AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063261

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063261.t1 MTR_1g018840 97.655 469 11 0 1 469 6 474 0.0 959
MS.gene063261.t1 MTR_1g018840 97.489 438 11 0 1 438 6 443 0.0 892
MS.gene063261.t1 MTR_3g102220 72.043 465 127 2 7 469 11 474 0.0 687
MS.gene063261.t1 MTR_1g107550 67.972 434 132 3 22 454 26 453 0.0 598
MS.gene063261.t1 MTR_4g094918 64.543 361 114 1 3 363 2 348 6.68e-177 500
MS.gene063261.t1 MTR_3g112430 51.020 392 181 6 49 438 35 417 6.68e-132 389
MS.gene063261.t1 MTR_3g116080 52.339 342 151 4 16 357 19 348 7.97e-127 372
MS.gene063261.t1 MTR_3g075390 50.411 365 171 7 11 373 6 362 3.61e-123 363
MS.gene063261.t1 MTR_4g104370 49.862 363 172 7 13 373 6 360 1.03e-117 349
MS.gene063261.t1 MTR_2g016180 44.787 422 208 8 42 448 43 454 4.05e-117 352
MS.gene063261.t1 MTR_2g016270 44.286 420 198 8 42 448 43 439 7.46e-115 346
MS.gene063261.t1 MTR_4g079470 51.227 326 142 7 37 355 28 343 2.31e-112 335
MS.gene063261.t1 MTR_4g079770 53.035 313 130 7 50 355 41 343 4.63e-112 334
MS.gene063261.t1 MTR_5g022560 48.864 352 151 8 16 355 8 342 7.79e-112 334
MS.gene063261.t1 MTR_4g047610 50.462 325 145 6 38 355 26 341 1.50e-110 330
MS.gene063261.t1 MTR_4g079800 52.396 313 132 7 50 355 41 343 1.62e-110 330
MS.gene063261.t1 MTR_2g075830 48.980 343 153 7 19 355 13 339 1.13e-109 328
MS.gene063261.t1 MTR_4g080730 52.597 308 135 6 50 355 40 338 3.91e-108 324
MS.gene063261.t1 MTR_4g080700 51.948 308 137 6 50 355 40 338 9.58e-107 320
MS.gene063261.t1 MTR_4g079440 45.559 349 179 6 10 356 5 344 2.46e-106 320
MS.gene063261.t1 MTR_4g107930 50.467 321 140 8 45 355 32 343 4.87e-106 319
MS.gene063261.t1 MTR_2g090890 46.307 352 166 7 14 358 3 338 5.42e-106 318
MS.gene063261.t1 MTR_4g080360 47.664 321 161 6 39 356 25 341 6.38e-100 303
MS.gene063261.t1 MTR_2g083930 45.342 322 172 4 38 356 23 343 9.43e-98 298
MS.gene063261.t1 MTR_7g078600 46.326 313 149 10 50 358 42 339 6.43e-86 267
MS.gene063261.t1 MTR_7g079230 43.077 325 166 8 37 355 23 334 5.73e-85 265
MS.gene063261.t1 MTR_2g015850 47.797 295 145 7 64 356 76 363 1.33e-80 254
MS.gene063261.t1 MTR_4g065077 40.872 367 183 14 5 357 11 357 7.52e-76 242
MS.gene063261.t1 MTR_2g015920 37.228 368 207 12 9 362 8 365 9.25e-71 229
MS.gene063261.t1 MTR_2g015930 38.950 362 195 13 11 357 9 359 3.42e-69 224
MS.gene063261.t1 MTR_4g125300 38.227 361 190 12 11 356 6 348 9.65e-67 218
MS.gene063261.t1 MTR_2g067900 42.902 317 165 11 50 356 16 326 2.59e-66 216
