Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69606.t1 | KEH36214.1 | 92.8 | 417 | 28 | 1 | 1 | 415 | 1 | 417 | 2.70E-221 | 777.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69606.t1 | Q9FMH8 | 48.6 | 399 | 189 | 4 | 26 | 414 | 42 | 434 | 1.3e-102 | 374.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69606.t1 | A0A072V2E9 | 92.8 | 417 | 28 | 1 | 1 | 415 | 1 | 417 | 1.9e-221 | 777.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene063262 | MS.gene69606 | PPI |
MS.gene24440 | MS.gene69606 | PPI |
MS.gene063261 | MS.gene69606 | PPI |
MS.gene38563 | MS.gene69606 | PPI |
MS.gene00463 | MS.gene69606 | PPI |
MS.gene00462 | MS.gene69606 | PPI |
MS.gene012942 | MS.gene69606 | PPI |
MS.gene063260 | MS.gene69606 | PPI |
MS.gene044078 | MS.gene69606 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69606.t1 | MTR_3g112430 | 96.163 | 417 | 14 | 1 | 1 | 415 | 1 | 417 | 0.0 | 835 |
MS.gene69606.t1 | MTR_1g107550 | 51.463 | 410 | 189 | 4 | 12 | 413 | 28 | 435 | 2.99e-142 | 414 |
MS.gene69606.t1 | MTR_1g018840 | 49.173 | 423 | 194 | 7 | 12 | 415 | 23 | 443 | 3.85e-135 | 396 |
MS.gene69606.t1 | MTR_1g018840 | 49.173 | 423 | 194 | 7 | 12 | 415 | 23 | 443 | 3.98e-135 | 395 |
MS.gene69606.t1 | MTR_3g102220 | 47.045 | 440 | 205 | 8 | 2 | 415 | 6 | 443 | 3.28e-132 | 389 |
MS.gene69606.t1 | MTR_2g016180 | 48.037 | 433 | 192 | 8 | 9 | 415 | 19 | 444 | 5.77e-124 | 368 |
MS.gene69606.t1 | MTR_2g016270 | 47.685 | 432 | 180 | 8 | 9 | 415 | 19 | 429 | 2.73e-121 | 360 |
MS.gene69606.t1 | MTR_4g094918 | 48.397 | 343 | 169 | 5 | 9 | 346 | 9 | 348 | 1.28e-116 | 345 |
MS.gene69606.t1 | MTR_3g116080 | 51.335 | 337 | 151 | 5 | 11 | 340 | 18 | 348 | 5.82e-113 | 335 |
MS.gene69606.t1 | MTR_2g075830 | 48.083 | 339 | 155 | 6 | 12 | 339 | 12 | 340 | 1.19e-103 | 311 |
MS.gene69606.t1 | MTR_4g047610 | 49.844 | 321 | 142 | 6 | 28 | 339 | 32 | 342 | 6.98e-103 | 309 |
MS.gene69606.t1 | MTR_3g075390 | 46.591 | 352 | 174 | 4 | 10 | 349 | 5 | 354 | 9.83e-103 | 309 |
MS.gene69606.t1 | MTR_5g022560 | 47.661 | 342 | 155 | 7 | 12 | 339 | 12 | 343 | 1.14e-102 | 308 |
MS.gene69606.t1 | MTR_4g079770 | 48.105 | 343 | 152 | 8 | 12 | 339 | 13 | 344 | 3.02e-102 | 307 |
MS.gene69606.t1 | MTR_4g079440 | 49.351 | 308 | 147 | 5 | 32 | 338 | 44 | 343 | 1.99e-101 | 305 |
MS.gene69606.t1 | MTR_2g090890 | 47.321 | 336 | 162 | 5 | 11 | 340 | 11 | 337 | 7.25e-101 | 303 |
MS.gene69606.t1 | MTR_4g079470 | 50.000 | 314 | 137 | 6 | 35 | 339 | 42 | 344 | 1.34e-100 | 303 |
MS.gene69606.t1 | MTR_4g080700 | 50.654 | 306 | 143 | 4 | 35 | 339 | 41 | 339 | 2.01e-100 | 302 |
MS.gene69606.t1 | MTR_4g079800 | 49.045 | 314 | 140 | 6 | 35 | 339 | 42 | 344 | 9.57e-100 | 301 |
MS.gene69606.t1 | MTR_4g104370 | 47.384 | 344 | 170 | 6 | 12 | 347 | 11 | 351 | 3.72e-99 | 300 |
MS.gene69606.t1 | MTR_4g080730 | 49.673 | 306 | 146 | 3 | 35 | 339 | 41 | 339 | 7.04e-99 | 298 |
MS.gene69606.t1 | MTR_4g107930 | 46.491 | 342 | 159 | 7 | 12 | 339 | 13 | 344 | 2.39e-98 | 297 |
MS.gene69606.t1 | MTR_2g083930 | 45.317 | 331 | 178 | 3 | 11 | 338 | 12 | 342 | 6.11e-97 | 294 |
MS.gene69606.t1 | MTR_4g080360 | 46.471 | 340 | 171 | 5 | 6 | 339 | 7 | 341 | 1.22e-96 | 293 |
MS.gene69606.t1 | MTR_7g079230 | 43.567 | 342 | 163 | 7 | 13 | 339 | 9 | 335 | 9.74e-86 | 265 |
MS.gene69606.t1 | MTR_7g078600 | 46.349 | 315 | 145 | 8 | 31 | 338 | 39 | 336 | 1.14e-85 | 265 |
MS.gene69606.t1 | MTR_4g065077 | 41.783 | 359 | 176 | 10 | 7 | 341 | 9 | 358 | 6.78e-80 | 251 |
MS.gene69606.t1 | MTR_2g015850 | 45.860 | 314 | 160 | 7 | 26 | 338 | 58 | 362 | 3.91e-77 | 243 |
MS.gene69606.t1 | MTR_2g015920 | 40.597 | 335 | 181 | 8 | 21 | 346 | 40 | 365 | 2.86e-76 | 242 |
MS.gene69606.t1 | MTR_2g067900 | 42.988 | 328 | 169 | 10 | 21 | 337 | 3 | 323 | 6.22e-74 | 234 |
MS.gene69606.t1 | MTR_8g086470 | 40.449 | 356 | 169 | 9 | 7 | 341 | 25 | 358 | 3.23e-73 | 233 |
MS.gene69606.t1 | MTR_2g015930 | 41.390 | 331 | 173 | 9 | 21 | 340 | 39 | 359 | 2.53e-72 | 231 |
MS.gene69606.t1 | MTR_4g125300 | 40.061 | 327 | 173 | 10 | 20 | 339 | 38 | 348 | 1.39e-67 | 218 |
MS.gene69606.t1 | MTR_2g064475 | 35.196 | 358 | 184 | 14 | 21 | 339 | 3 | 351 | 6.18e-62 | 204 |
MS.gene69606.t1 | MTR_4g071060 | 38.318 | 321 | 165 | 11 | 34 | 336 | 48 | 353 | 1.47e-60 | 201 |
MS.gene69606.t1 | MTR_2g067560 | 36.812 | 345 | 186 | 11 | 23 | 343 | 5 | 341 | 4.53e-58 | 204 |
