AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063260.t1 MTR_1g018840 97.655 469 11 0 1 469 6 474 0.0 959
MS.gene063260.t1 MTR_1g018840 97.489 438 11 0 1 438 6 443 0.0 892
MS.gene063260.t1 MTR_3g102220 72.043 465 127 2 7 469 11 474 0.0 687
MS.gene063260.t1 MTR_1g107550 67.972 434 132 3 22 454 26 453 0.0 598
MS.gene063260.t1 MTR_4g094918 64.543 361 114 1 3 363 2 348 6.68e-177 500
MS.gene063260.t1 MTR_3g112430 51.020 392 181 6 49 438 35 417 6.68e-132 389
MS.gene063260.t1 MTR_3g116080 52.339 342 151 4 16 357 19 348 7.97e-127 372
MS.gene063260.t1 MTR_3g075390 50.411 365 171 7 11 373 6 362 3.61e-123 363
MS.gene063260.t1 MTR_4g104370 49.862 363 172 7 13 373 6 360 1.03e-117 349
MS.gene063260.t1 MTR_2g016180 44.787 422 208 8 42 448 43 454 4.05e-117 352
MS.gene063260.t1 MTR_2g016270 44.286 420 198 8 42 448 43 439 7.46e-115 346
MS.gene063260.t1 MTR_4g079470 51.227 326 142 7 37 355 28 343 2.31e-112 335
MS.gene063260.t1 MTR_4g079770 53.035 313 130 7 50 355 41 343 4.63e-112 334
MS.gene063260.t1 MTR_5g022560 48.864 352 151 8 16 355 8 342 7.79e-112 334
MS.gene063260.t1 MTR_4g047610 50.462 325 145 6 38 355 26 341 1.50e-110 330
MS.gene063260.t1 MTR_4g079800 52.396 313 132 7 50 355 41 343 1.62e-110 330
MS.gene063260.t1 MTR_2g075830 48.980 343 153 7 19 355 13 339 1.13e-109 328
MS.gene063260.t1 MTR_4g080730 52.597 308 135 6 50 355 40 338 3.91e-108 324
MS.gene063260.t1 MTR_4g080700 51.948 308 137 6 50 355 40 338 9.58e-107 320
MS.gene063260.t1 MTR_4g079440 45.559 349 179 6 10 356 5 344 2.46e-106 320
MS.gene063260.t1 MTR_4g107930 50.467 321 140 8 45 355 32 343 4.87e-106 319
MS.gene063260.t1 MTR_2g090890 46.307 352 166 7 14 358 3 338 5.42e-106 318
MS.gene063260.t1 MTR_4g080360 47.664 321 161 6 39 356 25 341 6.38e-100 303
MS.gene063260.t1 MTR_2g083930 45.342 322 172 4 38 356 23 343 9.43e-98 298
MS.gene063260.t1 MTR_7g078600 46.326 313 149 10 50 358 42 339 6.43e-86 267
MS.gene063260.t1 MTR_7g079230 43.077 325 166 8 37 355 23 334 5.73e-85 265
MS.gene063260.t1 MTR_2g015850 47.797 295 145 7 64 356 76 363 1.33e-80 254
MS.gene063260.t1 MTR_4g065077 40.872 367 183 14 5 357 11 357 7.52e-76 242
MS.gene063260.t1 MTR_2g015920 37.228 368 207 12 9 362 8 365 9.25e-71 229
MS.gene063260.t1 MTR_2g015930 38.950 362 195 13 11 357 9 359 3.42e-69 224
MS.gene063260.t1 MTR_4g125300 38.227 361 190 12 11 356 6 348 9.65e-67 218
MS.gene063260.t1 MTR_2g067900 42.902 317 165 11 50 356 16 326 2.59e-66 216
MS.gene063260.t1 MTR_8g086470 37.741 363 184 13 5 357 27 357 6.98e-66 216
MS.gene063260.t1 MTR_4g071060 38.983 354 168 12 13 336 6 341 3.74e-63 209
MS.gene063260.t1 MTR_1g023210 41.611 298 148 8 56 336 57 345 4.63e-63 209
MS.gene063260.t1 MTR_2g067560 39.255 349 186 15 48 380 14 352 1.34e-54 196
MS.gene063260.t1 MTR_1g094135 33.962 371 201 10 4 348 6 358 1.50e-54 187
MS.gene063260.t1 MTR_2g064475 37.101 345 169 14 48 354 14 348 3.31e-54 185
MS.gene063260.t1 MTR_1g023810 45.249 221 111 7 138 354 47 261 4.85e-52 177
MS.gene063260.t1 MTR_2g066980 32.861 353 183 12 19 355 3 317 1.44e-50 175
MS.gene063260.t1 MTR_7g078630 37.162 296 134 8 28 311 690 945 1.69e-47 176
MS.gene063260.t1 MTR_4g072790 35.714 294 146 8 50 336 48 305 9.23e-46 162
MS.gene063260.t1 MTR_2g016380 40.553 217 117 4 240 446 18 232 2.58e-45 159
MS.gene063260.t1 MTR_4g072340 32.551 341 179 10 7 336 9 309 6.55e-44 157
MS.gene063260.t1 MTR_4g073660 34.459 296 151 7 50 336 47 308 1.56e-43 156
MS.gene063260.t1 MTR_1g025450 43.103 174 77 5 138 308 53 207 1.06e-32 130
MS.gene063260.t1 MTR_7g078580 50.476 105 49 3 258 361 4 106 6.47e-29 110
MS.gene063260.t1 MTR_2g015840 39.259 135 78 2 42 175 25 156 1.63e-27 111
MS.gene063260.t1 MTR_2g015840 44.954 109 57 3 248 355 164 270 1.36e-24 103
MS.gene063260.t1 MTR_7g079130 50.538 93 44 2 265 356 6 97 1.02e-24 98.2
MS.gene063260.t1 MTR_3g029560 33.962 212 111 8 151 356 49 237 2.67e-21 93.2
MS.gene063260.t1 MTR_7g078310 47.917 96 47 2 140 232 152 247 1.30e-20 91.7
MS.gene063260.t1 MTR_7g111060 27.758 281 158 12 97 348 66 330 7.07e-20 91.3
MS.gene063260.t1 MTR_2g047960 48.101 79 41 0 149 227 7 85 1.84e-18 80.9
MS.gene063260.t1 MTR_7g111050 26.715 277 166 11 97 348 63 327 5.09e-17 82.8
MS.gene063260.t1 MTR_8g087510 33.588 131 79 7 181 308 23 148 4.23e-12 65.1
MS.gene063260.t1 MTR_7g079260 42.466 73 24 2 282 353 7 62 7.43e-11 59.7
MS.gene063260.t1 MTR_1g009480 27.451 102 66 1 5 106 1 94 7.88e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063260.t1 AT1G47128 71.739 460 120 4 8 464 8 460 0.0 656
MS.gene063260.t1 AT5G43060 71.429 455 119 5 9 459 9 456 0.0 640
MS.gene063260.t1 AT3G19390 59.465 449 161 8 9 454 8 438 0.0 530
MS.gene063260.t1 AT4G36880 62.195 328 118 2 41 362 40 367 6.71e-151 434
MS.gene063260.t1 AT1G09850 51.551 419 179 7 44 455 26 427 8.81e-145 421
MS.gene063260.t1 AT3G19400 59.133 323 122 6 40 358 34 350 2.22e-136 397
MS.gene063260.t1 AT4G23520 55.028 358 142 8 5 358 9 351 1.54e-135 395
MS.gene063260.t1 AT4G11310 51.524 361 165 6 1 358 1 354 7.38e-127 373
MS.gene063260.t1 AT4G11320 51.801 361 164 6 3 358 6 361 1.40e-125 370
MS.gene063260.t1 AT4G11320 51.801 361 164 6 3 358 6 361 1.40e-125 370
MS.gene063260.t1 AT3G48340 51.831 355 164 5 12 365 4 352 2.81e-124 366
MS.gene063260.t1 AT1G20850 54.167 336 142 5 23 357 30 354 2.09e-122 361
MS.gene063260.t1 AT4G35350 50.142 351 164 3 7 357 14 353 4.24e-121 358
MS.gene063260.t1 AT5G50260 55.346 318 136 5 49 364 37 350 2.42e-118 351