MS.gene063261.t1 MTR_8g086470 37.741 363 184 13 5 357 27 357 6.98e-66 216
MS.gene063261.t1 MTR_4g071060 38.983 354 168 12 13 336 6 341 3.74e-63 209
MS.gene063261.t1 MTR_1g023210 41.611 298 148 8 56 336 57 345 4.63e-63 209
MS.gene063261.t1 MTR_2g067560 39.255 349 186 15 48 380 14 352 1.34e-54 196
MS.gene063261.t1 MTR_1g094135 33.962 371 201 10 4 348 6 358 1.50e-54 187
MS.gene063261.t1 MTR_2g064475 37.101 345 169 14 48 354 14 348 3.31e-54 185
MS.gene063261.t1 MTR_1g023810 45.249 221 111 7 138 354 47 261 4.85e-52 177
MS.gene063261.t1 MTR_2g066980 32.861 353 183 12 19 355 3 317 1.44e-50 175
MS.gene063261.t1 MTR_7g078630 37.162 296 134 8 28 311 690 945 1.69e-47 176
MS.gene063261.t1 MTR_4g072790 35.714 294 146 8 50 336 48 305 9.23e-46 162
MS.gene063261.t1 MTR_2g016380 40.553 217 117 4 240 446 18 232 2.58e-45 159
MS.gene063261.t1 MTR_4g072340 32.551 341 179 10 7 336 9 309 6.55e-44 157
MS.gene063261.t1 MTR_4g073660 34.459 296 151 7 50 336 47 308 1.56e-43 156
MS.gene063261.t1 MTR_1g025450 43.103 174 77 5 138 308 53 207 1.06e-32 130
MS.gene063261.t1 MTR_7g078580 50.476 105 49 3 258 361 4 106 6.47e-29 110
MS.gene063261.t1 MTR_2g015840 39.259 135 78 2 42 175 25 156 1.63e-27 111
MS.gene063261.t1 MTR_2g015840 44.954 109 57 3 248 355 164 270 1.36e-24 103
MS.gene063261.t1 MTR_7g079130 50.538 93 44 2 265 356 6 97 1.02e-24 98.2
MS.gene063261.t1 MTR_3g029560 33.962 212 111 8 151 356 49 237 2.67e-21 93.2
MS.gene063261.t1 MTR_7g078310 47.917 96 47 2 140 232 152 247 1.30e-20 91.7
MS.gene063261.t1 MTR_7g111060 27.758 281 158 12 97 348 66 330 7.07e-20 91.3
MS.gene063261.t1 MTR_2g047960 48.101 79 41 0 149 227 7 85 1.84e-18 80.9
MS.gene063261.t1 MTR_7g111050 26.715 277 166 11 97 348 63 327 5.09e-17 82.8
MS.gene063261.t1 MTR_8g087510 33.588 131 79 7 181 308 23 148 4.23e-12 65.1
MS.gene063261.t1 MTR_7g079260 42.466 73 24 2 282 353 7 62 7.43e-11 59.7
MS.gene063261.t1 MTR_1g009480 27.451 102 66 1 5 106 1 94 7.88e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063261.t1 AT1G47128 71.739 460 120 4 8 464 8 460 0.0 656
MS.gene063261.t1 AT5G43060 71.429 455 119 5 9 459 9 456 0.0 640
MS.gene063261.t1 AT3G19390 59.465 449 161 8 9 454 8 438 0.0 530
MS.gene063261.t1 AT4G36880 62.195 328 118 2 41 362 40 367 6.71e-151 434
MS.gene063261.t1 AT1G09850 51.551 419 179 7 44 455 26 427 8.81e-145 421
MS.gene063261.t1 AT3G19400 59.133 323 122 6 40 358 34 350 2.22e-136 397
MS.gene063261.t1 AT4G23520 55.028 358 142 8 5 358 9 351 1.54e-135 395
