergenic
GTGCAGTGACAATACATGGC+AGG 0.591689 3.3:-95518094 MS.gene063116:CDS
TCATCCCGCCCATAGTAAGA+TGG 0.591793 3.3:+95517065 None:intergenic
TTACTTGGCAAAGTTCCAGA+TGG 0.593149 3.3:-95516524 MS.gene063116:CDS
GGGCACATCCAGATACTGTA+GGG 0.597587 3.3:-95518588 MS.gene063116:CDS
AAATTGTGAAGATGAGGAGA+CGG 0.597649 3.3:-95519455 MS.gene063116:CDS
CCATTCCAACAAGAACCGCC+TGG 0.597793 3.3:+95517160 None:intergenic
CCAGTCAGCTGCAGAGTCGG+AGG 0.597833 3.3:+95517025 None:intergenic
GATTTCATTGATATAAACAT+GGG 0.598109 3.3:-95518529 MS.gene063116:CDS
CAGAAATTGGCTGATTTGGA+GGG 0.598151 3.3:-95520457 MS.gene063116:CDS
GCCACATGCTTGATTGCCCG+TGG 0.599335 3.3:-95517921 MS.gene063116:CDS
GGGGCACATCCAGATACTGT+AGG 0.600909 3.3:-95518589 MS.gene063116:CDS
TGGCGAGGATGATTCTGGGA+AGG 0.606139 3.3:-95520954 MS.gene063116:CDS
ACTTTGCAAACTCTCCGGAA+AGG 0.609314 3.3:+95519129 None:intergenic
CAAACCTCCCGTTCTCGCCA+AGG 0.612861 3.3:-95520804 MS.gene063116:CDS
CGCCATCAGTCTGATGATGA+CGG 0.614570 3.3:-95519610 MS.gene063116:CDS
CAAGCTTAGATCAGTTTCTG+GGG 0.615452 3.3:+95519233 None:intergenic
GATGTTATAAAAGATGATGA+TGG 0.618144 3.3:-95519538 MS.gene063116:CDS
CGGAGGCCATCAGTGTCTCA+AGG 0.618970 3.3:+95517042 None:intergenic
TGATGATGACGGCTCTTGTG+GGG 0.619036 3.3:-95519599 MS.gene063116:CDS
AGATTTCCAACAGTGGTCAA+GGG 0.619386 3.3:+95519153 None:intergenic
CTGCATAAGATCTGAATCAG+AGG 0.625016 3.3:-95519274 MS.gene063116:CDS
TGACAATACATGGCAGGTCA+CGG 0.625204 3.3:-95518088 MS.gene063116:CDS
TCCCGCCCATAGTAAGATGG+TGG 0.627157 3.3:+95517068 None:intergenic
AGCCGTCATCATCAGACTGA+TGG 0.627690 3.3:+95519608 None:intergenic
ACTTGTAGGTACATACCTGT+TGG 0.629119 3.3:-95517128 MS.gene063116:CDS
GGATGACCTTGAGACACTGA+TGG 0.629574 3.3:-95517048 MS.gene063116:CDS
GAGTGTTGATGACCAAATTG+TGG 0.636784 3.3:-95519304 MS.gene063116:CDS
GTAGAAGTAGTTCGATCGGG+AGG 0.637202 3.3:+95520848 None:intergenic
CTAATAATTTGCAAGTAGTG+GGG 0.639061 3.3:-95518004 MS.gene063116:CDS
ACCACGGGCAATCAAGCATG+TGG 0.640032 3.3:+95517920 None:intergenic
TGATGACAATGGTTCTTGTG+CGG 0.672149 3.3:-95519671 MS.gene063116:CDS
GACTTGGAAAACAAAGACGA+TGG 0.672348 3.3:-95519640 MS.gene063116:CDS
ATTTGGTGTACAAATCTGTG+GGG 0.684676 3.3:-95518608 MS.gene063116:CDS
TGTGTTTCGTCTGATGACAA+TGG 0.684701 3.3:-95519682 MS.gene063116:CDS
GTTGATGACCAAATTGTGGA+CGG 0.696468 3.3:-95519300 MS.gene063116:CDS
TAGAGAGCGAAAATGGAGGG+TGG 0.698133 3.3:-95520974 None:intergenic
GAAAGGGAGATTTCCAACAG+TGG 0.699664 3.3:+95519146 None:intergenic
TAACTTTAATAAGTGCACCA+CGG 0.702021 3.3:+95517904 None:intergenic
TTAGGAGCTGAAATAACATG+CGG 0.710264 3.3:-95519105 MS.gene063116:CDS
TAGGGGTGGAGACTACCAGG+CGG 0.796234 3.3:-95517175 MS.gene063116:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGTTTATTAATTTACAA+GGG - chr3.3:95516923-95516942 MS.gene063116:intron 10.0%
!!! TAAAATCTTAATTTTATACA+AGG + chr3.3:95520609-95520628 None:intergenic 10.0%
!! AATCTAATATTATAATATCC+TGG - chr3.3:95520826-95520845 MS.gene063116:CDS 15.0%
!! ATTGTTTATTAATTTACAAG+GGG - chr3.3:95516924-95516943 MS.gene063116:intron 15.0%
!! CAATTGTTTATTAATTTACA+AGG - chr3.3:95516922-95516941 MS.gene063116:intron 15.0%
!!! ATAATTTTGCTTTTGTAATA+GGG - chr3.3:95518749-95518768 MS.gene063116:intron 15.0%
!!! ATACAAAAGGTATATTTTAT+TGG - chr3.3:95519809-95519828 MS.gene063116:intron 15.0%
!!! GTGTGTTTTTAATTTTAATA+TGG - chr3.3:95517598-95517617 MS.gene063116:intron 15.0%
!! AAATATAATGAATAAGTGTC+AGG + chr3.3:95520576-95520595 None:intergenic 20.0%
!! AATTAAAACTGAGTTCTTAA+AGG + chr3.3:95517644-95517663 None:intergenic 20.0%
!! AATTTGAGCAATGATAATAA+AGG + chr3.3:95517565-95517584 None:intergenic 20.0%
!! AGATTTCATTGATATAAACA+TGG - chr3.3:95518898-95518917 MS.gene063116:intron 20.0%
!! AGCTATTTATATAGAAAAGA+AGG + chr3.3:95516699-95516718 None:intergenic 20.0%
!! ATGTGTATTTAAAAATCTAC+AGG + chr3.3:95517044-95517063 None:intergenic 20.0%
!! ATTATTCAGAATAAGTCAAA+AGG - chr3.3:95517689-95517708 MS.gene063116:CDS 20.0%
!! GATTTCATTGATATAAACAT+GGG - chr3.3:95518899-95518918 MS.gene063116:intron 20.0%
!! GCTATTTATATAGAAAAGAA+GGG + chr3.3:95516698-95516717 None:intergenic 20.0%
!! TTATTCAGAATAAGTCAAAA+GGG - chr3.3:95517690-95517709 MS.gene063116:CDS 20.0%
!! TTGTTTATTAATTTACAAGG+GGG - chr3.3:95516925-95516944 MS.gene063116:intron 20.0%
!! TTTCATAGCAATTATGAATT+CGG + chr3.3:95517268-95517287 None:intergenic 20.0%
!!! AATTATTGGTTCCTATATTA+AGG + chr3.3:95518573-95518592 None:intergenic 20.0%
