AlfalfaGEDB | MS.gene056694

M. sativa cultivar XinJiangDaYe / MS.gene056694

KEGG: -
GO: -
PFAM: PF03181.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056694.t1	XP_003606871.2	95.7	301	13	0	1	301	1	301	1.30E-153	552.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056694.t1	Q9XI99	45.4	229	120	2	69	292	52	280	1.0e-53	211.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056694.t1	I3STE5	95.7	301	13	0	1	301	1	301	9.6e-154	552.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene056694	-0.803417	3.52E-49	-1.69E-46
MS.gene04921	MS.gene056694	0.829604	4.69E-55	-1.69E-46
MS.gene04932	MS.gene056694	0.836701	8.02E-57	-1.69E-46
MS.gene049633	MS.gene056694	-0.805751	1.15E-49	-1.69E-46
MS.gene050170	MS.gene056694	-0.838213	3.29E-57	-1.69E-46
MS.gene050323	MS.gene056694	-0.801012	1.10E-48	-1.69E-46
MS.gene050338	MS.gene056694	0.846658	1.89E-59	-1.69E-46
MS.gene050577	MS.gene056694	-0.826606	2.47E-54	-1.69E-46
MS.gene050868	MS.gene056694	-0.819367	1.21E-52	-1.69E-46
MS.gene050871	MS.gene056694	-0.817469	3.25E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056694.t1	MTR_4g069680	96.284	296	11	0	6	301	1	296	0.0	603
MS.gene056694.t1	MTR_3g116410	68.000	275	77	1	27	301	22	285	1.00e-135	385
MS.gene056694.t1	MTR_3g107830	70.683	249	71	1	55	301	17	265	9.68e-131	372
MS.gene056694.t1	MTR_3g116380	46.909	275	143	2	19	291	29	302	5.25e-92	275
MS.gene056694.t1	MTR_3g116270	46.460	226	118	1	66	291	283	505	1.51e-69	224
MS.gene056694.t1	MTR_4g069040	43.096	239	131	3	55	291	274	509	5.80e-68	220
MS.gene056694.t1	MTR_4g069570	43.478	230	125	4	64	291	109	335	3.01e-67	213
MS.gene056694.t1	MTR_3g116320	44.690	226	122	1	66	291	465	687	2.53e-65	217
MS.gene056694.t1	MTR_4g069550	46.119	219	113	4	75	291	247	462	3.78e-65	212
MS.gene056694.t1	MTR_4g069520	43.836	219	118	3	75	291	507	722	1.98e-60	204

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056694.t1	AT1G49320	45.415	229	120	2	69	292	52	280	2.66e-68	214
MS.gene056694.t1	AT5G25610	40.000	225	130	4	67	289	168	389	6.24e-51	172
MS.gene056694.t1	AT1G70370	33.628	226	127	6	75	290	411	623	2.47e-30	120
MS.gene056694.t1	AT1G70370	33.628	226	127	6	75	290	411	623	2.47e-30	120
MS.gene056694.t1	AT1G23760	32.353	204	120	5	92	290	429	619	6.30e-28	113
MS.gene056694.t1	AT1G60390	30.222	225	134	7	75	289	409	620	3.64e-26	108