MS.gene063260.t1 AT1G06260 47.714 350 164 6 11 357 10 343 4.54e-109 327
MS.gene063260.t1 AT3G48350 47.790 362 172 7 5 362 1 349 3.25e-108 325
MS.gene063260.t1 AT5G45890 45.042 353 173 6 7 355 9 344 5.13e-105 317
MS.gene063260.t1 AT3G43960 51.327 339 150 11 37 368 28 358 1.74e-102 311
MS.gene063260.t1 AT3G19400 58.964 251 94 5 40 286 34 279 8.09e-101 303
MS.gene063260.t1 AT2G34080 42.033 364 183 9 1 356 1 344 8.91e-91 280
MS.gene063260.t1 AT2G27420 42.936 361 183 10 5 356 1 347 2.22e-90 279
MS.gene063260.t1 AT3G49340 46.815 314 152 9 50 356 35 340 4.27e-90 278
MS.gene063260.t1 AT4G35350 47.535 284 138 3 7 290 14 286 1.16e-88 272
MS.gene063260.t1 AT1G29080 41.905 315 175 7 46 356 35 345 1.86e-81 256
MS.gene063260.t1 AT1G29090 40.000 365 179 11 9 356 13 354 3.29e-81 256
MS.gene063260.t1 AT3G48350 44.097 288 148 5 5 290 1 277 1.99e-73 233
MS.gene063260.t1 AT1G29110 35.673 342 202 6 19 356 6 333 1.33e-69 225
MS.gene063260.t1 AT5G60360 38.000 350 180 12 27 356 24 356 1.77e-65 215
MS.gene063260.t1 AT3G45310 36.000 375 202 12 1 356 1 356 1.82e-64 212
MS.gene063260.t1 AT4G39090 39.748 317 148 7 42 334 46 343 7.77e-64 211
MS.gene063260.t1 AT5G60360 37.429 350 181 12 27 356 24 355 3.53e-63 209
MS.gene063260.t1 AT5G60360 37.681 345 184 12 27 352 24 356 1.04e-62 208
MS.gene063260.t1 AT2G21430 36.212 359 185 10 1 334 1 340 1.17e-62 207
MS.gene063260.t1 AT3G45310 35.544 377 200 13 1 356 1 355 7.17e-62 206
MS.gene063260.t1 AT4G16190 35.574 357 195 11 6 336 3 350 3.71e-57 194
MS.gene063260.t1 AT3G54940 33.053 357 196 10 6 336 8 347 2.38e-51 178
MS.gene063260.t1 AT3G54940 32.042 284 161 7 6 272 8 276 7.44e-39 142
MS.gene063260.t1 AT4G01610 27.491 291 172 12 97 361 66 343 1.84e-20 93.2
MS.gene063260.t1 AT1G02305 27.698 278 162 11 97 348 69 333 7.37e-20 91.3
MS.gene063260.t1 AT4G01610 26.804 291 174 12 97 361 66 343 1.18e-18 87.8
MS.gene063260.t1 AT1G02300 28.095 210 122 8 161 348 148 350 4.49e-13 70.9

Find 129 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAAATGGGAAAGATTAT+TGG 0.227075 1.3:+4510119 MS.gene063260:CDS
GAACCGTAGGATGAAGAAAT+TGG 0.244550 1.3:+4507575 MS.gene063260:CDS
TATGTTCATCAATGAATTTA+AGG 0.255434 1.3:-4507455 None:intergenic
GTTGGATACGGTACAGAAAA+TGG 0.255932 1.3:+4510106 MS.gene063260:CDS
GGTGGTGATGGTCCAGGGTT+AGG 0.264790 1.3:-4510280 None:intergenic
GGGTTCTGTCCATTCTTAAT+TGG 0.270191 1.3:-4510256 None:intergenic
TTCCTCCAATCAACAGATTC+AGG 0.289567 1.3:-4507645 None:intergenic
GCCAAGCCTCACTGGGCCTT+TGG 0.294833 1.3:+4511716 MS.gene063260:CDS
TGTTGCTGTATTTACGAGTA+TGG 0.314590 1.3:+4510364 MS.gene063260:CDS
TTTCTCACCTAAACCGTTGT+AGG 0.323971 1.3:-4507403 None:intergenic
AACTTACATATTCATATAAC+TGG 0.326706 1.3:-4509749 None:intergenic
AGGATGCAATGGTGGACTTA+TGG 0.331252 1.3:+4509370 MS.gene063260:CDS
TGAATTCGACATATAGATTA+GGG 0.336748 1.3:+4507484 MS.gene063260:CDS
GTGGTGATGGTCCAGGGTTA+GGG 0.341154 1.3:-4510279 None:intergenic
GGAAAATCCTACAACGGTTT+AGG 0.345309 1.3:+4507396 MS.gene063260:CDS
ATGGTAGATGTGACCAGAAC+AGG 0.354867 1.3:+4509465 MS.gene063260:CDS
GAAATTCATGGGGTGGTAGC+TGG 0.356281 1.3:+4510149 MS.gene063260:CDS
TTGAATTCGACATATAGATT+AGG 0.369544 1.3:+4507483 MS.gene063260:CDS
CGTTAGTTAGATCCGCGAAC+CGG 0.375000 1.3:-4507512 None:intergenic
CAGACAGATGGTGGCTTGAT+AGG 0.385214 1.3:-4510307 None:intergenic
GCACTCCTGCCAAGCCTCAC+TGG 0.389486 1.3:+4511708 MS.gene063260:CDS
TGTTCCTGCTTATGATGAAT+TGG 0.389594 1.3:+4509662 MS.gene063260:CDS
TCTTGTCAGGGTGTATTTAC+CGG 0.390275 1.3:+4510046 MS.gene063260:intron
CCTATCGCCGTTGCTGTTGA+AGG 0.401421 1.3:+4509711 MS.gene063260:CDS
ATTGGATTGTGAGAAATTCA+TGG 0.410060 1.3:+4510137 MS.gene063260:CDS
CCAAGTAACTAACCCTGTTC+TGG 0.415431 1.3:-4509478 None:intergenic
TACCCTTACAAGGCTATTGA+TGG 0.421160 1.3:+4509446 MS.gene063260:CDS
CTACCATCAATAGCCTTGTA+AGG 0.422671 1.3:-4509449 None:intergenic
AATTGCCTGAATCTGTTGAT+TGG 0.426885 1.3:+4507640 MS.gene063260:CDS
AAGGCCCAGTGAGGCTTGGC+AGG 0.429824 1.3:-4511713 None:intergenic
CACTCCTGCCAAGCCTCACT+GGG 0.436398 1.3:+4511709 MS.gene063260:CDS
CCATTCTTAATTGGATAAGA+TGG 0.437304 1.3:-4510247 None:intergenic
AAATTCATGGGGTGGTAGCT+GGG 0.440858 1.3:+4510150 MS.gene063260:CDS
TCAGCAATCGCAGCTGTTGA+AGG 0.443055 1.3:+4509269 MS.gene063260:CDS
TTTCAATGAAGGGAGTTGTT+GGG 0.446061 1.3:+4509241 MS.gene063260:intron
GGTGATGGTCCAGGGTTAGG+GGG 0.448618 1.3:-4510277 None:intergenic
TGGTGATGGTCCAGGGTTAG+GGG 0.449337 1.3:-4510278 None:intergenic
AAGCCTCACTGGGCCTTTGG+TGG 0.453398 1.3:+4511719 MS.gene063260:CDS
GTGATGGTCCAGGGTTAGGG+GGG 0.453507 1.3:-4510276 None:intergenic
CATAGTCAACACTTCTTCGT+TGG 0.459007 1.3:-4507349 None:intergenic
AGGAAGGAAGGTGCTGTTGT+TGG 0.459612 1.3:+4507663 MS.gene063260:CDS
TCGTGCTGGACTTTGTCTTA+AGG 0.462543 1.3:+4510486 MS.gene063260:CDS
TTCACTATCAGAACAAGAAC+TGG 0.467996 1.3:+4509322 MS.gene063260:CDS
AATTTCTTCATCCTACGGTT+CGG 0.472057 1.3:-4507573 None:intergenic
GGTGAAGGTGGTGATGGTCC+AGG 0.475487 1.3:-4510286 None:intergenic
TGATGAATTGGCCTTGCAAA+AGG 0.476220 1.3:+4509674 MS.gene063260:CDS
GGAATAAATAAGATTGTGAC+AGG 0.481755 1.3:+4509290 MS.gene063260:CDS
AGGAGATGATCGACATGTCT+AGG 0.481788 1.3:-4507287 None:intergenic
TGAAGAAATTGGGTGGTGTA+AGG 0.482021 1.3:+4507586 MS.gene063260:CDS
CACCCAATTTCTTCATCCTA+CGG 0.483167 1.3:-4507578 None:intergenic
TTGAATGACTTCACTCCCAA+TGG 0.485328 1.3:-4511683 None:intergenic
AGTGCTTACCACAACTTGCT+TGG 0.487527 1.3:-4507695 None:intergenic
GCTTGTTGATTTGTCTGGGT+GGG 0.490913 1.3:-4507319 None:intergenic