MS.gene063261.t1 AT4G11310 51.524 361 165 6 1 358 1 354 7.38e-127 373
MS.gene063261.t1 AT4G11320 51.801 361 164 6 3 358 6 361 1.40e-125 370
MS.gene063261.t1 AT4G11320 51.801 361 164 6 3 358 6 361 1.40e-125 370
MS.gene063261.t1 AT3G48340 51.831 355 164 5 12 365 4 352 2.81e-124 366
MS.gene063261.t1 AT1G20850 54.167 336 142 5 23 357 30 354 2.09e-122 361
MS.gene063261.t1 AT4G35350 50.142 351 164 3 7 357 14 353 4.24e-121 358
MS.gene063261.t1 AT5G50260 55.346 318 136 5 49 364 37 350 2.42e-118 351
MS.gene063261.t1 AT1G06260 47.714 350 164 6 11 357 10 343 4.54e-109 327
MS.gene063261.t1 AT3G48350 47.790 362 172 7 5 362 1 349 3.25e-108 325
MS.gene063261.t1 AT5G45890 45.042 353 173 6 7 355 9 344 5.13e-105 317
MS.gene063261.t1 AT3G43960 51.327 339 150 11 37 368 28 358 1.74e-102 311
MS.gene063261.t1 AT3G19400 58.964 251 94 5 40 286 34 279 8.09e-101 303
MS.gene063261.t1 AT2G34080 42.033 364 183 9 1 356 1 344 8.91e-91 280
MS.gene063261.t1 AT2G27420 42.936 361 183 10 5 356 1 347 2.22e-90 279
MS.gene063261.t1 AT3G49340 46.815 314 152 9 50 356 35 340 4.27e-90 278
MS.gene063261.t1 AT4G35350 47.535 284 138 3 7 290 14 286 1.16e-88 272
MS.gene063261.t1 AT1G29080 41.905 315 175 7 46 356 35 345 1.86e-81 256
MS.gene063261.t1 AT1G29090 40.000 365 179 11 9 356 13 354 3.29e-81 256
MS.gene063261.t1 AT3G48350 44.097 288 148 5 5 290 1 277 1.99e-73 233
MS.gene063261.t1 AT1G29110 35.673 342 202 6 19 356 6 333 1.33e-69 225
MS.gene063261.t1 AT5G60360 38.000 350 180 12 27 356 24 356 1.77e-65 215
MS.gene063261.t1 AT3G45310 36.000 375 202 12 1 356 1 356 1.82e-64 212
MS.gene063261.t1 AT4G39090 39.748 317 148 7 42 334 46 343 7.77e-64 211
MS.gene063261.t1 AT5G60360 37.429 350 181 12 27 356 24 355 3.53e-63 209
MS.gene063261.t1 AT5G60360 37.681 345 184 12 27 352 24 356 1.04e-62 208
MS.gene063261.t1 AT2G21430 36.212 359 185 10 1 334 1 340 1.17e-62 207
MS.gene063261.t1 AT3G45310 35.544 377 200 13 1 356 1 355 7.17e-62 206
MS.gene063261.t1 AT4G16190 35.574 357 195 11 6 336 3 350 3.71e-57 194
MS.gene063261.t1 AT3G54940 33.053 357 196 10 6 336 8 347 2.38e-51 178
MS.gene063261.t1 AT3G54940 32.042 284 161 7 6 272 8 276 7.44e-39 142
MS.gene063261.t1 AT4G01610 27.491 291 172 12 97 361 66 343 1.84e-20 93.2
MS.gene063261.t1 AT1G02305 27.698 278 162 11 97 348 69 333 7.37e-20 91.3
MS.gene063261.t1 AT4G01610 26.804 291 174 12 97 361 66 343 1.18e-18 87.8
MS.gene063261.t1 AT1G02300 28.095 210 122 8 161 348 148 350 4.49e-13 70.9

