Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69449.t1 | KEH36214.1 | 92.8 | 417 | 28 | 1 | 1 | 415 | 1 | 417 | 4.70E-221 | 776.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69449.t1 | Q9FMH8 | 48.6 | 399 | 189 | 4 | 26 | 414 | 42 | 434 | 1.3e-102 | 374.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69449.t1 | A0A072V2E9 | 92.8 | 417 | 28 | 1 | 1 | 415 | 1 | 417 | 3.4e-221 | 776.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene063261 | MS.gene69449 | PPI |
MS.gene00463 | MS.gene69449 | PPI |
MS.gene063262 | MS.gene69449 | PPI |
MS.gene24440 | MS.gene69449 | PPI |
MS.gene38563 | MS.gene69449 | PPI |
MS.gene00462 | MS.gene69449 | PPI |
MS.gene012942 | MS.gene69449 | PPI |
MS.gene69449 | MS.gene063260 | PPI |
MS.gene044078 | MS.gene69449 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69449.t1 | MTR_3g112430 | 96.163 | 417 | 14 | 1 | 1 | 415 | 1 | 417 | 0.0 | 834 |
MS.gene69449.t1 | MTR_1g107550 | 51.463 | 410 | 189 | 4 | 12 | 413 | 28 | 435 | 6.87e-142 | 414 |
MS.gene69449.t1 | MTR_1g018840 | 49.176 | 425 | 195 | 7 | 12 | 417 | 23 | 445 | 2.91e-135 | 396 |
MS.gene69449.t1 | MTR_1g018840 | 49.173 | 423 | 194 | 7 | 12 | 415 | 23 | 443 | 1.42e-134 | 395 |
MS.gene69449.t1 | MTR_3g102220 | 47.032 | 438 | 204 | 8 | 5 | 416 | 9 | 444 | 5.07e-132 | 388 |
MS.gene69449.t1 | MTR_2g016180 | 48.157 | 434 | 192 | 8 | 9 | 416 | 19 | 445 | 3.03e-124 | 369 |
MS.gene69449.t1 | MTR_2g016270 | 47.806 | 433 | 180 | 8 | 9 | 416 | 19 | 430 | 1.15e-121 | 362 |
MS.gene69449.t1 | MTR_4g094918 | 48.397 | 343 | 169 | 5 | 9 | 346 | 9 | 348 | 2.80e-116 | 344 |
MS.gene69449.t1 | MTR_3g116080 | 51.335 | 337 | 151 | 5 | 11 | 340 | 18 | 348 | 1.27e-112 | 334 |
MS.gene69449.t1 | MTR_2g075830 | 48.083 | 339 | 155 | 6 | 12 | 339 | 12 | 340 | 2.08e-103 | 310 |
MS.gene69449.t1 | MTR_4g047610 | 49.844 | 321 | 142 | 6 | 28 | 339 | 32 | 342 | 1.38e-102 | 308 |
MS.gene69449.t1 | MTR_3g075390 | 46.591 | 352 | 174 | 4 | 10 | 349 | 5 | 354 | 1.72e-102 | 309 |
MS.gene69449.t1 | MTR_5g022560 | 47.661 | 342 | 155 | 7 | 12 | 339 | 12 | 343 | 2.44e-102 | 308 |
MS.gene69449.t1 | MTR_4g079770 | 48.105 | 343 | 152 | 8 | 12 | 339 | 13 | 344 | 7.23e-102 | 307 |
MS.gene69449.t1 | MTR_4g079440 | 49.351 | 308 | 147 | 5 | 32 | 338 | 44 | 343 | 3.48e-101 | 305 |
MS.gene69449.t1 | MTR_2g090890 | 47.321 | 336 | 162 | 5 | 11 | 340 | 11 | 337 | 2.04e-100 | 303 |
MS.gene69449.t1 | MTR_4g079470 | 50.000 | 314 | 137 | 6 | 35 | 339 | 42 | 344 | 2.70e-100 | 303 |
MS.gene69449.t1 | MTR_4g080700 | 50.327 | 306 | 144 | 3 | 35 | 339 | 41 | 339 | 2.89e-100 | 302 |
MS.gene69449.t1 | MTR_4g079800 | 49.045 | 314 | 140 | 6 | 35 | 339 | 42 | 344 | 1.61e-99 | 301 |
MS.gene69449.t1 | MTR_4g104370 | 47.384 | 344 | 170 | 6 | 12 | 347 | 11 | 351 | 4.69e-99 | 300 |
MS.gene69449.t1 | MTR_4g080730 | 49.673 | 306 | 146 | 3 | 35 | 339 | 41 | 339 | 9.56e-99 | 298 |
MS.gene69449.t1 | MTR_4g107930 | 46.491 | 342 | 159 | 7 | 12 | 339 | 13 | 344 | 3.74e-98 | 297 |
MS.gene69449.t1 | MTR_2g083930 | 45.317 | 331 | 178 | 3 | 11 | 338 | 12 | 342 | 1.20e-96 | 293 |
MS.gene69449.t1 | MTR_4g080360 | 46.471 | 340 | 171 | 5 | 6 | 339 | 7 | 341 | 1.62e-96 | 293 |
MS.gene69449.t1 | MTR_7g079230 | 43.695 | 341 | 162 | 7 | 13 | 338 | 9 | 334 | 1.78e-85 | 265 |
MS.gene69449.t1 | MTR_7g078600 | 46.349 | 315 | 145 | 8 | 31 | 338 | 39 | 336 | 2.40e-85 | 264 |
MS.gene69449.t1 | MTR_4g065077 | 41.783 | 359 | 176 | 10 | 7 | 341 | 9 | 358 | 1.38e-79 | 250 |
MS.gene69449.t1 | MTR_2g015850 | 45.860 | 314 | 160 | 7 | 26 | 338 | 58 | 362 | 5.10e-77 | 244 |
MS.gene69449.t1 | MTR_2g015920 | 40.597 | 335 | 181 | 8 | 21 | 346 | 40 | 365 | 5.48e-76 | 241 |
MS.gene69449.t1 | MTR_2g067900 | 42.988 | 328 | 169 | 10 | 21 | 337 | 3 | 323 | 1.19e-73 | 234 |
MS.gene69449.t1 | MTR_8g086470 | 40.449 | 356 | 169 | 9 | 7 | 341 | 25 | 358 | 6.36e-73 | 233 |
MS.gene69449.t1 | MTR_2g015930 | 41.390 | 331 | 173 | 9 | 21 | 340 | 39 | 359 | 4.92e-72 | 231 |
MS.gene69449.t1 | MTR_4g125300 | 40.061 | 327 | 173 | 10 | 20 | 339 | 38 | 348 | 1.90e-67 | 218 |
MS.gene69449.t1 | MTR_2g064475 | 35.196 | 358 | 184 | 14 | 21 | 339 | 3 | 351 | 9.77e-62 | 204 |
MS.gene69449.t1 | MTR_4g071060 | 38.318 | 321 | 165 | 11 | 34 | 336 | 48 | 353 | 2.42e-60 | 200 |
MS.gene69449.t1 | MTR_2g067560 | 36.812 | 345 | 186 | 11 | 23 | 343 | 5 | 341 | 5.94e-58 | 204 |
MS.gene69449.t1 | MTR_2g016380 | 50.711 | 211 | 87 | 3 | 222 | 416 | 16 | 225 | 2.96e-57 | 189 |
MS.gene69449.t1 | MTR_1g023210 | 36.449 | 321 | 172 | 10 | 34 | 336 | 51 | 357 | 3.21e-57 | 192 |
MS.gene69449.t1 | MTR_2g066980 | 36.170 | 329 | 157 | 11 | 27 | 339 | 27 | 318 | 4.35e-55 | 185 |