CAACAGCAACGGCGATAGGC+TGG 0.494154 1.3:-4509707 None:intergenic
ATTAGGGTTGACCCGGTTCG+CGG 0.494343 1.3:+4507500 MS.gene063260:CDS
CCTTCAACAGCAACGGCGAT+AGG 0.495351 1.3:-4509711 None:intergenic
ACCAAAGGCCCAGTGAGGCT+TGG 0.495376 1.3:-4511717 None:intergenic
AACCGTAGGATGAAGAAATT+GGG 0.496972 1.3:+4507576 MS.gene063260:CDS
TTGGATACGGTACAGAAAAT+GGG 0.502646 1.3:+4510107 MS.gene063260:CDS
CCTGTCTGTGACACTCGTGC+TGG 0.506173 1.3:+4510472 MS.gene063260:CDS
TGGAAGATCTTGCTTTGAGT+GGG 0.510888 1.3:+4510384 MS.gene063260:CDS
CCATCTTATCCAATTAAGAA+TGG 0.514473 1.3:+4510247 MS.gene063260:CDS
TGAATGACTTCACTCCCAAT+GGG 0.526918 1.3:-4511682 None:intergenic
TGCTTGTTGATTTGTCTGGG+TGG 0.529438 1.3:-4507320 None:intergenic
AAATTCATTGATGAACATAA+CGG 0.530458 1.3:+4507459 MS.gene063260:CDS
TCAAGCAGAGCAGGAAAGTG+TGG 0.532736 1.3:+4510211 MS.gene063260:CDS
GGCTAGTGAAACTGTGAAAG+TGG 0.534429 1.3:-4507265 None:intergenic
GTTAGTTAGATCCGCGAACC+GGG 0.534519 1.3:-4507511 None:intergenic
AGCTACTACAGCTGTGCTGA+AGG 0.535391 1.3:+4510334 MS.gene063260:CDS
TTTGAGTTCATCATCAGTAA+TGG 0.537702 1.3:+4509401 MS.gene063260:CDS
AATCTAGCTTCAAGCAGAGC+AGG 0.546872 1.3:+4510202 MS.gene063260:CDS
TTGGATTGTGAGAAATTCAT+GGG 0.548066 1.3:+4510138 MS.gene063260:CDS
GACCATGGTGTTGCAGCTGT+TGG 0.548818 1.3:+4510088 MS.gene063260:CDS
TGCCTGAATCTGTTGATTGG+AGG 0.549740 1.3:+4507643 MS.gene063260:CDS
TGCTGTTGAAGGAGGCGGTA+GGG 0.550318 1.3:+4509722 MS.gene063260:CDS
CAGGGCAAGAATAACCCATT+GGG 0.551019 1.3:+4511668 MS.gene063260:intron
CATCTTGTTCTTACCACCAA+AGG 0.551674 1.3:-4511732 None:intergenic
GGTGGTAGCTGGGGTGAACA+AGG 0.554597 1.3:+4510160 MS.gene063260:CDS
TTGATAGGTGAAGGTGGTGA+TGG 0.555756 1.3:-4510292 None:intergenic
GCCGTTGCTGTTGAAGGAGG+CGG 0.557434 1.3:+4509717 MS.gene063260:CDS
GGTGTTGCAGCTGTTGGATA+CGG 0.561703 1.3:+4510094 MS.gene063260:CDS
CATATAGATTAGGGTTGACC+CGG 0.561757 1.3:+4507493 MS.gene063260:CDS
ATGGAAGATCTTGCTTTGAG+TGG 0.563923 1.3:+4510383 MS.gene063260:CDS
TAGTGCCGTTCCACATCTAC+CGG 0.569067 1.3:-4510065 None:intergenic
CCAGCACGAGTGTCACAGAC+AGG 0.571924 1.3:-4510472 None:intergenic
TGAAGAGGATTACCCTTACA+AGG 0.572769 1.3:+4509436 MS.gene063260:CDS
AATTCATGGGGTGGTAGCTG+GGG 0.574383 1.3:+4510151 MS.gene063260:CDS
GGAGATGATCGACATGTCTA+GGG 0.575045 1.3:-4507286 None:intergenic
ACAGGGCAAGAATAACCCAT+TGG 0.575173 1.3:+4511667 MS.gene063260:intron
AATCGTTATGCGCCACGTGT+CGG 0.576425 1.3:+4507612 MS.gene063260:CDS
GTTTAGGTGAGAAAGACAAA+AGG 0.579754 1.3:+4507412 MS.gene063260:CDS
GTCAAAGACCAAGCAAGTTG+TGG 0.584862 1.3:+4507687 MS.gene063260:CDS
AAGGCCAATTCATCATAAGC+AGG 0.585009 1.3:-4509666 None:intergenic
GGTGTATTTACCGGTAGATG+TGG 0.590389 1.3:+4510055 MS.gene063260:CDS
TACCATCAATAGCCTTGTAA+GGG 0.599159 1.3:-4509448 None:intergenic
GAGTTCATCATCAGTAATGG+TGG 0.599792 1.3:+4509404 MS.gene063260:CDS
ACTATCAGAACAAGAACTGG+TGG 0.602270 1.3:+4509325 MS.gene063260:CDS
GTGAAGGTGGTGATGGTCCA+GGG 0.603987 1.3:-4510285 None:intergenic
ATCGCCGTTGCTGTTGAAGG+AGG 0.609464 1.3:+4509714 MS.gene063260:CDS
TTGCTGTTGAAGGAGGCGGT+AGG 0.609931 1.3:+4509721 MS.gene063260:CDS
GAAGAGTGGTTAGTGAAACA+TGG 0.615801 1.3:+4507375 MS.gene063260:CDS
CAAAGATCGATCCGAACCGT+AGG 0.618623 1.3:+4507562 MS.gene063260:CDS
CAGCAAGTAGCAGACTCAAG+AGG 0.620435 1.3:-4510415 None:intergenic
TAGTAGCTGTCACAGACAGA+TGG 0.620790 1.3:-4510319 None:intergenic
TGGTAGATGTGACCAGAACA+GGG 0.623188 1.3:+4509466 MS.gene063260:CDS
TGGTGGCATTGACTCTGAAG+AGG 0.626193 1.3:+4509421 MS.gene063260:CDS
TCATACAACGAAGGATGCAA+TGG 0.627683 1.3:+4509359 MS.gene063260:CDS
TACAACGAAGGATGCAATGG+TGG 0.630463 1.3:+4509362 MS.gene063260:CDS
GGCAATTTATCACCGACACG+TGG 0.638153 1.3:-4507624 None:intergenic
TGTTGACTATGTACGAAGAG+TGG 0.640568 1.3:+4507361 MS.gene063260:CDS
TAGCTGTCACAGACAGATGG+TGG 0.645708 1.3:-4510316 None:intergenic
ATTACTGATGATGAACTCAA+AGG 0.646757 1.3:-4509399 None:intergenic
GGTGGCTTGATAGGTGAAGG+TGG 0.647988 1.3:-4510298 None:intergenic
ACCGCCTCCTTCAACAGCAA+CGG 0.651172 1.3:-4509718 None:intergenic
TCTGTTGATTGGAGGAAGGA+AGG 0.651628 1.3:+4507651 MS.gene063260:CDS
TGAATCTGTTGATTGGAGGA+AGG 0.656666 1.3:+4507647 MS.gene063260:CDS
CACAGACAGGATACTCATGA+GGG 0.662230 1.3:-4510459 None:intergenic
TCACAGACAGGATACTCATG+AGG 0.662392 1.3:-4510460 None:intergenic
ATTTACCGGTAGATGTGGAA+CGG 0.675984 1.3:+4510060 MS.gene063260:CDS
ATCCAACAGCTGCAACACCA+TGG 0.676166 1.3:-4510090 None:intergenic
TGTGGAACGGCACTAGACCA+TGG 0.678729 1.3:+4510073 MS.gene063260:CDS
CGTAGGATGAAGAAATTGGG+TGG 0.680087 1.3:+4507579 MS.gene063260:CDS
GATGGTGGCTTGATAGGTGA+AGG 0.689206 1.3:-4510301 None:intergenic
GGAAGATCTTGCTTTGAGTG+GGG 0.689687 1.3:+4510385 MS.gene063260:CDS
AAACATGGAAAATCCTACAA+CGG 0.700433 1.3:+4507390 MS.gene063260:CDS
ATTGTGAGAAATTCATGGGG+TGG 0.703535 1.3:+4510142 MS.gene063260:CDS
TGTGATACATCATACAACGA+AGG 0.706999 1.3:+4509350 MS.gene063260:CDS
TTACCACCAAAGGCCCAGTG+AGG 0.714697 1.3:-4511722 None:intergenic
TGGATTGTGAGAAATTCATG+GGG 0.737069 1.3:+4510139 MS.gene063260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGTAATACAAAAAAAAAA+AGG - chr1.3:4508571-4508590 None:intergenic 10.0%
!!! ACAAAATTTTAATTCATAAA+AGG + chr1.3:4508271-4508290 MS.gene063260:intron 10.0%
!!! CAAAATTTTAATTCATAAAA+GGG + chr1.3:4508272-4508291 MS.gene063260:intron 10.0%
!!! CCTATAAATTTTTTATAAAA+AGG + chr1.3:4511045-4511064 MS.gene063260:intron 10.0%
!!! CCTTTTTATAAAAAATTTAT+AGG - chr1.3:4511048-4511067 None:intergenic 10.0%