MS.gene69606.t1 | MTR_1g023210 | 36.449 | 321 | 172 | 10 | 34 | 336 | 51 | 357 | 3.05e-57 | 192 |
MS.gene69606.t1 | MTR_2g016380 | 50.476 | 210 | 87 | 3 | 222 | 415 | 16 | 224 | 1.16e-56 | 187 |
MS.gene69606.t1 | MTR_2g066980 | 36.170 | 329 | 157 | 11 | 27 | 339 | 27 | 318 | 2.87e-55 | 186 |
MS.gene69606.t1 | MTR_1g094135 | 35.588 | 340 | 176 | 14 | 30 | 345 | 52 | 372 | 5.58e-54 | 184 |
MS.gene69606.t1 | MTR_1g023810 | 43.119 | 218 | 117 | 5 | 123 | 337 | 48 | 261 | 7.07e-51 | 172 |
MS.gene69606.t1 | MTR_4g072790 | 35.922 | 309 | 153 | 11 | 34 | 336 | 48 | 317 | 6.45e-47 | 164 |
MS.gene69606.t1 | MTR_4g073660 | 36.859 | 312 | 150 | 12 | 34 | 336 | 47 | 320 | 1.23e-45 | 160 |
MS.gene69606.t1 | MTR_4g072340 | 36.859 | 312 | 150 | 12 | 34 | 336 | 48 | 321 | 1.56e-45 | 160 |
MS.gene69606.t1 | MTR_7g078630 | 36.879 | 282 | 132 | 7 | 26 | 295 | 698 | 945 | 2.05e-42 | 159 |
MS.gene69606.t1 | MTR_7g078580 | 59.184 | 98 | 38 | 2 | 242 | 338 | 4 | 100 | 3.29e-29 | 110 |
MS.gene69606.t1 | MTR_2g015840 | 48.624 | 109 | 54 | 2 | 232 | 339 | 164 | 271 | 1.17e-27 | 110 |
MS.gene69606.t1 | MTR_2g015840 | 37.600 | 125 | 76 | 1 | 35 | 159 | 34 | 156 | 2.22e-22 | 96.3 |
MS.gene69606.t1 | MTR_1g025450 | 38.150 | 173 | 85 | 5 | 123 | 292 | 54 | 207 | 1.19e-27 | 115 |
MS.gene69606.t1 | MTR_7g079130 | 58.889 | 90 | 36 | 1 | 250 | 338 | 7 | 96 | 8.34e-27 | 103 |
MS.gene69606.t1 | MTR_7g078310 | 31.553 | 206 | 120 | 5 | 17 | 219 | 63 | 250 | 2.61e-21 | 93.2 |
MS.gene69606.t1 | MTR_7g086240 | 53.333 | 75 | 34 | 1 | 30 | 104 | 30 | 103 | 5.15e-20 | 85.1 |
MS.gene69606.t1 | MTR_3g029560 | 32.227 | 211 | 115 | 7 | 135 | 339 | 49 | 237 | 1.56e-18 | 84.7 |
MS.gene69606.t1 | MTR_2g047960 | 43.529 | 85 | 48 | 0 | 134 | 218 | 8 | 92 | 6.42e-17 | 76.3 |
MS.gene69606.t1 | MTR_7g079260 | 47.500 | 80 | 25 | 2 | 266 | 344 | 7 | 70 | 7.84e-15 | 70.5 |
MS.gene69606.t1 | MTR_8g087510 | 36.923 | 130 | 76 | 5 | 165 | 292 | 23 | 148 | 1.06e-14 | 72.0 |
MS.gene69606.t1 | MTR_3g082370 | 26.977 | 215 | 119 | 8 | 126 | 315 | 2 | 203 | 6.82e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69606.t1 | AT1G09850 | 69.565 | 391 | 109 | 2 | 28 | 415 | 26 | 409 | 0.0 | 566 |
MS.gene69606.t1 | AT3G19390 | 50.847 | 413 | 192 | 5 | 8 | 413 | 12 | 420 | 2.24e-140 | 409 |
MS.gene69606.t1 | AT5G43060 | 49.123 | 399 | 187 | 4 | 26 | 414 | 42 | 434 | 7.11e-135 | 395 |
MS.gene69606.t1 | AT1G47128 | 45.727 | 433 | 207 | 5 | 5 | 414 | 6 | 433 | 8.91e-131 | 384 |
MS.gene69606.t1 | AT3G19400 | 52.351 | 319 | 133 | 6 | 33 | 342 | 43 | 351 | 3.63e-115 | 341 |
MS.gene69606.t1 | AT4G35350 | 53.871 | 310 | 139 | 2 | 32 | 341 | 49 | 354 | 6.36e-115 | 340 |
MS.gene69606.t1 | AT1G20850 | 53.548 | 310 | 141 | 2 | 32 | 341 | 49 | 355 | 2.48e-114 | 338 |
MS.gene69606.t1 | AT4G36880 | 52.308 | 325 | 146 | 5 | 29 | 345 | 44 | 367 | 2.66e-114 | 339 |
MS.gene69606.t1 | AT4G23520 | 50.000 | 350 | 155 | 9 | 7 | 342 | 9 | 352 | 1.68e-108 | 324 |
MS.gene69606.t1 | AT3G48340 | 47.458 | 354 | 170 | 4 | 9 | 348 | 1 | 352 | 2.22e-104 | 313 |
MS.gene69606.t1 | AT3G48350 | 47.159 | 352 | 176 | 6 | 1 | 345 | 1 | 349 | 3.26e-103 | 310 |
MS.gene69606.t1 | AT4G11320 | 48.750 | 320 | 150 | 6 | 29 | 342 | 51 | 362 | 6.61e-102 | 307 |
MS.gene69606.t1 | AT4G11320 | 48.750 | 320 | 150 | 6 | 29 | 342 | 51 | 362 | 6.61e-102 | 307 |
MS.gene69606.t1 | AT4G11310 | 48.428 | 318 | 154 | 5 | 29 | 342 | 44 | 355 | 1.05e-101 | 306 |
MS.gene69606.t1 | AT2G27420 | 45.042 | 353 | 157 | 8 | 13 | 338 | 4 | 346 | 3.16e-99 | 300 |
MS.gene69606.t1 | AT5G50260 | 45.690 | 348 | 179 | 4 | 7 | 346 | 4 | 349 | 3.69e-99 | 300 |
MS.gene69606.t1 | AT5G45890 | 44.638 | 345 | 171 | 6 | 6 | 339 | 10 | 345 | 1.62e-98 | 298 |
MS.gene69606.t1 | AT3G49340 | 46.746 | 338 | 164 | 7 | 14 | 338 | 5 | 339 | 8.36e-96 | 291 |
MS.gene69606.t1 | AT1G06260 | 49.026 | 308 | 149 | 5 | 34 | 340 | 43 | 343 | 2.48e-94 | 287 |
MS.gene69606.t1 | AT2G34080 | 40.974 | 349 | 181 | 7 | 8 | 339 | 4 | 344 | 4.19e-87 | 268 |
MS.gene69606.t1 | AT1G29090 | 41.061 | 358 | 185 | 8 | 3 | 339 | 2 | 354 | 1.00e-84 | 263 |
MS.gene69606.t1 | AT1G29080 | 42.718 | 309 | 170 | 5 | 35 | 339 | 40 | 345 | 4.42e-84 | 261 |
MS.gene69606.t1 | AT3G43960 | 44.615 | 325 | 166 | 10 | 33 | 350 | 40 | 357 | 6.13e-84 | 261 |
MS.gene69606.t1 | AT3G19400 | 51.626 | 246 | 100 | 6 | 33 | 269 | 43 | 278 | 1.75e-80 | 249 |