MS.gene69449.t1 | MTR_1g094135 | 35.588 | 340 | 176 | 14 | 30 | 345 | 52 | 372 | 7.07e-54 | 184 |
MS.gene69449.t1 | MTR_1g023810 | 43.119 | 218 | 117 | 5 | 123 | 337 | 48 | 261 | 8.10e-51 | 172 |
MS.gene69449.t1 | MTR_4g072790 | 35.922 | 309 | 153 | 11 | 34 | 336 | 48 | 317 | 8.93e-47 | 164 |
MS.gene69449.t1 | MTR_4g073660 | 36.859 | 312 | 150 | 12 | 34 | 336 | 47 | 320 | 1.32e-45 | 160 |
MS.gene69449.t1 | MTR_4g072340 | 36.859 | 312 | 150 | 12 | 34 | 336 | 48 | 321 | 2.05e-45 | 160 |
MS.gene69449.t1 | MTR_7g078630 | 36.879 | 282 | 132 | 7 | 26 | 295 | 698 | 945 | 2.90e-42 | 159 |
MS.gene69449.t1 | MTR_7g078580 | 59.184 | 98 | 38 | 2 | 242 | 338 | 4 | 100 | 4.72e-29 | 110 |
MS.gene69449.t1 | MTR_2g015840 | 48.624 | 109 | 54 | 2 | 232 | 339 | 164 | 271 | 1.09e-27 | 111 |
MS.gene69449.t1 | MTR_2g015840 | 37.600 | 125 | 76 | 1 | 35 | 159 | 34 | 156 | 3.02e-22 | 96.3 |
MS.gene69449.t1 | MTR_1g025450 | 38.150 | 173 | 85 | 5 | 123 | 292 | 54 | 207 | 1.75e-27 | 115 |
MS.gene69449.t1 | MTR_7g079130 | 58.889 | 90 | 36 | 1 | 250 | 338 | 7 | 96 | 1.29e-26 | 102 |
MS.gene69449.t1 | MTR_7g078310 | 31.553 | 206 | 120 | 5 | 17 | 219 | 63 | 250 | 2.97e-21 | 93.2 |
MS.gene69449.t1 | MTR_7g086240 | 53.333 | 75 | 34 | 1 | 30 | 104 | 30 | 103 | 5.76e-20 | 85.1 |
MS.gene69449.t1 | MTR_3g029560 | 32.227 | 211 | 115 | 7 | 135 | 339 | 49 | 237 | 1.67e-18 | 84.7 |
MS.gene69449.t1 | MTR_2g047960 | 43.529 | 85 | 48 | 0 | 134 | 218 | 8 | 92 | 6.24e-17 | 76.3 |
MS.gene69449.t1 | MTR_7g079260 | 47.500 | 80 | 25 | 2 | 266 | 344 | 7 | 70 | 7.78e-15 | 70.9 |
MS.gene69449.t1 | MTR_8g087510 | 36.923 | 130 | 76 | 5 | 165 | 292 | 23 | 148 | 1.08e-14 | 72.4 |
MS.gene69449.t1 | MTR_3g082370 | 26.977 | 215 | 119 | 8 | 126 | 315 | 2 | 203 | 7.74e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69449.t1 | AT1G09850 | 69.565 | 391 | 109 | 2 | 28 | 415 | 26 | 409 | 0.0 | 566 |
MS.gene69449.t1 | AT3G19390 | 50.360 | 417 | 196 | 5 | 4 | 413 | 8 | 420 | 3.92e-140 | 408 |
MS.gene69449.t1 | AT5G43060 | 49.123 | 399 | 187 | 4 | 26 | 414 | 42 | 434 | 1.83e-134 | 394 |
MS.gene69449.t1 | AT1G47128 | 45.727 | 433 | 207 | 5 | 5 | 414 | 6 | 433 | 2.81e-130 | 384 |
MS.gene69449.t1 | AT3G19400 | 52.351 | 319 | 133 | 6 | 33 | 342 | 43 | 351 | 1.22e-114 | 340 |
MS.gene69449.t1 | AT4G35350 | 53.871 | 310 | 139 | 2 | 32 | 341 | 49 | 354 | 1.46e-114 | 340 |
MS.gene69449.t1 | AT1G20850 | 53.548 | 310 | 141 | 2 | 32 | 341 | 49 | 355 | 3.85e-114 | 338 |
MS.gene69449.t1 | AT4G36880 | 52.308 | 325 | 146 | 5 | 29 | 345 | 44 | 367 | 5.02e-114 | 339 |
MS.gene69449.t1 | AT4G23520 | 50.000 | 350 | 155 | 9 | 7 | 342 | 9 | 352 | 2.72e-108 | 323 |
MS.gene69449.t1 | AT3G48340 | 47.458 | 354 | 170 | 4 | 9 | 348 | 1 | 352 | 4.10e-104 | 313 |
MS.gene69449.t1 | AT3G48350 | 47.159 | 352 | 176 | 6 | 1 | 345 | 1 | 349 | 5.35e-103 | 310 |
MS.gene69449.t1 | AT4G11320 | 48.750 | 320 | 150 | 6 | 29 | 342 | 51 | 362 | 1.90e-101 | 306 |
MS.gene69449.t1 | AT4G11320 | 48.750 | 320 | 150 | 6 | 29 | 342 | 51 | 362 | 1.90e-101 | 306 |
MS.gene69449.t1 | AT4G11310 | 48.428 | 318 | 154 | 5 | 29 | 342 | 44 | 355 | 2.20e-101 | 306 |
MS.gene69449.t1 | AT2G27420 | 45.042 | 353 | 157 | 8 | 13 | 338 | 4 | 346 | 5.75e-99 | 300 |
MS.gene69449.t1 | AT5G50260 | 45.690 | 348 | 179 | 4 | 7 | 346 | 4 | 349 | 6.22e-99 | 300 |
MS.gene69449.t1 | AT5G45890 | 44.571 | 350 | 173 | 7 | 1 | 339 | 6 | 345 | 3.63e-98 | 297 |
MS.gene69449.t1 | AT3G49340 | 46.746 | 338 | 164 | 7 | 14 | 338 | 5 | 339 | 1.30e-95 | 291 |
MS.gene69449.t1 | AT1G06260 | 49.026 | 308 | 149 | 5 | 34 | 340 | 43 | 343 | 4.73e-94 | 287 |
MS.gene69449.t1 | AT2G34080 | 40.974 | 349 | 181 | 7 | 8 | 339 | 4 | 344 | 6.31e-87 | 268 |
MS.gene69449.t1 | AT1G29090 | 40.055 | 362 | 183 | 7 | 3 | 339 | 2 | 354 | 1.37e-84 | 263 |
MS.gene69449.t1 | AT1G29080 | 42.718 | 309 | 170 | 5 | 35 | 339 | 40 | 345 | 9.47e-84 | 260 |
MS.gene69449.t1 | AT3G43960 | 44.615 | 325 | 166 | 10 | 33 | 350 | 40 | 357 | 1.79e-83 | 261 |
MS.gene69449.t1 | AT4G35350 | 51.029 | 243 | 114 | 3 | 32 | 274 | 49 | 286 | 3.49e-80 | 249 |
MS.gene69449.t1 | AT3G19400 | 51.626 | 246 | 100 | 6 | 33 | 269 | 43 | 278 | 3.52e-80 | 249 |
MS.gene69449.t1 | AT1G29110 | 38.053 | 339 | 192 | 5 | 6 | 339 | 8 | 333 | 6.82e-73 | 232 |
MS.gene69449.t1 | AT3G48350 | 45.357 | 280 | 144 | 5 | 1 | 274 | 1 | 277 | 2.67e-70 | 224 |
MS.gene69449.t1 | AT5G60360 | 39.809 | 314 | 165 | 9 | 34 | 339 | 59 | 356 | 8.21e-65 | 212 |
MS.gene69449.t1 | AT3G45310 | 41.083 | 314 | 161 | 9 | 34 | 339 | 59 | 356 | 9.43e-65 | 212 |