!! AAATTATCCTTATTAACTAT+TGG - chr1.3:4511259-4511278 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr1.3:4511258-4511277 MS.gene063260:intron 15.0%
!! GTCAAAAAAAATAAATTAAC+AGG - chr1.3:4509957-4509976 None:intergenic 15.0%
!! TTAAACTAAAAACAATTCTT+TGG + chr1.3:4508524-4508543 MS.gene063260:intron 15.0%
!!! AACAAAAAAGCATTATATTA+TGG - chr1.3:4509037-4509056 None:intergenic 15.0%
!!! ATAATATTAGCAATTTTTTG+TGG - chr1.3:4509213-4509232 None:intergenic 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - chr1.3:4511132-4511151 None:intergenic 15.0%
!!! GTATGATTTAAAATTTTGTA+AGG - chr1.3:4508405-4508424 None:intergenic 15.0%
!!! TCTTAATTTAGTTGTTTTAT+CGG + chr1.3:4511581-4511600 MS.gene063260:intron 15.0%
!!! TTAGATTTTTCTTATTTTCT+TGG + chr1.3:4508081-4508100 MS.gene063260:intron 15.0%
!! AAACAAAGTCAAATTCTTAT+GGG + chr1.3:4511537-4511556 MS.gene063260:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr1.3:4511249-4511268 MS.gene063260:intron 20.0%
!! AAATTCATTGATGAACATAA+CGG + chr1.3:4507459-4507478 MS.gene063260:CDS 20.0%
!! AACTTACATATTCATATAAC+TGG - chr1.3:4509752-4509771 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr1.3:4511172-4511191 None:intergenic 20.0%
!! ATTAATTCTACTATGAAACT+AGG + chr1.3:4509777-4509796 MS.gene063260:intron 20.0%
!! TACAATACACCAAAAATTAT+GGG - chr1.3:4508345-4508364 None:intergenic 20.0%
!! TATGTTCATCAATGAATTTA+AGG - chr1.3:4507458-4507477 None:intergenic 20.0%
!! TATTCAAAATCAATATGTGA+AGG - chr1.3:4509875-4509894 None:intergenic 20.0%
!!! ATCTTCTTTTTTTCAATGAA+GGG + chr1.3:4509231-4509250 MS.gene063260:intron 20.0%
!!! ATTTTCTTGGATATGTTATT+AGG + chr1.3:4508094-4508113 MS.gene063260:intron 20.0%
!!! CTTAATTTAGTTGTTTTATC+GGG + chr1.3:4511582-4511601 MS.gene063260:intron 20.0%
!!! TAATGATGTACTTTAATTTG+TGG + chr1.3:4508001-4508020 MS.gene063260:intron 20.0%
!!! TAGTTTTAAAAGTAGTACTT+TGG - chr1.3:4511235-4511254 None:intergenic 20.0%
!!! TATATTTCGTATGACTTTTA+AGG - chr1.3:4508811-4508830 None:intergenic 20.0%
!!! TATCTTCTTTTTTTCAATGA+AGG + chr1.3:4509230-4509249 MS.gene063260:intron 20.0%
!!! TCCAAGTAATGTTTTAAAAA+TGG - chr1.3:4510741-4510760 None:intergenic 20.0%
!!! TCCATTTTTAAAACATTACT+TGG + chr1.3:4510737-4510756 MS.gene063260:intron 20.0%
! AATCAAACTCAGTTAATCAT+GGG - chr1.3:4509135-4509154 None:intergenic 25.0%
! ACGAATAATAGACATGTTAT+AGG - chr1.3:4511440-4511459 None:intergenic 25.0%
! ATGACAATAGTAAATGTTTG+TGG + chr1.3:4509515-4509534 MS.gene063260:intron 25.0%
! ATTGATATATTGAGTACTCT+TGG - chr1.3:4508985-4509004 None:intergenic 25.0%
! CAAACAAAGTCAAATTCTTA+TGG + chr1.3:4511536-4511555 MS.gene063260:intron 25.0%
! CAATCATTGGTGTAATAATA+TGG + chr1.3:4509001-4509020 MS.gene063260:intron 25.0%
! CTTATAATATATCCATAAGC+TGG + chr1.3:4510989-4511008 MS.gene063260:intron 25.0%
! GTAAACAATCCATACAAATT+TGG - chr1.3:4511614-4511633 None:intergenic 25.0%
! GTACAATACACCAAAAATTA+TGG - chr1.3:4508346-4508365 None:intergenic 25.0%
! GTACTCAATATATCAATCAT+TGG + chr1.3:4508988-4509007 MS.gene063260:intron 25.0%
! TAACACTCTAATTCTTTCAT+TGG + chr1.3:4509567-4509586 MS.gene063260:intron 25.0%
! TAATCAAACTCAGTTAATCA+TGG - chr1.3:4509136-4509155 None:intergenic 25.0%
! TGAATTCGACATATAGATTA+GGG + chr1.3:4507484-4507503 MS.gene063260:CDS 25.0%
! TGATTAACTGAGTTTGATTA+AGG + chr1.3:4509136-4509155 MS.gene063260:intron 25.0%
! TGCATTTGTTTGTTCAATAT+GGG + chr1.3:4508712-4508731 MS.gene063260:intron 25.0%
! TTATTTAAACTGTTTGATCG+TGG - chr1.3:4510661-4510680 None:intergenic 25.0%
! TTGAATAAAAATCATCTGTC+TGG + chr1.3:4509888-4509907 MS.gene063260:intron 25.0%
! TTGAATTCGACATATAGATT+AGG + chr1.3:4507483-4507502 MS.gene063260:CDS 25.0%
! TTGATATATTGAGTACTCTT+GGG - chr1.3:4508984-4509003 None:intergenic 25.0%
! TTGCATTTGTTTGTTCAATA+TGG + chr1.3:4508711-4508730 MS.gene063260:intron 25.0%
!! AATTTTATACTGTGTTGCAT+TGG + chr1.3:4509800-4509819 MS.gene063260:intron 25.0%
!! ATTTTATACTGTGTTGCATT+GGG + chr1.3:4509801-4509820 MS.gene063260:intron 25.0%
!! CATAAGAATTTGACTTTGTT+TGG - chr1.3:4511538-4511557 None:intergenic 25.0%
!! TTAAGGAACATGATAGTTTT+TGG + chr1.3:4509153-4509172 MS.gene063260:intron 25.0%
!! TTTAAGGTAGACATGATTAA+AGG - chr1.3:4508795-4508814 None:intergenic 25.0%
!!! ATTTTAATGATCTGAGAGTT+AGG - chr1.3:4508449-4508468 None:intergenic 25.0%
!!! CTTTGTTTTGTAGTCATATA+AGG + chr1.3:4508602-4508621 MS.gene063260:intron 25.0%
!!! TTCATTGGTTTTAAACTGTT+TGG + chr1.3:4509582-4509601 MS.gene063260:intron 25.0%
!!! TTTTTGATTGGATTTTCACT+TGG + chr1.3:4510545-4510564 MS.gene063260:intron 25.0%
AAACATGGAAAATCCTACAA+CGG + chr1.3:4507390-4507409 MS.gene063260:CDS 30.0%
ACGTAGATAATCATGTAACA+TGG + chr1.3:4508923-4508942 MS.gene063260:intron 30.0%
AGTAAAAGATAAGGTTGACT+TGG - chr1.3:4510517-4510536 None:intergenic 30.0%
ATACAATACACCAAGAAACT+GGG - chr1.3:4508378-4508397 None:intergenic 30.0%
ATCAAACTCAGTTAATCATG+GGG - chr1.3:4509134-4509153 None:intergenic 30.0%
ATCCATGTGTAACAATATCT+GGG + chr1.3:4507961-4507980 MS.gene063260:intron 30.0%
ATGAAATCCCAAAGCAAATA+AGG - chr1.3:4508200-4508219 None:intergenic 30.0%
ATGCAAGCAAGTAAAAGATA+AGG - chr1.3:4510526-4510545 None:intergenic 30.0%
ATTGGATTGTGAGAAATTCA+TGG + chr1.3:4510137-4510156 MS.gene063260:CDS 30.0%
CAGAAAATGGGAAAGATTAT+TGG + chr1.3:4510119-4510138 MS.gene063260:CDS 30.0%
CATTACTTGGAACTAATTGT+TGG + chr1.3:4510750-4510769 MS.gene063260:intron 30.0%
CCAATTTGAGCTGTTTAAAA+CGG - chr1.3:4510631-4510650 None:intergenic 30.0%
