Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063168.t1 | XP_003603905.1 | 91.5 | 106 | 9 | 0 | 1 | 106 | 1 | 106 | 1.10E-45 | 194.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063168.t1 | P17771 | 65.1 | 63 | 22 | 0 | 1 | 63 | 4 | 66 | 3.4e-11 | 70.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063168.t1 | G7J6J7 | 91.5 | 106 | 9 | 0 | 1 | 106 | 1 | 106 | 8.0e-46 | 194.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050338 | MS.gene063168 | 0.806136 | 9.52E-50 | -1.69E-46 |
| MS.gene052702 | MS.gene063168 | 0.801237 | 9.90E-49 | -1.69E-46 |
| MS.gene056694 | MS.gene063168 | 0.843484 | 1.36E-58 | -1.69E-46 |
| MS.gene056697 | MS.gene063168 | 0.828051 | 1.11E-54 | -1.69E-46 |
| MS.gene058334 | MS.gene063168 | 0.806575 | 7.70E-50 | -1.69E-46 |
| MS.gene058382 | MS.gene063168 | 0.850541 | 1.59E-60 | -1.69E-46 |
| MS.gene05926 | MS.gene063168 | 0.816546 | 5.23E-52 | -1.69E-46 |
| MS.gene061044 | MS.gene063168 | 0.839724 | 1.34E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063168.t1 | MTR_3g116440 | 85.714 | 350 | 41 | 3 | 16 | 362 | 16 | 359 | 0.0 | 555 |
| MS.gene063168.t1 | MTR_3g034610 | 64.773 | 352 | 101 | 3 | 33 | 361 | 1 | 352 | 1.11e-143 | 413 |
| MS.gene063168.t1 | MTR_3g034610 | 69.611 | 283 | 80 | 2 | 85 | 361 | 122 | 404 | 1.96e-130 | 379 |
| MS.gene063168.t1 | MTR_3g034640 | 53.102 | 403 | 125 | 5 | 16 | 360 | 16 | 412 | 1.13e-123 | 365 |
| MS.gene063168.t1 | MTR_3g034640 | 62.366 | 279 | 99 | 2 | 88 | 360 | 186 | 464 | 2.10e-110 | 331 |
| MS.gene063168.t1 | MTR_3g034640 | 56.698 | 321 | 126 | 5 | 46 | 360 | 177 | 490 | 1.00e-108 | 327 |
| MS.gene063168.t1 | MTR_3g034640 | 60.606 | 264 | 102 | 1 | 79 | 340 | 229 | 492 | 4.93e-101 | 307 |
| MS.gene063168.t1 | MTR_3g034640 | 54.639 | 97 | 40 | 1 | 269 | 361 | 57 | 153 | 2.10e-20 | 92.8 |
| MS.gene063168.t1 | MTR_3g116430 | 57.702 | 383 | 135 | 6 | 1 | 360 | 1 | 379 | 3.89e-123 | 362 |
| MS.gene063168.t1 | MTR_3g116430 | 58.077 | 260 | 106 | 2 | 79 | 337 | 173 | 430 | 4.70e-89 | 275 |
| MS.gene063168.t1 | MTR_3g107810 | 49.714 | 350 | 154 | 4 | 17 | 360 | 17 | 350 | 3.59e-99 | 302 |
| MS.gene063168.t1 | MTR_3g107810 | 49.643 | 280 | 139 | 2 | 85 | 362 | 199 | 478 | 8.92e-80 | 252 |
| MS.gene063168.t1 | MTR_3g107810 | 49.296 | 284 | 138 | 2 | 85 | 362 | 147 | 430 | 6.84e-79 | 250 |
| MS.gene063168.t1 | MTR_4g069810 | 36.695 | 357 | 194 | 15 | 18 | 362 | 19 | 355 | 1.12e-49 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGGTTCAAAATCTTTAT+TGG | 0.220637 | 3.2:-91960975 | None:intergenic |
| TCTTGGTTCAAAATCTTTAT+TGG | 0.225126 | 3.2:-91961053 | None:intergenic |
| TCTTGGTTCAAAATCTTTAT+TGG | 0.225126 | 3.2:-91961131 | None:intergenic |
| AGACCTAACATTTCAGCTTA+TGG | 0.239620 | 3.2:+91961307 | MS.gene063168:CDS |
| AGACCCAATGTTTCAGCTTA+TGG | 0.248284 | 3.2:+91960761 | MS.gene063168:CDS |
| AGACCCAATGTTTCAGCTTA+TGG | 0.248284 | 3.2:+91960917 | MS.gene063168:CDS |
| AGACCCAATGTTTCAGCTTA+TGG | 0.248284 | 3.2:+91961073 | MS.gene063168:CDS |
| AGACCTAATGTTTCAGCTTA+TGG | 0.249885 | 3.2:+91960683 | MS.gene063168:CDS |