MS.gene69606.t1 | AT4G35350 | 51.029 | 243 | 114 | 3 | 32 | 274 | 49 | 286 | 1.83e-80 | 249 |
MS.gene69606.t1 | AT1G29110 | 38.053 | 339 | 192 | 5 | 6 | 339 | 8 | 333 | 4.08e-73 | 232 |
MS.gene69606.t1 | AT3G48350 | 45.357 | 280 | 144 | 5 | 1 | 274 | 1 | 277 | 1.78e-70 | 224 |
MS.gene69606.t1 | AT5G60360 | 39.809 | 314 | 165 | 9 | 34 | 339 | 59 | 356 | 4.83e-65 | 212 |
MS.gene69606.t1 | AT3G45310 | 41.083 | 314 | 161 | 9 | 34 | 339 | 59 | 356 | 5.67e-65 | 212 |
MS.gene69606.t1 | AT3G45310 | 40.764 | 314 | 161 | 9 | 34 | 339 | 59 | 355 | 9.64e-63 | 206 |
MS.gene69606.t1 | AT5G60360 | 39.490 | 314 | 165 | 10 | 34 | 339 | 59 | 355 | 1.71e-62 | 206 |
MS.gene69606.t1 | AT5G60360 | 40.273 | 293 | 155 | 8 | 34 | 318 | 59 | 339 | 8.13e-62 | 204 |
MS.gene69606.t1 | AT4G39090 | 37.798 | 336 | 174 | 11 | 24 | 341 | 44 | 362 | 8.69e-61 | 201 |
MS.gene69606.t1 | AT3G54940 | 37.048 | 332 | 178 | 11 | 30 | 342 | 47 | 366 | 5.73e-60 | 199 |
MS.gene69606.t1 | AT2G21430 | 38.576 | 337 | 172 | 12 | 24 | 342 | 41 | 360 | 1.18e-59 | 198 |
MS.gene69606.t1 | AT4G16190 | 36.236 | 356 | 186 | 12 | 16 | 345 | 32 | 372 | 1.95e-55 | 187 |
MS.gene69606.t1 | AT3G54940 | 35.319 | 235 | 139 | 4 | 30 | 256 | 47 | 276 | 9.09e-41 | 146 |
MS.gene69606.t1 | AT4G01610 | 28.852 | 305 | 173 | 16 | 56 | 331 | 41 | 330 | 1.75e-17 | 84.0 |
MS.gene69606.t1 | AT4G01610 | 28.197 | 305 | 175 | 16 | 56 | 331 | 41 | 330 | 1.21e-15 | 78.2 |
MS.gene69606.t1 | AT1G02300 | 26.577 | 222 | 133 | 9 | 143 | 340 | 146 | 361 | 3.37e-11 | 65.1 |
Find 112 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGACCATGTTCAACTTATT+TGG | 0.109517 | 3.3:-92703734 | MS.gene69606:CDS |
CCTTGTTGTCAATGATAAAT+TGG | 0.219943 | 3.3:+92704205 | None:intergenic |
GGAGGTGGGACAGGAGGATT+GGG | 0.228778 | 3.3:+92703532 | None:intergenic |
CGGAAAACGGAGTAGATTAT+TGG | 0.260874 | 3.3:-92703681 | MS.gene69606:CDS |
CGAATTGTTGATCTTCAATA+TGG | 0.262283 | 3.3:+92705360 | None:intergenic |
CTCTAATCATACAGTTAAAA+AGG | 0.286687 | 3.3:-92703989 | MS.gene69606:intron |
ACATATTCCAAGAAATTTCT+TGG | 0.288831 | 3.3:+92703447 | None:intergenic |
AGGCGTGTTGTTACGATTGA+TGG | 0.304945 | 3.3:-92703969 | MS.gene69606:CDS |
TGTTGTGCCAAGAAATTTCT+TGG | 0.305181 | 3.3:-92703454 | MS.gene69606:CDS |
AGGAGGATTGGGGCTGGTCT+TGG | 0.309200 | 3.3:+92703543 | None:intergenic |
AAAATTCTTGGGGAAAATCT+TGG | 0.324006 | 3.3:-92703651 | MS.gene69606:CDS |
CGGAAGAGGAAAAGCATTAC+AGG | 0.334307 | 3.3:-92705547 | MS.gene69606:CDS |
TGGAGGTGGGACAGGAGGAT+TGG | 0.334659 | 3.3:+92703531 | None:intergenic |
AAGCTCCTTCTGAGATTGAT+TGG | 0.339906 | 3.3:-92705319 | MS.gene69606:CDS |
CCGCATATGCCTACGCTAAC+AGG | 0.347930 | 3.3:+92703888 | None:intergenic |
AAATTCTTGGGGAAAATCTT+GGG | 0.360195 | 3.3:-92703650 | MS.gene69606:CDS |
GATCAACAATTCGATGATAA+TGG | 0.365773 | 3.3:-92705350 | MS.gene69606:CDS |
CACCTCCACCAGGTCCTATA+AGG | 0.367239 | 3.3:-92703516 | MS.gene69606:CDS |
GTAAACAAATTACACCTTAT+AGG | 0.367395 | 3.3:+92703502 | None:intergenic |
TTCTTGGAATATGTTTCTCT+TGG | 0.370661 | 3.3:-92703438 | MS.gene69606:CDS |
CATGTTGTTTGCTCCACTCT+TGG | 0.376144 | 3.3:+92705585 | None:intergenic |
TGTCTCACAACACAATCAAA+TGG | 0.386774 | 3.3:-92705495 | MS.gene69606:CDS |
GAAGAAAGGGAAACAATTCA+TGG | 0.396707 | 3.3:+92705688 | None:intergenic |
TAATTTCAGGGTATCTTCAC+TGG | 0.406924 | 3.3:-92703754 | MS.gene69606:intron |
AGGAAGGAGCCAATGTCTTA+AGG | 0.410638 | 3.3:-92703335 | None:intergenic |
GCAGTGTTGATTGTAGGATA+TGG | 0.413085 | 3.3:-92703706 | MS.gene69606:CDS |
GGACCTGGTGGAGGTGGGAC+AGG | 0.431037 | 3.3:+92703523 | None:intergenic |
GACGAGTGGTCTTGAATTCA+TGG | 0.438570 | 3.3:+92705423 | None:intergenic |
CTCCTTCCTGTGTCGCAAAT+CGG | 0.440855 | 3.3:+92703349 | None:intergenic |
TGCGATAGAACTTATAATAG+TGG | 0.441166 | 3.3:-92704258 | MS.gene69606:CDS |
GAGCCTTTCTGAACAAGAAC+TGG | 0.441747 | 3.3:-92704286 | MS.gene69606:CDS |
AACAAGTACCACAGCTTCCT+TGG | 0.449023 | 3.3:+92705264 | None:intergenic |
GCTCAACCTTTGAGTATAGC+TGG | 0.455156 | 3.3:+92703850 | None:intergenic |
AACTTCTGCCGTATGTTGTA+AGG | 0.456184 | 3.3:-92703401 | MS.gene69606:CDS |
GGGATAAATAAAATTGTGAC+AGG | 0.462626 | 3.3:-92704318 | MS.gene69606:CDS |
GTCTCACAACACAATCAAAT+GGG | 0.464045 | 3.3:-92705494 | MS.gene69606:CDS |
TGGGACAGGAGGATTGGGGC+TGG | 0.464785 | 3.3:+92703537 | None:intergenic |