!!! ACTTGATAAATTCATTTTAG+GGG + chr3.3:95518514-95518533 None:intergenic 20.0%
!!! AGAAAATAGTTTTGTTTAAC+AGG - chr3.3:95520729-95520748 MS.gene063116:intron 20.0%
!!! ATATTATATGCTGTGTTTTA+GGG - chr3.3:95520235-95520254 MS.gene063116:intron 20.0%
!!! ATTTTTAAATACACATCAAG+AGG - chr3.3:95517048-95517067 MS.gene063116:CDS 20.0%
!!! CACTTGATAAATTCATTTTA+GGG + chr3.3:95518515-95518534 None:intergenic 20.0%
!!! CATAATTTTGCTTTTGTAAT+AGG - chr3.3:95518748-95518767 MS.gene063116:intron 20.0%
!!! TATATTATATGCTGTGTTTT+AGG - chr3.3:95520234-95520253 MS.gene063116:intron 20.0%
!!! TATATTTTGATACCAATTTC+AGG - chr3.3:95518455-95518474 MS.gene063116:CDS 20.0%
!!! TCACTTGATAAATTCATTTT+AGG + chr3.3:95518516-95518535 None:intergenic 20.0%
!!! TTTTTAAATACACATCAAGA+GGG - chr3.3:95517049-95517068 MS.gene063116:CDS 20.0%
! AAAAGAATCGTTTAACAGTA+TGG + chr3.3:95520854-95520873 None:intergenic 25.0%
! AAACATTGATGAGTGTATAA+GGG - chr3.3:95520039-95520058 MS.gene063116:intron 25.0%
! AAAGAATCGTTTAACAGTAT+GGG + chr3.3:95520853-95520872 None:intergenic 25.0%
! ATTATTCATCAATATGCTAC+TGG - chr3.3:95517475-95517494 MS.gene063116:intron 25.0%
! ATTGACATTGTTGTGAATAA+GGG - chr3.3:95518929-95518948 MS.gene063116:intron 25.0%
! CAAATAAATCTTCAGATGAA+TGG + chr3.3:95518805-95518824 None:intergenic 25.0%
! CATCAATGTTTCATATTCTT+TGG + chr3.3:95520030-95520049 None:intergenic 25.0%
! CATTCATCTGAAGATTTATT+TGG - chr3.3:95518803-95518822 MS.gene063116:intron 25.0%
! GAAAATACCTTTATAGTTAC+TGG + chr3.3:95519031-95519050 None:intergenic 25.0%
! GATGTTATAAAAGATGATGA+TGG - chr3.3:95517890-95517909 MS.gene063116:intron 25.0%
! TATCTTAAGCAAACATATTG+CGG + chr3.3:95519213-95519232 None:intergenic 25.0%
! TATTCACAACAATGTCAATA+GGG + chr3.3:95518928-95518947 None:intergenic 25.0%
! TATTGACATTGTTGTGAATA+AGG - chr3.3:95518928-95518947 MS.gene063116:intron 25.0%
! TGTTTATTAATTTACAAGGG+GGG - chr3.3:95516926-95516945 MS.gene063116:intron 25.0%
! TTATGTAGATGCAACAAATT+TGG - chr3.3:95519983-95520002 MS.gene063116:intron 25.0%
! TTATTCACAACAATGTCAAT+AGG + chr3.3:95518929-95518948 None:intergenic 25.0%
! TTTATCTCTGTAAATATCCA+GGG + chr3.3:95519700-95519719 None:intergenic 25.0%
!! AATAATGATCGATTCAAATG+TGG + chr3.3:95517675-95517694 None:intergenic 25.0%
!! AATCTTTATTTCGATAAGAG+AGG + chr3.3:95520633-95520652 None:intergenic 25.0%
!! ACTAAGAGCATATAATTTGT+GGG - chr3.3:95520071-95520090 MS.gene063116:intron 25.0%
!! ATCTTTATTTCGATAAGAGA+GGG + chr3.3:95520632-95520651 None:intergenic 25.0%
!! CGATTCTTTTTATTATACAC+AGG - chr3.3:95520864-95520883 MS.gene063116:CDS 25.0%
!! TAAGCATTTGATTTATGCTT+TGG + chr3.3:95520943-95520962 None:intergenic 25.0%
!! TTCAAAGATTTTGTGCATTT+TGG - chr3.3:95519766-95519785 MS.gene063116:intron 25.0%
!!! AAAAGAAGCTTATTGATTTC+AGG - chr3.3:95518234-95518253 MS.gene063116:intron 25.0%
!!! AAAATTTTTCAAAACTCTGC+TGG - chr3.3:95518600-95518619 MS.gene063116:CDS 25.0%
!!! AAAGAAGCTTATTGATTTCA+GGG - chr3.3:95518235-95518254 MS.gene063116:intron 25.0%
!!! AAATTTGTTGCATCTACATA+AGG + chr3.3:95519984-95520003 None:intergenic 25.0%
!!! AAATTTTTCAAAACTCTGCT+GGG - chr3.3:95518601-95518620 MS.gene063116:CDS 25.0%
!!! ATGTTTTTTCATTTGTAGAC+TGG - chr3.3:95519454-95519473 MS.gene063116:CDS 25.0%
!!! TAACAAGATTTTTTTTGTCC+TGG + chr3.3:95519177-95519196 None:intergenic 25.0%
!!! TATTATATGCTGTGTTTTAG+GGG - chr3.3:95520236-95520255 MS.gene063116:intron 25.0%
!!! TGTTGTTTTTTTCTAGCAAA+TGG + chr3.3:95520167-95520186 None:intergenic 25.0%
AACATTGATGAGTGTATAAG+GGG - chr3.3:95520040-95520059 MS.gene063116:intron 30.0%
AAGACAAATACCAAACTATG+TGG + chr3.3:95518487-95518506 None:intergenic 30.0%
ACTTTAGTGCTTATAGTCTA+TGG - chr3.3:95518023-95518042 MS.gene063116:CDS 30.0%
AGACAAATACCAAACTATGT+GGG + chr3.3:95518486-95518505 None:intergenic 30.0%
AGCTGTTGAACTAATAGAAA+AGG - chr3.3:95518865-95518884 MS.gene063116:intron 30.0%
ATCCTGAGTATGATGTATAT+AGG - chr3.3:95518412-95518431 MS.gene063116:CDS 30.0%
ATGAATAATTACAAGCGCAT+TGG + chr3.3:95517464-95517483 None:intergenic 30.0%
CAAGAAAACTGGAAACAAAA+GGG + chr3.3:95520439-95520458 None:intergenic 30.0%
CACTACTTGCAAATTATTAG+GGG + chr3.3:95519424-95519443 None:intergenic 30.0%
CCACTACTTGCAAATTATTA+GGG + chr3.3:95519425-95519444 None:intergenic 30.0%
CGATATTCCAGTAACTATAA+AGG - chr3.3:95519021-95519040 MS.gene063116:intron 30.0%
CTGGATATTTACAGAGATAA+AGG - chr3.3:95519699-95519718 MS.gene063116:CDS 30.0%