MS.gene69449.t1 | AT3G45310 | 40.764 | 314 | 161 | 9 | 34 | 339 | 59 | 355 | 1.42e-62 | 206 |
MS.gene69449.t1 | AT5G60360 | 39.172 | 314 | 166 | 9 | 34 | 339 | 59 | 355 | 2.99e-62 | 205 |
MS.gene69449.t1 | AT5G60360 | 40.273 | 293 | 155 | 8 | 34 | 318 | 59 | 339 | 1.19e-61 | 204 |
MS.gene69449.t1 | AT4G39090 | 37.798 | 336 | 174 | 11 | 24 | 341 | 44 | 362 | 1.59e-60 | 201 |
MS.gene69449.t1 | AT3G54940 | 37.048 | 332 | 178 | 11 | 30 | 342 | 47 | 366 | 9.41e-60 | 199 |
MS.gene69449.t1 | AT2G21430 | 38.576 | 337 | 172 | 12 | 24 | 342 | 41 | 360 | 1.20e-59 | 199 |
MS.gene69449.t1 | AT4G16190 | 36.236 | 356 | 186 | 12 | 16 | 345 | 32 | 372 | 2.76e-55 | 187 |
MS.gene69449.t1 | AT3G54940 | 35.319 | 235 | 139 | 4 | 30 | 256 | 47 | 276 | 7.89e-41 | 147 |
MS.gene69449.t1 | AT4G01610 | 28.852 | 305 | 173 | 16 | 56 | 331 | 41 | 330 | 2.04e-17 | 83.6 |
MS.gene69449.t1 | AT4G01610 | 28.197 | 305 | 175 | 16 | 56 | 331 | 41 | 330 | 1.24e-15 | 78.2 |
MS.gene69449.t1 | AT1G02300 | 26.577 | 222 | 133 | 9 | 143 | 340 | 146 | 361 | 4.23e-11 | 64.7 |
Find 115 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGACCATGTTCAACTTATT+TGG | 0.109517 | 3.3:-92691165 | MS.gene69449:CDS |
CCTTGTTGTCAATGATAAAT+TGG | 0.219943 | 3.3:+92691636 | None:intergenic |
GGAGGTGGGACAGGAGGATT+GGG | 0.228778 | 3.3:+92690963 | None:intergenic |
CGGAAAACGGAGTAGATTAT+TGG | 0.260874 | 3.3:-92691112 | MS.gene69449:CDS |
CGAATTGTTGATCTTCAATA+TGG | 0.262283 | 3.3:+92692791 | None:intergenic |
CTCTAATCATACAGTTAAAA+AGG | 0.286687 | 3.3:-92691420 | MS.gene69449:intron |
ACATATTCCAAGAAATTTCT+TGG | 0.288831 | 3.3:+92690878 | None:intergenic |
AGGCGTGTTGTTACGATTGA+TGG | 0.304945 | 3.3:-92691400 | MS.gene69449:CDS |
TGTTGTGCCAAGAAATTTCT+TGG | 0.305181 | 3.3:-92690885 | MS.gene69449:CDS |
AGGAGGATTGGGGCTGGTCT+TGG | 0.309200 | 3.3:+92690974 | None:intergenic |
AAAATTCTTGGGGAAAATCT+TGG | 0.324006 | 3.3:-92691082 | MS.gene69449:CDS |
CGGAAGAGGAAAAGCATTAC+AGG | 0.334307 | 3.3:-92692978 | MS.gene69449:CDS |
TGGAGGTGGGACAGGAGGAT+TGG | 0.334659 | 3.3:+92690962 | None:intergenic |
AAGCTCCTTCTGAGATTGAT+TGG | 0.339906 | 3.3:-92692750 | MS.gene69449:CDS |
CCGCATATGCCTACGCTAAC+AGG | 0.347930 | 3.3:+92691319 | None:intergenic |
AAATTCTTGGGGAAAATCTT+GGG | 0.360195 | 3.3:-92691081 | MS.gene69449:CDS |
GATCAACAATTCGATGATAA+TGG | 0.365773 | 3.3:-92692781 | MS.gene69449:CDS |
CACCTCCACCAGGTCCTATA+AGG | 0.367239 | 3.3:-92690947 | MS.gene69449:CDS |
GTAAACAAATTACACCTTAT+AGG | 0.367395 | 3.3:+92690933 | None:intergenic |
TTCTTGGAATATGTTTCTCT+TGG | 0.370661 | 3.3:-92690869 | MS.gene69449:CDS |
CATGTTGTTTGCTCCACTCT+TGG | 0.376144 | 3.3:+92693016 | None:intergenic |
TGTCTCACAACACAATCAAA+TGG | 0.386774 | 3.3:-92692926 | MS.gene69449:CDS |
GAAGAAAGGGAAACAATTCA+TGG | 0.396707 | 3.3:+92693119 | None:intergenic |
TAATTTCAGGGTATCTTCAC+TGG | 0.406924 | 3.3:-92691185 | MS.gene69449:intron |
AGGAAGGAGCCAATGTCTTA+AGG | 0.410638 | 3.3:-92690766 | MS.gene69449:intron |
GCAGTGTTGATTGTAGGATA+TGG | 0.413085 | 3.3:-92691137 | MS.gene69449:CDS |
GGACCTGGTGGAGGTGGGAC+AGG | 0.431037 | 3.3:+92690954 | None:intergenic |
GACGAGTGGTCTTGAATTCA+TGG | 0.438570 | 3.3:+92692854 | None:intergenic |
CTCCTTCCTGTGTCGCAAAT+CGG | 0.440855 | 3.3:+92690780 | None:intergenic |
TGCGATAGAACTTATAATAG+TGG | 0.441166 | 3.3:-92691689 | MS.gene69449:CDS |
GAGCCTTTCTGAACAAGAAC+TGG | 0.441747 | 3.3:-92691717 | MS.gene69449:CDS |
AACAAGTACCACAGCTTCCT+TGG | 0.449023 | 3.3:+92692695 | None:intergenic |
GCTCAACCTTTGAGTATAGC+TGG | 0.455156 | 3.3:+92691281 | None:intergenic |
AACTTCTGCCGTATGTTGTA+AGG | 0.456184 | 3.3:-92690832 | MS.gene69449:CDS |
GGGATAAATAAAATTGTGAC+AGG | 0.462626 | 3.3:-92691749 | MS.gene69449:CDS |
GTCTCACAACACAATCAAAT+GGG | 0.464045 | 3.3:-92692925 | MS.gene69449:CDS |
TGGGACAGGAGGATTGGGGC+TGG | 0.464785 | 3.3:+92690968 | None:intergenic |
GTTGAGGGAGAGGGTATAAC+TGG | 0.464837 | 3.3:+92692897 | None:intergenic |
GACAATTCTGCCGGGTTATG+TGG | 0.469503 | 3.3:-92691023 | MS.gene69449:CDS |
CTTATAGGACCTGGTGGAGG+TGG | 0.469543 | 3.3:+92690948 | None:intergenic |
GGAAAATCTTGGGGAATGAA+TGG | 0.472095 | 3.3:-92691071 | MS.gene69449:CDS |
AGACAAAAGCATAATTGTCT+TGG | 0.473308 | 3.3:+92692944 | None:intergenic |
TTGAATCTTAACAACGAAGA+AGG | 0.474141 | 3.3:+92692820 | None:intergenic |
AAGAATCGTAAAATGAAGAA+AGG | 0.479815 | 3.3:+92693105 | None:intergenic |
GAATTCAAGACCACTCGTCT+TGG | 0.484353 | 3.3:-92692850 | MS.gene69449:CDS |
GTAGGATATGGTTCGGAAAA+CGG | 0.484771 | 3.3:-92691125 | MS.gene69449:CDS |
GACCATGCAGTGTTGATTGT+AGG | 0.492425 | 3.3:-92691143 | MS.gene69449:CDS |
GTTGATTGTAGGATATGGTT+CGG | 0.492801 | 3.3:-92691132 | MS.gene69449:CDS |
