Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064708.t1 | KEH36214.1 | 92.8 | 417 | 28 | 1 | 1 | 415 | 1 | 417 | 2.10E-221 | 778.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064708.t1 | Q9FMH8 | 48.4 | 399 | 190 | 4 | 26 | 414 | 42 | 434 | 2.2e-102 | 374.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064708.t1 | A0A072V2E9 | 92.8 | 417 | 28 | 1 | 1 | 415 | 1 | 417 | 1.5e-221 | 778.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene064708 | MS.gene38563 | PPI |
MS.gene064708 | MS.gene00462 | PPI |
MS.gene064708 | MS.gene24440 | PPI |
MS.gene064708 | MS.gene012942 | PPI |
MS.gene064708 | MS.gene063260 | PPI |
MS.gene064708 | MS.gene063261 | PPI |
MS.gene064708 | MS.gene00463 | PPI |
MS.gene064708 | MS.gene063262 | PPI |
MS.gene064708 | MS.gene044078 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064708.t1 | MTR_3g112430 | 96.163 | 417 | 14 | 1 | 1 | 415 | 1 | 417 | 0.0 | 835 |
MS.gene064708.t1 | MTR_1g107550 | 51.220 | 410 | 190 | 4 | 12 | 413 | 28 | 435 | 2.83e-141 | 412 |
MS.gene064708.t1 | MTR_1g018840 | 48.941 | 425 | 196 | 7 | 12 | 417 | 23 | 445 | 1.03e-134 | 395 |
MS.gene064708.t1 | MTR_1g018840 | 48.936 | 423 | 195 | 7 | 12 | 415 | 23 | 443 | 4.44e-134 | 394 |
MS.gene064708.t1 | MTR_3g102220 | 46.804 | 438 | 205 | 8 | 5 | 416 | 9 | 444 | 1.30e-131 | 387 |
MS.gene064708.t1 | MTR_2g016180 | 47.926 | 434 | 193 | 8 | 9 | 416 | 19 | 445 | 4.52e-124 | 369 |
MS.gene064708.t1 | MTR_2g016270 | 47.575 | 433 | 181 | 8 | 9 | 416 | 19 | 430 | 2.25e-121 | 361 |
MS.gene064708.t1 | MTR_4g094918 | 48.105 | 343 | 170 | 5 | 9 | 346 | 9 | 348 | 9.87e-116 | 343 |
MS.gene064708.t1 | MTR_3g116080 | 51.039 | 337 | 152 | 5 | 11 | 340 | 18 | 348 | 2.92e-112 | 333 |
MS.gene064708.t1 | MTR_2g075830 | 48.083 | 339 | 155 | 6 | 12 | 339 | 12 | 340 | 1.56e-103 | 311 |
MS.gene064708.t1 | MTR_4g047610 | 49.844 | 321 | 142 | 6 | 28 | 339 | 32 | 342 | 3.15e-103 | 310 |
MS.gene064708.t1 | MTR_5g022560 | 47.661 | 342 | 155 | 7 | 12 | 339 | 12 | 343 | 4.13e-103 | 310 |
MS.gene064708.t1 | MTR_3g075390 | 46.591 | 352 | 174 | 4 | 10 | 349 | 5 | 354 | 6.01e-103 | 310 |
MS.gene064708.t1 | MTR_4g079770 | 48.105 | 343 | 152 | 8 | 12 | 339 | 13 | 344 | 1.80e-102 | 308 |
MS.gene064708.t1 | MTR_4g079440 | 49.351 | 308 | 147 | 5 | 32 | 338 | 44 | 343 | 1.16e-101 | 306 |
MS.gene064708.t1 | MTR_2g090890 | 47.321 | 336 | 162 | 5 | 11 | 340 | 11 | 337 | 4.01e-101 | 305 |
MS.gene064708.t1 | MTR_4g079470 | 50.000 | 314 | 137 | 6 | 35 | 339 | 42 | 344 | 6.67e-101 | 304 |
MS.gene064708.t1 | MTR_4g080700 | 50.327 | 306 | 144 | 3 | 35 | 339 | 41 | 339 | 2.43e-100 | 303 |
MS.gene064708.t1 | MTR_4g079800 | 49.045 | 314 | 140 | 6 | 35 | 339 | 42 | 344 | 4.26e-100 | 302 |
MS.gene064708.t1 | MTR_4g104370 | 47.384 | 344 | 170 | 6 | 12 | 347 | 11 | 351 | 2.50e-99 | 301 |
MS.gene064708.t1 | MTR_4g080730 | 49.673 | 306 | 146 | 3 | 35 | 339 | 41 | 339 | 7.37e-99 | 299 |
MS.gene064708.t1 | MTR_4g107930 | 46.491 | 342 | 159 | 7 | 12 | 339 | 13 | 344 | 1.27e-98 | 298 |
MS.gene064708.t1 | MTR_2g083930 | 45.317 | 331 | 178 | 3 | 11 | 338 | 12 | 342 | 4.82e-97 | 294 |
MS.gene064708.t1 | MTR_4g080360 | 46.471 | 340 | 171 | 5 | 6 | 339 | 7 | 341 | 8.11e-97 | 294 |
MS.gene064708.t1 | MTR_7g079230 | 43.695 | 341 | 162 | 7 | 13 | 338 | 9 | 334 | 5.42e-86 | 266 |
MS.gene064708.t1 | MTR_7g078600 | 46.349 | 315 | 145 | 8 | 31 | 338 | 39 | 336 | 1.19e-85 | 265 |
MS.gene064708.t1 | MTR_4g065077 | 41.504 | 359 | 177 | 10 | 7 | 341 | 9 | 358 | 2.60e-79 | 249 |
MS.gene064708.t1 | MTR_2g015850 | 46.178 | 314 | 159 | 7 | 26 | 338 | 58 | 362 | 3.12e-78 | 247 |
MS.gene064708.t1 | MTR_2g015920 | 40.597 | 335 | 181 | 8 | 21 | 346 | 40 | 365 | 1.66e-76 | 243 |
MS.gene064708.t1 | MTR_2g067900 | 42.988 | 328 | 169 | 10 | 21 | 337 | 3 | 323 | 4.09e-74 | 235 |
MS.gene064708.t1 | MTR_8g086470 | 40.169 | 356 | 170 | 9 | 7 | 341 | 25 | 358 | 1.16e-72 | 232 |
MS.gene064708.t1 | MTR_2g015930 | 41.390 | 331 | 173 | 9 | 21 | 340 | 39 | 359 | 1.45e-72 | 232 |
MS.gene064708.t1 | MTR_4g125300 | 40.367 | 327 | 172 | 10 | 20 | 339 | 38 | 348 | 3.86e-68 | 220 |
MS.gene064708.t1 | MTR_2g064475 | 35.196 | 358 | 184 | 14 | 21 | 339 | 3 | 351 | 3.71e-62 | 205 |
MS.gene064708.t1 | MTR_4g071060 | 38.318 | 321 | 165 | 11 | 34 | 336 | 48 | 353 | 5.24e-61 | 202 |
MS.gene064708.t1 | MTR_2g067560 | 36.812 | 345 | 186 | 11 | 23 | 343 | 5 | 341 | 3.19e-58 | 205 |
MS.gene064708.t1 | MTR_1g023210 | 36.760 | 321 | 171 | 10 | 34 | 336 | 51 | 357 | 5.42e-58 | 194 |
MS.gene064708.t1 | MTR_2g016380 | 50.711 | 211 | 87 | 3 | 222 | 416 | 16 | 225 | 2.27e-57 | 189 |