CTTTATCTCTGTAAATATCC+AGG + chr3.3:95519701-95519720 None:intergenic 30.0%
GAAACATTGATGAGTGTATA+AGG - chr3.3:95520038-95520057 MS.gene063116:intron 30.0%
GAACGTTGAAACCTTAATAT+AGG - chr3.3:95518559-95518578 MS.gene063116:CDS 30.0%
GACTACATGTAAAAGATTGA+AGG + chr3.3:95520139-95520158 None:intergenic 30.0%
GCAAAAGAAAAGAAAAGATG+AGG + chr3.3:95518686-95518705 None:intergenic 30.0%
GGACACAATGAAATTTGTAT+CGG - chr3.3:95519070-95519089 MS.gene063116:intron 30.0%
TAACTTTAATAAGTGCACCA+CGG + chr3.3:95519527-95519546 None:intergenic 30.0%
TAATAAAGGAACACTGACAA+AGG + chr3.3:95517551-95517570 None:intergenic 30.0%
TCAACTAGAATTGAATGCAA+AGG + chr3.3:95518075-95518094 None:intergenic 30.0%
TCAAGAAAACTGGAAACAAA+AGG + chr3.3:95520440-95520459 None:intergenic 30.0%
TCCTGAGTATGATGTATATA+GGG - chr3.3:95518413-95518432 MS.gene063116:CDS 30.0%
TTCAATCCGTTAGAAGATAA+AGG + chr3.3:95517079-95517098 None:intergenic 30.0%
TTGCATGAATAGAGAAGAAA+GGG + chr3.3:95520688-95520707 None:intergenic 30.0%
TTTGCATGAATAGAGAAGAA+AGG + chr3.3:95520689-95520708 None:intergenic 30.0%
TTTGTTTAACAGGATGTAGT+TGG - chr3.3:95520739-95520758 MS.gene063116:intron 30.0%
! AAACGACAGTTTTCTTGATA+AGG + chr3.3:95516838-95516857 None:intergenic 30.0%
! AAACTATTTTCTGCTGTCTT+CGG + chr3.3:95520721-95520740 None:intergenic 30.0%
! AAGATGTTCAGAAGCTTTTA+TGG - chr3.3:95517128-95517147 MS.gene063116:CDS 30.0%
! CCTAATAATTTGCAAGTAGT+GGG - chr3.3:95519423-95519442 MS.gene063116:intron 30.0%
! CTAATAATTTGCAAGTAGTG+GGG - chr3.3:95519424-95519443 MS.gene063116:intron 30.0%
! GACTAAGAGCATATAATTTG+TGG - chr3.3:95520070-95520089 MS.gene063116:intron 30.0%
! TGCGGTTTTTCTTTTCTTTT+GGG + chr3.3:95517951-95517970 None:intergenic 30.0%
! TTTCTAGTGTACTACTATGT+AGG + chr3.3:95517437-95517456 None:intergenic 30.0%
!! TATTTGGTGTACAAATCTGT+GGG - chr3.3:95518819-95518838 MS.gene063116:intron 30.0%
!! TTATTTGGTGTACAAATCTG+TGG - chr3.3:95518818-95518837 MS.gene063116:intron 30.0%
!! TTTATCTTCTAACGGATTGA+AGG - chr3.3:95517078-95517097 MS.gene063116:CDS 30.0%
!!! ACTGTTTAGTGTTTGTTTTG+AGG + chr3.3:95519924-95519943 None:intergenic 30.0%
!!! GTATATTTTATTGGTGCTGA+TGG - chr3.3:95519818-95519837 MS.gene063116:intron 30.0%
AAATTGTGAAGATGAGGAGA+CGG - chr3.3:95517973-95517992 MS.gene063116:CDS 35.0%
AACTTTAATAAGTGCACCAC+GGG + chr3.3:95519526-95519545 None:intergenic 35.0%
AATCTACAGGATAACCCATA+AGG + chr3.3:95517031-95517050 None:intergenic 35.0%
AATGCCGTCAAAAACAAAGA+TGG - chr3.3:95517713-95517732 MS.gene063116:CDS 35.0%
ACCTAGTGCAATAGATGAAT+GGG + chr3.3:95519243-95519262 None:intergenic 35.0%
AGGCATAACATGAACAACAA+CGG + chr3.3:95517232-95517251 None:intergenic 35.0%
AGTAGTAGAAGTAGTTCGAT+CGG + chr3.3:95516587-95516606 None:intergenic 35.0%
AGTTCAAAGTTCCAGAACAT+AGG + chr3.3:95519121-95519140 None:intergenic 35.0%
ATCTACAGGATAACCCATAA+GGG + chr3.3:95517030-95517049 None:intergenic 35.0%
ATTACGTATATCAGTGTACC+AGG - chr3.3:95519394-95519413 MS.gene063116:intron 35.0%
CAGAACAAAACAAAGAGGAT+GGG + chr3.3:95518652-95518671 None:intergenic 35.0%
CATAAAATGAGATCGAGACA+AGG + chr3.3:95519559-95519578 None:intergenic 35.0%
CCATGATATTCAAGCATTCA+AGG - chr3.3:95516861-95516880 MS.gene063116:intron 35.0%
CCCACTACTTGCAAATTATT+AGG + chr3.3:95519426-95519445 None:intergenic 35.0%
CCTTGAATGCTTGAATATCA+TGG + chr3.3:95516864-95516883 None:intergenic 35.0%
CGATTATCAGAGATGTTACT+TGG - chr3.3:95520889-95520908 MS.gene063116:CDS 35.0%
CTAATACTTTGCAAACTCTC+CGG + chr3.3:95518307-95518326 None:intergenic 35.0%
GAAGCTATCAAGATGCTAAA+TGG + chr3.3:95519099-95519118 None:intergenic 35.0%
GGTAAGCCTTTATCTTCTAA+CGG - chr3.3:95517070-95517089 MS.gene063116:CDS 35.0%
TAATGCTAGTTGTCTTCATC+AGG - chr3.3:95519603-95519622 MS.gene063116:CDS 35.0%
TACCTAGTGCAATAGATGAA+TGG + chr3.3:95519244-95519263 None:intergenic 35.0%
TAGCTTCATATTGCTGAAAC+AGG - chr3.3:95518098-95518117 MS.gene063116:CDS 35.0%
TATTCAAGCATTCAAGGAAC+AGG - chr3.3:95516867-95516886 MS.gene063116:intron 35.0%
TCAAGCTTAGATCAGTTTCT+GGG + chr3.3:95518199-95518218 None:intergenic 35.0%
TCCATGCTAAATGCAACAAT+AGG - chr3.3:95519049-95519068 MS.gene063116:intron 35.0%
TCCCTATATACATCATACTC+AGG + chr3.3:95518417-95518436 None:intergenic 35.0%
TCCTATTGTTGCATTTAGCA+TGG + chr3.3:95519053-95519072 None:intergenic 35.0%
TGAAATAACATGCGGTGAAA+TGG - chr3.3:95518331-95518350 MS.gene063116:intron 35.0%
TGAGATAGTATATCCTCCAT+AGG - chr3.3:95518533-95518552 MS.gene063116:CDS 35.0%