CCTCCTGTCCCACCTCCACC+AGG | 0.493624 | 3.3:-92690957 | MS.gene69449:CDS |
CGAAACACTGACAATTCTGC+CGG | 0.494025 | 3.3:-92691032 | MS.gene69449:CDS |
CTGCGAAAGCGTTGAGGGAG+AGG | 0.496556 | 3.3:+92692887 | None:intergenic |
AACTTTCAGAGAATTGCAAA+TGG | 0.496720 | 3.3:-92690468 | MS.gene69449:intron |
GGATTGGGGCTGGTCTTGGT+TGG | 0.499898 | 3.3:+92690978 | None:intergenic |
ACATGGCAAAACATACTCTT+CGG | 0.504448 | 3.3:-92692998 | MS.gene69449:CDS |
GAGGTGGGACAGGAGGATTG+GGG | 0.504545 | 3.3:+92690964 | None:intergenic |
TATATTATGCAGGTGCTTGT+TGG | 0.506019 | 3.3:-92691799 | MS.gene69449:intron |
CTACCAGTTCTTGTTCAGAA+AGG | 0.514862 | 3.3:+92691714 | None:intergenic |
GAAGAGTTTAGAAGTGTCGT+TGG | 0.523076 | 3.3:+92693038 | None:intergenic |
AAGATCTGCGAAAGCGTTGA+GGG | 0.523858 | 3.3:+92692882 | None:intergenic |
TCGGCTACCGGCGCTATCGA+AGG | 0.524156 | 3.3:-92691770 | MS.gene69449:CDS |
AGTAGTTGACGACTTTGATA+CGG | 0.524727 | 3.3:+92691590 | None:intergenic |
TTGATACGGGTAATCTTCCT+CGG | 0.528900 | 3.3:+92691604 | None:intergenic |
AGAATCGTAAAATGAAGAAA+GGG | 0.533049 | 3.3:+92693106 | None:intergenic |
TGGTTGTGATGGTGGACTCA+TGG | 0.533089 | 3.3:-92691669 | MS.gene69449:CDS |
GAGTTTAGAAGTGTCGTTGG+AGG | 0.544087 | 3.3:+92693041 | None:intergenic |
AATTTATCATTGACAACAAG+GGG | 0.547366 | 3.3:-92691634 | MS.gene69449:CDS |
CAAAACATACTCTTCGGAAG+AGG | 0.547389 | 3.3:-92692992 | MS.gene69449:CDS |
GGCTTTCCAGCTATACTCAA+AGG | 0.552750 | 3.3:-92691287 | MS.gene69449:intron |
AAAGTATCTTCTTTATCGGA+TGG | 0.553823 | 3.3:+92690432 | None:intergenic |
GATTATCCGATTTGCGACAC+AGG | 0.554458 | 3.3:-92690786 | MS.gene69449:CDS |
GTAGTTGACGACTTTGATAC+GGG | 0.555441 | 3.3:+92691591 | None:intergenic |
TAGGCATATGCGGTAGTGCA+AGG | 0.556213 | 3.3:-92691309 | MS.gene69449:CDS |
ACTTTCAGAGAATTGCAAAT+GGG | 0.556305 | 3.3:-92690467 | MS.gene69449:intron |
CCTGGTGGAGGTGGGACAGG+AGG | 0.556666 | 3.3:+92690957 | None:intergenic |
AATTCTTGGGGAAAATCTTG+GGG | 0.568100 | 3.3:-92691080 | MS.gene69449:CDS |
CCAATTTATCATTGACAACA+AGG | 0.568474 | 3.3:-92691636 | MS.gene69449:CDS |
ACGCTTATCCTTACAACATA+CGG | 0.573675 | 3.3:+92690824 | None:intergenic |
CGGCTACCGGCGCTATCGAA+GGG | 0.573864 | 3.3:-92691769 | MS.gene69449:CDS |
TGTTTACTTACTGTTCAAGA+GGG | 0.575277 | 3.3:-92690917 | MS.gene69449:CDS |
TTTCTCCAATCAATCTCAGA+AGG | 0.577692 | 3.3:+92692745 | None:intergenic |
TTGTTTACTTACTGTTCAAG+AGG | 0.582368 | 3.3:-92690918 | MS.gene69449:CDS |
CATGTTGATTCCACATAACC+CGG | 0.585499 | 3.3:+92691013 | None:intergenic |
ATCCGATTTGCGACACAGGA+AGG | 0.586995 | 3.3:-92690782 | MS.gene69449:CDS |
TATAATAGTGGTTGTGATGG+TGG | 0.587393 | 3.3:-92691677 | MS.gene69449:CDS |
CCTGTTAGCGTAGGCATATG+CGG | 0.590888 | 3.3:-92691319 | MS.gene69449:CDS |
CTTCTAAACTCTTCCAAGAG+TGG | 0.597993 | 3.3:-92693029 | MS.gene69449:CDS |
TGCGAAAGCGTTGAGGGAGA+GGG | 0.599343 | 3.3:+92692888 | None:intergenic |
TCGTACAAACCTTAAGACAT+TGG | 0.602539 | 3.3:+92690757 | None:intergenic |
CAATTTATCATTGACAACAA+GGG | 0.603160 | 3.3:-92691635 | MS.gene69449:CDS |
ATCCTACAATCAACACTGCA+TGG | 0.609724 | 3.3:+92691141 | None:intergenic |
TAAGATCTGCGAAAGCGTTG+AGG | 0.611274 | 3.3:+92692881 | None:intergenic |
CAAGAGTGGAGCAAACAACA+TGG | 0.613878 | 3.3:-92693015 | MS.gene69449:CDS |
TTATAGGACCTGGTGGAGGT+GGG | 0.616742 | 3.3:+92690949 | None:intergenic |
GTCAAAGACCAAGGAAGCTG+TGG | 0.619485 | 3.3:-92692703 | MS.gene69449:intron |
GAAACACTGACAATTCTGCC+GGG | 0.620961 | 3.3:-92691031 | MS.gene69449:CDS |
GCAGTCCAACCTGTTAGCGT+AGG | 0.624437 | 3.3:-92691328 | MS.gene69449:CDS |
AGGCATATGCGGTAGTGCAA+GGG | 0.627713 | 3.3:-92691308 | MS.gene69449:CDS |
CACCTTATAGGACCTGGTGG+AGG | 0.632080 | 3.3:+92690945 | None:intergenic |
ATTTATCCCTTCGATAGCGC+CGG | 0.633443 | 3.3:+92691763 | None:intergenic |
AGTGGTCTTGAATTCATGGT+GGG | 0.644824 | 3.3:+92692858 | None:intergenic |
AAATTACACCTTATAGGACC+TGG | 0.645003 | 3.3:+92690939 | None:intergenic |
ACTTATAATAGTGGTTGTGA+TGG | 0.645070 | 3.3:-92691680 | MS.gene69449:CDS |
GTTTACTTACTGTTCAAGAG+GGG | 0.646992 | 3.3:-92690916 | MS.gene69449:CDS |
AGGTGAAAAGCCAAGACGAG+TGG | 0.648629 | 3.3:+92692840 | None:intergenic |
GAGATTGATTGGAGAAAGAG+TGG | 0.655370 | 3.3:-92692739 | MS.gene69449:CDS |
TGTTTCTCTTGGAAATGCTG+TGG | 0.659910 | 3.3:-92690858 | MS.gene69449:CDS |
GTTACTTCTGTCAAAGACCA+AGG | 0.660559 | 3.3:-92692712 | MS.gene69449:CDS |
TCGCAAATCGGATAATCTAG+AGG | 0.660600 | 3.3:+92690792 | None:intergenic |
TGGTCCAAATAAGTTGAACA+TGG | 0.672306 | 3.3:+92691161 | None:intergenic |
TGAATGGATACATACACATG+TGG | 0.673377 | 3.3:-92691055 | MS.gene69449:CDS |