GTTGAGGGAGAGGGTATAAC+TGG | 0.464837 | 3.3:+92705466 | None:intergenic |
GACAATTCTGCCGGGTTATG+TGG | 0.469503 | 3.3:-92703592 | MS.gene69606:CDS |
CTTATAGGACCTGGTGGAGG+TGG | 0.469543 | 3.3:+92703517 | None:intergenic |
GGAAAATCTTGGGGAATGAA+TGG | 0.472095 | 3.3:-92703640 | MS.gene69606:CDS |
AGACAAAAGCATAATTGTCT+TGG | 0.473308 | 3.3:+92705513 | None:intergenic |
TTGAATCTTAACAACGAAGA+AGG | 0.474141 | 3.3:+92705389 | None:intergenic |
AAGAATCGTAAAATGAAGAA+AGG | 0.479815 | 3.3:+92705674 | None:intergenic |
GAATTCAAGACCACTCGTCT+TGG | 0.484353 | 3.3:-92705419 | MS.gene69606:CDS |
GTAGGATATGGTTCGGAAAA+CGG | 0.484771 | 3.3:-92703694 | MS.gene69606:CDS |
GACCATGCAGTGTTGATTGT+AGG | 0.492425 | 3.3:-92703712 | MS.gene69606:CDS |
GTTGATTGTAGGATATGGTT+CGG | 0.492801 | 3.3:-92703701 | MS.gene69606:CDS |
CCTCCTGTCCCACCTCCACC+AGG | 0.493624 | 3.3:-92703526 | MS.gene69606:CDS |
CGAAACACTGACAATTCTGC+CGG | 0.494025 | 3.3:-92703601 | MS.gene69606:CDS |
CTGCGAAAGCGTTGAGGGAG+AGG | 0.496556 | 3.3:+92705456 | None:intergenic |
GGATTGGGGCTGGTCTTGGT+TGG | 0.499898 | 3.3:+92703547 | None:intergenic |
ACATGGCAAAACATACTCTT+CGG | 0.504448 | 3.3:-92705567 | MS.gene69606:CDS |
GAGGTGGGACAGGAGGATTG+GGG | 0.504545 | 3.3:+92703533 | None:intergenic |
TATATTATGCAGGTGCTTGT+TGG | 0.506019 | 3.3:-92704368 | MS.gene69606:intron |
CTACCAGTTCTTGTTCAGAA+AGG | 0.514862 | 3.3:+92704283 | None:intergenic |
GAAGAGTTTAGAAGTGTCGT+TGG | 0.523076 | 3.3:+92705607 | None:intergenic |
AAGATCTGCGAAAGCGTTGA+GGG | 0.523858 | 3.3:+92705451 | None:intergenic |
TCGGCTACCGGCGCTATCGA+AGG | 0.524156 | 3.3:-92704339 | MS.gene69606:CDS |
AGTAGTTGACGACTTTGATA+CGG | 0.524727 | 3.3:+92704159 | None:intergenic |
TTGATACGGGTAATCTTCCT+CGG | 0.528900 | 3.3:+92704173 | None:intergenic |
AGAATCGTAAAATGAAGAAA+GGG | 0.533049 | 3.3:+92705675 | None:intergenic |
TGGTTGTGATGGTGGACTCA+TGG | 0.533089 | 3.3:-92704238 | MS.gene69606:CDS |
GAGTTTAGAAGTGTCGTTGG+AGG | 0.544087 | 3.3:+92705610 | None:intergenic |
AATTTATCATTGACAACAAG+GGG | 0.547366 | 3.3:-92704203 | MS.gene69606:CDS |
CAAAACATACTCTTCGGAAG+AGG | 0.547389 | 3.3:-92705561 | MS.gene69606:CDS |
GGCTTTCCAGCTATACTCAA+AGG | 0.552750 | 3.3:-92703856 | MS.gene69606:intron |
GATTATCCGATTTGCGACAC+AGG | 0.554458 | 3.3:-92703355 | MS.gene69606:CDS |
GTAGTTGACGACTTTGATAC+GGG | 0.555441 | 3.3:+92704160 | None:intergenic |
TAGGCATATGCGGTAGTGCA+AGG | 0.556213 | 3.3:-92703878 | MS.gene69606:CDS |
CCTGGTGGAGGTGGGACAGG+AGG | 0.556666 | 3.3:+92703526 | None:intergenic |
AATTCTTGGGGAAAATCTTG+GGG | 0.568100 | 3.3:-92703649 | MS.gene69606:CDS |
CCAATTTATCATTGACAACA+AGG | 0.568474 | 3.3:-92704205 | MS.gene69606:CDS |
ACGCTTATCCTTACAACATA+CGG | 0.573675 | 3.3:+92703393 | None:intergenic |
CGGCTACCGGCGCTATCGAA+GGG | 0.573864 | 3.3:-92704338 | MS.gene69606:CDS |
TGTTTACTTACTGTTCAAGA+GGG | 0.575277 | 3.3:-92703486 | MS.gene69606:CDS |
TTTCTCCAATCAATCTCAGA+AGG | 0.577692 | 3.3:+92705314 | None:intergenic |
TTGTTTACTTACTGTTCAAG+AGG | 0.582368 | 3.3:-92703487 | MS.gene69606:CDS |
CATGTTGATTCCACATAACC+CGG | 0.585499 | 3.3:+92703582 | None:intergenic |
ATCCGATTTGCGACACAGGA+AGG | 0.586995 | 3.3:-92703351 | MS.gene69606:CDS |
TATAATAGTGGTTGTGATGG+TGG | 0.587393 | 3.3:-92704246 | MS.gene69606:CDS |
CCTGTTAGCGTAGGCATATG+CGG | 0.590888 | 3.3:-92703888 | MS.gene69606:CDS |
CTTCTAAACTCTTCCAAGAG+TGG | 0.597993 | 3.3:-92705598 | MS.gene69606:CDS |
TGCGAAAGCGTTGAGGGAGA+GGG | 0.599343 | 3.3:+92705457 | None:intergenic |
TCGTACAAACCTTAAGACAT+TGG | 0.602539 | 3.3:+92703326 | None:intergenic |
CAATTTATCATTGACAACAA+GGG | 0.603160 | 3.3:-92704204 | MS.gene69606:CDS |
ATCCTACAATCAACACTGCA+TGG | 0.609724 | 3.3:+92703710 | None:intergenic |
TAAGATCTGCGAAAGCGTTG+AGG | 0.611274 | 3.3:+92705450 | None:intergenic |
CAAGAGTGGAGCAAACAACA+TGG | 0.613878 | 3.3:-92705584 | MS.gene69606:CDS |
TTATAGGACCTGGTGGAGGT+GGG | 0.616742 | 3.3:+92703518 | None:intergenic |
GTCAAAGACCAAGGAAGCTG+TGG | 0.619485 | 3.3:-92705272 | MS.gene69606:intron |
GAAACACTGACAATTCTGCC+GGG | 0.620961 | 3.3:-92703600 | MS.gene69606:CDS |
GCAGTCCAACCTGTTAGCGT+AGG | 0.624437 | 3.3:-92703897 | MS.gene69606:CDS |
AGGCATATGCGGTAGTGCAA+GGG | 0.627713 | 3.3:-92703877 | MS.gene69606:CDS |
CACCTTATAGGACCTGGTGG+AGG | 0.632080 | 3.3:+92703514 | None:intergenic |
ATTTATCCCTTCGATAGCGC+CGG | 0.633443 | 3.3:+92704332 | None:intergenic |