CCATCTTATCCAATTAAGAA+TGG + chr1.3:4510247-4510266 MS.gene063260:CDS 30.0%
CCATGTTATGATTGATTGAT+AGG - chr1.3:4508759-4508778 None:intergenic 30.0%
CCATTCTTAATTGGATAAGA+TGG - chr1.3:4510250-4510269 None:intergenic 30.0%
CCTATCAATCAATCATAACA+TGG + chr1.3:4508756-4508775 MS.gene063260:intron 30.0%
GCAAATCAAAATCAATCGTA+TGG - chr1.3:4508496-4508515 None:intergenic 30.0%
GGAATAAATAAGATTGTGAC+AGG + chr1.3:4509290-4509309 MS.gene063260:CDS 30.0%
GGGAATTATCCAAATTTGTA+TGG + chr1.3:4511602-4511621 MS.gene063260:intron 30.0%
GTGATCAAGCACATAAAATT+TGG - chr1.3:4511649-4511668 None:intergenic 30.0%
TACTTCTGCTCAAGAAATAA+AGG - chr1.3:4509080-4509099 None:intergenic 30.0%
TTGGATTGTGAGAAATTCAT+GGG + chr1.3:4510138-4510157 MS.gene063260:CDS 30.0%
! AATTTTATGTGCTTGATCAC+AGG + chr1.3:4511649-4511668 MS.gene063260:intron 30.0%
! AGAGTATAGAAGCAAGTTTT+TGG + chr1.3:4507536-4507555 MS.gene063260:CDS 30.0%
! ATTACTGATGATGAACTCAA+AGG - chr1.3:4509402-4509421 None:intergenic 30.0%
! ATTTTATGTGCTTGATCACA+GGG + chr1.3:4511650-4511669 MS.gene063260:intron 30.0%
! GAGTATAGAAGCAAGTTTTT+GGG + chr1.3:4507537-4507556 MS.gene063260:CDS 30.0%
! TACTTGCTTGCATTTTTGAT+TGG + chr1.3:4510533-4510552 MS.gene063260:intron 30.0%
! TGGATTTCCTTATTTGCTTT+GGG + chr1.3:4508190-4508209 MS.gene063260:intron 30.0%
! TTTGAGTTCATCATCAGTAA+TGG + chr1.3:4509401-4509420 MS.gene063260:CDS 30.0%
!! CTAATTGTTGGCTACTATTT+TGG + chr1.3:4510762-4510781 MS.gene063260:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr1.3:4511340-4511359 None:intergenic 30.0%
!!! TTTTGCTTGTTGATTTGTCT+GGG - chr1.3:4507326-4507345 None:intergenic 30.0%
AAACGTAAAGACTTCAGTCA+TGG + chr1.3:4510600-4510619 MS.gene063260:intron 35.0%
AAAGTCCAAATGAACGCAAA+AGG - chr1.3:4510810-4510829 None:intergenic 35.0%
AACCGTAGGATGAAGAAATT+GGG + chr1.3:4507576-4507595 MS.gene063260:CDS 35.0%
AAGTCCAAATGAACGCAAAA+GGG - chr1.3:4510809-4510828 None:intergenic 35.0%
AATTGCCTGAATCTGTTGAT+TGG + chr1.3:4507640-4507659 MS.gene063260:CDS 35.0%
AATTTCTTCATCCTACGGTT+CGG - chr1.3:4507576-4507595 None:intergenic 35.0%
AGTCTTTACGTTTCAATGTC+CGG - chr1.3:4510593-4510612 None:intergenic 35.0%
ATTCCATTTGTCTCTTGTCA+GGG + chr1.3:4510034-4510053 MS.gene063260:intron 35.0%
CAAATGCAAACCAAGAATTC+TGG - chr1.3:4508700-4508719 None:intergenic 35.0%
CAATGAACAGACACTATCTA+CGG - chr1.3:4510689-4510708 None:intergenic 35.0%
CAGATATTGTTACACATGGA+TGG - chr1.3:4507962-4507981 None:intergenic 35.0%
CATACAATACACCAAGAAAC+TGG - chr1.3:4508379-4508398 None:intergenic 35.0%
CATCCATGTGTAACAATATC+TGG + chr1.3:4507960-4507979 MS.gene063260:intron 35.0%
CCTAAAATCACCAGAATTCT+TGG + chr1.3:4508687-4508706 MS.gene063260:intron 35.0%
CTTGATCCTGATAATTCATC+TGG + chr1.3:4508170-4508189 MS.gene063260:intron 35.0%
GGAAATCCAGATGAATTATC+AGG - chr1.3:4508179-4508198 None:intergenic 35.0%
GGCTATTGAAGATAATGTGA+AGG - chr1.3:4509936-4509955 None:intergenic 35.0%
GTAGTCATATAAGGTCTGTT+TGG + chr1.3:4508611-4508630 MS.gene063260:intron 35.0%
GTGGAAGATAGTTAATCAGT+AGG + chr1.3:4509534-4509553 MS.gene063260:intron 35.0%
GTTTAGGTGAGAAAGACAAA+AGG + chr1.3:4507412-4507431 MS.gene063260:CDS 35.0%
TATTCCATTTGTCTCTTGTC+AGG + chr1.3:4510033-4510052 MS.gene063260:intron 35.0%
TGGATTGTGAGAAATTCATG+GGG + chr1.3:4510139-4510158 MS.gene063260:CDS 35.0%
TGTGATACATCATACAACGA+AGG + chr1.3:4509350-4509369 MS.gene063260:CDS 35.0%
TGTTCCTGCTTATGATGAAT+TGG + chr1.3:4509662-4509681 MS.gene063260:CDS 35.0%
TGTTGCTGTATTTACGAGTA+TGG + chr1.3:4510364-4510383 MS.gene063260:CDS 35.0%
TTAATGATCTGAGAGTTAGG+AGG - chr1.3:4508446-4508465 None:intergenic 35.0%
TTCACTATCAGAACAAGAAC+TGG + chr1.3:4509322-4509341 MS.gene063260:CDS 35.0%
TTCCCAGATATTGTTACACA+TGG - chr1.3:4507966-4507985 None:intergenic 35.0%
TTGACTTTGCTTCACAAGAT+TGG + chr1.3:4509972-4509991 MS.gene063260:intron 35.0%
TTGGATACGGTACAGAAAAT+GGG + chr1.3:4510107-4510126 MS.gene063260:CDS 35.0%
TTTATCTGCTGAGACTGTTT+GGG + chr1.3:4511397-4511416 MS.gene063260:intron 35.0%
TTTCAATGAAGGGAGTTGTT+GGG + chr1.3:4509241-4509260 MS.gene063260:intron 35.0%
TTTGGATTTCGTTTGCAGTA+TGG + chr1.3:4508542-4508561 MS.gene063260:intron 35.0%
! CCAAGAATTCTGGTGATTTT+AGG - chr1.3:4508690-4508709 None:intergenic 35.0%
! CCTTAAAAGTTTTACGACGA+CGG + chr1.3:4508852-4508871 MS.gene063260:intron 35.0%
! CTGGATTTCCTTATTTGCTT+TGG + chr1.3:4508189-4508208 MS.gene063260:intron 35.0%
! GATAATCTGAAACCAGCTTA+TGG - chr1.3:4511004-4511023 None:intergenic 35.0%
! GTTTCTTGGTGTATTGTATG+TGG + chr1.3:4508379-4508398 MS.gene063260:intron 35.0%
! TTTTCAATGAAGGGAGTTGT+TGG + chr1.3:4509240-4509259 MS.gene063260:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr1.3:4511106-4511125 None:intergenic 35.0%
!! CAATGCTTTAAAAGCCAAAC+CGG + chr1.3:4510571-4510590 MS.gene063260:intron 35.0%
!! CCGTTTTAAACAGCTCAAAT+TGG + chr1.3:4510628-4510647 MS.gene063260:intron 35.0%
!! TACCATCAATAGCCTTGTAA+GGG - chr1.3:4509451-4509470 None:intergenic 35.0%
!!! CTTTTGCTTGTTGATTTGTC+TGG - chr1.3:4507327-4507346 None:intergenic 35.0%
!!! GACACTCATTTTGAAACAGA+GGG + chr1.3:4511345-4511364 MS.gene063260:intron 35.0%
AAAAATTATGGGACCCTTCC+CGG - chr1.3:4508334-4508353 None:intergenic 40.0%
AAAATCATCTGTCTGGCAAG+TGG + chr1.3:4509895-4509914 MS.gene063260:intron 40.0%
AACAGACACTATCTACGGTT+CGG - chr1.3:4510684-4510703 None:intergenic 40.0%
AAGGCCAATTCATCATAAGC+AGG - chr1.3:4509669-4509688 None:intergenic 40.0%
ACTATCAGAACAAGAACTGG+TGG + chr1.3:4509325-4509344 MS.gene063260:CDS 40.0%