TTACACCTTATAGGACCTGG+TGG | 0.678738 | 3.3:+92690942 | None:intergenic |
ATATGCCTACGCTAACAGGT+TGG | 0.685295 | 3.3:+92691323 | None:intergenic |
GAGTGGTCTTGAATTCATGG+TGG | 0.700858 | 3.3:+92692857 | None:intergenic |
GGATAAATAAAATTGTGACA+GGG | 0.732911 | 3.3:-92691748 | MS.gene69449:CDS |
CAACAAGGGGATTGACACCG+AGG | 0.745272 | 3.3:-92691621 | MS.gene69449:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATAATAAAAAAAATTATA+AGG | - | chr3.3:92691085-92691104 | MS.gene69449:CDS | 0.0% |
!! | TAATATACATAGAATATTAT+TGG | + | chr3.3:92691749-92691768 | None:intergenic | 10.0% |
!! | TTAATAATCAAATTTGAAAA+GGG | - | chr3.3:92690955-92690974 | MS.gene69449:CDS | 10.0% |
!! | GTTAATAATCAAATTTGAAA+AGG | - | chr3.3:92690954-92690973 | MS.gene69449:CDS | 15.0% |
!! | TTTATAAAGATGTTAAATGA+GGG | - | chr3.3:92691387-92691406 | MS.gene69449:CDS | 15.0% |
!!! | TTCTTCTTATTTTAATTTCA+GGG | - | chr3.3:92692364-92692383 | MS.gene69449:intron | 15.0% |
!! | ACTACTAATACAAACTATAA+CGG | + | chr3.3:92691252-92691271 | None:intergenic | 20.0% |
!! | ATAGATTGATGTTTAATACT+TGG | - | chr3.3:92691131-92691150 | MS.gene69449:CDS | 20.0% |
!! | ATATTCTATGTATATTATGC+AGG | - | chr3.3:92691752-92691771 | MS.gene69449:CDS | 20.0% |
!! | ATTGGATTGTAAAAAATTCT+TGG | - | chr3.3:92692467-92692486 | MS.gene69449:intron | 20.0% |
!! | GTTTATAAAGATGTTAAATG+AGG | - | chr3.3:92691386-92691405 | MS.gene69449:CDS | 20.0% |
!! | TAGATTGATGTTTAATACTT+GGG | - | chr3.3:92691132-92691151 | MS.gene69449:CDS | 20.0% |
!! | TTCAACTACAATAAGTATTT+AGG | - | chr3.3:92691319-92691338 | MS.gene69449:CDS | 20.0% |
!! | TTGGATTGTAAAAAATTCTT+GGG | - | chr3.3:92692468-92692487 | MS.gene69449:intron | 20.0% |
!!! | GTTCTTCTTATTTTAATTTC+AGG | - | chr3.3:92692363-92692382 | MS.gene69449:intron | 20.0% |
! | AAGAATCGTAAAATGAAGAA+AGG | + | chr3.3:92690459-92690478 | None:intergenic | 25.0% |
! | AATTTATCATTGACAACAAG+GGG | - | chr3.3:92691927-92691946 | MS.gene69449:intron | 25.0% |
! | ACATATTCCAAGAAATTTCT+TGG | + | chr3.3:92692686-92692705 | None:intergenic | 25.0% |
! | AGAATCGTAAAATGAAGAAA+GGG | + | chr3.3:92690458-92690477 | None:intergenic | 25.0% |
! | AGATTGATGTTTAATACTTG+GGG | - | chr3.3:92691133-92691152 | MS.gene69449:CDS | 25.0% |
! | ATAATCAAATTTGAAAAGGG+TGG | - | chr3.3:92690958-92690977 | MS.gene69449:CDS | 25.0% |
! | ATGGTCAATATTAGTAACAT+AGG | - | chr3.3:92692306-92692325 | MS.gene69449:intron | 25.0% |
! | CAATTTATCATTGACAACAA+GGG | - | chr3.3:92691926-92691945 | MS.gene69449:intron | 25.0% |
! | CTATACTCATCATAAGTAAA+TGG | - | chr3.3:92692839-92692858 | MS.gene69449:CDS | 25.0% |
! | CTCTAATCATACAGTTAAAA+AGG | - | chr3.3:92692141-92692160 | MS.gene69449:intron | 25.0% |
! | GGATAAATAAAATTGTGACA+GGG | - | chr3.3:92691813-92691832 | MS.gene69449:intron | 25.0% |
! | GTAAACAAATTACACCTTAT+AGG | + | chr3.3:92692631-92692650 | None:intergenic | 25.0% |
! | GTATTAGTAGTAGATATTTG+AGG | - | chr3.3:92691261-92691280 | MS.gene69449:intron | 25.0% |
! | TAATCAAATTTGAAAAGGGT+GGG | - | chr3.3:92690959-92690978 | MS.gene69449:CDS | 25.0% |
! | TACTTATGATGAGTATAGAA+AGG | + | chr3.3:92692837-92692856 | None:intergenic | 25.0% |
! | TGGATTGTAAAAAATTCTTG+GGG | - | chr3.3:92692469-92692488 | MS.gene69449:intron | 25.0% |
! | TTGTCAATGTTGTTAAATAG+AGG | - | chr3.3:92692891-92692910 | MS.gene69449:CDS | 25.0% |
!! | AACAATTTCTTTTGCATTAG+AGG | + | chr3.3:92691173-92691192 | None:intergenic | 25.0% |
!!! | AGGCTTGTTTTTATGTTTTT+AGG | - | chr3.3:92691360-92691379 | MS.gene69449:CDS | 25.0% |
!!! | CTTTTTAACTGTATGATTAG+AGG | + | chr3.3:92692143-92692162 | None:intergenic | 25.0% |
!!! | TGCTTTATTTCTTTAAGCAT+TGG | - | chr3.3:92691688-92691707 | MS.gene69449:CDS | 25.0% |
AAAATTCTTGGGGAAAATCT+TGG | - | chr3.3:92692479-92692498 | MS.gene69449:intron | 30.0% | |
AAATTCTTGGGGAAAATCTT+GGG | - | chr3.3:92692480-92692499 | MS.gene69449:intron | 30.0% | |
AACTTTCAGAGAATTGCAAA+TGG | - | chr3.3:92693093-92693112 | MS.gene69449:CDS | 30.0% | |
ACTACTTTGCAAAAAAGACA+AGG | - | chr3.3:92691988-92692007 | MS.gene69449:intron | 30.0% | |
ACTTATAATAGTGGTTGTGA+TGG | - | chr3.3:92691881-92691900 | MS.gene69449:intron | 30.0% | |
ACTTTCAGAGAATTGCAAAT+GGG | - | chr3.3:92693094-92693113 | MS.gene69449:CDS | 30.0% | |
CCAATTTATCATTGACAACA+AGG | - | chr3.3:92691925-92691944 | MS.gene69449:intron | 30.0% | |
CGAATTGTTGATCTTCAATA+TGG | + | chr3.3:92690773-92690792 | None:intergenic | 30.0% | |
GATCAACAATTCGATGATAA+TGG | - | chr3.3:92690780-92690799 | MS.gene69449:CDS | 30.0% | |
GATTGATGTTTAATACTTGG+GGG | - | chr3.3:92691134-92691153 | MS.gene69449:CDS | 30.0% | |
GGGATAAATAAAATTGTGAC+AGG | - | chr3.3:92691812-92691831 | MS.gene69449:intron | 30.0% | |