TGGTTCCACAACGAATAAAT+TGG - chr3.3:95520334-95520353 MS.gene063116:CDS 35.0%
TGTCTTATGCCAAGAATGAA+CGG - chr3.3:95519957-95519976 MS.gene063116:intron 35.0%
TTAGGAGCTGAAATAACATG+CGG - chr3.3:95518323-95518342 MS.gene063116:intron 35.0%
TTCAAGCTTAGATCAGTTTC+TGG + chr3.3:95518200-95518219 None:intergenic 35.0%
TTCATCTATTGCACTAGGTA+CGG - chr3.3:95519244-95519263 MS.gene063116:CDS 35.0%
TTGTGCAGAACAAAACAAAG+AGG + chr3.3:95518657-95518676 None:intergenic 35.0%
TTTAACAGGATGTAGTTGGT+AGG - chr3.3:95520743-95520762 MS.gene063116:intron 35.0%
TTTGTCCTGGAAAACGTAAA+AGG + chr3.3:95519164-95519183 None:intergenic 35.0%
! AAGGAAAGGTGTGAAGTTAA+TGG - chr3.3:95517097-95517116 MS.gene063116:CDS 35.0%
! AATGTGCACAAATCTTTTGG+AGG - chr3.3:95518355-95518374 MS.gene063116:intron 35.0%
! ACAGTTTTCTTGATAAGGAC+AGG + chr3.3:95516833-95516852 None:intergenic 35.0%
! CCCTAATAATTTGCAAGTAG+TGG - chr3.3:95519422-95519441 MS.gene063116:intron 35.0%
! CCTTTGATGTAAAGAAGTGT+CGG - chr3.3:95517386-95517405 MS.gene063116:intron 35.0%
! CTCATCTTCACAATTTTCTG+CGG + chr3.3:95517969-95517988 None:intergenic 35.0%
! CTGCGGTTTTTCTTTTCTTT+TGG + chr3.3:95517952-95517971 None:intergenic 35.0%
! CTTGTCTCGATCTCATTTTA+TGG - chr3.3:95519557-95519576 MS.gene063116:CDS 35.0%
! GCGGTTTTTCTTTTCTTTTG+GGG + chr3.3:95517950-95517969 None:intergenic 35.0%
! TAATTTACAAGGGGGGTTTT+TGG - chr3.3:95516933-95516952 MS.gene063116:intron 35.0%
! TAGCAATTATGAATTCGGTG+AGG + chr3.3:95517263-95517282 None:intergenic 35.0%
! TTGAGTTTGGCATCAGTTTT+GGG + chr3.3:95517172-95517191 None:intergenic 35.0%
!! ATAGCAAACTTTAGCTCTTG+GGG - chr3.3:95519306-95519325 MS.gene063116:CDS 35.0%
!! ATTTGGTGTACAAATCTGTG+GGG - chr3.3:95518820-95518839 MS.gene063116:intron 35.0%
!! CATTTTGGTCTTCAACATTG+GGG - chr3.3:95519781-95519800 MS.gene063116:intron 35.0%
!! GATAGCAAACTTTAGCTCTT+GGG - chr3.3:95519305-95519324 MS.gene063116:CDS 35.0%
!! GCATTTTGGTCTTCAACATT+GGG - chr3.3:95519780-95519799 MS.gene063116:intron 35.0%
!! TGATAGCAAACTTTAGCTCT+TGG - chr3.3:95519304-95519323 MS.gene063116:CDS 35.0%
!! TGCATTTTGGTCTTCAACAT+TGG - chr3.3:95519779-95519798 MS.gene063116:intron 35.0%
!! TTTCTTTTCTTTTGGGGACA+AGG + chr3.3:95517944-95517963 None:intergenic 35.0%
!! TTTGAGTTTGGCATCAGTTT+TGG + chr3.3:95517173-95517192 None:intergenic 35.0%
!!! ACCACCATCTTTGTTTTTGA+CGG + chr3.3:95517720-95517739 None:intergenic 35.0%
!!! GTCCTTTTCTGAAATCTGAA+GGG - chr3.3:95516999-95517018 MS.gene063116:intron 35.0%
!!! TCCTTTTCTGAAATCTGAAG+GGG - chr3.3:95517000-95517019 MS.gene063116:intron 35.0%
!!! TGTCCTTTTCTGAAATCTGA+AGG - chr3.3:95516998-95517017 MS.gene063116:intron 35.0%
AAAACAAAGAGGATGGGAGA+AGG + chr3.3:95518646-95518665 None:intergenic 40.0%
AAACACAGACTTGTCGATAG+TGG - chr3.3:95517285-95517304 MS.gene063116:intron 40.0%
AACTTAGAATCTGAGTCAGC+AGG + chr3.3:95517857-95517876 None:intergenic 40.0%
AATAGGGTCAAGCTTCAGAA+TGG - chr3.3:95518765-95518784 MS.gene063116:intron 40.0%
AATGGCTTAGCTACACTTGT+AGG - chr3.3:95520286-95520305 MS.gene063116:CDS 40.0%
ACATAAGGACCGTTCATTCT+TGG + chr3.3:95519969-95519988 None:intergenic 40.0%
ACCCATTCATCTATTGCACT+AGG - chr3.3:95519239-95519258 MS.gene063116:CDS 40.0%
ACTCAAAACTCTTGGTCTCT+TGG - chr3.3:95517186-95517205 MS.gene063116:intron 40.0%
ACTTGGCAATGTTTGGACAA+AGG + chr3.3:95516795-95516814 None:intergenic 40.0%
ACTTGTAGGTACATACCTGT+TGG - chr3.3:95520300-95520319 MS.gene063116:CDS 40.0%
AGATAAAGGAACAGCGACAT+TGG - chr3.3:95519713-95519732 MS.gene063116:CDS 40.0%
AGATTTCCAACAGTGGTCAA+GGG + chr3.3:95518278-95518297 None:intergenic 40.0%
AGTGCAGAAATTGGCTGATT+TGG - chr3.3:95516967-95516986 MS.gene063116:intron 40.0%
AGTGTTGTAGAAGTAGCTTC+AGG - chr3.3:95518992-95519011 MS.gene063116:intron 40.0%
ATAAGATCTGAATCAGAGGC+AGG - chr3.3:95518158-95518177 MS.gene063116:CDS 40.0%
ATAGGGTCAAGCTTCAGAAT+GGG - chr3.3:95518766-95518785 MS.gene063116:intron 40.0%
ATGCATAGCTCCTGTTAAGA+AGG - chr3.3:95516543-95516562 MS.gene063116:CDS 40.0%
ATGTGGGAATTGCCTGAAAT+TGG + chr3.3:95518470-95518489 None:intergenic 40.0%
CAAATTATTAGGGGCTTTCC+TGG + chr3.3:95519415-95519434 None:intergenic 40.0%
CAAGCTTAGATCAGTTTCTG+GGG + chr3.3:95518198-95518217 None:intergenic 40.0%
CATTGGGGTTCAGATACAAA+AGG - chr3.3:95519796-95519815 MS.gene063116:intron 40.0%
CCGACACTTCTTTACATCAA+AGG + chr3.3:95517389-95517408 None:intergenic 40.0%
CGAATGAAGTCCTTCTTAAC+AGG + chr3.3:95516556-95516575 None:intergenic 40.0%