| TGTAGAATCAAGAAAAGATT+TGG | 0.250935 | 3.2:+91960367 | MS.gene063168:CDS |
| GACCTAACATTTCAGCTTAT+GGG | 0.310475 | 3.2:+91961308 | MS.gene063168:CDS |
| AGGTCTTGGTTCAAAATCTT+TGG | 0.310679 | 3.2:-91961290 | None:intergenic |
| CATTTATGCATCATATTTAG+TGG | 0.320826 | 3.2:-91961383 | None:intergenic |
| GTTCCATAAGCTGAAACATT+AGG | 0.327800 | 3.2:-91960686 | None:intergenic |
| AAACAATTACATTGATGTTA+TGG | 0.330758 | 3.2:+91961252 | MS.gene063168:CDS |
| ATATTTAGTGGCACTTGGTC+GGG | 0.347002 | 3.2:-91961371 | None:intergenic |
| AGACAATCGTGTTGAAGTTA+AGG | 0.379767 | 3.2:+91960862 | MS.gene063168:CDS |
| AGACAATGGTATTGATGTTA+AGG | 0.392683 | 3.2:+91960940 | MS.gene063168:CDS |
| AGACAATGGTATTGATGTTA+AGG | 0.392683 | 3.2:+91961096 | MS.gene063168:CDS |
| ATTGATGTTAAGGAAAATAA+AGG | 0.395870 | 3.2:+91960950 | MS.gene063168:CDS |
| ATTGATGTTAAGGAAAATAA+AGG | 0.395870 | 3.2:+91961106 | MS.gene063168:CDS |
| AGACCCAATGTTTCAGCATA+TGG | 0.405735 | 3.2:+91961151 | MS.gene063168:CDS |
| ATGAATGATGTCATTGTCTA+TGG | 0.405969 | 3.2:-91960549 | None:intergenic |
| ATTGATGTTACAGAAAATAA+AGG | 0.415243 | 3.2:+91961028 | MS.gene063168:CDS |
| ACACCCAATGTTTCAGCATA+TGG | 0.418154 | 3.2:+91960839 | MS.gene063168:CDS |
| TCTCCATATGCTGAAATGTT+TGG | 0.423109 | 3.2:-91960998 | None:intergenic |
| GTAGAATCAAGAAAAGATTT+GGG | 0.427549 | 3.2:+91960368 | MS.gene063168:CDS |
| TATGCTGAAACATTGGGTCT+TGG | 0.433141 | 3.2:-91961226 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.435355 | 3.2:-91960914 | None:intergenic |
| TATGCTGAAATGTTTGGTCT+TGG | 0.439257 | 3.2:-91960992 | None:intergenic |
| GACAATCGTGTTGAAGTTAA+GGG | 0.442091 | 3.2:+91960863 | MS.gene063168:CDS |
| AGACCAAACATTTCAGCATA+TGG | 0.445583 | 3.2:+91960995 | MS.gene063168:CDS |
| CATATTTAGTGGCACTTGGT+CGG | 0.446372 | 3.2:-91961372 | None:intergenic |
| GTCTCCATATGCTGAAACAT+TGG | 0.449066 | 3.2:-91961155 | None:intergenic |
| TAAGCTGAAATGTTAGGTCT+TGG | 0.458122 | 3.2:-91961304 | None:intergenic |
| TAAGCTGAAACATTAGGTCT+TGG | 0.463292 | 3.2:-91960680 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.464372 | 3.2:-91960758 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.464372 | 3.2:-91961070 | None:intergenic |
| TATGAAGATAATAACATTGA+GGG | 0.464536 | 3.2:+91960629 | MS.gene063168:CDS |
| AAACCTTTGAAAGACTGCTT+CGG | 0.465281 | 3.2:-91960482 | None:intergenic |
| ATTCATGCTAAGAGAAAGAA+AGG | 0.472696 | 3.2:+91960566 | MS.gene063168:CDS |
| TATGCTGAAACATTGGGTCT+TGG | 0.475638 | 3.2:-91961148 | None:intergenic |
| TCTCCATATGCTGAAACATT+GGG | 0.476305 | 3.2:-91961154 | None:intergenic |
| AACAAATGAAATTGATGCTA+AGG | 0.478202 | 3.2:+91960706 | MS.gene063168:CDS |
| GTCTCCATAAGCTGAAACAT+TGG | 0.487144 | 3.2:-91960765 | None:intergenic |
| GTCTCCATAAGCTGAAACAT+TGG | 0.487144 | 3.2:-91960921 | None:intergenic |
| GTCTCCATAAGCTGAAACAT+TGG | 0.487144 | 3.2:-91961077 | None:intergenic |
| TCCCCATAAGCTGAAATGTT+AGG | 0.487972 | 3.2:-91961310 | None:intergenic |
| TATTTAGTGGCACTTGGTCG+GGG | 0.498218 | 3.2:-91961370 | None:intergenic |
| TCTCCATAAGCTGAAACATT+GGG | 0.499953 | 3.2:-91960764 | None:intergenic |