AGTGGTCTTGAATTCATGGT+GGG | 0.644824 | 3.3:+92705427 | None:intergenic |
AAATTACACCTTATAGGACC+TGG | 0.645003 | 3.3:+92703508 | None:intergenic |
ACTTATAATAGTGGTTGTGA+TGG | 0.645070 | 3.3:-92704249 | MS.gene69606:CDS |
GTTTACTTACTGTTCAAGAG+GGG | 0.646992 | 3.3:-92703485 | MS.gene69606:CDS |
AGGTGAAAAGCCAAGACGAG+TGG | 0.648629 | 3.3:+92705409 | None:intergenic |
GAGATTGATTGGAGAAAGAG+TGG | 0.655370 | 3.3:-92705308 | MS.gene69606:CDS |
TGTTTCTCTTGGAAATGCTG+TGG | 0.659910 | 3.3:-92703427 | MS.gene69606:CDS |
GTTACTTCTGTCAAAGACCA+AGG | 0.660559 | 3.3:-92705281 | MS.gene69606:CDS |
TCGCAAATCGGATAATCTAG+AGG | 0.660600 | 3.3:+92703361 | None:intergenic |
TGGTCCAAATAAGTTGAACA+TGG | 0.672306 | 3.3:+92703730 | None:intergenic |
TGAATGGATACATACACATG+TGG | 0.673377 | 3.3:-92703624 | MS.gene69606:CDS |
TTACACCTTATAGGACCTGG+TGG | 0.678738 | 3.3:+92703511 | None:intergenic |
ATATGCCTACGCTAACAGGT+TGG | 0.685295 | 3.3:+92703892 | None:intergenic |
GAGTGGTCTTGAATTCATGG+TGG | 0.700858 | 3.3:+92705426 | None:intergenic |
GGATAAATAAAATTGTGACA+GGG | 0.732911 | 3.3:-92704317 | MS.gene69606:CDS |
CAACAAGGGGATTGACACCG+AGG | 0.745272 | 3.3:-92704190 | MS.gene69606:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATAATAAAAAAAATTATA+AGG | - | chr3.3:92703977-92703996 | MS.gene69606:CDS | 0.0% |
!! | TAATATACATAGAATATTAT+TGG | + | chr3.3:92704641-92704660 | None:intergenic | 10.0% |
!! | TTAATAATCAAATTTGAAAA+GGG | - | chr3.3:92703847-92703866 | MS.gene69606:intron | 10.0% |
!! | GTTAATAATCAAATTTGAAA+AGG | - | chr3.3:92703846-92703865 | MS.gene69606:intron | 15.0% |
!! | TTTATAAAGATGTTAAATGA+GGG | - | chr3.3:92704279-92704298 | MS.gene69606:CDS | 15.0% |
!!! | TTCTTCTTATTTTAATTTCA+GGG | - | chr3.3:92705256-92705275 | MS.gene69606:intron | 15.0% |
!! | ACTACTAATACAAACTATAA+CGG | + | chr3.3:92704144-92704163 | None:intergenic | 20.0% |
!! | ATAGATTGATGTTTAATACT+TGG | - | chr3.3:92704023-92704042 | MS.gene69606:intron | 20.0% |
!! | ATATTCTATGTATATTATGC+AGG | - | chr3.3:92704644-92704663 | MS.gene69606:intron | 20.0% |
!! | ATTGGATTGTAAAAAATTCT+TGG | - | chr3.3:92705359-92705378 | MS.gene69606:CDS | 20.0% |
!! | GTTTATAAAGATGTTAAATG+AGG | - | chr3.3:92704278-92704297 | MS.gene69606:CDS | 20.0% |
!! | TAGATTGATGTTTAATACTT+GGG | - | chr3.3:92704024-92704043 | MS.gene69606:intron | 20.0% |
!! | TTCAACTACAATAAGTATTT+AGG | - | chr3.3:92704211-92704230 | MS.gene69606:CDS | 20.0% |
!! | TTGGATTGTAAAAAATTCTT+GGG | - | chr3.3:92705360-92705379 | MS.gene69606:CDS | 20.0% |
!!! | GTTCTTCTTATTTTAATTTC+AGG | - | chr3.3:92705255-92705274 | MS.gene69606:intron | 20.0% |
! | AAGAATCGTAAAATGAAGAA+AGG | + | chr3.3:92703351-92703370 | None:intergenic | 25.0% |
! | AATTTATCATTGACAACAAG+GGG | - | chr3.3:92704819-92704838 | MS.gene69606:intron | 25.0% |
! | ACATATTCCAAGAAATTTCT+TGG | + | chr3.3:92705578-92705597 | None:intergenic | 25.0% |
! | AGAATCGTAAAATGAAGAAA+GGG | + | chr3.3:92703350-92703369 | None:intergenic | 25.0% |
! | AGATTGATGTTTAATACTTG+GGG | - | chr3.3:92704025-92704044 | MS.gene69606:intron | 25.0% |
! | ATAATCAAATTTGAAAAGGG+TGG | - | chr3.3:92703850-92703869 | MS.gene69606:intron | 25.0% |
! | ATGGTCAATATTAGTAACAT+AGG | - | chr3.3:92705198-92705217 | MS.gene69606:intron | 25.0% |
! | CAATTTATCATTGACAACAA+GGG | - | chr3.3:92704818-92704837 | MS.gene69606:intron | 25.0% |
! | CTCTAATCATACAGTTAAAA+AGG | - | chr3.3:92705033-92705052 | MS.gene69606:intron | 25.0% |
! | GGATAAATAAAATTGTGACA+GGG | - | chr3.3:92704705-92704724 | MS.gene69606:intron | 25.0% |
! | GTAAACAAATTACACCTTAT+AGG | + | chr3.3:92705523-92705542 | None:intergenic | 25.0% |
! | GTATTAGTAGTAGATATTTG+AGG | - | chr3.3:92704153-92704172 | MS.gene69606:CDS | 25.0% |
! | TAATCAAATTTGAAAAGGGT+GGG | - | chr3.3:92703851-92703870 | MS.gene69606:intron | 25.0% |
! | TGGATTGTAAAAAATTCTTG+GGG | - | chr3.3:92705361-92705380 | MS.gene69606:CDS | 25.0% |
!! | AACAATTTCTTTTGCATTAG+AGG | + | chr3.3:92704065-92704084 | None:intergenic | 25.0% |
!!! | AGGCTTGTTTTTATGTTTTT+AGG | - | chr3.3:92704252-92704271 | MS.gene69606:CDS | 25.0% |
!!! | CTTTTTAACTGTATGATTAG+AGG | + | chr3.3:92705035-92705054 | None:intergenic | 25.0% |
!!! | TGCTTTATTTCTTTAAGCAT+TGG | - | chr3.3:92704580-92704599 | MS.gene69606:intron | 25.0% |
AAAATTCTTGGGGAAAATCT+TGG | - | chr3.3:92705371-92705390 | MS.gene69606:CDS | 30.0% | |
AAATTCTTGGGGAAAATCTT+GGG | - | chr3.3:92705372-92705391 | MS.gene69606:CDS | 30.0% | |