CGCAGAAAATTGTGAAGATG+AGG - chr3.3:95517967-95517986 MS.gene063116:CDS 40.0%
CTGCATAAGATCTGAATCAG+AGG - chr3.3:95518154-95518173 MS.gene063116:CDS 40.0%
CTGGAAAACGTAAAAGGACT+TGG + chr3.3:95519158-95519177 None:intergenic 40.0%
GACTTGGAAAACAAAGACGA+TGG - chr3.3:95517788-95517807 MS.gene063116:intron 40.0%
GATAAAGGAACAGCGACATT+GGG - chr3.3:95519714-95519733 MS.gene063116:CDS 40.0%
GATGCCAAACTCAAAACTCT+TGG - chr3.3:95517178-95517197 MS.gene063116:intron 40.0%
GCAGAACAAAACAAAGAGGA+TGG + chr3.3:95518653-95518672 None:intergenic 40.0%
GCGTTTAGATTTCTTCTCCT+TGG + chr3.3:95516644-95516663 None:intergenic 40.0%
GCTTACGATAGAGCTGAAAA+TGG - chr3.3:95520958-95520977 MS.gene063116:CDS 40.0%
GGAATTAACATCACCTGACT+TGG + chr3.3:95516812-95516831 None:intergenic 40.0%
GGCATAACATGAACAACAAC+GGG + chr3.3:95517231-95517250 None:intergenic 40.0%
GGTTTCAACGTTCAAACCTA+TGG + chr3.3:95518552-95518571 None:intergenic 40.0%
GTAGTAGAAGTAGTTCGATC+GGG + chr3.3:95516586-95516605 None:intergenic 40.0%
GTTCATTCTTGGCATAAGAC+AGG + chr3.3:95519958-95519977 None:intergenic 40.0%
TCACTCTGTATGTATTCTGC+AGG - chr3.3:95516750-95516769 MS.gene063116:intron 40.0%
TCAGGAGCAATATTGTTGCA+TGG - chr3.3:95519621-95519640 MS.gene063116:CDS 40.0%
TCGATGATGAGTGCAGAAAT+TGG - chr3.3:95516958-95516977 MS.gene063116:intron 40.0%
TGATGACAATGGTTCTTGTG+CGG - chr3.3:95517757-95517776 MS.gene063116:intron 40.0%
TGTGTTTCGTCTGATGACAA+TGG - chr3.3:95517746-95517765 MS.gene063116:intron 40.0%
TTACTTGGCAAAGTTCCAGA+TGG - chr3.3:95520904-95520923 MS.gene063116:CDS 40.0%
TTCAACGTTCAAACCTATGG+AGG + chr3.3:95518549-95518568 None:intergenic 40.0%
! AATTCGGTGAGGAAAATGAG+AGG + chr3.3:95517252-95517271 None:intergenic 40.0%
! AATTTGCAAGTAGTGGGGAA+TGG - chr3.3:95519429-95519448 MS.gene063116:intron 40.0%
! ACAACACTTTTCATGCGCAT+TGG + chr3.3:95518980-95518999 None:intergenic 40.0%
! ATTGTTGTGAATAAGGGTGC+TGG - chr3.3:95518935-95518954 MS.gene063116:intron 40.0%
! CAAGTCCTTTTACGTTTTCC+AGG - chr3.3:95519156-95519175 MS.gene063116:CDS 40.0%
! CGGAGAGTTTGCAAAGTATT+AGG - chr3.3:95518305-95518324 MS.gene063116:intron 40.0%
! CTTGATAGCTTCCTATGTTC+TGG - chr3.3:95519107-95519126 MS.gene063116:CDS 40.0%
! CTTTACATCAAAGGCATGTC+CGG + chr3.3:95517380-95517399 None:intergenic 40.0%
! GGCAATGTGCACAAATCTTT+TGG - chr3.3:95518352-95518371 MS.gene063116:intron 40.0%
! TGAGTTTGGCATCAGTTTTG+GGG + chr3.3:95517171-95517190 None:intergenic 40.0%
!! CAGAAATTGGCTGATTTGGA+GGG - chr3.3:95516971-95516990 MS.gene063116:intron 40.0%
!! CTTCTAACGGATTGAAGGAA+AGG - chr3.3:95517083-95517102 MS.gene063116:CDS 40.0%
!! GAGTGTTGATGACCAAATTG+TGG - chr3.3:95518124-95518143 MS.gene063116:CDS 40.0%
!! GTTGATGACCAAATTGTGGA+CGG - chr3.3:95518128-95518147 MS.gene063116:CDS 40.0%
!! TACGGACAGCGTATTTTGAA+GGG - chr3.3:95519262-95519281 MS.gene063116:CDS 40.0%
!! TGTGGGAGTATCTTGTAAGA+GGG - chr3.3:95520088-95520107 MS.gene063116:intron 40.0%
!! TTGTGGGAGTATCTTGTAAG+AGG - chr3.3:95520087-95520106 MS.gene063116:intron 40.0%
!! TTTTGGGGACAAGGTATATC+AGG + chr3.3:95517935-95517954 None:intergenic 40.0%
!!! GAGACCAAGAGTTTTGAGTT+TGG + chr3.3:95517185-95517204 None:intergenic 40.0%
!!! GTACATACCTGTTGGTCTTT+TGG - chr3.3:95520308-95520327 MS.gene063116:CDS 40.0%
!!! TATATGCTGTGTTTTAGGGG+TGG - chr3.3:95520239-95520258 MS.gene063116:intron 40.0%
AAACGTGAACGTCTTCAGGT+AGG - chr3.3:95516670-95516689 MS.gene063116:intron 45.0%
ACCACATCCAAAAGACCAAC+AGG + chr3.3:95520318-95520337 None:intergenic 45.0%
ACTCAAACGTGAACGTCTTC+AGG - chr3.3:95516666-95516685 MS.gene063116:intron 45.0%
ACTTTGCAAACTCTCCGGAA+AGG + chr3.3:95518302-95518321 None:intergenic 45.0%
ATCAAGCATGTGGCAAGTTC+AGG + chr3.3:95519501-95519520 None:intergenic 45.0%
CAGGCAATTCCCACATAGTT+TGG - chr3.3:95518474-95518493 MS.gene063116:CDS 45.0%
CTGTTGGAAATCTCCCTTTC+CGG - chr3.3:95518285-95518304 MS.gene063116:intron 45.0%
CTTTGCAAACTCTCCGGAAA+GGG + chr3.3:95518301-95518320 None:intergenic 45.0%
GAAAGGGAGATTTCCAACAG+TGG + chr3.3:95518285-95518304 None:intergenic 45.0%
GAAGACGTTCACGTTTGAGT+TGG + chr3.3:95516666-95516685 None:intergenic 45.0%
GAGATTTCCAACAGTGGTCA+AGG + chr3.3:95518279-95518298 None:intergenic 45.0%
GATGAGGAGACGGAAAATGA+AGG - chr3.3:95517983-95518002 MS.gene063116:CDS 45.0%
GCCCCTTCAGATTTCAGAAA+AGG + chr3.3:95517004-95517023 None:intergenic 45.0%
GCCGTCAAAAACAAAGATGG+TGG - chr3.3:95517716-95517735 MS.gene063116:CDS 45.0%