| TCTCCATAAGCTGAAACATT+GGG | 0.499953 | 3.2:-91960920 | None:intergenic |
| TCTCCATAAGCTGAAACATT+GGG | 0.499953 | 3.2:-91961076 | None:intergenic |
| GTCTCCATATGCTGAAACAT+TGG | 0.510420 | 3.2:-91960843 | None:intergenic |
| GCATCATATTTAGTGGCACT+TGG | 0.527772 | 3.2:-91961376 | None:intergenic |
| AATTGATGCTAAGGAAAAGA+AGG | 0.533314 | 3.2:+91960715 | MS.gene063168:CDS |
| AGGGGCAACAAAGCAAGAGC+AGG | 0.535358 | 3.2:-91958036 | None:intergenic |
| ACTCCGAAGCAGTCTTTCAA+AGG | 0.542773 | 3.2:+91960479 | MS.gene063168:CDS |
| TCTCCATATGCTGAAACATT+GGG | 0.551421 | 3.2:-91960842 | None:intergenic |
| ACCTAACATTTCAGCTTATG+GGG | 0.562671 | 3.2:+91961309 | MS.gene063168:CDS |
| GACATGCGAAAAGAAATTCA+AGG | 0.567894 | 3.2:+91960422 | MS.gene063168:CDS |
| GTTTCAGCTTATGGAGACAA+TGG | 0.577650 | 3.2:+91960926 | MS.gene063168:CDS |
| GTTTCAGCTTATGGAGACAA+TGG | 0.577650 | 3.2:+91961082 | MS.gene063168:CDS |
| ATATGAAGATAATAACATTG+AGG | 0.587671 | 3.2:+91960628 | MS.gene063168:CDS |
| TATGCTGAAACATTGGGTGT+TGG | 0.621863 | 3.2:-91960836 | None:intergenic |
| ACATGCGAAAAGAAATTCAA+GGG | 0.625015 | 3.2:+91960423 | MS.gene063168:CDS |
| TATTGATGTTGAATTCACAA+AGG | 0.628277 | 3.2:+91961339 | MS.gene063168:CDS |
| ACTTGTGTGTCTATTACAAG+TGG | 0.633990 | 3.2:-91960524 | None:intergenic |
| ACATACCAAGAAAAGCAAGA+GGG | 0.652569 | 3.2:-91958055 | None:intergenic |
| CATACCAAGAAAAGCAAGAG+GGG | 0.655694 | 3.2:-91958054 | None:intergenic |
| AACATACCAAGAAAAGCAAG+AGG | 0.668669 | 3.2:-91958056 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAATAATTATATTTA+AGG | - | chr3.2:91959367-91959386 | None:intergenic | 0.0% |
| !! | AATATATACCTATATATAAA+GGG | - | chr3.2:91958981-91959000 | None:intergenic | 10.0% |
| !! | AATGTAAAATCTTATTATAA+TGG | - | chr3.2:91959035-91959054 | None:intergenic | 10.0% |
| !! | AATTAAATGTAAAATATAAG+AGG | - | chr3.2:91958132-91958151 | None:intergenic | 10.0% |
| !!! | AAAAATGATTTTTTTTTTGA+TGG | + | chr3.2:91959209-91959228 | MS.gene063168:intron | 10.0% |
| !!! | AAGATTTAAAAATGATTTTA+TGG | - | chr3.2:91958231-91958250 | None:intergenic | 10.0% |
| !!! | TCAAAAAAAAAATCATTTTT+TGG | - | chr3.2:91959209-91959228 | None:intergenic | 10.0% |
| !!! | TTTTATTTTTATTTTGCTAT+TGG | - | chr3.2:91959494-91959513 | None:intergenic | 10.0% |
| !! | AAATAAAATCTTCATCTAAT+TGG | - | chr3.2:91958571-91958590 | None:intergenic | 15.0% |
| !! | AATAAAATCTTCATCTAATT+GGG | - | chr3.2:91958570-91958589 | None:intergenic | 15.0% |
| !! | ATATATACCTATATATAAAG+GGG | - | chr3.2:91958980-91958999 | None:intergenic | 15.0% |
| !! | CAATATATACCTATATATAA+AGG | - | chr3.2:91958982-91959001 | None:intergenic | 15.0% |
| !! | CTTAAAAAAATATCTCAATT+AGG | + | chr3.2:91959755-91959774 | MS.gene063168:intron | 15.0% |
| !!! | AAACTTTTAATTAAGAAAGT+TGG | - | chr3.2:91958865-91958884 | None:intergenic | 15.0% |
| !!! | ATTTTTTGGTAAATCAAAAA+CGG | - | chr3.2:91959195-91959214 | None:intergenic | 15.0% |
| !!! | CTAATTGAGATATTTTTTTA+AGG | - | chr3.2:91959757-91959776 | None:intergenic | 15.0% |
| !! | AAACAATTACATTGATGTTA+TGG | + | chr3.2:91961252-91961271 | MS.gene063168:CDS | 20.0% |