ACTACTTTGCAAAAAAGACA+AGG | - | chr3.3:92704880-92704899 | MS.gene69606:intron | 30.0% | |
ACTTATAATAGTGGTTGTGA+TGG | - | chr3.3:92704773-92704792 | MS.gene69606:intron | 30.0% | |
CCAATTTATCATTGACAACA+AGG | - | chr3.3:92704817-92704836 | MS.gene69606:intron | 30.0% | |
CGAATTGTTGATCTTCAATA+TGG | + | chr3.3:92703665-92703684 | None:intergenic | 30.0% | |
GATCAACAATTCGATGATAA+TGG | - | chr3.3:92703672-92703691 | MS.gene69606:CDS | 30.0% | |
GATTGATGTTTAATACTTGG+GGG | - | chr3.3:92704026-92704045 | MS.gene69606:intron | 30.0% | |
GGGATAAATAAAATTGTGAC+AGG | - | chr3.3:92704704-92704723 | MS.gene69606:intron | 30.0% | |
TGACGAGAAAAAACTACTAA+AGG | - | chr3.3:92705097-92705116 | MS.gene69606:intron | 30.0% | |
TGCGATAGAACTTATAATAG+TGG | - | chr3.3:92704764-92704783 | MS.gene69606:intron | 30.0% | |
TGCTGTCAAAATATCATTTC+TGG | + | chr3.3:92704336-92704355 | None:intergenic | 30.0% | |
TGTTTACTTACTGTTCAAGA+GGG | - | chr3.3:92705536-92705555 | MS.gene69606:CDS | 30.0% | |
TTCTTGGAATATGTTTCTCT+TGG | - | chr3.3:92705584-92705603 | MS.gene69606:CDS | 30.0% | |
TTGAATCTTAACAACGAAGA+AGG | + | chr3.3:92703636-92703655 | None:intergenic | 30.0% | |
TTGTTTACTTACTGTTCAAG+AGG | - | chr3.3:92705535-92705554 | MS.gene69606:CDS | 30.0% | |
! | AGACAAAAGCATAATTGTCT+TGG | + | chr3.3:92703512-92703531 | None:intergenic | 30.0% |
! | CCTTGTTGTCAATGATAAAT+TGG | + | chr3.3:92704820-92704839 | None:intergenic | 30.0% |
!! | AGACAGCTTATTAGTTTGTA+AGG | - | chr3.3:92703904-92703923 | MS.gene69606:CDS | 30.0% |
!! | AGCTTATTAGTTTGTAAGGT+GGG | - | chr3.3:92703908-92703927 | MS.gene69606:CDS | 30.0% |
!! | GTGTTGGGTGTATTTTTATA+TGG | - | chr3.3:92704438-92704457 | MS.gene69606:intron | 30.0% |
!!! | AGTAGTTTTTTCTCGTCATT+TGG | + | chr3.3:92705095-92705114 | None:intergenic | 30.0% |
AAATTACACCTTATAGGACC+TGG | + | chr3.3:92705517-92705536 | None:intergenic | 35.0% | |
AATTCTTGGGGAAAATCTTG+GGG | - | chr3.3:92705373-92705392 | MS.gene69606:CDS | 35.0% | |
ACATGGCAAAACATACTCTT+CGG | - | chr3.3:92703455-92703474 | MS.gene69606:CDS | 35.0% | |
ACGCTTATCCTTACAACATA+CGG | + | chr3.3:92705632-92705651 | None:intergenic | 35.0% | |
ACTGCATCATTATACACTGT+CGG | + | chr3.3:92704369-92704388 | None:intergenic | 35.0% | |
AGTAGTTGACGACTTTGATA+CGG | + | chr3.3:92704866-92704885 | None:intergenic | 35.0% | |
GTAGTTGAAAAGCTTCCATA+GGG | + | chr3.3:92704200-92704219 | None:intergenic | 35.0% | |
GTCTCACAACACAATCAAAT+GGG | - | chr3.3:92703528-92703547 | MS.gene69606:CDS | 35.0% | |
GTTGATTGTAGGATATGGTT+CGG | - | chr3.3:92705321-92705340 | MS.gene69606:CDS | 35.0% | |
GTTTACTTACTGTTCAAGAG+GGG | - | chr3.3:92705537-92705556 | MS.gene69606:CDS | 35.0% | |
TAACTGTATGATTAGAGGTG+AGG | + | chr3.3:92705030-92705049 | None:intergenic | 35.0% | |
TATAATAGTGGTTGTGATGG+TGG | - | chr3.3:92704776-92704795 | MS.gene69606:intron | 35.0% | |
TATATTATGCAGGTGCTTGT+TGG | - | chr3.3:92704654-92704673 | MS.gene69606:intron | 35.0% | |
TGAATGGATACATACACATG+TGG | - | chr3.3:92705398-92705417 | MS.gene69606:CDS | 35.0% | |
TGCAAATTCGCAACAGTAAT+TGG | + | chr3.3:92705228-92705247 | None:intergenic | 35.0% | |
TGGACCATGTTCAACTTATT+TGG | - | chr3.3:92705288-92705307 | MS.gene69606:CDS | 35.0% | |
TGTAGTTGAAAAGCTTCCAT+AGG | + | chr3.3:92704201-92704220 | None:intergenic | 35.0% | |
TGTCTCACAACACAATCAAA+TGG | - | chr3.3:92703527-92703546 | MS.gene69606:CDS | 35.0% | |
TGTTGTGCCAAGAAATTTCT+TGG | - | chr3.3:92705568-92705587 | MS.gene69606:CDS | 35.0% | |
TTAGATAAGCTTCTACCCTA+TGG | - | chr3.3:92704182-92704201 | MS.gene69606:CDS | 35.0% | |
TTTCTCCAATCAATCTCAGA+AGG | + | chr3.3:92703711-92703730 | None:intergenic | 35.0% | |
! | AAACAAGCCTTTTCATCATG+AGG | + | chr3.3:92704242-92704261 | None:intergenic | 35.0% |
! | CATAAGTTGAGAACAAGTTG+AGG | + | chr3.3:92704514-92704533 | None:intergenic | 35.0% |
! | GGTTTTACCTCATGATGAAA+AGG | - | chr3.3:92704232-92704251 | MS.gene69606:CDS | 35.0% |
! | TAATTTCAGGGTATCTTCAC+TGG | - | chr3.3:92705268-92705287 | MS.gene69606:intron | 35.0% |
! | TGGTCCAAATAAGTTGAACA+TGG | + | chr3.3:92705295-92705314 | None:intergenic | 35.0% |
! | TTTTTCTCGCTATCCTAGTT+AGG | - | chr3.3:92704406-92704425 | MS.gene69606:intron | 35.0% |
!! | CAGCTTATTAGTTTGTAAGG+TGG | - | chr3.3:92703907-92703926 | MS.gene69606:CDS | 35.0% |