GGTCCAATATTGAACAAATT+GGG | - | chr3.3:92692860-92692879 | MS.gene69449:CDS | 30.0% | |
TGACGAGAAAAAACTACTAA+AGG | - | chr3.3:92692205-92692224 | MS.gene69449:intron | 30.0% | |
TGCGATAGAACTTATAATAG+TGG | - | chr3.3:92691872-92691891 | MS.gene69449:intron | 30.0% | |
TGCTGTCAAAATATCATTTC+TGG | + | chr3.3:92691444-92691463 | None:intergenic | 30.0% | |
TGGTCCAATATTGAACAAAT+TGG | - | chr3.3:92692859-92692878 | MS.gene69449:CDS | 30.0% | |
TGTTTACTTACTGTTCAAGA+GGG | - | chr3.3:92692644-92692663 | MS.gene69449:intron | 30.0% | |
TTATGATGAGTATAGAAAGG+AGG | + | chr3.3:92692834-92692853 | None:intergenic | 30.0% | |
TTCTTGGAATATGTTTCTCT+TGG | - | chr3.3:92692692-92692711 | MS.gene69449:intron | 30.0% | |
TTGAATCTTAACAACGAAGA+AGG | + | chr3.3:92690744-92690763 | None:intergenic | 30.0% | |
TTGTTTACTTACTGTTCAAG+AGG | - | chr3.3:92692643-92692662 | MS.gene69449:intron | 30.0% | |
! | AGACAAAAGCATAATTGTCT+TGG | + | chr3.3:92690620-92690639 | None:intergenic | 30.0% |
! | CCTTGTTGTCAATGATAAAT+TGG | + | chr3.3:92691928-92691947 | None:intergenic | 30.0% |
! | TCACCCAATTTGTTCAATAT+TGG | + | chr3.3:92692866-92692885 | None:intergenic | 30.0% |
! | TGAACAATAGCCATTGTTTT+GGG | - | chr3.3:92692929-92692948 | MS.gene69449:CDS | 30.0% |
! | TTGAACAATAGCCATTGTTT+TGG | - | chr3.3:92692928-92692947 | MS.gene69449:CDS | 30.0% |
!! | AGACAGCTTATTAGTTTGTA+AGG | - | chr3.3:92691012-92691031 | MS.gene69449:CDS | 30.0% |
!! | AGCTTATTAGTTTGTAAGGT+GGG | - | chr3.3:92691016-92691035 | MS.gene69449:CDS | 30.0% |
!! | GTGTTGGGTGTATTTTTATA+TGG | - | chr3.3:92691546-92691565 | MS.gene69449:intron | 30.0% |
!!! | AGTAGTTTTTTCTCGTCATT+TGG | + | chr3.3:92692203-92692222 | None:intergenic | 30.0% |
AAATTACACCTTATAGGACC+TGG | + | chr3.3:92692625-92692644 | None:intergenic | 35.0% | |
AATAGCGTATCCCAAAACAA+TGG | + | chr3.3:92692942-92692961 | None:intergenic | 35.0% | |
AATTCTTGGGGAAAATCTTG+GGG | - | chr3.3:92692481-92692500 | MS.gene69449:intron | 35.0% | |
ACATGGCAAAACATACTCTT+CGG | - | chr3.3:92690563-92690582 | MS.gene69449:intron | 35.0% | |
ACGCTTATCCTTACAACATA+CGG | + | chr3.3:92692740-92692759 | None:intergenic | 35.0% | |
ACTGCATCATTATACACTGT+CGG | + | chr3.3:92691477-92691496 | None:intergenic | 35.0% | |
AGTAGTTGACGACTTTGATA+CGG | + | chr3.3:92691974-92691993 | None:intergenic | 35.0% | |
GTAGTTGAAAAGCTTCCATA+GGG | + | chr3.3:92691308-92691327 | None:intergenic | 35.0% | |
GTCTCACAACACAATCAAAT+GGG | - | chr3.3:92690636-92690655 | MS.gene69449:intron | 35.0% | |
GTTGATTGTAGGATATGGTT+CGG | - | chr3.3:92692429-92692448 | MS.gene69449:intron | 35.0% | |
GTTTACTTACTGTTCAAGAG+GGG | - | chr3.3:92692645-92692664 | MS.gene69449:intron | 35.0% | |
TAACTGTATGATTAGAGGTG+AGG | + | chr3.3:92692138-92692157 | None:intergenic | 35.0% | |
TAAGCTGATTATCATGTTGC+TGG | - | chr3.3:92693030-92693049 | MS.gene69449:CDS | 35.0% | |
TATAATAGTGGTTGTGATGG+TGG | - | chr3.3:92691884-92691903 | MS.gene69449:intron | 35.0% | |
TATATTATGCAGGTGCTTGT+TGG | - | chr3.3:92691762-92691781 | MS.gene69449:CDS | 35.0% | |
TCGTACAAACCTTAAGACAT+TGG | + | chr3.3:92692807-92692826 | None:intergenic | 35.0% | |
TGAATGGATACATACACATG+TGG | - | chr3.3:92692506-92692525 | MS.gene69449:intron | 35.0% | |
TGCAAATTCGCAACAGTAAT+TGG | + | chr3.3:92692336-92692355 | None:intergenic | 35.0% | |
TGGACCATGTTCAACTTATT+TGG | - | chr3.3:92692396-92692415 | MS.gene69449:intron | 35.0% | |
TGTAGTTGAAAAGCTTCCAT+AGG | + | chr3.3:92691309-92691328 | None:intergenic | 35.0% | |
TGTCTCACAACACAATCAAA+TGG | - | chr3.3:92690635-92690654 | MS.gene69449:intron | 35.0% | |
TGTTGTGCCAAGAAATTTCT+TGG | - | chr3.3:92692676-92692695 | MS.gene69449:intron | 35.0% | |
TTAGATAAGCTTCTACCCTA+TGG | - | chr3.3:92691290-92691309 | MS.gene69449:CDS | 35.0% | |
TTTCTCCAATCAATCTCAGA+AGG | + | chr3.3:92690819-92690838 | None:intergenic | 35.0% | |
! | AAACAAGCCTTTTCATCATG+AGG | + | chr3.3:92691350-92691369 | None:intergenic | 35.0% |
! | CATAAGTTGAGAACAAGTTG+AGG | + | chr3.3:92691622-92691641 | None:intergenic | 35.0% |
! | GGTTTTACCTCATGATGAAA+AGG | - | chr3.3:92691340-92691359 | MS.gene69449:CDS | 35.0% |
! | TAATTTCAGGGTATCTTCAC+TGG | - | chr3.3:92692376-92692395 | MS.gene69449:intron | 35.0% |
! | TGGTCCAAATAAGTTGAACA+TGG | + | chr3.3:92692403-92692422 | None:intergenic | 35.0% |
! | TTTTTCTCGCTATCCTAGTT+AGG | - | chr3.3:92691514-92691533 | MS.gene69449:intron | 35.0% |
!! | CAGCTTATTAGTTTGTAAGG+TGG | - | chr3.3:92691015-92691034 | MS.gene69449:CDS | 35.0% |
!! | GCTTATTAGTTTGTAAGGTG+GGG | - | chr3.3:92691017-92691036 | MS.gene69449:CDS | 35.0% |