| !! | AAATTATTTCCTAACCAAAA+AGG | - | chr3.2:91960228-91960247 | None:intergenic | 20.0% |
| !! | ATAAATTGGATCCTAAAATT+TGG | - | chr3.2:91959938-91959957 | None:intergenic | 20.0% |
| !! | ATAATCACTAACATCAAAAT+GGG | + | chr3.2:91958273-91958292 | MS.gene063168:intron | 20.0% |
| !! | ATATGAAGATAATAACATTG+AGG | + | chr3.2:91960628-91960647 | MS.gene063168:CDS | 20.0% |
| !! | ATTGATGTTAAGGAAAATAA+AGG | + | chr3.2:91960950-91960969 | MS.gene063168:CDS | 20.0% |
| !! | ATTGATGTTACAGAAAATAA+AGG | + | chr3.2:91961028-91961047 | MS.gene063168:CDS | 20.0% |
| !! | TAAGACATAAGAAAAAGTAA+TGG | - | chr3.2:91960312-91960331 | None:intergenic | 20.0% |
| !! | TAATAAGAATAGTTAACGAA+GGG | + | chr3.2:91958915-91958934 | MS.gene063168:intron | 20.0% |
| !! | TACTTCAAGAATATTAGATA+TGG | - | chr3.2:91959807-91959826 | None:intergenic | 20.0% |
| !! | TATAATCACTAACATCAAAA+TGG | + | chr3.2:91958272-91958291 | MS.gene063168:intron | 20.0% |
| !! | TATCTTCTAATTATACCATT+CGG | - | chr3.2:91958709-91958728 | None:intergenic | 20.0% |
| !! | TATGAAGATAATAACATTGA+GGG | + | chr3.2:91960629-91960648 | MS.gene063168:CDS | 20.0% |
| !! | TATTAGGATACAAGTTAATA+TGG | + | chr3.2:91959955-91959974 | MS.gene063168:intron | 20.0% |
| !! | TTATATTGTTCATATTGAAG+TGG | + | chr3.2:91958589-91958608 | MS.gene063168:intron | 20.0% |
| !!! | ATCTTCATATTTTGAAACAT+TGG | - | chr3.2:91960618-91960637 | None:intergenic | 20.0% |
| !!! | ATTTTAGGATCCAATTTATT+AGG | + | chr3.2:91959939-91959958 | MS.gene063168:intron | 20.0% |
| !!! | GTTGAATCTTTATTTAATTG+TGG | - | chr3.2:91958789-91958808 | None:intergenic | 20.0% |
| !!! | TAACTTGTATCCTAATAAAT+TGG | - | chr3.2:91959952-91959971 | None:intergenic | 20.0% |
| !!! | TCTTCATATTTTGAAACATT+GGG | - | chr3.2:91960617-91960636 | None:intergenic | 20.0% |
| !!! | TTGAACAATTATTTTCTTGT+TGG | + | chr3.2:91958150-91958169 | MS.gene063168:intron | 20.0% |
| ! | AACAAATGAAATTGATGCTA+AGG | + | chr3.2:91960706-91960725 | MS.gene063168:CDS | 25.0% |
| ! | AGGAAAAAACACTCATAATT+AGG | - | chr3.2:91960208-91960227 | None:intergenic | 25.0% |
| ! | ATCGATTAACTTTCAGTATT+CGG | - | chr3.2:91958196-91958215 | None:intergenic | 25.0% |
| ! | ATTAGAATAGTTTAACCGAA+TGG | + | chr3.2:91958691-91958710 | MS.gene063168:intron | 25.0% |
| ! | CATATATCCCCTTTATATAT+AGG | + | chr3.2:91958970-91958989 | MS.gene063168:intron | 25.0% |
| ! | GGAAAAAACACTCATAATTA+GGG | - | chr3.2:91960207-91960226 | None:intergenic | 25.0% |
| ! | GTAATAAGAATAGTTAACGA+AGG | + | chr3.2:91958914-91958933 | MS.gene063168:intron | 25.0% |
| ! | GTAGAATCAAGAAAAGATTT+GGG | + | chr3.2:91960368-91960387 | MS.gene063168:CDS | 25.0% |
| ! | TATTGATGCTAAGAAAAAGA+AGG | + | chr3.2:91960793-91960812 | MS.gene063168:CDS | 25.0% |
| ! | TATTGATGTTGAATTCACAA+AGG | + | chr3.2:91961339-91961358 | MS.gene063168:CDS | 25.0% |
| ! | TCTTGGTTCAAAATCTTTAT+TGG | - | chr3.2:91960978-91960997 | None:intergenic | 25.0% |
| ! | TGTAGAATCAAGAAAAGATT+TGG | + | chr3.2:91960367-91960386 | MS.gene063168:CDS | 25.0% |
| ! | TTAGGTAGATTAATCTTAAG+TGG | - | chr3.2:91959658-91959677 | None:intergenic | 25.0% |