MS.gene064708.t1 | MTR_2g066980 | 36.170 | 329 | 157 | 11 | 27 | 339 | 27 | 318 | 1.84e-55 | 186 |
MS.gene064708.t1 | MTR_1g094135 | 35.882 | 340 | 175 | 14 | 30 | 345 | 52 | 372 | 1.49e-54 | 186 |
MS.gene064708.t1 | MTR_1g023810 | 43.119 | 218 | 117 | 5 | 123 | 337 | 48 | 261 | 1.09e-51 | 175 |
MS.gene064708.t1 | MTR_4g072790 | 35.922 | 309 | 153 | 11 | 34 | 336 | 48 | 317 | 2.31e-47 | 165 |
MS.gene064708.t1 | MTR_4g073660 | 36.859 | 312 | 150 | 12 | 34 | 336 | 47 | 320 | 3.49e-46 | 162 |
MS.gene064708.t1 | MTR_4g072340 | 36.859 | 312 | 150 | 12 | 34 | 336 | 48 | 321 | 4.85e-46 | 162 |
MS.gene064708.t1 | MTR_7g078630 | 36.879 | 282 | 132 | 7 | 26 | 295 | 698 | 945 | 1.88e-42 | 160 |
MS.gene064708.t1 | MTR_7g078580 | 59.184 | 98 | 38 | 2 | 242 | 338 | 4 | 100 | 2.12e-29 | 111 |
MS.gene064708.t1 | MTR_2g015840 | 49.541 | 109 | 53 | 2 | 232 | 339 | 164 | 271 | 1.07e-28 | 114 |
MS.gene064708.t1 | MTR_2g015840 | 37.600 | 125 | 76 | 1 | 35 | 159 | 34 | 156 | 2.81e-22 | 96.3 |
MS.gene064708.t1 | MTR_1g025450 | 38.150 | 173 | 85 | 5 | 123 | 292 | 54 | 207 | 9.19e-28 | 115 |
MS.gene064708.t1 | MTR_7g079130 | 58.889 | 90 | 36 | 1 | 250 | 338 | 7 | 96 | 7.93e-27 | 103 |
MS.gene064708.t1 | MTR_7g078310 | 31.553 | 206 | 120 | 5 | 17 | 219 | 63 | 250 | 8.86e-21 | 91.7 |
MS.gene064708.t1 | MTR_7g086240 | 53.333 | 75 | 34 | 1 | 30 | 104 | 30 | 103 | 5.54e-20 | 85.1 |
MS.gene064708.t1 | MTR_3g029560 | 32.701 | 211 | 114 | 7 | 135 | 339 | 49 | 237 | 4.53e-19 | 86.3 |
MS.gene064708.t1 | MTR_2g047960 | 43.529 | 85 | 48 | 0 | 134 | 218 | 8 | 92 | 4.25e-17 | 76.6 |
MS.gene064708.t1 | MTR_7g079260 | 47.500 | 80 | 25 | 2 | 266 | 344 | 7 | 70 | 7.41e-15 | 70.9 |
MS.gene064708.t1 | MTR_8g087510 | 36.923 | 130 | 76 | 5 | 165 | 292 | 23 | 148 | 1.05e-14 | 72.4 |
MS.gene064708.t1 | MTR_3g082370 | 26.977 | 215 | 119 | 8 | 126 | 315 | 2 | 203 | 3.90e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064708.t1 | AT1G09850 | 69.309 | 391 | 110 | 2 | 28 | 415 | 26 | 409 | 0.0 | 565 |
MS.gene064708.t1 | AT3G19390 | 50.847 | 413 | 192 | 5 | 8 | 413 | 12 | 420 | 1.63e-140 | 409 |
MS.gene064708.t1 | AT5G43060 | 48.872 | 399 | 188 | 4 | 26 | 414 | 42 | 434 | 4.42e-134 | 393 |
MS.gene064708.t1 | AT1G47128 | 45.497 | 433 | 208 | 5 | 5 | 414 | 6 | 433 | 4.34e-130 | 383 |
MS.gene064708.t1 | AT3G19400 | 52.351 | 319 | 133 | 6 | 33 | 342 | 43 | 351 | 7.40e-115 | 340 |
MS.gene064708.t1 | AT4G35350 | 53.871 | 310 | 139 | 2 | 32 | 341 | 49 | 354 | 9.37e-115 | 340 |
MS.gene064708.t1 | AT1G20850 | 53.226 | 310 | 142 | 2 | 32 | 341 | 49 | 355 | 8.98e-114 | 338 |
MS.gene064708.t1 | AT4G36880 | 52.000 | 325 | 147 | 5 | 29 | 345 | 44 | 367 | 1.44e-113 | 338 |
MS.gene064708.t1 | AT4G23520 | 49.714 | 350 | 156 | 9 | 7 | 342 | 9 | 352 | 4.38e-108 | 323 |
MS.gene064708.t1 | AT3G48340 | 47.458 | 354 | 170 | 4 | 9 | 348 | 1 | 352 | 1.50e-104 | 314 |
MS.gene064708.t1 | AT3G48350 | 47.159 | 352 | 176 | 6 | 1 | 345 | 1 | 349 | 2.25e-103 | 311 |
MS.gene064708.t1 | AT4G11320 | 48.438 | 320 | 151 | 6 | 29 | 342 | 51 | 362 | 4.62e-101 | 306 |
MS.gene064708.t1 | AT4G11320 | 48.438 | 320 | 151 | 6 | 29 | 342 | 51 | 362 | 4.62e-101 | 306 |
MS.gene064708.t1 | AT4G11310 | 48.113 | 318 | 155 | 5 | 29 | 342 | 44 | 355 | 4.96e-101 | 305 |
MS.gene064708.t1 | AT2G27420 | 45.042 | 353 | 157 | 8 | 13 | 338 | 4 | 346 | 2.72e-99 | 300 |
MS.gene064708.t1 | AT5G50260 | 45.690 | 348 | 179 | 4 | 7 | 346 | 4 | 349 | 2.98e-99 | 301 |
MS.gene064708.t1 | AT5G45890 | 44.571 | 350 | 173 | 7 | 1 | 339 | 6 | 345 | 1.98e-98 | 298 |
MS.gene064708.t1 | AT3G49340 | 47.041 | 338 | 163 | 7 | 14 | 338 | 5 | 339 | 5.88e-97 | 294 |
MS.gene064708.t1 | AT1G06260 | 49.026 | 308 | 149 | 5 | 34 | 340 | 43 | 343 | 1.64e-94 | 288 |
MS.gene064708.t1 | AT2G34080 | 41.261 | 349 | 180 | 7 | 8 | 339 | 4 | 344 | 5.38e-88 | 271 |
MS.gene064708.t1 | AT1G29080 | 43.042 | 309 | 169 | 5 | 35 | 339 | 40 | 345 | 7.19e-85 | 263 |
MS.gene064708.t1 | AT1G29090 | 40.782 | 358 | 186 | 8 | 3 | 339 | 2 | 354 | 2.20e-84 | 262 |
MS.gene064708.t1 | AT3G43960 | 44.615 | 325 | 166 | 10 | 33 | 350 | 40 | 357 | 6.81e-84 | 262 |
MS.gene064708.t1 | AT4G35350 | 51.029 | 243 | 114 | 3 | 32 | 274 | 49 | 286 | 2.47e-80 | 249 |
MS.gene064708.t1 | AT3G19400 | 51.626 | 246 | 100 | 6 | 33 | 269 | 43 | 278 | 2.90e-80 | 249 |
MS.gene064708.t1 | AT1G29110 | 38.053 | 339 | 192 | 5 | 6 | 339 | 8 | 333 | 1.12e-73 | 234 |
MS.gene064708.t1 | AT3G48350 | 45.357 | 280 | 144 | 5 | 1 | 274 | 1 | 277 | 1.64e-70 | 224 |
MS.gene064708.t1 | AT5G60360 | 40.127 | 314 | 164 | 9 | 34 | 339 | 59 | 356 | 1.73e-65 | 214 |
MS.gene064708.t1 | AT3G45310 | 41.401 | 314 | 160 | 9 | 34 | 339 | 59 | 356 | 2.07e-65 | 213 |