ATTGTGAGAAATTCATGGGG+TGG + chr1.3:4510142-4510161 MS.gene063260:CDS 40.0%
ATTTACCGGTAGATGTGGAA+CGG + chr1.3:4510060-4510079 MS.gene063260:CDS 40.0%
CACCCAATTTCTTCATCCTA+CGG - chr1.3:4507581-4507600 None:intergenic 40.0%
CATAGTCAACACTTCTTCGT+TGG - chr1.3:4507352-4507371 None:intergenic 40.0%
CATATAGATTAGGGTTGACC+CGG + chr1.3:4507493-4507512 MS.gene063260:CDS 40.0%
CATCTTGTTCTTACCACCAA+AGG - chr1.3:4511735-4511754 None:intergenic 40.0%
GAACCGTAGGATGAAGAAAT+TGG + chr1.3:4507575-4507594 MS.gene063260:CDS 40.0%
GAAGAGTGGTTAGTGAAACA+TGG + chr1.3:4507375-4507394 MS.gene063260:CDS 40.0%
GAGTTCATCATCAGTAATGG+TGG + chr1.3:4509404-4509423 MS.gene063260:CDS 40.0%
GGAAAATCCTACAACGGTTT+AGG + chr1.3:4507396-4507415 MS.gene063260:CDS 40.0%
GGGTTCTGTCCATTCTTAAT+TGG - chr1.3:4510259-4510278 None:intergenic 40.0%
GTTGGATACGGTACAGAAAA+TGG + chr1.3:4510106-4510125 MS.gene063260:CDS 40.0%
GTTTATCTGCTGAGACTGTT+TGG + chr1.3:4511396-4511415 MS.gene063260:intron 40.0%
TAAAACTCCCCGCATAAGTA+GGG + chr1.3:4508307-4508326 MS.gene063260:intron 40.0%
TACCCTTACAAGGCTATTGA+TGG + chr1.3:4509446-4509465 MS.gene063260:CDS 40.0%
TCATACAACGAAGGATGCAA+TGG + chr1.3:4509359-4509378 MS.gene063260:CDS 40.0%
TCTTGTCAGGGTGTATTTAC+CGG + chr1.3:4510046-4510065 MS.gene063260:intron 40.0%
TGAAGAAATTGGGTGGTGTA+AGG + chr1.3:4507586-4507605 MS.gene063260:CDS 40.0%
TGAAGAGGATTACCCTTACA+AGG + chr1.3:4509436-4509455 MS.gene063260:CDS 40.0%
TGAATGACTTCACTCCCAAT+GGG - chr1.3:4511685-4511704 None:intergenic 40.0%
TGTAAGATATCCATCAGCTG+TGG - chr1.3:4508667-4508686 None:intergenic 40.0%
TTACGTTTCAATGTCCGGTT+TGG - chr1.3:4510588-4510607 None:intergenic 40.0%
TTCCTCCAATCAACAGATTC+AGG - chr1.3:4507648-4507667 None:intergenic 40.0%
TTGAATGACTTCACTCCCAA+TGG - chr1.3:4511686-4511705 None:intergenic 40.0%
TTTCTCACCTAAACCGTTGT+AGG - chr1.3:4507406-4507425 None:intergenic 40.0%
! ATGGAAGATCTTGCTTTGAG+TGG + chr1.3:4510383-4510402 MS.gene063260:CDS 40.0%
! ATGTCCCTTTTGCGTTCATT+TGG + chr1.3:4510802-4510821 MS.gene063260:intron 40.0%
! CCGTCGTCGTAAAACTTTTA+AGG - chr1.3:4508855-4508874 None:intergenic 40.0%
! TGAATCTGTTGATTGGAGGA+AGG + chr1.3:4507647-4507666 MS.gene063260:CDS 40.0%
! TGGAAGATCTTGCTTTGAGT+GGG + chr1.3:4510384-4510403 MS.gene063260:CDS 40.0%
! TGTTGACTATGTACGAAGAG+TGG + chr1.3:4507361-4507380 MS.gene063260:CDS 40.0%
!! CTACCATCAATAGCCTTGTA+AGG - chr1.3:4509452-4509471 None:intergenic 40.0%
!! TGATGAATTGGCCTTGCAAA+AGG + chr1.3:4509674-4509693 MS.gene063260:CDS 40.0%
!!! CGACACTCATTTTGAAACAG+AGG + chr1.3:4511344-4511363 MS.gene063260:intron 40.0%
!!! CGGTTTGGCTTTTAAAGCAT+TGG - chr1.3:4510573-4510592 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr1.3:4511102-4511121 None:intergenic 40.0%
AAATTCATGGGGTGGTAGCT+GGG + chr1.3:4510150-4510169 MS.gene063260:CDS 45.0%
ACACCCTGACAAGAGACAAA+TGG - chr1.3:4510040-4510059 None:intergenic 45.0%
ACAGGGCAAGAATAACCCAT+TGG + chr1.3:4511667-4511686 MS.gene063260:intron 45.0%
ACTGGTTGAACTGTCTTGTC+TGG + chr1.3:4510713-4510732 MS.gene063260:intron 45.0%
AGGAGATGATCGACATGTCT+AGG - chr1.3:4507290-4507309 None:intergenic 45.0%
AGTATCATCACCACAGCTGA+TGG + chr1.3:4508654-4508673 MS.gene063260:intron 45.0%
ATGGTAGATGTGACCAGAAC+AGG + chr1.3:4509465-4509484 MS.gene063260:CDS 45.0%
CACAGACAGGATACTCATGA+GGG - chr1.3:4510462-4510481 None:intergenic 45.0%
CAGGGCAAGAATAACCCATT+GGG + chr1.3:4511668-4511687 MS.gene063260:intron 45.0%
CCAAGTAACTAACCCTGTTC+TGG - chr1.3:4509481-4509500 None:intergenic 45.0%
CGCAAAAGGGACATATCAAC+AGG - chr1.3:4510796-4510815 None:intergenic 45.0%
CGTAGGATGAAGAAATTGGG+TGG + chr1.3:4507579-4507598 MS.gene063260:CDS 45.0%
CTAAAACTCCCCGCATAAGT+AGG + chr1.3:4508306-4508325 MS.gene063260:intron 45.0%
CTCAGTTAATCATGGGGTGA+AGG - chr1.3:4509128-4509147 None:intergenic 45.0%
GGAGATGATCGACATGTCTA+GGG - chr1.3:4507289-4507308 None:intergenic 45.0%
GGCTAGTGAAACTGTGAAAG+TGG - chr1.3:4507268-4507287 None:intergenic 45.0%
GGTGTATTTACCGGTAGATG+TGG + chr1.3:4510055-4510074 MS.gene063260:CDS 45.0%
GTCAAAGACCAAGCAAGTTG+TGG + chr1.3:4507687-4507706 MS.gene063260:CDS 45.0%
GTGTCTGTTCATTGCTCAAC+TGG + chr1.3:4510695-4510714 MS.gene063260:intron 45.0%
TACAACGAAGGATGCAATGG+TGG + chr1.3:4509362-4509381 MS.gene063260:CDS 45.0%
TAGTAGCTGTCACAGACAGA+TGG - chr1.3:4510322-4510341 None:intergenic 45.0%
TCACAGACAGGATACTCATG+AGG - chr1.3:4510463-4510482 None:intergenic 45.0%
TCGTGCTGGACTTTGTCTTA+AGG + chr1.3:4510486-4510505 MS.gene063260:CDS 45.0%
TGAGACTGTTTGGGAGAACA+TGG + chr1.3:4511406-4511425 MS.gene063260:intron 45.0%
TGGTAGATGTGACCAGAACA+GGG + chr1.3:4509466-4509485 MS.gene063260:CDS 45.0%
TTGATAGGTGAAGGTGGTGA+TGG - chr1.3:4510295-4510314 None:intergenic 45.0%
! AATCTAGCTTCAAGCAGAGC+AGG + chr1.3:4510202-4510221 MS.gene063260:CDS 45.0%
! AGTGCTTACCACAACTTGCT+TGG - chr1.3:4507698-4507717 None:intergenic 45.0%
! GGAAGATCTTGCTTTGAGTG+GGG + chr1.3:4510385-4510404 MS.gene063260:CDS 45.0%
! GGGAAGGGTCCCATAATTTT+TGG + chr1.3:4508333-4508352 MS.gene063260:intron 45.0%
! GTTTGCAACAGCCTTTTGCA+AGG - chr1.3:4509688-4509707 None:intergenic 45.0%
! TCTGTTGATTGGAGGAAGGA+AGG + chr1.3:4507651-4507670 MS.gene063260:CDS 45.0%
! TGCCTGAATCTGTTGATTGG+AGG + chr1.3:4507643-4507662 MS.gene063260:CDS 45.0%
!! AGGATGCAATGGTGGACTTA+TGG + chr1.3:4509370-4509389 MS.gene063260:CDS 45.0%
!! CCAGAACAGGGTTAGTTACT+TGG + chr1.3:4509478-4509497 MS.gene063260:intron 45.0%
!! GCTTGTTGATTTGTCTGGGT+GGG - chr1.3:4507322-4507341 None:intergenic 45.0%