| !! | TAAAGGGGATATATGATTTT+AGG | - | chr3.2:91958965-91958984 | None:intergenic | 25.0% |
| !! | TCAACGATTTTCCAAATTTT+AGG | + | chr3.2:91959924-91959943 | MS.gene063168:intron | 25.0% |
| !! | TGTGATCAAACCAAAATTTT+TGG | - | chr3.2:91958333-91958352 | None:intergenic | 25.0% |
| !! | TTTTCATATGCTGAAACATT+GGG | - | chr3.2:91961235-91961254 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTTTGATGGTGTC+TGG | + | chr3.2:91959216-91959235 | MS.gene063168:intron | 25.0% |
| !!! | TATGAGTGTTTTTTCCTTTT+TGG | + | chr3.2:91960211-91960230 | MS.gene063168:intron | 25.0% |
| !!! | TTTTTATTTTGCTATTGGTC+AGG | - | chr3.2:91959489-91959508 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGATGGTGTCT+GGG | + | chr3.2:91959217-91959236 | MS.gene063168:intron | 25.0% |
| AAAACATTCAAGTGAGTGTT+GGG | + | chr3.2:91959461-91959480 | MS.gene063168:intron | 30.0% | |
| AATTGATGCTAAGGAAAAGA+AGG | + | chr3.2:91960715-91960734 | MS.gene063168:CDS | 30.0% | |
| ACATGCGAAAAGAAATTCAA+GGG | + | chr3.2:91960423-91960442 | MS.gene063168:CDS | 30.0% | |
| ATGAATGATGTCATTGTCTA+TGG | - | chr3.2:91960552-91960571 | None:intergenic | 30.0% | |
| ATTCATGCTAAGAGAAAGAA+AGG | + | chr3.2:91960566-91960585 | MS.gene063168:CDS | 30.0% | |
| ATTGTCGAGAAAATCTTGTA+TGG | + | chr3.2:91958300-91958319 | MS.gene063168:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr3.2:91959306-91959325 | None:intergenic | 30.0% | |
| GAGAAAATAGGACATTCTTA+AGG | + | chr3.2:91959886-91959905 | MS.gene063168:intron | 30.0% | |
| GTCTATATGTACAGTAAAGT+TGG | - | chr3.2:91960290-91960309 | None:intergenic | 30.0% | |
| TAACCAATAACATGTTTACC+CGG | + | chr3.2:91960131-91960150 | MS.gene063168:intron | 30.0% | |
| TAGGATACAAGTTAATATGG+TGG | + | chr3.2:91959958-91959977 | MS.gene063168:intron | 30.0% | |
| TTTCACCAGTTTGAGAAAAT+AGG | + | chr3.2:91959874-91959893 | MS.gene063168:intron | 30.0% | |
| ! | AAAAAGTATACGACTCACAT+TGG | + | chr3.2:91959405-91959424 | MS.gene063168:intron | 30.0% |
| ! | AATGTCCTATTTTCTCAAAC+TGG | - | chr3.2:91959882-91959901 | None:intergenic | 30.0% |
| ! | GTTTTCATATGCTGAAACAT+TGG | - | chr3.2:91961236-91961255 | None:intergenic | 30.0% |
| ! | TTGAACTTCATAAGAAGTGT+TGG | - | chr3.2:91960023-91960042 | None:intergenic | 30.0% |
| !! | AGACAATGGTATTGATGTTA+AGG | + | chr3.2:91960940-91960959 | MS.gene063168:CDS | 30.0% |
| !! | TGAACTTCATAAGAAGTGTT+GGG | - | chr3.2:91960022-91960041 | None:intergenic | 30.0% |
| !! | TTTTAAGGATTCGTTATCTC+AGG | - | chr3.2:91959742-91959761 | None:intergenic | 30.0% |
| !!! | GTGTTTTTTCCTTTTTGGTT+AGG | + | chr3.2:91960216-91960235 | MS.gene063168:intron | 30.0% |
| !!! | TATTTTGAAACATTGGGTCT+TGG | - | chr3.2:91960611-91960630 | None:intergenic | 30.0% |
| AACATACCAAGAAAAGCAAG+AGG | - | chr3.2:91958059-91958078 | None:intergenic | 35.0% | |
| AATAACGAGAAACACTTGTG+TGG | - | chr3.2:91958474-91958493 | None:intergenic | 35.0% | |
| AATGGACCTAATAATGGTCA+AGG | - | chr3.2:91959160-91959179 | None:intergenic | 35.0% | |
| ACATACCAAGAAAAGCAAGA+GGG | - | chr3.2:91958058-91958077 | None:intergenic | 35.0% | |