MS.gene064708.t1 | AT3G45310 | 41.083 | 314 | 160 | 9 | 34 | 339 | 59 | 355 | 2.63e-63 | 208 |
MS.gene064708.t1 | AT5G60360 | 39.490 | 314 | 165 | 9 | 34 | 339 | 59 | 355 | 4.73e-63 | 207 |
MS.gene064708.t1 | AT5G60360 | 40.614 | 293 | 154 | 8 | 34 | 318 | 59 | 339 | 2.81e-62 | 205 |
MS.gene064708.t1 | AT4G39090 | 38.095 | 336 | 173 | 11 | 24 | 341 | 44 | 362 | 1.98e-61 | 203 |
MS.gene064708.t1 | AT2G21430 | 38.872 | 337 | 171 | 12 | 24 | 342 | 41 | 360 | 2.20e-60 | 201 |
MS.gene064708.t1 | AT3G54940 | 37.048 | 332 | 178 | 11 | 30 | 342 | 47 | 366 | 2.50e-60 | 201 |
MS.gene064708.t1 | AT4G16190 | 36.517 | 356 | 185 | 12 | 16 | 345 | 32 | 372 | 4.88e-56 | 189 |
MS.gene064708.t1 | AT3G54940 | 35.319 | 235 | 139 | 4 | 30 | 256 | 47 | 276 | 3.46e-41 | 147 |
MS.gene064708.t1 | AT4G01610 | 28.053 | 303 | 178 | 15 | 56 | 331 | 41 | 330 | 7.25e-18 | 85.1 |
MS.gene064708.t1 | AT4G01610 | 28.197 | 305 | 175 | 16 | 56 | 331 | 41 | 330 | 5.03e-16 | 79.3 |
MS.gene064708.t1 | AT1G02300 | 26.577 | 222 | 133 | 9 | 143 | 340 | 146 | 361 | 1.44e-11 | 66.2 |
Find 114 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGACCATGTTCAACTTATT+TGG | 0.109517 | 3.4:-97399181 | MS.gene064708:CDS |
CGGAAAATGGAGTAGATTAT+TGG | 0.213933 | 3.4:-97399128 | MS.gene064708:CDS |
CCTTGTTGTCAATGATAAAT+TGG | 0.219943 | 3.4:+97399640 | None:intergenic |
GGAGGTGGGACAGGAGGATT+GGG | 0.228778 | 3.4:+97398979 | None:intergenic |
CGAATTGTTGATCTTCAATA+TGG | 0.262283 | 3.4:+97400790 | None:intergenic |
CTCTAATCATACAGTTAAAA+AGG | 0.286687 | 3.4:-97399436 | MS.gene064708:intron |
ACATATTCCAAGAAATTTCT+TGG | 0.288831 | 3.4:+97398894 | None:intergenic |
AGGCGTGTTGTTACGATTGA+TGG | 0.304945 | 3.4:-97399416 | MS.gene064708:CDS |
TGTTGTGCCAAGAAATTTCT+TGG | 0.305181 | 3.4:-97398901 | MS.gene064708:CDS |
AGGAGGATTGGGGCTGGTCT+TGG | 0.309200 | 3.4:+97398990 | None:intergenic |
GTAGGATATGGTTCGGAAAA+TGG | 0.311996 | 3.4:-97399141 | MS.gene064708:CDS |
CGGAAGAGGAAAAGCATTAC+AGG | 0.334307 | 3.4:-97400977 | MS.gene064708:CDS |
TGGAGGTGGGACAGGAGGAT+TGG | 0.334659 | 3.4:+97398978 | None:intergenic |
AAGCTCCTTCTGAGATTGAT+TGG | 0.339906 | 3.4:-97400749 | MS.gene064708:CDS |
CCGCATATGCCTACGCTAAC+AGG | 0.347930 | 3.4:+97399335 | None:intergenic |
GATCAACAATTCGATGATAA+TGG | 0.365773 | 3.4:-97400780 | MS.gene064708:CDS |
CACCTCCACCAGGTCCTATA+AGG | 0.367239 | 3.4:-97398963 | MS.gene064708:CDS |
GTAAACAAATTACACCTTAT+AGG | 0.367395 | 3.4:+97398949 | None:intergenic |
TTCTTGGAATATGTTTCTCT+TGG | 0.370661 | 3.4:-97398885 | MS.gene064708:CDS |
CATGTTGTTTGCTCCACTCT+TGG | 0.376144 | 3.4:+97401015 | None:intergenic |
TGTCTCACAACACAATCAAA+TGG | 0.386774 | 3.4:-97400925 | MS.gene064708:CDS |
GAAGAAAGGGAAACAATTCA+TGG | 0.396707 | 3.4:+97401118 | None:intergenic |
TAATTTCAGGGTATCTTCAC+TGG | 0.406924 | 3.4:-97399201 | MS.gene064708:intron |
AGGAAGGAGCCAATGTCTTA+AGG | 0.410638 | 3.4:-97398782 | MS.gene064708:intron |
GCAGTGTTGATTGTAGGATA+TGG | 0.413085 | 3.4:-97399153 | MS.gene064708:CDS |
AAAATTCTTGGGGAAAATCA+TGG | 0.426065 | 3.4:-97399098 | MS.gene064708:CDS |
GGACCTGGTGGAGGTGGGAC+AGG | 0.431037 | 3.4:+97398970 | None:intergenic |
GACGAGTGGTCTTGAATTCA+TGG | 0.438570 | 3.4:+97400853 | None:intergenic |
CTCCTTCCTGTGTCGCAAAT+CGG | 0.440855 | 3.4:+97398796 | None:intergenic |
TGCGATAGAACTTATAATAG+TGG | 0.441166 | 3.4:-97399693 | MS.gene064708:CDS |
GAGCCTTTCTGAACAAGAAC+TGG | 0.441747 | 3.4:-97399721 | MS.gene064708:CDS |
AACAAGTACCACAGCTTCCT+TGG | 0.449023 | 3.4:+97400694 | None:intergenic |
GCTCAACCTTTGAGTATAGC+TGG | 0.455156 | 3.4:+97399297 | None:intergenic |
AACTTCTGCCGTATGTTGTA+AGG | 0.456184 | 3.4:-97398848 | MS.gene064708:CDS |
GGGATAAATAAAATTGCGAC+AGG | 0.462626 | 3.4:-97399753 | MS.gene064708:CDS |
GTCTCACAACACAATCAAAT+GGG | 0.464045 | 3.4:-97400924 | MS.gene064708:CDS |
TGGGACAGGAGGATTGGGGC+TGG | 0.464785 | 3.4:+97398984 | None:intergenic |
GTTGAGGGAGAGGGTATAAC+TGG | 0.464837 | 3.4:+97400896 | None:intergenic |
CGAAACACTGACAATTCTGC+CGG | 0.467909 | 3.4:-97399048 | MS.gene064708:CDS |
GACAATTCTGCCGGGTTATG+TGG | 0.469503 | 3.4:-97399039 | MS.gene064708:CDS |
CTTATAGGACCTGGTGGAGG+TGG | 0.469543 | 3.4:+97398964 | None:intergenic |
AGACAAAAGCATAATTGTCT+TGG | 0.473308 | 3.4:+97400943 | None:intergenic |
TTGAATCTTAACAACGAAGA+AGG | 0.474141 | 3.4:+97400819 | None:intergenic |
AAGAATCGTAAAATGAAGAA+AGG | 0.479815 | 3.4:+97401104 | None:intergenic |
GGAAAATCATGGGGAATGAA+TGG | 0.480194 | 3.4:-97399087 | MS.gene064708:CDS |
GAATTCAAGACCACTCGTCT+TGG | 0.484353 | 3.4:-97400849 | MS.gene064708:CDS |
GACCATGCAGTGTTGATTGT+AGG | 0.492425 | 3.4:-97399159 | MS.gene064708:CDS |