!!! | AGTTTTTTCTCGTCATTTGG+AGG | + | chr3.3:92692200-92692219 | None:intergenic | 35.0% |
AACTTCTGCCGTATGTTGTA+AGG | - | chr3.3:92692729-92692748 | MS.gene69449:CDS | 40.0% | |
AAGGTGGGGTTATGTGAATT+GGG | - | chr3.3:92691031-92691050 | MS.gene69449:CDS | 40.0% | |
AATGCCATAGCACTGTTTCA+TGG | - | chr3.3:92692986-92693005 | MS.gene69449:CDS | 40.0% | |
ATCCTACAATCAACACTGCA+TGG | + | chr3.3:92692423-92692442 | None:intergenic | 40.0% | |
ATGGTGTACACGTACAATGT+CGG | - | chr3.3:92691565-92691584 | MS.gene69449:intron | 40.0% | |
CAAAACATACTCTTCGGAAG+AGG | - | chr3.3:92690569-92690588 | MS.gene69449:intron | 40.0% | |
CGGAAAACGGAGTAGATTAT+TGG | - | chr3.3:92692449-92692468 | MS.gene69449:intron | 40.0% | |
CTACCAGTTCTTGTTCAGAA+AGG | + | chr3.3:92691850-92691869 | None:intergenic | 40.0% | |
CTTCTAAACTCTTCCAAGAG+TGG | - | chr3.3:92690532-92690551 | MS.gene69449:intron | 40.0% | |
GAGATTGATTGGAGAAAGAG+TGG | - | chr3.3:92690822-92690841 | MS.gene69449:CDS | 40.0% | |
GGAAAATCTTGGGGAATGAA+TGG | - | chr3.3:92692490-92692509 | MS.gene69449:intron | 40.0% | |
GGAGCTTATGAGAAAATGTG+AGG | - | chr3.3:92691408-92691427 | MS.gene69449:CDS | 40.0% | |
GTAGTTGACGACTTTGATAC+GGG | + | chr3.3:92691973-92691992 | None:intergenic | 40.0% | |
GTTACTTCTGTCAAAGACCA+AGG | - | chr3.3:92690849-92690868 | MS.gene69449:CDS | 40.0% | |
TAAGGTGGGGTTATGTGAAT+TGG | - | chr3.3:92691030-92691049 | MS.gene69449:CDS | 40.0% | |
TAATACTTGGGGGACATAGA+AGG | - | chr3.3:92691144-92691163 | MS.gene69449:CDS | 40.0% | |
TACTCAAAGGTTGAGCTCAA+TGG | - | chr3.3:92692287-92692306 | MS.gene69449:intron | 40.0% | |
TCGCAAATCGGATAATCTAG+AGG | + | chr3.3:92692772-92692791 | None:intergenic | 40.0% | |
TGTTTCTCTTGGAAATGCTG+TGG | - | chr3.3:92692703-92692722 | MS.gene69449:intron | 40.0% | |
TTGATACGGGTAATCTTCCT+CGG | + | chr3.3:92691960-92691979 | None:intergenic | 40.0% | |
! | AGTGCTATGGCATTGCTATT+TGG | + | chr3.3:92692980-92692999 | None:intergenic | 40.0% |
! | AGTGGTCTTGAATTCATGGT+GGG | + | chr3.3:92690706-92690725 | None:intergenic | 40.0% |
! | GTAGGATATGGTTCGGAAAA+CGG | - | chr3.3:92692436-92692455 | MS.gene69449:intron | 40.0% |
!! | AAGCTCCTTCTGAGATTGAT+TGG | - | chr3.3:92690811-92690830 | MS.gene69449:CDS | 40.0% |
!! | AGGTGCTTGTTGGTCATTTT+CGG | - | chr3.3:92691772-92691791 | MS.gene69449:CDS | 40.0% |
!! | CATGTTGATTCCACATAACC+CGG | + | chr3.3:92692551-92692570 | None:intergenic | 40.0% |
!! | GAAGAGTTTAGAAGTGTCGT+TGG | + | chr3.3:92690526-92690545 | None:intergenic | 40.0% |
!! | GCAGTGTTGATTGTAGGATA+TGG | - | chr3.3:92692424-92692443 | MS.gene69449:intron | 40.0% |
AACAAGTACCACAGCTTCCT+TGG | + | chr3.3:92690869-92690888 | None:intergenic | 45.0% | |
ACACAATTGCCGACCTAACT+AGG | + | chr3.3:92691530-92691549 | None:intergenic | 45.0% | |
AGGAAGGAGCCAATGTCTTA+AGG | - | chr3.3:92692795-92692814 | MS.gene69449:CDS | 45.0% | |
AGTTAGGTCGGCAATTGTGT+TGG | - | chr3.3:92691530-92691549 | MS.gene69449:intron | 45.0% | |
ATATGCCTACGCTAACAGGT+TGG | + | chr3.3:92692241-92692260 | None:intergenic | 45.0% | |
ATTTATCCCTTCGATAGCGC+CGG | + | chr3.3:92691801-92691820 | None:intergenic | 45.0% | |
CAAGAGTGGAGCAAACAACA+TGG | - | chr3.3:92690546-92690565 | MS.gene69449:intron | 45.0% | |
CGAAACACTGACAATTCTGC+CGG | - | chr3.3:92692529-92692548 | MS.gene69449:intron | 45.0% | |
GAAACACTGACAATTCTGCC+GGG | - | chr3.3:92692530-92692549 | MS.gene69449:intron | 45.0% | |
GAATTCAAGACCACTCGTCT+TGG | - | chr3.3:92690711-92690730 | MS.gene69449:intron | 45.0% | |
GAGCCTTTCTGAACAAGAAC+TGG | - | chr3.3:92691844-92691863 | MS.gene69449:intron | 45.0% | |
GCTCAACCTTTGAGTATAGC+TGG | + | chr3.3:92692283-92692302 | None:intergenic | 45.0% | |
GGCTTTCCAGCTATACTCAA+AGG | - | chr3.3:92692274-92692293 | MS.gene69449:intron | 45.0% | |
GTTAGGTCGGCAATTGTGTT+GGG | - | chr3.3:92691531-92691550 | MS.gene69449:intron | 45.0% | |
TCTCGCTATCCTAGTTAGGT+CGG | - | chr3.3:92691518-92691537 | MS.gene69449:intron | 45.0% | |
TCTGCCATGAAACAGTGCTA+TGG | + | chr3.3:92692993-92693012 | None:intergenic | 45.0% | |
TGGGGTTATGTGAATTGGGA+TGG | - | chr3.3:92691035-92691054 | MS.gene69449:CDS | 45.0% | |
TGGTGTACACGTACAATGTC+GGG | - | chr3.3:92691566-92691585 | MS.gene69449:intron | 45.0% | |
TTACACCTTATAGGACCTGG+TGG | + | chr3.3:92692622-92692641 | None:intergenic | 45.0% | |
! | AGGCGTGTTGTTACGATTGA+TGG | - | chr3.3:92692161-92692180 | MS.gene69449:intron | 45.0% |
! | CATGTTGTTTGCTCCACTCT+TGG | + | chr3.3:92690548-92690567 | None:intergenic | 45.0% |
! | GACGAGTGGTCTTGAATTCA+TGG | + | chr3.3:92690710-92690729 | None:intergenic | 45.0% |
! | GAGTGGTCTTGAATTCATGG+TGG | + | chr3.3:92690707-92690726 | None:intergenic | 45.0% |