| ACCTAACATTTCAGCTTATG+GGG | + | chr3.2:91961309-91961328 | MS.gene063168:CDS | 35.0% | |
| ACTTGTGTGTCTATTACAAG+TGG | - | chr3.2:91960527-91960546 | None:intergenic | 35.0% | |
| AGACAATCGTGTTGAAGTTA+AGG | + | chr3.2:91960862-91960881 | MS.gene063168:CDS | 35.0% | |
| AGACCAAACATTTCAGCATA+TGG | + | chr3.2:91960995-91961014 | MS.gene063168:CDS | 35.0% | |
| AGACCTAACATTTCAGCTTA+TGG | + | chr3.2:91961307-91961326 | MS.gene063168:CDS | 35.0% | |
| AGACCTAATGTTTCAGCTTA+TGG | + | chr3.2:91960683-91960702 | MS.gene063168:CDS | 35.0% | |
| AGGTCTTGGTTCAAAATCTT+TGG | - | chr3.2:91961293-91961312 | None:intergenic | 35.0% | |
| ATGGACCTAATAATGGTCAA+GGG | - | chr3.2:91959159-91959178 | None:intergenic | 35.0% | |
| CAAAACATTCAAGTGAGTGT+TGG | + | chr3.2:91959460-91959479 | MS.gene063168:intron | 35.0% | |
| CTTCACACAGATGTATAGAT+AGG | + | chr3.2:91958755-91958774 | MS.gene063168:intron | 35.0% | |
| GAAAGAGAAGAGAGAGAAAA+TGG | - | chr3.2:91958397-91958416 | None:intergenic | 35.0% | |
| GACAATCGTGTTGAAGTTAA+GGG | + | chr3.2:91960863-91960882 | MS.gene063168:CDS | 35.0% | |
| GACATGCGAAAAGAAATTCA+AGG | + | chr3.2:91960422-91960441 | MS.gene063168:CDS | 35.0% | |
| GACCTAACATTTCAGCTTAT+GGG | + | chr3.2:91961308-91961327 | MS.gene063168:CDS | 35.0% | |
| GGTAGATTAATCTTAAGTGG+AGG | - | chr3.2:91959655-91959674 | None:intergenic | 35.0% | |
| GTTCCATAAGCTGAAACATT+AGG | - | chr3.2:91960689-91960708 | None:intergenic | 35.0% | |
| TAAGCTGAAACATTAGGTCT+TGG | - | chr3.2:91960683-91960702 | None:intergenic | 35.0% | |
| TAAGCTGAAATGTTAGGTCT+TGG | - | chr3.2:91961307-91961326 | None:intergenic | 35.0% | |
| TATGCTGAAATGTTTGGTCT+TGG | - | chr3.2:91960995-91961014 | None:intergenic | 35.0% | |
| TCTCCATAAGCTGAAACATT+GGG | - | chr3.2:91960767-91960786 | None:intergenic | 35.0% | |
| TCTCCATATGCTGAAACATT+GGG | - | chr3.2:91960845-91960864 | None:intergenic | 35.0% | |
| TCTCCATATGCTGAAATGTT+TGG | - | chr3.2:91961001-91961020 | None:intergenic | 35.0% | |
| TGTGACCAAACCAAAATTCT+TGG | + | chr3.2:91958441-91958460 | MS.gene063168:intron | 35.0% | |
| TTGTGCAATACGAAAGCAAA+AGG | - | chr3.2:91958502-91958521 | None:intergenic | 35.0% | |
| ! | AAACATTCAAGTGAGTGTTG+GGG | + | chr3.2:91959462-91959481 | MS.gene063168:intron | 35.0% |
| ! | AAACCTTTGAAAGACTGCTT+CGG | - | chr3.2:91960485-91960504 | None:intergenic | 35.0% |
| ! | TGTGAAGAGTTGCATGATTT+TGG | - | chr3.2:91958742-91958761 | None:intergenic | 35.0% |
| !! | CTTGAGATTCTTTTTCGTCT+CGG | - | chr3.2:91960459-91960478 | None:intergenic | 35.0% |
| !! | GAACTTCATAAGAAGTGTTG+GGG | - | chr3.2:91960021-91960040 | None:intergenic | 35.0% |
| !! | TCGTTATCTCAGGTTGTTTT+AGG | - | chr3.2:91959732-91959751 | None:intergenic | 35.0% |
| !!! | ACCTTTTTTTTGAGGGATCA+AGG | - | chr3.2:91959136-91959155 | None:intergenic | 35.0% |
| !!! | CAAACCAAAATTTTTGGTCC+TGG | - | chr3.2:91958327-91958346 | None:intergenic | 35.0% |
| !!! | CCTTTTTTTTGAGGGATCAA+GGG | - | chr3.2:91959135-91959154 | None:intergenic | 35.0% |
| !!! | GGAGGAGATATTATTTTGAG+TGG | - | chr3.2:91959637-91959656 | None:intergenic | 35.0% |