GTTGATTGTAGGATATGGTT+CGG | 0.492801 | 3.4:-97399148 | MS.gene064708:CDS |
CCTCCTGTCCCACCTCCACC+AGG | 0.493624 | 3.4:-97398973 | MS.gene064708:CDS |
CTGCGAAAGCGTTGAGGGAG+AGG | 0.496556 | 3.4:+97400886 | None:intergenic |
AACTTTCAGAGAATTGCAAA+TGG | 0.496720 | 3.4:-97398484 | MS.gene064708:intron |
GGATTGGGGCTGGTCTTGGT+TGG | 0.499898 | 3.4:+97398994 | None:intergenic |
ACATGGCAAAACATACTCTT+CGG | 0.504448 | 3.4:-97400997 | MS.gene064708:CDS |
GAGGTGGGACAGGAGGATTG+GGG | 0.504545 | 3.4:+97398980 | None:intergenic |
TATATTATGCAGGTGCTTGT+TGG | 0.506019 | 3.4:-97399803 | MS.gene064708:intron |
AAATTCTTGGGGAAAATCAT+GGG | 0.511879 | 3.4:-97399097 | MS.gene064708:CDS |
CTACCAGTTCTTGTTCAGAA+AGG | 0.514862 | 3.4:+97399718 | None:intergenic |
GAAGAGTTTAGAAGTGTCGT+TGG | 0.523076 | 3.4:+97401037 | None:intergenic |
AAGATCTGCGAAAGCGTTGA+GGG | 0.523858 | 3.4:+97400881 | None:intergenic |
TCGGCTACCGGCGCTATCGA+AGG | 0.524156 | 3.4:-97399774 | MS.gene064708:CDS |
AGTAGTTGACGACTTTGATA+CGG | 0.524727 | 3.4:+97399594 | None:intergenic |
TTGATACGGGTAATCTTCCT+CGG | 0.528900 | 3.4:+97399608 | None:intergenic |
AGAATCGTAAAATGAAGAAA+GGG | 0.533049 | 3.4:+97401105 | None:intergenic |
TGGTTGTGATGGTGGACTCA+TGG | 0.533089 | 3.4:-97399673 | MS.gene064708:CDS |
GAGTTTAGAAGTGTCGTTGG+AGG | 0.544087 | 3.4:+97401040 | None:intergenic |
AATTTATCATTGACAACAAG+GGG | 0.547366 | 3.4:-97399638 | MS.gene064708:CDS |
CAAAACATACTCTTCGGAAG+AGG | 0.547389 | 3.4:-97400991 | MS.gene064708:CDS |
GGCTTTCCAGCTATACTCAA+AGG | 0.552750 | 3.4:-97399303 | MS.gene064708:intron |
AAAGTATCTTCTTTATCGGA+TGG | 0.553823 | 3.4:+97398448 | None:intergenic |
GATTATCCGATTTGCGACAC+AGG | 0.554458 | 3.4:-97398802 | MS.gene064708:CDS |
GTAGTTGACGACTTTGATAC+GGG | 0.555441 | 3.4:+97399595 | None:intergenic |
TAGGCATATGCGGTAGTGCA+AGG | 0.556213 | 3.4:-97399325 | MS.gene064708:CDS |
ACTTTCAGAGAATTGCAAAT+GGG | 0.556305 | 3.4:-97398483 | MS.gene064708:intron |
CCTGGTGGAGGTGGGACAGG+AGG | 0.556666 | 3.4:+97398973 | None:intergenic |
CCAATTTATCATTGACAACA+AGG | 0.568474 | 3.4:-97399640 | MS.gene064708:CDS |
ACGCTTATCCTTACAACATA+CGG | 0.573675 | 3.4:+97398840 | None:intergenic |
CGGCTACCGGCGCTATCGAA+GGG | 0.573864 | 3.4:-97399773 | MS.gene064708:CDS |
TGTTTACTTACTGTTCAAGA+GGG | 0.575277 | 3.4:-97398933 | MS.gene064708:CDS |
TTTCTCCAATCAATCTCAGA+AGG | 0.577692 | 3.4:+97400744 | None:intergenic |
TTGTTTACTTACTGTTCAAG+AGG | 0.582368 | 3.4:-97398934 | MS.gene064708:CDS |
CATGTTGATTCCACATAACC+CGG | 0.585499 | 3.4:+97399029 | None:intergenic |
ATCCGATTTGCGACACAGGA+AGG | 0.586995 | 3.4:-97398798 | MS.gene064708:CDS |
TATAATAGTGGTTGTGATGG+TGG | 0.587393 | 3.4:-97399681 | MS.gene064708:CDS |
CCTGTTAGCGTAGGCATATG+CGG | 0.590888 | 3.4:-97399335 | MS.gene064708:CDS |
CTTCTAAACTCTTCCAAGAG+TGG | 0.597993 | 3.4:-97401028 | MS.gene064708:CDS |
TGCGAAAGCGTTGAGGGAGA+GGG | 0.599343 | 3.4:+97400887 | None:intergenic |
TCGTACAAACCTTAAGACAT+TGG | 0.602539 | 3.4:+97398773 | None:intergenic |
CAATTTATCATTGACAACAA+GGG | 0.603160 | 3.4:-97399639 | MS.gene064708:CDS |
ATCCTACAATCAACACTGCA+TGG | 0.609724 | 3.4:+97399157 | None:intergenic |
TAAGATCTGCGAAAGCGTTG+AGG | 0.611274 | 3.4:+97400880 | None:intergenic |
CAAGAGTGGAGCAAACAACA+TGG | 0.613878 | 3.4:-97401014 | MS.gene064708:CDS |
GAAACACTGACAATTCTGCC+GGG | 0.614611 | 3.4:-97399047 | MS.gene064708:CDS |
TTATAGGACCTGGTGGAGGT+GGG | 0.616742 | 3.4:+97398965 | None:intergenic |
GTCAAAGACCAAGGAAGCTG+TGG | 0.619485 | 3.4:-97400702 | MS.gene064708:intron |
GCAGTCCAACCTGTTAGCGT+AGG | 0.624437 | 3.4:-97399344 | MS.gene064708:CDS |
AGGCATATGCGGTAGTGCAA+GGG | 0.627713 | 3.4:-97399324 | MS.gene064708:CDS |
CACCTTATAGGACCTGGTGG+AGG | 0.632080 | 3.4:+97398961 | None:intergenic |
ATTTATCCCTTCGATAGCGC+CGG | 0.633443 | 3.4:+97399767 | None:intergenic |
AGTGGTCTTGAATTCATGGT+GGG | 0.644824 | 3.4:+97400857 | None:intergenic |
AAATTACACCTTATAGGACC+TGG | 0.645003 | 3.4:+97398955 | None:intergenic |
ACTTATAATAGTGGTTGTGA+TGG | 0.645070 | 3.4:-97399684 | MS.gene064708:CDS |
AATTCTTGGGGAAAATCATG+GGG | 0.645550 | 3.4:-97399096 | MS.gene064708:CDS |
GTTTACTTACTGTTCAAGAG+GGG | 0.646992 | 3.4:-97398932 | MS.gene064708:CDS |
AGGTGAAAAGCCAAGACGAG+TGG | 0.648629 | 3.4:+97400839 | None:intergenic |
GAGATTGATTGGAGAAAGAG+TGG | 0.655370 | 3.4:-97400738 | MS.gene064708:CDS |
TGTTTCTCTTGGAAATGCTG+TGG | 0.659910 | 3.4:-97398874 | MS.gene064708:CDS |
GTTACTTCTGTCAAAGACCA+AGG | 0.660559 | 3.4:-97400711 | MS.gene064708:CDS |
TCGCAAATCGGATAATCTAG+AGG | 0.660600 | 3.4:+97398808 | None:intergenic |
TGGTCCAAATAAGTTGAACA+TGG | 0.672306 | 3.4:+97399177 | None:intergenic |