! | GATTATCCGATTTGCGACAC+AGG | - | chr3.3:92692775-92692794 | MS.gene69449:CDS | 45.0% |
!! | AAGATCTGCGAAAGCGTTGA+GGG | + | chr3.3:92690682-92690701 | None:intergenic | 45.0% |
!! | CGGAAGAGGAAAAGCATTAC+AGG | - | chr3.3:92690583-92690602 | MS.gene69449:intron | 45.0% |
!! | GACCATGCAGTGTTGATTGT+AGG | - | chr3.3:92692418-92692437 | MS.gene69449:intron | 45.0% |
!! | GAGTTTAGAAGTGTCGTTGG+AGG | + | chr3.3:92690523-92690542 | None:intergenic | 45.0% |
!! | TAAGATCTGCGAAAGCGTTG+AGG | + | chr3.3:92690683-92690702 | None:intergenic | 45.0% |
!! | TGTTGGTCATTTTCGGCTAC+CGG | - | chr3.3:92691779-92691798 | MS.gene69449:CDS | 45.0% |
!!! | ATTATTATTTTTATAATCTT+AGG | + | chr3.3:92691072-92691091 | None:intergenic | 5.0% |
AGGCATATGCGGTAGTGCAA+GGG | - | chr3.3:92692253-92692272 | MS.gene69449:intron | 50.0% | |
AGGTGAAAAGCCAAGACGAG+TGG | + | chr3.3:92690724-92690743 | None:intergenic | 50.0% | |
CCTGTTAGCGTAGGCATATG+CGG | - | chr3.3:92692242-92692261 | MS.gene69449:intron | 50.0% | |
CTCCTTCCTGTGTCGCAAAT+CGG | + | chr3.3:92692784-92692803 | None:intergenic | 50.0% | |
GACAATTCTGCCGGGTTATG+TGG | - | chr3.3:92692538-92692557 | MS.gene69449:intron | 50.0% | |
GTCAAAGACCAAGGAAGCTG+TGG | - | chr3.3:92690858-92690877 | MS.gene69449:CDS | 50.0% | |
TAGGCATATGCGGTAGTGCA+AGG | - | chr3.3:92692252-92692271 | MS.gene69449:intron | 50.0% | |
TTATAGGACCTGGTGGAGGT+GGG | + | chr3.3:92692615-92692634 | None:intergenic | 50.0% | |
! | ATCCGATTTGCGACACAGGA+AGG | - | chr3.3:92692779-92692798 | MS.gene69449:CDS | 50.0% |
! | GTTGAGGGAGAGGGTATAAC+TGG | + | chr3.3:92690667-92690686 | None:intergenic | 50.0% |
!! | TGGTTGTGATGGTGGACTCA+TGG | - | chr3.3:92691892-92691911 | MS.gene69449:intron | 50.0% |
CAACAAGGGGATTGACACCG+AGG | - | chr3.3:92691940-92691959 | MS.gene69449:intron | 55.0% | |
CACCTCCACCAGGTCCTATA+AGG | - | chr3.3:92692614-92692633 | MS.gene69449:intron | 55.0% | |
CACCTTATAGGACCTGGTGG+AGG | + | chr3.3:92692619-92692638 | None:intergenic | 55.0% | |
CCGCATATGCCTACGCTAAC+AGG | + | chr3.3:92692245-92692264 | None:intergenic | 55.0% | |
CTTATAGGACCTGGTGGAGG+TGG | + | chr3.3:92692616-92692635 | None:intergenic | 55.0% | |
GCAGTCCAACCTGTTAGCGT+AGG | - | chr3.3:92692233-92692252 | MS.gene69449:intron | 55.0% | |
!! | TGCGAAAGCGTTGAGGGAGA+GGG | + | chr3.3:92690676-92690695 | None:intergenic | 55.0% |
GAGGTGGGACAGGAGGATTG+GGG | + | chr3.3:92692600-92692619 | None:intergenic | 60.0% | |
GGAGGTGGGACAGGAGGATT+GGG | + | chr3.3:92692601-92692620 | None:intergenic | 60.0% | |
TGGAGGTGGGACAGGAGGAT+TGG | + | chr3.3:92692602-92692621 | None:intergenic | 60.0% | |
!! | AGGAGGATTGGGGCTGGTCT+TGG | + | chr3.3:92692590-92692609 | None:intergenic | 60.0% |
!! | CTGCGAAAGCGTTGAGGGAG+AGG | + | chr3.3:92690677-92690696 | None:intergenic | 60.0% |
!! | GGATTGGGGCTGGTCTTGGT+TGG | + | chr3.3:92692586-92692605 | None:intergenic | 60.0% |
CGGCTACCGGCGCTATCGAA+GGG | - | chr3.3:92691792-92691811 | MS.gene69449:intron | 65.0% | |
TCGGCTACCGGCGCTATCGA+AGG | - | chr3.3:92691791-92691810 | MS.gene69449:intron | 65.0% | |
TGGGACAGGAGGATTGGGGC+TGG | + | chr3.3:92692596-92692615 | None:intergenic | 65.0% | |
CCTCCTGTCCCACCTCCACC+AGG | - | chr3.3:92692604-92692623 | MS.gene69449:intron | 70.0% | |
CCTGGTGGAGGTGGGACAGG+AGG | + | chr3.3:92692607-92692626 | None:intergenic | 70.0% | |
GGACCTGGTGGAGGTGGGAC+AGG | + | chr3.3:92692610-92692629 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 92690444 | 92693139 | 92690444 | ID=MS.gene69449 |
chr3.3 | mRNA | 92690444 | 92693139 | 92690444 | ID=MS.gene69449.t1;Parent=MS.gene69449 |
chr3.3 | exon | 92692704 | 92693139 | 92692704 | ID=MS.gene69449.t1.exon1;Parent=MS.gene69449.t1 |
chr3.3 | CDS | 92692704 | 92693139 | 92692704 | ID=cds.MS.gene69449.t1;Parent=MS.gene69449.t1 |
chr3.3 | exon | 92691574 | 92691809 | 92691574 | ID=MS.gene69449.t1.exon2;Parent=MS.gene69449.t1 |
chr3.3 | CDS | 92691574 | 92691809 | 92691574 | ID=cds.MS.gene69449.t1;Parent=MS.gene69449.t1 |
chr3.3 | exon | 92691288 | 92691428 | 92691288 | ID=MS.gene69449.t1.exon3;Parent=MS.gene69449.t1 |
chr3.3 | CDS | 92691288 | 92691428 | 92691288 | ID=cds.MS.gene69449.t1;Parent=MS.gene69449.t1 |
chr3.3 | exon | 92690767 | 92691198 | 92690767 | ID=MS.gene69449.t1.exon4;Parent=MS.gene69449.t1 |
chr3.3 | CDS | 92690767 | 92691198 | 92690767 | ID=cds.MS.gene69449.t1;Parent=MS.gene69449.t1 |
chr3.3 | exon | 92690444 | 92690479 | 92690444 | ID=MS.gene69449.t1.exon5;Parent=MS.gene69449.t1 |
chr3.3 | CDS | 92690444 | 92690479 | 92690444 | ID=cds.MS.gene69449.t1;Parent=MS.gene69449.t1 |
Gene Sequence |
Protein sequence |