| !!! | TCAAGGGACCTTTTTTTTGA+GGG | - | chr3.2:91959143-91959162 | None:intergenic | 35.0% |
| AAGGTCCCTTGACCATTATT+AGG | + | chr3.2:91959151-91959170 | MS.gene063168:intron | 40.0% | |
| ACACCCAATGTTTCAGCATA+TGG | + | chr3.2:91960839-91960858 | MS.gene063168:CDS | 40.0% | |
| AGACCCAATGTTTCAGCATA+TGG | + | chr3.2:91961151-91961170 | MS.gene063168:CDS | 40.0% | |
| AGACCCAATGTTTCAGCTTA+TGG | + | chr3.2:91960761-91960780 | MS.gene063168:CDS | 40.0% | |
| AGCGAACAATCATCTAGTGA+AGG | - | chr3.2:91960174-91960193 | None:intergenic | 40.0% | |
| ATATTTAGTGGCACTTGGTC+GGG | - | chr3.2:91961374-91961393 | None:intergenic | 40.0% | |
| CAAACCAAAATTCTTGGTCC+TGG | + | chr3.2:91958447-91958466 | MS.gene063168:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+CGG | - | chr3.2:91959299-91959318 | None:intergenic | 40.0% | |
| CATACCAAGAAAAGCAAGAG+GGG | - | chr3.2:91958057-91958076 | None:intergenic | 40.0% | |
| CATATTTAGTGGCACTTGGT+CGG | - | chr3.2:91961375-91961394 | None:intergenic | 40.0% | |
| CCATTATTAGGTCCATTGCA+CGG | + | chr3.2:91959163-91959182 | MS.gene063168:intron | 40.0% | |
| CCCTTGATCCCTCAAAAAAA+AGG | + | chr3.2:91959132-91959151 | MS.gene063168:intron | 40.0% | |
| GAGAAAATCTTGTATGGACC+AGG | + | chr3.2:91958306-91958325 | MS.gene063168:intron | 40.0% | |
| GCATCATATTTAGTGGCACT+TGG | - | chr3.2:91961379-91961398 | None:intergenic | 40.0% | |
| GTCTCCATAAGCTGAAACAT+TGG | - | chr3.2:91960768-91960787 | None:intergenic | 40.0% | |
| GTCTCCATATGCTGAAACAT+TGG | - | chr3.2:91960846-91960865 | None:intergenic | 40.0% | |
| GTTGGGGTTGAGATAAAATG+TGG | - | chr3.2:91960005-91960024 | None:intergenic | 40.0% | |
| GTTTCAGCTTATGGAGACAA+TGG | + | chr3.2:91960770-91960789 | MS.gene063168:CDS | 40.0% | |
| TAAGCTGAAACATTGGGTCT+TGG | - | chr3.2:91960761-91960780 | None:intergenic | 40.0% | |
| TATGCTGAAACATTGGGTCT+TGG | - | chr3.2:91961151-91961170 | None:intergenic | 40.0% | |
| TATGCTGAAACATTGGGTGT+TGG | - | chr3.2:91960839-91960858 | None:intergenic | 40.0% | |
| TCCCCATAAGCTGAAATGTT+AGG | - | chr3.2:91961313-91961332 | None:intergenic | 40.0% | |
| TGAAGGTTTCCCTTGTATTC+TGG | - | chr3.2:91960157-91960176 | None:intergenic | 40.0% | |
| TGACTCTCAGAGAGAACTTT+AGG | - | chr3.2:91959676-91959695 | None:intergenic | 40.0% | |
| ! | TGGACCAGGACCAAAAATTT+TGG | + | chr3.2:91958320-91958339 | MS.gene063168:intron | 40.0% |
| !!! | CAGGACCAAGAATTTTGGTT+TGG | - | chr3.2:91958449-91958468 | None:intergenic | 40.0% |
| !!! | GTCAAGGGACCTTTTTTTTG+AGG | - | chr3.2:91959144-91959163 | None:intergenic | 40.0% |
| ACTCCGAAGCAGTCTTTCAA+AGG | + | chr3.2:91960479-91960498 | MS.gene063168:CDS | 45.0% | |
| CCGTGCAATGGACCTAATAA+TGG | - | chr3.2:91959166-91959185 | None:intergenic | 45.0% | |
| GAGAGAAGAGAAGAGAGAGA+AGG | - | chr3.2:91958370-91958389 | None:intergenic | 45.0% | |
| TATTTAGTGGCACTTGGTCG+GGG | - | chr3.2:91961373-91961392 | None:intergenic | 45.0% | |
| TGGCCGGGTAAACATGTTAT+TGG | - | chr3.2:91960137-91960156 | None:intergenic | 45.0% | |
| TTATTAGGTCCATTGCACGG+AGG | + | chr3.2:91959166-91959185 | MS.gene063168:intron | 45.0% | |