GCTAGTGCAGTGACAATACA+TGG - chr3.3:95519330-95519349 MS.gene063116:intron 45.0%
GGACGCCAATTTATTCGTTG+TGG + chr3.3:95520342-95520361 None:intergenic 45.0%
GGTGCAAAAGTAAAGCCATC+TGG + chr3.3:95520922-95520941 None:intergenic 45.0%
TATACGTAATCCCAGTCAGC+AGG + chr3.3:95519384-95519403 None:intergenic 45.0%
TCAAGCATGTGGCAAGTTCA+GGG + chr3.3:95519500-95519519 None:intergenic 45.0%
TCGTTTAACAGTATGGGACC+AGG + chr3.3:95520847-95520866 None:intergenic 45.0%
TCTTGCGATCAGTTGTTCGA+TGG + chr3.3:95516524-95516543 None:intergenic 45.0%
TGACAATACATGGCAGGTCA+CGG - chr3.3:95519340-95519359 MS.gene063116:intron 45.0%
TGAGTGTATAAGGGGTCTCT+TGG - chr3.3:95520048-95520067 MS.gene063116:intron 45.0%
TGTCCAAACATTGCCAAGTC+AGG - chr3.3:95516796-95516815 MS.gene063116:intron 45.0%
TTCTGCTGTCTTCGGATAGA+GGG + chr3.3:95520713-95520732 None:intergenic 45.0%
TTGTGCGGTTACATCTGACT+TGG - chr3.3:95517772-95517791 MS.gene063116:intron 45.0%
TTTCAAAACTCTGCTGGGAC+TGG - chr3.3:95518606-95518625 MS.gene063116:CDS 45.0%
TTTCTGCTGTCTTCGGATAG+AGG + chr3.3:95520714-95520733 None:intergenic 45.0%
TTTCTTCTCCTTGGCGAGAA+CGG + chr3.3:95516635-95516654 None:intergenic 45.0%
!! GCAGAAATTGGCTGATTTGG+AGG - chr3.3:95516970-95516989 MS.gene063116:intron 45.0%
!! GTACGGACAGCGTATTTTGA+AGG - chr3.3:95519261-95519280 MS.gene063116:CDS 45.0%
!! GTTCAGGGCATTCAGTTTTG+TGG + chr3.3:95519485-95519504 None:intergenic 45.0%
!! TCACCTGACTTGGCAATGTT+TGG + chr3.3:95516802-95516821 None:intergenic 45.0%
!!! ACCTGTTGGTCTTTTGGATG+TGG - chr3.3:95520314-95520333 MS.gene063116:CDS 45.0%
!!! AAATTTTATTACTAAATTAT+TGG + chr3.3:95518587-95518606 None:intergenic 5.0%
!!! ATCTATTAATTTTTTTAAAA+TGG - chr3.3:95520512-95520531 MS.gene063116:intron 5.0%
AGAACGGGAGGTTTGTCGTT+AGG + chr3.3:95516619-95516638 None:intergenic 50.0%
AGCCGTCATCATCAGACTGA+TGG + chr3.3:95517823-95517842 None:intergenic 50.0%
AGGTTTGTCGTTAGGAGCAG+AGG + chr3.3:95516611-95516630 None:intergenic 50.0%
CATTGTCGTGTCAGCGTTTC+GGG - chr3.3:95517352-95517371 MS.gene063116:intron 50.0%
CCATTGTCGTGTCAGCGTTT+CGG - chr3.3:95517351-95517370 MS.gene063116:intron 50.0%
CGACATTGGGACATCAGTTC+TGG - chr3.3:95519727-95519746 MS.gene063116:CDS 50.0%
GGATGACCTTGAGACACTGA+TGG - chr3.3:95520380-95520399 MS.gene063116:CDS 50.0%
GGCGTCCACCATCTTACTAT+GGG - chr3.3:95520355-95520374 MS.gene063116:CDS 50.0%
GGGCACATCCAGATACTGTA+GGG - chr3.3:95518840-95518859 MS.gene063116:intron 50.0%
GTAGAAGTAGTTCGATCGGG+AGG + chr3.3:95516583-95516602 None:intergenic 50.0%
GTCCACCATCTTACTATGGG+CGG - chr3.3:95520358-95520377 MS.gene063116:CDS 50.0%
GTGCAGTGACAATACATGGC+AGG - chr3.3:95519334-95519353 MS.gene063116:intron 50.0%
TCATCCCGCCCATAGTAAGA+TGG + chr3.3:95520366-95520385 None:intergenic 50.0%
TCCACCATCTTACTATGGGC+GGG - chr3.3:95520359-95520378 MS.gene063116:CDS 50.0%
TGCAGCTTCCGTCCACAATT+TGG + chr3.3:95518139-95518158 None:intergenic 50.0%
TGGCGTCCACCATCTTACTA+TGG - chr3.3:95520354-95520373 MS.gene063116:CDS 50.0%
TTCTTCTCCTTGGCGAGAAC+GGG + chr3.3:95516634-95516653 None:intergenic 50.0%
! CGCCATCAGTCTGATGATGA+CGG - chr3.3:95517818-95517837 MS.gene063116:intron 50.0%
! CTATAGCAAGCCTGCTGACT+GGG - chr3.3:95519371-95519390 MS.gene063116:intron 50.0%
!! CTGATGATGACGGCTCTTGT+GGG - chr3.3:95517828-95517847 MS.gene063116:intron 50.0%
!! GGACAGCGTATTTTGAAGGG+AGG - chr3.3:95519265-95519284 MS.gene063116:CDS 50.0%
!! TCTGATGATGACGGCTCTTG+TGG - chr3.3:95517827-95517846 MS.gene063116:intron 50.0%
!! TGATGATGACGGCTCTTGTG+GGG - chr3.3:95517829-95517848 MS.gene063116:intron 50.0%
!! TTTTAGGGGTGGAGACTACC+AGG - chr3.3:95520250-95520269 MS.gene063116:CDS 50.0%
ACAGCTCGCCCTACAGTATC+TGG + chr3.3:95518851-95518870 None:intergenic 55.0%
ACCACGGGCAATCAAGCATG+TGG + chr3.3:95519511-95519530 None:intergenic 55.0%
AGGGTGGCGAGGATGATTCT+GGG - chr3.3:95516470-95516489 MS.gene063116:CDS 55.0%
CCAGGCGGTTCTTGTTGGAA+TGG - chr3.3:95520268-95520287 MS.gene063116:CDS 55.0%
CCATTCCAACAAGAACCGCC+TGG + chr3.3:95520271-95520290 None:intergenic 55.0%
CCGAAACGCTGACACGACAA+TGG + chr3.3:95517354-95517373 None:intergenic 55.0%
CTGAAGGGGCTTGCCCTTAT+GGG - chr3.3:95517014-95517033 MS.gene063116:intron 55.0%
CTTGCACCCTTGACCACTGT+TGG - chr3.3:95518269-95518288 MS.gene063116:intron 55.0%
GAAGTAGTTCGATCGGGAGG+AGG + chr3.3:95516580-95516599 None:intergenic 55.0%
GACTACCAGGCGGTTCTTGT+TGG - chr3.3:95520263-95520282 MS.gene063116:CDS 55.0%