TTACACCTTATAGGACCTGG+TGG | 0.678738 | 3.4:+97398958 | None:intergenic |
ATATGCCTACGCTAACAGGT+TGG | 0.685295 | 3.4:+97399339 | None:intergenic |
GAGTGGTCTTGAATTCATGG+TGG | 0.700858 | 3.4:+97400856 | None:intergenic |
GGATAAATAAAATTGCGACA+GGG | 0.743762 | 3.4:-97399752 | MS.gene064708:CDS |
CAACAAGGGGATTGACACCG+AGG | 0.745272 | 3.4:-97399625 | MS.gene064708:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATAAAAAAAAATTATA+AGG | - | chr3.4:97399096-97399115 | MS.gene064708:CDS | 0.0% |
!! | TAATATACATAGAATATTAT+TGG | + | chr3.4:97399760-97399779 | None:intergenic | 10.0% |
!! | TTAATAATCAAATTTGAAAA+GGG | - | chr3.4:97398971-97398990 | MS.gene064708:CDS | 10.0% |
!! | GTTAATAATCAAATTTGAAA+AGG | - | chr3.4:97398970-97398989 | MS.gene064708:CDS | 15.0% |
!! | TTTATAAAGATGTTAAATGA+GGG | - | chr3.4:97399398-97399417 | MS.gene064708:CDS | 15.0% |
!!! | TTCTTCTTATTTTAATTTCA+GGG | - | chr3.4:97400363-97400382 | MS.gene064708:intron | 15.0% |
!! | ACTACTAATACAAACTATAA+TGG | + | chr3.4:97399263-97399282 | None:intergenic | 20.0% |
!! | ATAGATTGATGTTTAATACT+TGG | - | chr3.4:97399142-97399161 | MS.gene064708:CDS | 20.0% |
!! | ATATTCTATGTATATTATGC+AGG | - | chr3.4:97399763-97399782 | MS.gene064708:CDS | 20.0% |
!! | ATTGGATTGTAAAAAATTCT+TGG | - | chr3.4:97400466-97400485 | MS.gene064708:intron | 20.0% |
!! | GTTTATAAAGATGTTAAATG+AGG | - | chr3.4:97399397-97399416 | MS.gene064708:CDS | 20.0% |
!! | TAGATTGATGTTTAATACTT+GGG | - | chr3.4:97399143-97399162 | MS.gene064708:CDS | 20.0% |
!! | TTCAACTACAATAAGTATTT+AGG | - | chr3.4:97399330-97399349 | MS.gene064708:CDS | 20.0% |
!! | TTGGATTGTAAAAAATTCTT+GGG | - | chr3.4:97400467-97400486 | MS.gene064708:intron | 20.0% |
!!! | GTTCTTCTTATTTTAATTTC+AGG | - | chr3.4:97400362-97400381 | MS.gene064708:intron | 20.0% |
! | AAGAATCGTAAAATGAAGAA+AGG | + | chr3.4:97398475-97398494 | None:intergenic | 25.0% |
! | AATTTATCATTGACAACAAG+GGG | - | chr3.4:97399938-97399957 | MS.gene064708:intron | 25.0% |
! | ACATATTCCAAGAAATTTCT+TGG | + | chr3.4:97400685-97400704 | None:intergenic | 25.0% |
! | AGAATCGTAAAATGAAGAAA+GGG | + | chr3.4:97398474-97398493 | None:intergenic | 25.0% |
! | AGATTGATGTTTAATACTTG+GGG | - | chr3.4:97399144-97399163 | MS.gene064708:CDS | 25.0% |
! | ATAATCAAATTTGAAAAGGG+TGG | - | chr3.4:97398974-97398993 | MS.gene064708:CDS | 25.0% |
! | ATGGTCAATATTAGTAACAT+AGG | - | chr3.4:97400305-97400324 | MS.gene064708:intron | 25.0% |
! | CAATTTATCATTGACAACAA+GGG | - | chr3.4:97399937-97399956 | MS.gene064708:intron | 25.0% |
! | CTATACTCATCATAAGTAAA+TGG | - | chr3.4:97400838-97400857 | MS.gene064708:CDS | 25.0% |
! | CTCTAATCATACAGTTAAAA+AGG | - | chr3.4:97400140-97400159 | MS.gene064708:intron | 25.0% |
! | GTAAACAAATTACACCTTAT+AGG | + | chr3.4:97400630-97400649 | None:intergenic | 25.0% |
! | GTATTAGTAGTAGATATTTG+AGG | - | chr3.4:97399272-97399291 | MS.gene064708:intron | 25.0% |
! | TAATCAAATTTGAAAAGGGT+GGG | - | chr3.4:97398975-97398994 | MS.gene064708:CDS | 25.0% |
! | TACTTATGATGAGTATAGAA+AGG | + | chr3.4:97400836-97400855 | None:intergenic | 25.0% |
! | TGGATTGTAAAAAATTCTTG+GGG | - | chr3.4:97400468-97400487 | MS.gene064708:intron | 25.0% |
! | TTGTCAATGTTGTTAAATAG+AGG | - | chr3.4:97400890-97400909 | MS.gene064708:CDS | 25.0% |
!! | AACAATTTCTTTTGCATTAG+AGG | + | chr3.4:97399184-97399203 | None:intergenic | 25.0% |
!!! | AGGCTTGTTTTTATGTTTTT+AGG | - | chr3.4:97399371-97399390 | MS.gene064708:CDS | 25.0% |
!!! | CTTTTTAACTGTATGATTAG+AGG | + | chr3.4:97400142-97400161 | None:intergenic | 25.0% |
!!! | TGCTTTATTTCTTTAAGCAT+TGG | - | chr3.4:97399699-97399718 | MS.gene064708:CDS | 25.0% |
AAAATTCTTGGGGAAAATCA+TGG | - | chr3.4:97400478-97400497 | MS.gene064708:intron | 30.0% | |
AAATTCTTGGGGAAAATCAT+GGG | - | chr3.4:97400479-97400498 | MS.gene064708:intron | 30.0% | |
AACTTTCAGAGAATTGCAAA+TGG | - | chr3.4:97401092-97401111 | MS.gene064708:CDS | 30.0% | |
ACTACTTTGCAAAAAAGACA+AGG | - | chr3.4:97399999-97400018 | MS.gene064708:intron | 30.0% | |
ACTTATAATAGTGGTTGTGA+TGG | - | chr3.4:97399892-97399911 | MS.gene064708:intron | 30.0% | |
ACTTTCAGAGAATTGCAAAT+GGG | - | chr3.4:97401093-97401112 | MS.gene064708:CDS | 30.0% | |
CCAATTTATCATTGACAACA+AGG | - | chr3.4:97399936-97399955 | MS.gene064708:intron | 30.0% | |
CGAATTGTTGATCTTCAATA+TGG | + | chr3.4:97398789-97398808 | None:intergenic | 30.0% | |
GATCAACAATTCGATGATAA+TGG | - | chr3.4:97398796-97398815 | MS.gene064708:CDS | 30.0% | |
GATTGATGTTTAATACTTGG+GGG | - | chr3.4:97399145-97399164 | MS.gene064708:CDS | 30.0% | |
GGATAAATAAAATTGCGACA+GGG | - | chr3.4:97399824-97399843 | MS.gene064708:intron | 30.0% | |