| TTTACCCGGCCAGAATACAA+GGG | + | chr3.2:91960145-91960164 | MS.gene063168:intron | 45.0% | |
| ! | TGGACCAGGACCAAGAATTT+TGG | - | chr3.2:91958454-91958473 | None:intergenic | 45.0% |
| !! | AACAAAAATAATAAATATTT+AGG | + | chr3.2:91959108-91959127 | MS.gene063168:intron | 5.0% |
| !!! | TGTTATTTTTTATTTTTTTA+AGG | - | chr3.2:91960058-91960077 | None:intergenic | 5.0% |
| AAACGGTATCCTCCGTGCAA+TGG | - | chr3.2:91959178-91959197 | None:intergenic | 50.0% | |
| CCCTTCGAGACAATCTTCGT+CGG | - | chr3.2:91960096-91960115 | None:intergenic | 50.0% | |
| CCGACGAAGATTGTCTCGAA+GGG | + | chr3.2:91960093-91960112 | MS.gene063168:intron | 50.0% | |
| CCTTCGAGACAATCTTCGTC+GGG | - | chr3.2:91960095-91960114 | None:intergenic | 50.0% | |
| GAGAAACACTTGTGTGGACC+AGG | - | chr3.2:91958468-91958487 | None:intergenic | 50.0% | |
| GGTTTCCCTTGTATTCTGGC+CGG | - | chr3.2:91960153-91960172 | None:intergenic | 50.0% | |
| GTTTACCCGGCCAGAATACA+AGG | + | chr3.2:91960144-91960163 | MS.gene063168:intron | 50.0% | |
| GTTTCCCTTGTATTCTGGCC+GGG | - | chr3.2:91960152-91960171 | None:intergenic | 50.0% | |
| !! | ATGGTGTCTGGGAAAGTGTC+TGG | + | chr3.2:91959228-91959247 | MS.gene063168:intron | 50.0% |
| !! | GGTGGCTTGCTGCTTAGAAA+AGG | + | chr3.2:91959976-91959995 | MS.gene063168:intron | 50.0% |
| !! | GTTGCCCCTCTTGCTTTTCT+TGG | + | chr3.2:91958050-91958069 | MS.gene063168:CDS | 50.0% |
| !! | TGGTGTCTGGGAAAGTGTCT+GGG | + | chr3.2:91959229-91959248 | MS.gene063168:intron | 50.0% |
| !! | TTCCAACGAGCTTGCTAGCT+TGG | - | chr3.2:91959342-91959361 | None:intergenic | 50.0% |
| ACTTTCCCAGACACCATCCG+CGG | - | chr3.2:91959262-91959281 | None:intergenic | 55.0% | |
| AGCCAAGCTAGCAAGCTCGT+TGG | + | chr3.2:91959337-91959356 | MS.gene063168:intron | 55.0% | |
| AGGGGCAACAAAGCAAGAGC+AGG | - | chr3.2:91958039-91958058 | None:intergenic | 55.0% | |
| CCCGACGAAGATTGTCTCGA+AGG | + | chr3.2:91960092-91960111 | MS.gene063168:intron | 55.0% | |
| TTGAACCGCGGATGGTGTCT+GGG | + | chr3.2:91959254-91959273 | MS.gene063168:intron | 55.0% | |
| TTTGAACCGCGGATGGTGTC+TGG | + | chr3.2:91959253-91959272 | MS.gene063168:intron | 55.0% | |
| ! | AGTGTCTGGGGTTTGAACCG+CGG | + | chr3.2:91959242-91959261 | MS.gene063168:intron | 55.0% |
| ! | GCTTGCTAGCTTGGCTAAGC+TGG | - | chr3.2:91959333-91959352 | None:intergenic | 55.0% |
| !! | GGTGTCTGGGAAAGTGTCTG+GGG | + | chr3.2:91959230-91959249 | MS.gene063168:intron | 55.0% |
| ! | TCTGGGGTTTGAACCGCGGA+TGG | + | chr3.2:91959246-91959265 | MS.gene063168:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 91958030 | 91961402 | 91958030 | ID=MS.gene063168 |
| chr3.2 | mRNA | 91958030 | 91961402 | 91958030 | ID=MS.gene063168.t1;Parent=MS.gene063168 |
| chr3.2 | exon | 91958030 | 91958071 | 91958030 | ID=MS.gene063168.t1.exon1;Parent=MS.gene063168.t1 |
| chr3.2 | CDS | 91958030 | 91958071 | 91958030 | ID=cds.MS.gene063168.t1;Parent=MS.gene063168.t1 |
| chr3.2 | exon | 91960356 | 91961402 | 91960356 | ID=MS.gene063168.t1.exon2;Parent=MS.gene063168.t1 |
| chr3.2 | CDS | 91960356 | 91961402 | 91960356 | ID=cds.MS.gene063168.t1;Parent=MS.gene063168.t1 |
| Gene Sequence |
| Protein sequence |