GCTATAGCAAGCCTGCTGAC+TGG - chr3.3:95519370-95519389 MS.gene063116:intron 55.0%
GGGGCACATCCAGATACTGT+AGG - chr3.3:95518839-95518858 MS.gene063116:intron 55.0%
TACCCAGTCAGCTGCAGAGT+CGG + chr3.3:95520409-95520428 None:intergenic 55.0%
TCCCGCCCATAGTAAGATGG+TGG + chr3.3:95520363-95520382 None:intergenic 55.0%
TCTGAAGGGGCTTGCCCTTA+TGG - chr3.3:95517013-95517032 MS.gene063116:intron 55.0%
! GGCGAGGATGATTCTGGGAA+GGG - chr3.3:95516475-95516494 MS.gene063116:CDS 55.0%
! TGGCGAGGATGATTCTGGGA+AGG - chr3.3:95516474-95516493 MS.gene063116:CDS 55.0%
ATGACTGCTGTGTGCAGCCC+TGG - chr3.3:95519680-95519699 MS.gene063116:CDS 60.0%
CAAACCTCCCGTTCTCGCCA+AGG - chr3.3:95516624-95516643 MS.gene063116:intron 60.0%
CGGAGGCCATCAGTGTCTCA+AGG + chr3.3:95520389-95520408 None:intergenic 60.0%
CTCCGACTCTGCAGCTGACT+GGG - chr3.3:95520404-95520423 MS.gene063116:CDS 60.0%
GAGGGTGGCGAGGATGATTC+TGG - chr3.3:95516469-95516488 MS.gene063116:CDS 60.0%
GCCACATGCTTGATTGCCCG+TGG - chr3.3:95519507-95519526 MS.gene063116:CDS 60.0%
TAGGGGTGGAGACTACCAGG+CGG - chr3.3:95520253-95520272 MS.gene063116:CDS 60.0%
TTCTCCTTGGCGAGAACGGG+AGG + chr3.3:95516631-95516650 None:intergenic 60.0%
CCAGTCAGCTGCAGAGTCGG+AGG + chr3.3:95520406-95520425 None:intergenic 65.0%
CCTCCGACTCTGCAGCTGAC+TGG - chr3.3:95520403-95520422 MS.gene063116:CDS 65.0%
CGTGTCAGCGTTTCGGGCAC+CGG - chr3.3:95517358-95517377 MS.gene063116:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 95516466 95520984 95516466 ID=MS.gene063116
chr3.3 mRNA 95516466 95520984 95516466 ID=MS.gene063116.t1;Parent=MS.gene063116
chr3.3 exon 95520763 95520984 95520763 ID=MS.gene063116.t1.exon1;Parent=MS.gene063116.t1
chr3.3 CDS 95520763 95520984 95520763 ID=cds.MS.gene063116.t1;Parent=MS.gene063116.t1
chr3.3 exon 95520562 95520678 95520562 ID=MS.gene063116.t1.exon2;Parent=MS.gene063116.t1
chr3.3 CDS 95520562 95520678 95520562 ID=cds.MS.gene063116.t1;Parent=MS.gene063116.t1
chr3.3 exon 95520243 95520476 95520243 ID=MS.gene063116.t1.exon3;Parent=MS.gene063116.t1
chr3.3 CDS 95520243 95520476 95520243 ID=cds.MS.gene063116.t1;Parent=MS.gene063116.t1
chr3.3 exon 95519446 95519752 95519446 ID=MS.gene063116.t1.exon4;Parent=MS.gene063116.t1
chr3.3 CDS 95519446 95519752 95519446 ID=cds.MS.gene063116.t1;Parent=MS.gene063116.t1
chr3.3 exon 95519074 95519330 95519074 ID=MS.gene063116.t1.exon5;Parent=MS.gene063116.t1
chr3.3 CDS 95519074 95519330 95519074 ID=cds.MS.gene063116.t1;Parent=MS.gene063116.t1
chr3.3 exon 95518408 95518680 95518408 ID=MS.gene063116.t1.exon6;Parent=MS.gene063116.t1
chr3.3 CDS 95518408 95518680 95518408 ID=cds.MS.gene063116.t1;Parent=MS.gene063116.t1
chr3.3 exon 95517908 95518189 95517908 ID=MS.gene063116.t1.exon7;Parent=MS.gene063116.t1
chr3.3 CDS 95517908 95518189 95517908 ID=cds.MS.gene063116.t1;Parent=MS.gene063116.t1
chr3.3 exon 95517633 95517753 95517633 ID=MS.gene063116.t1.exon8;Parent=MS.gene063116.t1
chr3.3 CDS 95517633 95517753 95517633 ID=cds.MS.gene063116.t1;Parent=MS.gene063116.t1
chr3.3 exon 95517025 95517194 95517025 ID=MS.gene063116.t1.exon9;Parent=MS.gene063116.t1
chr3.3 CDS 95517025 95517194 95517025 ID=cds.MS.gene063116.t1;Parent=MS.gene063116.t1
chr3.3 exon 95516466 95516564 95516466 ID=MS.gene063116.t1.exon10;Parent=MS.gene063116.t1
chr3.3 CDS 95516466 95516564 95516466 ID=cds.MS.gene063116.t1;Parent=MS.gene063116.t1
Gene Sequence

>MS.gene063116

ATGGAGGGTGGCGAGGATGATTCTGGGAAGGGAAGTACTTTAGTGATTCATCAAACCATCGAACAACTGATCGCAAGATGCATAGCTCCTGTTAAGAAGGACTTCATTCGTCCTCCTCCCGATCGAACTACTTCTACTACTTCCTCTGCTCCTAACGACAAACCTCCCGTTCTCGCCAAGGAGAAGAAATCTAAACGCCAACTCAAACGTGAACGTCTTCAGGTAGGTACCCTTCTTTTCTATATAAATAGCTTATATTAGACAACTTATTATTATGAACAATGTCACTCTGTATGTATTCTGCAGGATAAAAAATCAACAAAAAACCTTTGTCCAAACATTGCCAAGTCAGGTGATGTTAATTCCTGTCCTTATCAAGAAAACTGTCGTTTCAGCCATGATATTCAAGCATTCAAGGAACAGGTAGTTATTACTTATTACTGCATTCTCAAATCTCAATTGTTTATTAATTTACAAGGGGGGTTTTTGGTTTCGATGATGAGTGCAGAAATTGGCTGATTTGGAGGGTGAATGTCCTTTTCTGAAATCTGAAGGGGCTTGCCCTTATGGGTTATCCTGTAGATTTTTAAATACACATCAAGAGGGTAAGCCTTTATCTTCTAACGGATTGAAGGAAAGGTGTGAAGTTAATGGTTTTAGTAAAGATGTTCAGAAGCTTTTATGGAAAAATAAGATGACTTTCCCCAAAACTGATGCCAAACTCAAAACTCTTGGTCTCTTGGTATGTTACTTATTCTTTTTCCCGTTGTTGTTCATGTTATGCCTCTCATTTTCCTCACCGAATTCATAATTGCTATGAAACACAGACTTGTCGATAGTGGTAATAATTTAAGAAAATGAATTATATGAATGTAACTACACATGCCATTGTCGTGTCAGCGTTTCGGGCACCGGACATGCCTTTGATGTAAAGAAGTGTCGGTGCTACATAACATAAACGTTTGCTGCCTACATAGTAGTACACTAGAAAGATGCCAATGCGCTTGTAATTATTCATCAATATGCTACTGGTTTTTCTTTCTTAATTTATTATTACTGTACTGAGATTCAAGTTTAAAACGCCTTTGTCAGTGTTCCTTTATTATCATTGCTCAAATTTCATCAACTGTGTGTGTGTTTTTAATTTTAATATGGTCTTGATGTATATGTCAGTTCCTTTAAGAACTCAGTTTTAATTTCTTCATTCCACATTTGAATCGATCATTATTCAGAATAAGTCAAAAGGGAATGCCGTCAAAAACAAAGATGGTGGTGATAAATGTGTTTCGTCTGATGACAATGGTTCTTGTGCGGTTACATCTGACTTGGAAAACAAAGACGATGGTGACAAACGCCATCAGTCTGATGATGACGGCTCTTGTGGGGTTCCTGCTGACTCAGATTCTAAGTTAGAACGCTCTGTAGATGTTATAAAAGATGATGATGGCATTAAAAGAGAACTTGAACCTGATATACCTTGTCCCCAAAAGAAAAGAAAAACCGCAGAAAATTGTGAAGATGAGGAGACGGAAAATGAAGGTCATAAAATCATCTTTTACTTTAGTGCTTATAGTCTATGGTTAATATTTTTTCAATGTTTAATATTCCTTTGCATTCAATTCTAGTTGAACTTAGCTTCATATTGCTGAAACAGGTGTGAGTGTTGATGACCAAATTGTGGACGGAAGCTGCATAAGATCTGAATCAGAGGCAGGAACTGAAGTTATAACCCCAGAAACTGATCTAAGCTTGAAGTCACACTCACGTGAAAAGAAGCTTATTGATTTCAGGGAGAAGTTGTATCTTGCACCCTTGACCACTGTTGGAAATCTCCCTTTCCGGAGAGTTTGCAAAGTATTAGGAGCTGAAATAACATGCGGTGAAATGGCAATGTGCACAAATCTTTTGGAGGTACATATATGAATTTTCTTCTAGTTCTCTTTATAATCCTGAGTATGATGTATATAGGGATGATCTAATAAACATCAGTATATTTTGATACCAATTTCAGGCAATTCCCACATAGTTTGGTATTTGTCTTTTTTCCCCTAAAATGAATTTATCAAGTGAGATAGTATATCCTCCATAGGTTTGAACGTTGAAACCTTAATATAGGAACCAATAATTTAGTAATAAAATTTTTCAAAACTCTGCTGGGACTGGAACTTGATATTTTTCCTTCTCCCATCCTCTTTGTTTTGTTCTGCACAACTCTAACCTCATCTTTTCTTTTCTTTTGCATTTTCTCAACATTTGAACAATCTATTTGACATTTCAATTGTCATAATTTTGCTTTTGTAATAGGGTCAAGCTTCAGAATGGGCATTGCTGAGACGCCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGGGCACATCCAGATACTGTAGGGCGAGCTGTTGAACTAATAGAAAAGGAATGTACAGTAGATTTCATTGATATAAACATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTTACAAAACCAATGCGCATGAAAAGTGTTGTAGAAGTAGCTTCAGGCACAGTCGATATTCCAGTAACTATAAAGGTATTTTCCATGCTAAATGCAACAATAGGACACAATGAAATTTGTATCGGATTCCATTTAGCATCTTGATAGCTTCCTATGTTCTGGAACTTTGAACTTTCTTCACGCTAGACCAAGTCCTTTTACGTTTTCCAGGACAAAAAAAATCTTGTTATGCTTTTGAATTTCCGCAATATGTTTGCTTAAGATATGTATGACCCATTCATCTATTGCACTAGGTACGGACAGCGTATTTTGAAGGGAGGAATCGTATCGACTCTCTGATAGCAAACTTTAGCTCTTGGGGAGCTAGTGCAGTGACAATACATGGCAGGTCACGGCAACAACGCTATAGCAAGCCTGCTGACTGGGATTACGTATATCAGTGTACCAGGAAAGCCCCTAATAATTTGCAAGTAGTGGGGAATGGAGATGTTTTTTCATTTGTAGACTGGAACAACCACAAAACTGAATGCCCTGAACTTGCCACATGCTTGATTGCCCGTGGTGCACTTATTAAAGTTAGTATTATTGCCTTGTCTCGATCTCATTTTATGGAGTTTGTTGTTGAGTATTATATCTAATGCTAGTTGTCTTCATCAGGAGCAATATTGTTGCATGGTGTAGATATTTATTTATTTTTGAATCGTCTAAACTTATGACTGCTGTGTGCAGCCCTGGATATTTACAGAGATAAAGGAACAGCGACATTGGGACATCAGTTCTGGTGAGCGATTAAATATTTTCAAAGATTTTGTGCATTTTGGTCTTCAACATTGGGGTTCAGATACAAAAGGTATATTTTATTGGTGCTGATGGAGTAGCTTTATTATATTCATAATTTAATAGTTTAACTCTTGCTGTCGTTAAATTATTAGAAAAAATAGCTACAGTAGTTACCTCAAAACAAACACTAAACAGTTGTTAATTGTACCTGTCTTATGCCAAGAATGAACGGTCCTTATGTAGATGCAACAAATTTGGTTCATATCTTTTTCTCTTTTTCCAAAGAATATGAAACATTGATGAGTGTATAAGGGGTCTCTTGGACTAAGAGCATATAATTTGTGGGAGTATCTTGTAAGAGGGCTGAGTTTGCTCACATGAAAATATACCTTCAATCTTTTACATGTAGTCTATAACCATTTGCTAGAAAAAAACAACATGAAACAACTTCTTTTCTATCTTGTTTTTTTACTGTTGTGTAATTCATATATTATATGCTGTGTTTTAGGGGTGGAGACTACCAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTGTAGGTACATACCTGTTGGTCTTTTGGATGTGGTTCCACAACGAATAAATTGGCGTCCACCATCTTACTATGGGCGGGATGACCTTGAGACACTGATGGCCTCCGACTCTGCAGCTGACTGGGTATGCAATTCCCTTTTGTTTCCAGTTTTCTTGAGCATATTTAAACGGTGTGTTTTGGAGCTTCTCTTTCAAGTAAATATTATATGATCTATTAATTTTTTTAAAATGGAAGAAATAAAATGATAGATTTATCATGAAAGTTATTGTCCTGACACTTATTCATTATATTTATTTTATAAACCTTGTATAAAATTAAGATTTTACCCTCTCTTATCGAAATAAAGATTTTTCACTTTTCATTTAAAAAATGAAGATTTTACCCTTTCTTCTCTATTCATGCAAAACCCTCTATCCGAAGACAGCAGAAAATAGTTTTGTTTAACAGGATGTAGTTGGTAGGAAATGTGAATGATGAAGAGACTATTAACACTTCATAATTACTTATATACATTTTCATTATAATCTAATATTATAATATCCTGGTCCCATACTGTTAAACGATTCTTTTTATTATACACAGGTGCGATTATCAGAGATGTTACTTGGCAAAGTTCCAGATGGCTTTACTTTTGCACCAAAGCATAAATCAAATGCTTACGATAGAGCTGAAAATGGTTAA

Protein sequence

>MS.gene063116.t1

MEGGEDDSGKGSTLVIHQTIEQLIARCIAPVKKDFIRPPPDRTTSTTSSAPNDKPPVLAKEKKSKRQLKRERLQDKKSTKNLCPNIAKSGDVNSCPYQENCRFSHDIQAFKEQKLADLEGECPFLKSEGACPYGLSCRFLNTHQEGKPLSSNGLKERCEVNGFSKDVQKLLWKNKMTFPKTDAKLKTLGLLNKSKGNAVKNKDGGDKCVSSDDNGSCAVTSDLENKDDGDKRHQSDDDGSCGVPADSDSKLERSVDVIKDDDGIKRELEPDIPCPQKKRKTAENCEDEETENEGVSVDDQIVDGSCIRSESEAGTEVITPETDLSLKSHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGAEITCGEMAMCTNLLEGQASEWALLRRHSSEDLFGVQICGAHPDTVGRAVELIEKECTVDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSVVEVASGTVDIPVTIKVRTAYFEGRNRIDSLIANFSSWGASAVTIHGRSRQQRYSKPADWDYVYQCTRKAPNNLQVVGNGDVFSFVDWNNHKTECPELATCLIARGALIKPWIFTEIKEQRHWDISSGERLNIFKDFVHFGLQHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLDVVPQRINWRPPSYYGRDDLETLMASDSAADWVRLSEMLLGKVPDGFTFAPKHKSNAYDRAENG