!! | GCTTATTAGTTTGTAAGGTG+GGG | - | chr3.3:92703909-92703928 | MS.gene69606:CDS | 35.0% |
!!! | AGTTTTTTCTCGTCATTTGG+AGG | + | chr3.3:92705092-92705111 | None:intergenic | 35.0% |
AACTTCTGCCGTATGTTGTA+AGG | - | chr3.3:92705621-92705640 | MS.gene69606:CDS | 40.0% | |
AAGGTGGGGTTATGTGAATT+GGG | - | chr3.3:92703923-92703942 | MS.gene69606:CDS | 40.0% | |
ATCCTACAATCAACACTGCA+TGG | + | chr3.3:92705315-92705334 | None:intergenic | 40.0% | |
ATGGTGTACACGTACAATGT+CGG | - | chr3.3:92704457-92704476 | MS.gene69606:intron | 40.0% | |
CAAAACATACTCTTCGGAAG+AGG | - | chr3.3:92703461-92703480 | MS.gene69606:CDS | 40.0% | |
CGGAAAACGGAGTAGATTAT+TGG | - | chr3.3:92705341-92705360 | MS.gene69606:CDS | 40.0% | |
CTACCAGTTCTTGTTCAGAA+AGG | + | chr3.3:92704742-92704761 | None:intergenic | 40.0% | |
CTTCTAAACTCTTCCAAGAG+TGG | - | chr3.3:92703424-92703443 | MS.gene69606:CDS | 40.0% | |
GAGATTGATTGGAGAAAGAG+TGG | - | chr3.3:92703714-92703733 | MS.gene69606:CDS | 40.0% | |
GGAAAATCTTGGGGAATGAA+TGG | - | chr3.3:92705382-92705401 | MS.gene69606:CDS | 40.0% | |
GGAGCTTATGAGAAAATGTG+AGG | - | chr3.3:92704300-92704319 | MS.gene69606:CDS | 40.0% | |
GTAGTTGACGACTTTGATAC+GGG | + | chr3.3:92704865-92704884 | None:intergenic | 40.0% | |
GTTACTTCTGTCAAAGACCA+AGG | - | chr3.3:92703741-92703760 | MS.gene69606:CDS | 40.0% | |
TAAGGTGGGGTTATGTGAAT+TGG | - | chr3.3:92703922-92703941 | MS.gene69606:CDS | 40.0% | |
TAATACTTGGGGGACATAGA+AGG | - | chr3.3:92704036-92704055 | MS.gene69606:intron | 40.0% | |
TACTCAAAGGTTGAGCTCAA+TGG | - | chr3.3:92705179-92705198 | MS.gene69606:intron | 40.0% | |
TCGCAAATCGGATAATCTAG+AGG | + | chr3.3:92705664-92705683 | None:intergenic | 40.0% | |
TGTTTCTCTTGGAAATGCTG+TGG | - | chr3.3:92705595-92705614 | MS.gene69606:CDS | 40.0% | |
TTGATACGGGTAATCTTCCT+CGG | + | chr3.3:92704852-92704871 | None:intergenic | 40.0% | |
! | AGTGGTCTTGAATTCATGGT+GGG | + | chr3.3:92703598-92703617 | None:intergenic | 40.0% |
! | GTAGGATATGGTTCGGAAAA+CGG | - | chr3.3:92705328-92705347 | MS.gene69606:CDS | 40.0% |
!! | AAGCTCCTTCTGAGATTGAT+TGG | - | chr3.3:92703703-92703722 | MS.gene69606:CDS | 40.0% |
!! | AGGTGCTTGTTGGTCATTTT+CGG | - | chr3.3:92704664-92704683 | MS.gene69606:intron | 40.0% |
!! | CATGTTGATTCCACATAACC+CGG | + | chr3.3:92705443-92705462 | None:intergenic | 40.0% |
!! | GAAGAGTTTAGAAGTGTCGT+TGG | + | chr3.3:92703418-92703437 | None:intergenic | 40.0% |
!! | GCAGTGTTGATTGTAGGATA+TGG | - | chr3.3:92705316-92705335 | MS.gene69606:CDS | 40.0% |
AACAAGTACCACAGCTTCCT+TGG | + | chr3.3:92703761-92703780 | None:intergenic | 45.0% | |
ACACAATTGCCGACCTAACT+AGG | + | chr3.3:92704422-92704441 | None:intergenic | 45.0% | |
AGTTAGGTCGGCAATTGTGT+TGG | - | chr3.3:92704422-92704441 | MS.gene69606:intron | 45.0% | |
ATATGCCTACGCTAACAGGT+TGG | + | chr3.3:92705133-92705152 | None:intergenic | 45.0% | |
ATTTATCCCTTCGATAGCGC+CGG | + | chr3.3:92704693-92704712 | None:intergenic | 45.0% | |
CAAGAGTGGAGCAAACAACA+TGG | - | chr3.3:92703438-92703457 | MS.gene69606:CDS | 45.0% | |
CGAAACACTGACAATTCTGC+CGG | - | chr3.3:92705421-92705440 | MS.gene69606:CDS | 45.0% | |
GAAACACTGACAATTCTGCC+GGG | - | chr3.3:92705422-92705441 | MS.gene69606:CDS | 45.0% | |
GAATTCAAGACCACTCGTCT+TGG | - | chr3.3:92703603-92703622 | MS.gene69606:CDS | 45.0% | |
GAGCCTTTCTGAACAAGAAC+TGG | - | chr3.3:92704736-92704755 | MS.gene69606:intron | 45.0% | |
GCTCAACCTTTGAGTATAGC+TGG | + | chr3.3:92705175-92705194 | None:intergenic | 45.0% | |
GGCTTTCCAGCTATACTCAA+AGG | - | chr3.3:92705166-92705185 | MS.gene69606:intron | 45.0% | |
GTTAGGTCGGCAATTGTGTT+GGG | - | chr3.3:92704423-92704442 | MS.gene69606:intron | 45.0% | |
TCTCGCTATCCTAGTTAGGT+CGG | - | chr3.3:92704410-92704429 | MS.gene69606:intron | 45.0% | |
TGGGGTTATGTGAATTGGGA+TGG | - | chr3.3:92703927-92703946 | MS.gene69606:CDS | 45.0% | |
TGGTGTACACGTACAATGTC+GGG | - | chr3.3:92704458-92704477 | MS.gene69606:intron | 45.0% | |
TTACACCTTATAGGACCTGG+TGG | + | chr3.3:92705514-92705533 | None:intergenic | 45.0% | |
! | AGGCGTGTTGTTACGATTGA+TGG | - | chr3.3:92705053-92705072 | MS.gene69606:intron | 45.0% |
! | CATGTTGTTTGCTCCACTCT+TGG | + | chr3.3:92703440-92703459 | None:intergenic | 45.0% |
! | GACGAGTGGTCTTGAATTCA+TGG | + | chr3.3:92703602-92703621 | None:intergenic | 45.0% |
! | GAGTGGTCTTGAATTCATGG+TGG | + | chr3.3:92703599-92703618 | None:intergenic | 45.0% |