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Find 64 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTAGGGGAAATTGAA+GGG	0.620878	4.3:-35726442	None:intergenic
AAGGGTATCTACCATTGCTT+TGG	0.378961	4.3:-35726558	None:intergenic
AATTTCACTTCTCCTTTGAT+GGG	0.416780	4.3:-35726599	None:intergenic
ACACCCTGAACTTCCAATTT+TGG	0.159002	4.3:-35727028	None:intergenic
ACATGGTCATGTTTCATTTC+AGG	0.187970	4.3:+35726937	MS.gene056694:CDS
ACCCATATGAAATTATCAGC+TGG	0.518839	4.3:-35727004	None:intergenic
ACCTTGAAAGACTTAAAAGT+TGG	0.422790	4.3:+35726386	MS.gene056694:CDS
AGCAGAGCAAGAGAATTAGC+TGG	0.551256	4.3:+35726242	MS.gene056694:CDS
AGCTATGGTTGTTTGTCATA+TGG	0.433565	4.3:+35726898	MS.gene056694:CDS
AGGATCTCAGATATAAACTT+TGG	0.448641	4.3:-35726046	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTTAGGGGAAATTGAA+GGG	-	chr4.3:35726445-35726464	None:intergenic	30.0%
AATTTCACTTCTCCTTTGAT+GGG	-	chr4.3:35726602-35726621	None:intergenic	30.0%
ACCTTGAAAGACTTAAAAGT+TGG	+	chr4.3:35726386-35726405	MS.gene056694:CDS	30.0%
AGAAATAGAGTTCCAAGAAA+AGG	-	chr4.3:35726130-35726149	None:intergenic	30.0%
AGGATCTCAGATATAAACTT+TGG	-	chr4.3:35726049-35726068	None:intergenic	30.0%
ATAGTCAAGAAAGTGAGAAT+AGG	+	chr4.3:35726831-35726850	MS.gene056694:CDS	30.0%
CCTTGAAAGACTTAAAAGTT+GGG	+	chr4.3:35726387-35726406	MS.gene056694:CDS	30.0%
TATTCTCACTTTCTTGACTA+TGG	-	chr4.3:35726832-35726851	None:intergenic	30.0%
TCATATGGATACTTCTCATT+GGG	+	chr4.3:35726913-35726932	MS.gene056694:CDS	30.0%
TCATCTACTAGTACTAATCA+CGG	+	chr4.3:35726075-35726094	MS.gene056694:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	35726025	35727063	35726025	ID=MS.gene056694
chr4.3	mRNA	35726025	35727063	35726025	ID=MS.gene056694.t1;Parent=MS.gene056694
chr4.3	exon	35726025	35726096	35726025	ID=MS.gene056694.t1.exon1;Parent=MS.gene056694.t1
chr4.3	CDS	35726025	35726096	35726025	ID=cds.MS.gene056694.t1;Parent=MS.gene056694.t1
chr4.3	exon	35726230	35727063	35726230	ID=MS.gene056694.t1.exon2;Parent=MS.gene056694.t1
chr4.3	CDS	35726230	35727063	35726230	ID=cds.MS.gene056694.t1;Parent=MS.gene056694.t1

Gene Sequence

>MS.gene056694

ATGCTAAGCAGAAACATGAGTCCAAAGTTTATATCTGAGATCCTCTTTCTTCATCTACTAGTACTAATCACGGTATCTTATGTTATATGCATTTTTTTCTTTCCTTTTCTTGGAACTCTATTTCTATATTCAAATATGGATATAACAATATTTTTTTTTTAACATATCCTTACTCTAAATTGCAAAGCTCATTAAATTTTTGCAGATTTTTTATGGAAGCAGAGCAAGAGAATTAGCTGGAACAGAAAGCAAACTCTTGGATATTGCACTGAACAAAACTGCTACTAATGAACATCAAACAGAACACAAACATCATGCACATAATCACAATCACATGGACCCTTCTGTTATGGTGTTCTTCACCTTGAAAGACTTAAAAGTTGGGAAAAGAATGCAAATTAATTTTCCCAAAAGAGACCCTTCAATTTCCCCTAAGTTTTGGCCAAGAGACAAAGCTGATTCACTTCCTTTTTCTTTGAACAAACTTCCAACTCTTCTCAAAATCTTCTCTTTATCCCAAGACTCTCCACAAGCCAAAGCAATGGTAGATACCCTTACAGAATGTGAGAGCAAACCCATCAAAGGAGAAGTGAAATTCTGCGCGACTTCTTTAGAATCTATGCTTGATTTCACTCAAACCATTCTTGGTTTTTCAAATGATCTTCAAGTTTATGCAACTTCACATTTAACCAAATCAAGTGTCACTTTTCAGAACTATACTATATTAGACAAGATTATGAGGATTTCAGCTCCAAAGATGGTGGCATGTCACACTATGCCTTACCCTTATGCTGTTTTCTATTGCCATAGTCAAGAAAGTGAGAATAGGATATATAGAGTTTCACTTGTTGGTGATAATGGGGATTTGGTGGAAGCTATGGTTGTTTGTCATATGGATACTTCTCATTGGGGACATGGTCATGTTTCATTTCAGGTTCTTGGTGTTGTGCCAGGAAGTTCTAATGTGTGTCACTTTTTTCCAGCTGATAATTTCATATGGGTTCCAAAATTGGAAGTTCAGGGTGTTTCAGACATGTGA

Protein sequence

>MS.gene056694.t1

MLSRNMSPKFISEILFLHLLVLITIFYGSRARELAGTESKLLDIALNKTATNEHQTEHKHHAHNHNHMDPSVMVFFTLKDLKVGKRMQINFPKRDPSISPKFWPRDKADSLPFSLNKLPTLLKIFSLSQDSPQAKAMVDTLTECESKPIKGEVKFCATSLESMLDFTQTILGFSNDLQVYATSHLTKSSVTFQNYTILDKIMRISAPKMVACHTMPYPYAVFYCHSQESENRIYRVSLVGDNGDLVEAMVVCHMDTSHWGHGHVSFQVLGVVPGSSNVCHFFPADNFIWVPKLEVQGVSDM