GGTCCAATATTGAACAAATT+GGG | - | chr3.4:97400859-97400878 | MS.gene064708:CDS | 30.0% | |
TGACGAGAAAAAACTACTAA+AGG | - | chr3.4:97400204-97400223 | MS.gene064708:intron | 30.0% | |
TGCGATAGAACTTATAATAG+TGG | - | chr3.4:97399883-97399902 | MS.gene064708:intron | 30.0% | |
TGCTGTCAAAATATCATTTC+TGG | + | chr3.4:97399455-97399474 | None:intergenic | 30.0% | |
TGGTCCAATATTGAACAAAT+TGG | - | chr3.4:97400858-97400877 | MS.gene064708:CDS | 30.0% | |
TGTTTACTTACTGTTCAAGA+GGG | - | chr3.4:97400643-97400662 | MS.gene064708:intron | 30.0% | |
TTATGATGAGTATAGAAAGG+AGG | + | chr3.4:97400833-97400852 | None:intergenic | 30.0% | |
TTCTTGGAATATGTTTCTCT+TGG | - | chr3.4:97400691-97400710 | MS.gene064708:intron | 30.0% | |
TTGAATCTTAACAACGAAGA+AGG | + | chr3.4:97398760-97398779 | None:intergenic | 30.0% | |
TTGTTTACTTACTGTTCAAG+AGG | - | chr3.4:97400642-97400661 | MS.gene064708:intron | 30.0% | |
! | AGACAAAAGCATAATTGTCT+TGG | + | chr3.4:97398636-97398655 | None:intergenic | 30.0% |
! | CCTTGTTGTCAATGATAAAT+TGG | + | chr3.4:97399939-97399958 | None:intergenic | 30.0% |
! | TCACCCAATTTGTTCAATAT+TGG | + | chr3.4:97400865-97400884 | None:intergenic | 30.0% |
! | TGAACAATAGCCATTGTTTT+GGG | - | chr3.4:97400928-97400947 | MS.gene064708:CDS | 30.0% |
! | TTGAACAATAGCCATTGTTT+TGG | - | chr3.4:97400927-97400946 | MS.gene064708:CDS | 30.0% |
!! | AGACAGCTTATTAGTTTGTA+AGG | - | chr3.4:97399028-97399047 | MS.gene064708:CDS | 30.0% |
!! | AGCTTATTAGTTTGTAAGGT+GGG | - | chr3.4:97399032-97399051 | MS.gene064708:CDS | 30.0% |
!! | GTGTTGGGTGTATTTTTATA+TGG | - | chr3.4:97399557-97399576 | MS.gene064708:intron | 30.0% |
!!! | AGTAGTTTTTTCTCGTCATT+TGG | + | chr3.4:97400202-97400221 | None:intergenic | 30.0% |
AAATTACACCTTATAGGACC+TGG | + | chr3.4:97400624-97400643 | None:intergenic | 35.0% | |
AATAGCGTATCCCAAAACAA+TGG | + | chr3.4:97400941-97400960 | None:intergenic | 35.0% | |
AATTCTTGGGGAAAATCATG+GGG | - | chr3.4:97400480-97400499 | MS.gene064708:intron | 35.0% | |
ACATGGCAAAACATACTCTT+CGG | - | chr3.4:97398579-97398598 | MS.gene064708:intron | 35.0% | |
ACGCTTATCCTTACAACATA+CGG | + | chr3.4:97400739-97400758 | None:intergenic | 35.0% | |
ACTGCATCATTATACACTGT+CGG | + | chr3.4:97399488-97399507 | None:intergenic | 35.0% | |
AGTAGTTGACGACTTTGATA+CGG | + | chr3.4:97399985-97400004 | None:intergenic | 35.0% | |
CGGAAAATGGAGTAGATTAT+TGG | - | chr3.4:97400448-97400467 | MS.gene064708:intron | 35.0% | |
GGGATAAATAAAATTGCGAC+AGG | - | chr3.4:97399823-97399842 | MS.gene064708:intron | 35.0% | |
GTAGTTGAAAAGCTTCCATA+GGG | + | chr3.4:97399319-97399338 | None:intergenic | 35.0% | |
GTCTCACAACACAATCAAAT+GGG | - | chr3.4:97398652-97398671 | MS.gene064708:intron | 35.0% | |
GTTGATTGTAGGATATGGTT+CGG | - | chr3.4:97400428-97400447 | MS.gene064708:intron | 35.0% | |
GTTTACTTACTGTTCAAGAG+GGG | - | chr3.4:97400644-97400663 | MS.gene064708:intron | 35.0% | |
TAACTGTATGATTAGAGGTG+AGG | + | chr3.4:97400137-97400156 | None:intergenic | 35.0% | |
TAAGCTGATTATCATGTTGC+TGG | - | chr3.4:97401029-97401048 | MS.gene064708:CDS | 35.0% | |
TATAATAGTGGTTGTGATGG+TGG | - | chr3.4:97399895-97399914 | MS.gene064708:intron | 35.0% | |
TATATTATGCAGGTGCTTGT+TGG | - | chr3.4:97399773-97399792 | MS.gene064708:CDS | 35.0% | |
TCGTACAAACCTTAAGACAT+TGG | + | chr3.4:97400806-97400825 | None:intergenic | 35.0% | |
TGCAAATTCGCAACAGTAAT+TGG | + | chr3.4:97400335-97400354 | None:intergenic | 35.0% | |
TGGACCATGTTCAACTTATT+TGG | - | chr3.4:97400395-97400414 | MS.gene064708:intron | 35.0% | |
TGTAGTTGAAAAGCTTCCAT+AGG | + | chr3.4:97399320-97399339 | None:intergenic | 35.0% | |
TGTCTCACAACACAATCAAA+TGG | - | chr3.4:97398651-97398670 | MS.gene064708:intron | 35.0% | |
TGTTGTGCCAAGAAATTTCT+TGG | - | chr3.4:97400675-97400694 | MS.gene064708:intron | 35.0% | |
TTAGATAAGCTTCTACCCTA+TGG | - | chr3.4:97399301-97399320 | MS.gene064708:intron | 35.0% | |
TTTCTCCAATCAATCTCAGA+AGG | + | chr3.4:97398835-97398854 | None:intergenic | 35.0% | |
! | AAACAAGCCTTTTCATCATG+AGG | + | chr3.4:97399361-97399380 | None:intergenic | 35.0% |
! | CATAAGTTGAGAACAAGTTG+AGG | + | chr3.4:97399633-97399652 | None:intergenic | 35.0% |
! | GGTTTTACCTCATGATGAAA+AGG | - | chr3.4:97399351-97399370 | MS.gene064708:CDS | 35.0% |
! | TAATTTCAGGGTATCTTCAC+TGG | - | chr3.4:97400375-97400394 | MS.gene064708:intron | 35.0% |
! | TGGTCCAAATAAGTTGAACA+TGG | + | chr3.4:97400402-97400421 | None:intergenic | 35.0% |
! | TTTTTCTCGCTATCCTAGTT+AGG | - | chr3.4:97399525-97399544 | MS.gene064708:intron | 35.0% |
!! | CAGCTTATTAGTTTGTAAGG+TGG | - | chr3.4:97399031-97399050 | MS.gene064708:CDS | 35.0% |
!! | GCTTATTAGTTTGTAAGGTG+GGG | - | chr3.4:97399033-97399052 | MS.gene064708:CDS | 35.0% |