!! TGCTTGTTGATTTGTCTGGG+TGG - chr1.3:4507323-4507342 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr1.3:4511103-4511122 None:intergenic 45.0%
!!! TAATTTTAAAATTAAATACA+AGG + chr1.3:4508049-4508068 MS.gene063260:intron 5.0%
AATCGTTATGCGCCACGTGT+CGG + chr1.3:4507612-4507631 MS.gene063260:CDS 50.0%
AATTCATGGGGTGGTAGCTG+GGG + chr1.3:4510151-4510170 MS.gene063260:CDS 50.0%
AGCTACTACAGCTGTGCTGA+AGG + chr1.3:4510334-4510353 MS.gene063260:CDS 50.0%
ATCCAACAGCTGCAACACCA+TGG - chr1.3:4510093-4510112 None:intergenic 50.0%
CAAAGATCGATCCGAACCGT+AGG + chr1.3:4507562-4507581 MS.gene063260:CDS 50.0%
CAGCAAGTAGCAGACTCAAG+AGG - chr1.3:4510418-4510437 None:intergenic 50.0%
CGCAGTCTTACCCAGTTTCT+TGG + chr1.3:4508365-4508384 MS.gene063260:intron 50.0%
CGTTAGTTAGATCCGCGAAC+CGG - chr1.3:4507515-4507534 None:intergenic 50.0%
GAAATTCATGGGGTGGTAGC+TGG + chr1.3:4510149-4510168 MS.gene063260:CDS 50.0%
GGCAATTTATCACCGACACG+TGG - chr1.3:4507627-4507646 None:intergenic 50.0%
GTTAGTTAGATCCGCGAACC+GGG - chr1.3:4507514-4507533 None:intergenic 50.0%
TAGCTGTCACAGACAGATGG+TGG - chr1.3:4510319-4510338 None:intergenic 50.0%
TCAAGCAGAGCAGGAAAGTG+TGG + chr1.3:4510211-4510230 MS.gene063260:CDS 50.0%
TCAGCAATCGCAGCTGTTGA+AGG + chr1.3:4509269-4509288 MS.gene063260:CDS 50.0%
! CAGACAGATGGTGGCTTGAT+AGG - chr1.3:4510310-4510329 None:intergenic 50.0%
! GATGGTGGCTTGATAGGTGA+AGG - chr1.3:4510304-4510323 None:intergenic 50.0%
! GGTGTTGCAGCTGTTGGATA+CGG + chr1.3:4510094-4510113 MS.gene063260:CDS 50.0%
! TAGTGCCGTTCCACATCTAC+CGG - chr1.3:4510068-4510087 None:intergenic 50.0%
!! AGGAAGGAAGGTGCTGTTGT+TGG + chr1.3:4507663-4507682 MS.gene063260:CDS 50.0%
!! TGGTGGCATTGACTCTGAAG+AGG + chr1.3:4509421-4509440 MS.gene063260:CDS 50.0%
ACCGCCTCCTTCAACAGCAA+CGG - chr1.3:4509721-4509740 None:intergenic 55.0%
CCTTCAACAGCAACGGCGAT+AGG - chr1.3:4509714-4509733 None:intergenic 55.0%
CTTCCCGGACCCTACTTATG+CGG - chr1.3:4508319-4508338 None:intergenic 55.0%
GCATAAGTAGGGTCCGGGAA+GGG + chr1.3:4508318-4508337 MS.gene063260:intron 55.0%
GGTGGCTTGATAGGTGAAGG+TGG - chr1.3:4510301-4510320 None:intergenic 55.0%
TGCTGTTGAAGGAGGCGGTA+GGG + chr1.3:4509722-4509741 MS.gene063260:CDS 55.0%
TGTGGAACGGCACTAGACCA+TGG + chr1.3:4510073-4510092 MS.gene063260:CDS 55.0%
TTACCACCAAAGGCCCAGTG+AGG - chr1.3:4511725-4511744 None:intergenic 55.0%
TTCCCGGACCCTACTTATGC+GGG - chr1.3:4508318-4508337 None:intergenic 55.0%
! ATCGCCGTTGCTGTTGAAGG+AGG + chr1.3:4509714-4509733 MS.gene063260:CDS 55.0%
! ATTAGGGTTGACCCGGTTCG+CGG + chr1.3:4507500-4507519 MS.gene063260:CDS 55.0%
! CCTATCGCCGTTGCTGTTGA+AGG + chr1.3:4509711-4509730 MS.gene063260:CDS 55.0%
! TTGCTGTTGAAGGAGGCGGT+AGG + chr1.3:4509721-4509740 MS.gene063260:CDS 55.0%
!! GACCATGGTGTTGCAGCTGT+TGG + chr1.3:4510088-4510107 MS.gene063260:CDS 55.0%
!! GTCTGGGTGGGTTTTGTCGT+AGG - chr1.3:4507310-4507329 None:intergenic 55.0%
!! GTGAAGGTGGTGATGGTCCA+GGG - chr1.3:4510288-4510307 None:intergenic 55.0%
!! GTGGTGATGGTCCAGGGTTA+GGG - chr1.3:4510282-4510301 None:intergenic 55.0%
!! TGGTGATGGTCCAGGGTTAG+GGG - chr1.3:4510281-4510300 None:intergenic 55.0%
AAGCCTCACTGGGCCTTTGG+TGG + chr1.3:4511719-4511738 MS.gene063260:CDS 60.0%
ACCAAAGGCCCAGTGAGGCT+TGG - chr1.3:4511720-4511739 None:intergenic 60.0%
CAACAGCAACGGCGATAGGC+TGG - chr1.3:4509710-4509729 None:intergenic 60.0%
CACTCCTGCCAAGCCTCACT+GGG + chr1.3:4511709-4511728 MS.gene063260:CDS 60.0%
CCAGCACGAGTGTCACAGAC+AGG - chr1.3:4510475-4510494 None:intergenic 60.0%
CCTGTCTGTGACACTCGTGC+TGG + chr1.3:4510472-4510491 MS.gene063260:CDS 60.0%
CGCATAAGTAGGGTCCGGGA+AGG + chr1.3:4508317-4508336 MS.gene063260:intron 60.0%
CTCCCCGCATAAGTAGGGTC+CGG + chr1.3:4508312-4508331 MS.gene063260:intron 60.0%
GGTGGTAGCTGGGGTGAACA+AGG + chr1.3:4510160-4510179 MS.gene063260:CDS 60.0%
GTGATGGTCCAGGGTTAGGG+GGG - chr1.3:4510279-4510298 None:intergenic 60.0%
TCCCCGCATAAGTAGGGTCC+GGG + chr1.3:4508313-4508332 MS.gene063260:intron 60.0%
TCCCGGACCCTACTTATGCG+GGG - chr1.3:4508317-4508336 None:intergenic 60.0%
! GCCGTTGCTGTTGAAGGAGG+CGG + chr1.3:4509717-4509736 MS.gene063260:CDS 60.0%
! GGTGATGGTCCAGGGTTAGG+GGG - chr1.3:4510280-4510299 None:intergenic 60.0%
!! GGTGAAGGTGGTGATGGTCC+AGG - chr1.3:4510289-4510308 None:intergenic 60.0%
!! GGTGGTGATGGTCCAGGGTT+AGG - chr1.3:4510283-4510302 None:intergenic 60.0%
!! TGCGGGGAGTTTTAGTGCGC+AGG - chr1.3:4508301-4508320 None:intergenic 60.0%
AAGGCCCAGTGAGGCTTGGC+AGG - chr1.3:4511716-4511735 None:intergenic 65.0%
GCACTCCTGCCAAGCCTCAC+TGG + chr1.3:4511708-4511727 MS.gene063260:CDS 65.0%
GCCAAGCCTCACTGGGCCTT+TGG + chr1.3:4511716-4511735 MS.gene063260:CDS 65.0%
GGACAGAACCCCCCTAACCC+TGG + chr1.3:4510268-4510287 MS.gene063260:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 4507225 4511766 4507225 ID=MS.gene063260
chr1.3 mRNA 4507225 4511766 4507225 ID=MS.gene063260.t1;Parent=MS.gene063260
chr1.3 exon 4507225 4507708 4507225 ID=MS.gene063260.t1.exon1;Parent=MS.gene063260.t1
chr1.3 CDS 4507225 4507708 4507225 ID=cds.MS.gene063260.t1;Parent=MS.gene063260.t1
chr1.3 exon 4509252 4509487 4509252 ID=MS.gene063260.t1.exon2;Parent=MS.gene063260.t1
chr1.3 CDS 4509252 4509487 4509252 ID=cds.MS.gene063260.t1;Parent=MS.gene063260.t1
chr1.3 exon 4509624 4509764 4509624 ID=MS.gene063260.t1.exon3;Parent=MS.gene063260.t1
chr1.3 CDS 4509624 4509764 4509624 ID=cds.MS.gene063260.t1;Parent=MS.gene063260.t1
chr1.3 exon 4510055 4510507 4510055 ID=MS.gene063260.t1.exon4;Parent=MS.gene063260.t1