! | GATTATCCGATTTGCGACAC+AGG | - | chr3.3:92705667-92705686 | MS.gene69606:CDS | 45.0% |
!! | AAGATCTGCGAAAGCGTTGA+GGG | + | chr3.3:92703574-92703593 | None:intergenic | 45.0% |
!! | CGGAAGAGGAAAAGCATTAC+AGG | - | chr3.3:92703475-92703494 | MS.gene69606:CDS | 45.0% |
!! | GACCATGCAGTGTTGATTGT+AGG | - | chr3.3:92705310-92705329 | MS.gene69606:CDS | 45.0% |
!! | GAGTTTAGAAGTGTCGTTGG+AGG | + | chr3.3:92703415-92703434 | None:intergenic | 45.0% |
!! | TAAGATCTGCGAAAGCGTTG+AGG | + | chr3.3:92703575-92703594 | None:intergenic | 45.0% |
!! | TGTTGGTCATTTTCGGCTAC+CGG | - | chr3.3:92704671-92704690 | MS.gene69606:intron | 45.0% |
!!! | ATTATTATTTTTATAATCTT+AGG | + | chr3.3:92703964-92703983 | None:intergenic | 5.0% |
AGGCATATGCGGTAGTGCAA+GGG | - | chr3.3:92705145-92705164 | MS.gene69606:intron | 50.0% | |
AGGTGAAAAGCCAAGACGAG+TGG | + | chr3.3:92703616-92703635 | None:intergenic | 50.0% | |
CCTGTTAGCGTAGGCATATG+CGG | - | chr3.3:92705134-92705153 | MS.gene69606:intron | 50.0% | |
CTCCTTCCTGTGTCGCAAAT+CGG | + | chr3.3:92705676-92705695 | None:intergenic | 50.0% | |
GACAATTCTGCCGGGTTATG+TGG | - | chr3.3:92705430-92705449 | MS.gene69606:CDS | 50.0% | |
GTCAAAGACCAAGGAAGCTG+TGG | - | chr3.3:92703750-92703769 | MS.gene69606:intron | 50.0% | |
TAGGCATATGCGGTAGTGCA+AGG | - | chr3.3:92705144-92705163 | MS.gene69606:intron | 50.0% | |
TTATAGGACCTGGTGGAGGT+GGG | + | chr3.3:92705507-92705526 | None:intergenic | 50.0% | |
! | ATCCGATTTGCGACACAGGA+AGG | - | chr3.3:92705671-92705690 | MS.gene69606:CDS | 50.0% |
! | GTTGAGGGAGAGGGTATAAC+TGG | + | chr3.3:92703559-92703578 | None:intergenic | 50.0% |
!! | TGGTTGTGATGGTGGACTCA+TGG | - | chr3.3:92704784-92704803 | MS.gene69606:intron | 50.0% |
CAACAAGGGGATTGACACCG+AGG | - | chr3.3:92704832-92704851 | MS.gene69606:intron | 55.0% | |
CACCTCCACCAGGTCCTATA+AGG | - | chr3.3:92705506-92705525 | MS.gene69606:CDS | 55.0% | |
CACCTTATAGGACCTGGTGG+AGG | + | chr3.3:92705511-92705530 | None:intergenic | 55.0% | |
CCGCATATGCCTACGCTAAC+AGG | + | chr3.3:92705137-92705156 | None:intergenic | 55.0% | |
CTTATAGGACCTGGTGGAGG+TGG | + | chr3.3:92705508-92705527 | None:intergenic | 55.0% | |
GCAGTCCAACCTGTTAGCGT+AGG | - | chr3.3:92705125-92705144 | MS.gene69606:intron | 55.0% | |
!! | TGCGAAAGCGTTGAGGGAGA+GGG | + | chr3.3:92703568-92703587 | None:intergenic | 55.0% |
GAGGTGGGACAGGAGGATTG+GGG | + | chr3.3:92705492-92705511 | None:intergenic | 60.0% | |
GGAGGTGGGACAGGAGGATT+GGG | + | chr3.3:92705493-92705512 | None:intergenic | 60.0% | |
TGGAGGTGGGACAGGAGGAT+TGG | + | chr3.3:92705494-92705513 | None:intergenic | 60.0% | |
!! | AGGAGGATTGGGGCTGGTCT+TGG | + | chr3.3:92705482-92705501 | None:intergenic | 60.0% |
!! | CTGCGAAAGCGTTGAGGGAG+AGG | + | chr3.3:92703569-92703588 | None:intergenic | 60.0% |
!! | GGATTGGGGCTGGTCTTGGT+TGG | + | chr3.3:92705478-92705497 | None:intergenic | 60.0% |
CGGCTACCGGCGCTATCGAA+GGG | - | chr3.3:92704684-92704703 | MS.gene69606:intron | 65.0% | |
TCGGCTACCGGCGCTATCGA+AGG | - | chr3.3:92704683-92704702 | MS.gene69606:intron | 65.0% | |
TGGGACAGGAGGATTGGGGC+TGG | + | chr3.3:92705488-92705507 | None:intergenic | 65.0% | |
CCTCCTGTCCCACCTCCACC+AGG | - | chr3.3:92705496-92705515 | MS.gene69606:CDS | 70.0% | |
CCTGGTGGAGGTGGGACAGG+AGG | + | chr3.3:92705499-92705518 | None:intergenic | 70.0% | |
GGACCTGGTGGAGGTGGGAC+AGG | + | chr3.3:92705502-92705521 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 92703336 | 92705708 | 92703336 | ID=MS.gene69606 |
chr3.3 | mRNA | 92703336 | 92705708 | 92703336 | ID=MS.gene69606.t1;Parent=MS.gene69606 |
chr3.3 | exon | 92705273 | 92705708 | 92705273 | ID=MS.gene69606.t1.exon1;Parent=MS.gene69606.t1 |
chr3.3 | CDS | 92705273 | 92705708 | 92705273 | ID=cds.MS.gene69606.t1;Parent=MS.gene69606.t1 |
chr3.3 | exon | 92704143 | 92704378 | 92704143 | ID=MS.gene69606.t1.exon2;Parent=MS.gene69606.t1 |
chr3.3 | CDS | 92704143 | 92704378 | 92704143 | ID=cds.MS.gene69606.t1;Parent=MS.gene69606.t1 |
chr3.3 | exon | 92703857 | 92703997 | 92703857 | ID=MS.gene69606.t1.exon3;Parent=MS.gene69606.t1 |
chr3.3 | CDS | 92703857 | 92703997 | 92703857 | ID=cds.MS.gene69606.t1;Parent=MS.gene69606.t1 |
chr3.3 | exon | 92703336 | 92703767 | 92703336 | ID=MS.gene69606.t1.exon4;Parent=MS.gene69606.t1 |
chr3.3 | CDS | 92703336 | 92703767 | 92703336 | ID=cds.MS.gene69606.t1;Parent=MS.gene69606.t1 |
Gene Sequence |
Protein sequence |