!!! | AGTTTTTTCTCGTCATTTGG+AGG | + | chr3.4:97400199-97400218 | None:intergenic | 35.0% |
AACTTCTGCCGTATGTTGTA+AGG | - | chr3.4:97400728-97400747 | MS.gene064708:CDS | 40.0% | |
AAGGTGGGGTTATGTGAATT+GGG | - | chr3.4:97399047-97399066 | MS.gene064708:CDS | 40.0% | |
AATGCCATAGCACTGTTTCA+TGG | - | chr3.4:97400985-97401004 | MS.gene064708:CDS | 40.0% | |
ATCCTACAATCAACACTGCA+TGG | + | chr3.4:97400422-97400441 | None:intergenic | 40.0% | |
CAAAACATACTCTTCGGAAG+AGG | - | chr3.4:97398585-97398604 | MS.gene064708:intron | 40.0% | |
CTACCAGTTCTTGTTCAGAA+AGG | + | chr3.4:97399861-97399880 | None:intergenic | 40.0% | |
CTTCTAAACTCTTCCAAGAG+TGG | - | chr3.4:97398548-97398567 | MS.gene064708:intron | 40.0% | |
GAGATTGATTGGAGAAAGAG+TGG | - | chr3.4:97398838-97398857 | MS.gene064708:CDS | 40.0% | |
GGAAAATCATGGGGAATGAA+TGG | - | chr3.4:97400489-97400508 | MS.gene064708:intron | 40.0% | |
GGAGCTTATGAGAAAATGTG+AGG | - | chr3.4:97399419-97399438 | MS.gene064708:CDS | 40.0% | |
GTAGTTGACGACTTTGATAC+GGG | + | chr3.4:97399984-97400003 | None:intergenic | 40.0% | |
GTTACTTCTGTCAAAGACCA+AGG | - | chr3.4:97398865-97398884 | MS.gene064708:CDS | 40.0% | |
TAAGGTGGGGTTATGTGAAT+TGG | - | chr3.4:97399046-97399065 | MS.gene064708:CDS | 40.0% | |
TAATACTTGGGGGACATAGA+AGG | - | chr3.4:97399155-97399174 | MS.gene064708:CDS | 40.0% | |
TACTCAAAGGTTGAGCTCAA+TGG | - | chr3.4:97400286-97400305 | MS.gene064708:intron | 40.0% | |
TCGCAAATCGGATAATCTAG+AGG | + | chr3.4:97400771-97400790 | None:intergenic | 40.0% | |
TGTTTCTCTTGGAAATGCTG+TGG | - | chr3.4:97400702-97400721 | MS.gene064708:intron | 40.0% | |
TTGATACGGGTAATCTTCCT+CGG | + | chr3.4:97399971-97399990 | None:intergenic | 40.0% | |
! | AGTGCTATGGCATTGCTATT+TGG | + | chr3.4:97400979-97400998 | None:intergenic | 40.0% |
! | AGTGGTCTTGAATTCATGGT+GGG | + | chr3.4:97398722-97398741 | None:intergenic | 40.0% |
! | GTAGGATATGGTTCGGAAAA+TGG | - | chr3.4:97400435-97400454 | MS.gene064708:intron | 40.0% |
!! | AAGCTCCTTCTGAGATTGAT+TGG | - | chr3.4:97398827-97398846 | MS.gene064708:CDS | 40.0% |
!! | AGGTGCTTGTTGGTCATTTT+CGG | - | chr3.4:97399783-97399802 | MS.gene064708:CDS | 40.0% |
!! | CATGTTGATTCCACATAACC+CGG | + | chr3.4:97400550-97400569 | None:intergenic | 40.0% |
!! | GAAGAGTTTAGAAGTGTCGT+TGG | + | chr3.4:97398542-97398561 | None:intergenic | 40.0% |
!! | GCAGTGTTGATTGTAGGATA+TGG | - | chr3.4:97400423-97400442 | MS.gene064708:intron | 40.0% |
AACAAGTACCACAGCTTCCT+TGG | + | chr3.4:97398885-97398904 | None:intergenic | 45.0% | |
ACACAATTGCCGACCTAACT+AGG | + | chr3.4:97399541-97399560 | None:intergenic | 45.0% | |
AGGAAGGAGCCAATGTCTTA+AGG | - | chr3.4:97400794-97400813 | MS.gene064708:CDS | 45.0% | |
AGTTAGGTCGGCAATTGTGT+TGG | - | chr3.4:97399541-97399560 | MS.gene064708:intron | 45.0% | |
ATATGCCTACGCTAACAGGT+TGG | + | chr3.4:97400240-97400259 | None:intergenic | 45.0% | |
ATGGTGTACACGTACAGTGA+CGG | - | chr3.4:97399576-97399595 | MS.gene064708:intron | 45.0% | |
ATTTATCCCTTCGATAGCGC+CGG | + | chr3.4:97399812-97399831 | None:intergenic | 45.0% | |
CAAGAGTGGAGCAAACAACA+TGG | - | chr3.4:97398562-97398581 | MS.gene064708:intron | 45.0% | |
CGAAACACTGACAATTCTGC+CGG | - | chr3.4:97400528-97400547 | MS.gene064708:intron | 45.0% | |
GAAACACTGACAATTCTGCC+GGG | - | chr3.4:97400529-97400548 | MS.gene064708:intron | 45.0% | |
GAATTCAAGACCACTCGTCT+TGG | - | chr3.4:97398727-97398746 | MS.gene064708:intron | 45.0% | |
GAGCCTTTCTGAACAAGAAC+TGG | - | chr3.4:97399855-97399874 | MS.gene064708:intron | 45.0% | |
GCTCAACCTTTGAGTATAGC+TGG | + | chr3.4:97400282-97400301 | None:intergenic | 45.0% | |
GGCTTTCCAGCTATACTCAA+AGG | - | chr3.4:97400273-97400292 | MS.gene064708:intron | 45.0% | |
GTTAGGTCGGCAATTGTGTT+GGG | - | chr3.4:97399542-97399561 | MS.gene064708:intron | 45.0% | |
TCTCGCTATCCTAGTTAGGT+CGG | - | chr3.4:97399529-97399548 | MS.gene064708:intron | 45.0% | |
TCTGCCATGAAACAGTGCTA+TGG | + | chr3.4:97400992-97401011 | None:intergenic | 45.0% | |
TGGGGTTATGTGAATTGGGA+TGG | - | chr3.4:97399051-97399070 | MS.gene064708:CDS | 45.0% | |
TTACACCTTATAGGACCTGG+TGG | + | chr3.4:97400621-97400640 | None:intergenic | 45.0% | |
! | AGGCGTGTTGTTACGATTGA+TGG | - | chr3.4:97400160-97400179 | MS.gene064708:intron | 45.0% |
! | CATGTTGTTTGCTCCACTCT+TGG | + | chr3.4:97398564-97398583 | None:intergenic | 45.0% |
! | GACGAGTGGTCTTGAATTCA+TGG | + | chr3.4:97398726-97398745 | None:intergenic | 45.0% |
! | GAGTGGTCTTGAATTCATGG+TGG | + | chr3.4:97398723-97398742 | None:intergenic | 45.0% |
! | GATTATCCGATTTGCGACAC+AGG | - | chr3.4:97400774-97400793 | MS.gene064708:CDS | 45.0% |