chr1.3 CDS 4510055 4510507 4510055 ID=cds.MS.gene063260.t1;Parent=MS.gene063260.t1
chr1.3 exon 4511671 4511766 4511671 ID=MS.gene063260.t1.exon5;Parent=MS.gene063260.t1
chr1.3 CDS 4511671 4511766 4511671 ID=cds.MS.gene063260.t1;Parent=MS.gene063260.t1
Gene Sequence

>MS.gene063260

ATGGATTCAGCGATGAAACTCATGATCGTTCTCATCTTAGCCACTTTCACAGTTTCACTAGCCCTAGACATGTCGATCATCTCCTACGACAAAACCCACCCAGACAAATCAACAAGCAAAAGAACCAACGAAGAAGTGTTGACTATGTACGAAGAGTGGTTAGTGAAACATGGAAAATCCTACAACGGTTTAGGTGAGAAAGACAAAAGGTTCGAGATCTTCAAAGACAACCTTAAATTCATTGATGAACATAACGGTTTGAATTCGACATATAGATTAGGGTTGACCCGGTTCGCGGATCTAACTAACGAAGAGTATAGAAGCAAGTTTTTGGGAACAAAGATCGATCCGAACCGTAGGATGAAGAAATTGGGTGGTGTAAGGAGCAATCGTTATGCGCCACGTGTCGGTGATAAATTGCCTGAATCTGTTGATTGGAGGAAGGAAGGTGCTGTTGTTGGAGTCAAAGACCAAGCAAGTTGTGGTAAGCACTTCGATCACTTATCTTAAACACTTTCGATGTTTTTTACTTTTTTTTTCTTTTCTTTTAAATAAAAAATAAATAAAGCTAAATTCTTTTCTTTGTTTCTAATCATTCTTTGATTTTTTTCTCAAAAAAAAAATCATTCTTTGATTTTAAATTAATAATTAATAATATCTACTGTCTGTTACTATTGACTTATTGTGAATATTATTTTGTTTTTAAATTTTATGATCTTATCTTTGATTTACTGCCATCCATGTGTAACAATATCTGGGAAAAAATATTTCAGTGTTAATGATGTACTTTAATTTGTGGCTGAAAAATATTGATTTTATTTATTTAATTTTAAAATTAAATACAAGGCTTTTAATTTTAGATTTTTCTTATTTTCTTGGATATGTTATTAGGATTTCATGATTCTTATTTGTGATCTGACTATGATATGAATCAAAGTATCAACTCTTGATCCTGATAATTCATCTGGATTTCCTTATTTGCTTTGGGATTTCATGTTTTATAGTGAAATTTACAAAAATAAATAAATAAATTGAAGAAGAAACTTACAAAATTTTAATTCATAAAAGGGCAACCTGCGCACTAAAACTCCCCGCATAAGTAGGGTCCGGGAAGGGTCCCATAATTTTTGGTGTATTGTACGCAGTCTTACCCAGTTTCTTGGTGTATTGTATGTGGCCTTACAAAATTTTAAATCATACACACTGATAATCAATTGTCCTCCTAACTCTCAGATCATTAAAATTGTTTGACTTTAATTATACATAGACCATACGATTGATTTTGATTTGCTGATAGTGTTAAACTAAAAACAATTCTTTGGATTTCGTTTGCAGTATGGATTCCTTTTTTTTTTTGTATTACTTAATACTTAAGTTCTTTGTTTTGTAGTCATATAAGGTCTGTTTGGAAAGTAAATACAGTATAAAGAGTATCATCACCACAGCTGATGGATATCTTACACCTAAAATCACCAGAATTCTTGGTTTGCATTTGTTTGTTCAATATGGGTTTAATTGATATGCACTTTTACCTATCAATCAATCATAACATGGCTCGAAATATACGCCTTTAATCATGTCTACCTTAAAAGTCATACGAAATATATATTTTGTGACTGTTTAACTACCTTAAAAGTTTTACGACGACGGTGCATCAAAATTAATCTCTTTGAATATTCTCAAAATTGTTAAGAGAACACGTAGATAATCATGTAACATGGTTTGTGCTTGTCAATCAGACTCAGATTCTTCAGCTCCCAAGAGTACTCAATATATCAATCATTGGTGTAATAATATGGCTCTATCTTACCATAATATAATGCTTTTTTGTTTGTCAATAAATAATGAATATCCTTTATTTCTTGAGCAGAAGTATTAATCACTCTTCTAATGAAAAAGTCCTTCACCCCATGATTAACTGAGTTTGATTAAGGAACATGATAGTTTTTGGCTTCTTTTAATTGTATTCATACAATTTAATTTGTCCACAAAAAATTGCTAATATTATCTTCTTTTTTTCAATGAAGGGAGTTGTTGGGCATTCTCAGCAATCGCAGCTGTTGAAGGAATAAATAAGATTGTGACAGGAGATCTAATTTCACTATCAGAACAAGAACTGGTGGACTGTGATACATCATACAACGAAGGATGCAATGGTGGACTTATGGATTACGCCTTTGAGTTCATCATCAGTAATGGTGGCATTGACTCTGAAGAGGATTACCCTTACAAGGCTATTGATGGTAGATGTGACCAGAACAGGGTTAGTTACTTGGTCATTGATTTTTTAATGACAATAGTAAATGTTTGTGGAAGATAGTTAATCAGTAGGACTAGTTAGTTAACACTCTAATTCTTTCATTGGTTTTAAACTGTTTGGTTATTCTCTTTGTGCGCAGAAAAATGCTAAAGTTGTTACAATTGATGACTATGAAGATGTTCCTGCTTATGATGAATTGGCCTTGCAAAAGGCTGTTGCAAACCAGCCTATCGCCGTTGCTGTTGAAGGAGGCGGTAGGGAATTCCAGTTATATGAATATGTAAGTTTCTAAATTAATTCTACTATGAAACTAGGAATTTTATACTGTGTTGCATTGGGATAACGTCATAATCAATACTGCAAACGTGTATAAATTGTTATAACTATCCTTCACATATTGATTTTGAATAAAAATCATCTGTCTGGCAAGTGGTTTTGCTATAACTATCCTTCACATTATCTTCAATAGCCTGTTAATTTATTTTTTTTGACTTTGCTTCACAAGATTGGTACATACTGTTATATTTCATGAACTTTCTGTTTGAATGTATTCCATTTGTCTCTTGTCAGGGTGTATTTACCGGTAGATGTGGAACGGCACTAGACCATGGTGTTGCAGCTGTTGGATACGGTACAGAAAATGGGAAAGATTATTGGATTGTGAGAAATTCATGGGGTGGTAGCTGGGGTGAACAAGGTTACATCAGACTCGAACGTAATCTAGCTTCAAGCAGAGCAGGAAAGTGTGGAATTGCGATCGAGCCATCTTATCCAATTAAGAATGGACAGAACCCCCCTAACCCTGGACCATCACCACCTTCACCTATCAAGCCACCATCTGTCTGTGACAGCTACTACAGCTGTGCTGAAGGCTCTACTTGTTGCTGTATTTACGAGTATGGAAGATCTTGCTTTGAGTGGGGATGCTGTCCTCTTGAGTCTGCTACTTGCTGTGATGATCACTACAGTTGCTGCCCTCATGAGTATCCTGTCTGTGACACTCGTGCTGGACTTTGTCTTAAGGTATGTCCAAGTCAACCTTATCTTTTACTTGCTTGCATTTTTGATTGGATTTTCACTTGGAACCAATGCTTTAAAAGCCAAACCGGACATTGAAACGTAAAGACTTCAGTCATGGTTCAACCGTTTTAAACAGCTCAAATTGGAATGAAACCACGATCAAACAGTTTAAATAACCGAACCGTAGATAGTGTCTGTTCATTGCTCAACTGGTTGAACTGTCTTGTCTGGTTCCATTTTTAAAACATTACTTGGAACTAATTGTTGGCTACTATTTTGGATTTTTTTCCTGTTGATATGTCCCTTTTGCGTTCATTTGGACTTTTTGAATTATATTTTATGTTTTCAGTTAAAATATGATTAGTTTTAGCAGAAAAAACAATTTCTCAATGTTAAGTGTTTGTAAGTGAGTTAAATGAGATAGTTTTCTTAAAAAATTGAGATGCATTATGCATATTATGTTTAGAAGAGCTTATAAAGATAGCTTATAATATATCCATAAGCTGGTTTCAGATTATCGTCATAAGTTTTATGTGATAGCCTATAAATTTTTTATAAAAAGGCTTATGCACTATGCAGAGTTAAACTAATACTCCCTCCGTTTCAAAATGAGTGTCGCTTTAGCCAAAAAAATTTGTTTCAAAATGAATGTCACTTTCAGTTTCCAATGCAATAATAACTTTTTCTTTTCAATTGTACCCTCCAATTAATGCTTTGCACACTACTTCCAAAGTACTACTTTTAAAACTAACCAATAGTTAATAAGGATAATTTGGTAAAATAATCATTTTCTTTCTTTTAATCATTGCATTTCTTAATATGTGTGTAAACACCTAAAACGACACTCATTTTGAAACAGAGGGAGTAAGCTCTAAGTATTATATTATTTGAGTTTATCTGCTGAGACTGTTTGGGAGAACATGGAAAAATAGCCTATAACATGTCTATTATTCGTTTTCTTAATATTTTCATAATTCAGAATAACTTAAGAATACAACTTATAGCTTGAATAAAAACAATTCGACTTTATCCAAACAAAGTCAAATTCTTATGGGAAAAGAACTTATAGAACAAGCTCTTAATTTAGTTGTTTTATCGGGAATTATCCAAATTTGTATGGATTGTTTACACTTTTGCTTATCCAAATTTTATGTGCTTGATCACAGGGCAAGAATAACCCATTGGGAGTGAAGTCATTCAAACGCACTCCTGCCAAGCCTCACTGGGCCTTTGGTGGTAAGAACAAGATGAGCAATGCTTAA
Protein sequence

>MS.gene063260.t1

MDSAMKLMIVLILATFTVSLALDMSIISYDKTHPDKSTSKRTNEEVLTMYEEWLVKHGKSYNGLGEKDKRFEIFKDNLKFIDEHNGLNSTYRLGLTRFADLTNEEYRSKFLGTKIDPNRRMKKLGGVRSNRYAPRVGDKLPESVDWRKEGAVVGVKDQASCGSCWAFSAIAAVEGINKIVTGDLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIISNGGIDSEEDYPYKAIDGRCDQNRKNAKVVTIDDYEDVPAYDELALQKAVANQPIAVAVEGGGREFQLYEYGVFTGRCGTALDHGVAAVGYGTENGKDYWIVRNSWGGSWGEQGYIRLERNLASSRAGKCGIAIEPSYPIKNGQNPPNPGPSPPSPIKPPSVCDSYYSCAEGSTCCCIYEYGRSCFEWGCCPLESATCCDDHYSCCPHEYPVCDTRAGLCLKGKNNPLGVKSFKRTPAKPHWAFGGKNKMSNA