!! | AAGATCTGCGAAAGCGTTGA+GGG | + | chr3.4:97398698-97398717 | None:intergenic | 45.0% |
!! | CGGAAGAGGAAAAGCATTAC+AGG | - | chr3.4:97398599-97398618 | MS.gene064708:intron | 45.0% |
!! | GACCATGCAGTGTTGATTGT+AGG | - | chr3.4:97400417-97400436 | MS.gene064708:intron | 45.0% |
!! | GAGTTTAGAAGTGTCGTTGG+AGG | + | chr3.4:97398539-97398558 | None:intergenic | 45.0% |
!! | TAAGATCTGCGAAAGCGTTG+AGG | + | chr3.4:97398699-97398718 | None:intergenic | 45.0% |
!! | TGTTGGTCATTTTCGGCTAC+CGG | - | chr3.4:97399790-97399809 | MS.gene064708:CDS | 45.0% |
!!! | TTTTTTATTTTTATAATCTT+AGG | + | chr3.4:97399088-97399107 | None:intergenic | 5.0% |
AGGCATATGCGGTAGTGCAA+GGG | - | chr3.4:97400252-97400271 | MS.gene064708:intron | 50.0% | |
AGGTGAAAAGCCAAGACGAG+TGG | + | chr3.4:97398740-97398759 | None:intergenic | 50.0% | |
CCTGTTAGCGTAGGCATATG+CGG | - | chr3.4:97400241-97400260 | MS.gene064708:intron | 50.0% | |
CTCCTTCCTGTGTCGCAAAT+CGG | + | chr3.4:97400783-97400802 | None:intergenic | 50.0% | |
GACAATTCTGCCGGGTTATG+TGG | - | chr3.4:97400537-97400556 | MS.gene064708:intron | 50.0% | |
GTCAAAGACCAAGGAAGCTG+TGG | - | chr3.4:97398874-97398893 | MS.gene064708:CDS | 50.0% | |
TAGGCATATGCGGTAGTGCA+AGG | - | chr3.4:97400251-97400270 | MS.gene064708:intron | 50.0% | |
TGGTGTACACGTACAGTGAC+GGG | - | chr3.4:97399577-97399596 | MS.gene064708:intron | 50.0% | |
TTATAGGACCTGGTGGAGGT+GGG | + | chr3.4:97400614-97400633 | None:intergenic | 50.0% | |
! | ATCCGATTTGCGACACAGGA+AGG | - | chr3.4:97400778-97400797 | MS.gene064708:CDS | 50.0% |
! | GTTGAGGGAGAGGGTATAAC+TGG | + | chr3.4:97398683-97398702 | None:intergenic | 50.0% |
!! | TGGTTGTGATGGTGGACTCA+TGG | - | chr3.4:97399903-97399922 | MS.gene064708:intron | 50.0% |
CAACAAGGGGATTGACACCG+AGG | - | chr3.4:97399951-97399970 | MS.gene064708:intron | 55.0% | |
CACCTCCACCAGGTCCTATA+AGG | - | chr3.4:97400613-97400632 | MS.gene064708:intron | 55.0% | |
CACCTTATAGGACCTGGTGG+AGG | + | chr3.4:97400618-97400637 | None:intergenic | 55.0% | |
CCGCATATGCCTACGCTAAC+AGG | + | chr3.4:97400244-97400263 | None:intergenic | 55.0% | |
CTTATAGGACCTGGTGGAGG+TGG | + | chr3.4:97400615-97400634 | None:intergenic | 55.0% | |
GCAGTCCAACCTGTTAGCGT+AGG | - | chr3.4:97400232-97400251 | MS.gene064708:intron | 55.0% | |
!! | TGCGAAAGCGTTGAGGGAGA+GGG | + | chr3.4:97398692-97398711 | None:intergenic | 55.0% |
GAGGTGGGACAGGAGGATTG+GGG | + | chr3.4:97400599-97400618 | None:intergenic | 60.0% | |
GGAGGTGGGACAGGAGGATT+GGG | + | chr3.4:97400600-97400619 | None:intergenic | 60.0% | |
TGGAGGTGGGACAGGAGGAT+TGG | + | chr3.4:97400601-97400620 | None:intergenic | 60.0% | |
!! | AGGAGGATTGGGGCTGGTCT+TGG | + | chr3.4:97400589-97400608 | None:intergenic | 60.0% |
!! | CTGCGAAAGCGTTGAGGGAG+AGG | + | chr3.4:97398693-97398712 | None:intergenic | 60.0% |
!! | GGATTGGGGCTGGTCTTGGT+TGG | + | chr3.4:97400585-97400604 | None:intergenic | 60.0% |
CGGCTACCGGCGCTATCGAA+GGG | - | chr3.4:97399803-97399822 | MS.gene064708:intron | 65.0% | |
TCGGCTACCGGCGCTATCGA+AGG | - | chr3.4:97399802-97399821 | MS.gene064708:intron | 65.0% | |
TGGGACAGGAGGATTGGGGC+TGG | + | chr3.4:97400595-97400614 | None:intergenic | 65.0% | |
CCTCCTGTCCCACCTCCACC+AGG | - | chr3.4:97400603-97400622 | MS.gene064708:intron | 70.0% | |
CCTGGTGGAGGTGGGACAGG+AGG | + | chr3.4:97400606-97400625 | None:intergenic | 70.0% | |
GGACCTGGTGGAGGTGGGAC+AGG | + | chr3.4:97400609-97400628 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 97398460 | 97401138 | 97398460 | ID=MS.gene064708 |
chr3.4 | mRNA | 97398460 | 97401138 | 97398460 | ID=MS.gene064708.t1;Parent=MS.gene064708 |
chr3.4 | exon | 97400703 | 97401138 | 97400703 | ID=MS.gene064708.t1.exon1;Parent=MS.gene064708.t1 |
chr3.4 | CDS | 97400703 | 97401138 | 97400703 | ID=cds.MS.gene064708.t1;Parent=MS.gene064708.t1 |
chr3.4 | exon | 97399578 | 97399813 | 97399578 | ID=MS.gene064708.t1.exon2;Parent=MS.gene064708.t1 |
chr3.4 | CDS | 97399578 | 97399813 | 97399578 | ID=cds.MS.gene064708.t1;Parent=MS.gene064708.t1 |
chr3.4 | exon | 97399304 | 97399444 | 97399304 | ID=MS.gene064708.t1.exon3;Parent=MS.gene064708.t1 |
chr3.4 | CDS | 97399304 | 97399444 | 97399304 | ID=cds.MS.gene064708.t1;Parent=MS.gene064708.t1 |
chr3.4 | exon | 97398783 | 97399214 | 97398783 | ID=MS.gene064708.t1.exon4;Parent=MS.gene064708.t1 |
chr3.4 | CDS | 97398783 | 97399214 | 97398783 | ID=cds.MS.gene064708.t1;Parent=MS.gene064708.t1 |
chr3.4 | exon | 97398460 | 97398495 | 97398460 | ID=MS.gene064708.t1.exon5;Parent=MS.gene064708.t1 |
chr3.4 | CDS | 97398460 | 97398495 | 97398460 | ID=cds.MS.gene064708.t1;Parent=MS.gene064708.t1 |
Gene Sequence |
Protein sequence |