Find 129 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAAATGGGAAAGATTAT+TGG 0.227075 1.3:+4498925 MS.gene063261:CDS
GAACCGTAGGATGAAGAAAT+TGG 0.244550 1.3:+4496377 MS.gene063261:CDS
TATGTTCATCAATGAATTTA+AGG 0.255434 1.3:-4496257 None:intergenic
GTTGGATACGGTACAGAAAA+TGG 0.255932 1.3:+4498912 MS.gene063261:CDS
GGTGGTGATGGTCCAGGGTT+AGG 0.264790 1.3:-4499086 None:intergenic
GGGTTCTGTCCATTCTTAAT+TGG 0.270191 1.3:-4499062 None:intergenic
TTCCTCCAATCAACAGATTC+AGG 0.289567 1.3:-4496447 None:intergenic
GCCAAGCCTCACTGGGCCTT+TGG 0.294833 1.3:+4500523 MS.gene063261:CDS
TGTTGCTGTATTTACGAGTA+TGG 0.314590 1.3:+4499170 MS.gene063261:CDS
TTTCTCACCTAAACCGTTGT+AGG 0.323971 1.3:-4496205 None:intergenic
AACTTACATATTCATATAAC+TGG 0.326706 1.3:-4498555 None:intergenic
AGGATGCAATGGTGGACTTA+TGG 0.331252 1.3:+4498176 MS.gene063261:CDS
TGAATTCGACATATAGATTA+GGG 0.336748 1.3:+4496286 MS.gene063261:CDS
GTGGTGATGGTCCAGGGTTA+GGG 0.341154 1.3:-4499085 None:intergenic
GGAAAATCCTACAACGGTTT+AGG 0.345309 1.3:+4496198 MS.gene063261:CDS
ATGGTAGATGTGACCAGAAC+AGG 0.354867 1.3:+4498271 MS.gene063261:CDS
GAAATTCATGGGGTGGTAGC+TGG 0.356281 1.3:+4498955 MS.gene063261:CDS
TTGAATTCGACATATAGATT+AGG 0.369544 1.3:+4496285 MS.gene063261:CDS
CGTTAGTTAGATCCGCGAAC+CGG 0.375000 1.3:-4496314 None:intergenic
CAGACAGATGGTGGCTTGAT+AGG 0.385214 1.3:-4499113 None:intergenic
GCACTCCTGCCAAGCCTCAC+TGG 0.389486 1.3:+4500515 MS.gene063261:CDS
TGTTCCTGCTTATGATGAAT+TGG 0.389594 1.3:+4498468 MS.gene063261:CDS
TCTTGTCAGGGTGTATTTAC+CGG 0.390275 1.3:+4498852 MS.gene063261:intron
CCTATCGCCGTTGCTGTTGA+AGG 0.401421 1.3:+4498517 MS.gene063261:CDS
ATTGGATTGTGAGAAATTCA+TGG 0.410060 1.3:+4498943 MS.gene063261:CDS
CCAAGTAACTAACCCTGTTC+TGG 0.415431 1.3:-4498284 None:intergenic
TACCCTTACAAGGCTATTGA+TGG 0.421160 1.3:+4498252 MS.gene063261:CDS
CTACCATCAATAGCCTTGTA+AGG 0.422671 1.3:-4498255 None:intergenic
AATTGCCTGAATCTGTTGAT+TGG 0.426885 1.3:+4496442 MS.gene063261:CDS
AAGGCCCAGTGAGGCTTGGC+AGG 0.429824 1.3:-4500520 None:intergenic
CACTCCTGCCAAGCCTCACT+GGG 0.436398 1.3:+4500516 MS.gene063261:CDS
CCATTCTTAATTGGATAAGA+TGG 0.437304 1.3:-4499053 None:intergenic
AAATTCATGGGGTGGTAGCT+GGG 0.440858 1.3:+4498956 MS.gene063261:CDS
TCAGCAATCGCAGCTGTTGA+AGG 0.443055 1.3:+4498075 MS.gene063261:CDS
TTTCAATGAAGGGAGTTGTT+GGG 0.446061 1.3:+4498047 MS.gene063261:intron
GGTGATGGTCCAGGGTTAGG+GGG 0.448618 1.3:-4499083 None:intergenic
TGGTGATGGTCCAGGGTTAG+GGG 0.449337 1.3:-4499084 None:intergenic
AAGCCTCACTGGGCCTTTGG+TGG 0.453398 1.3:+4500526 MS.gene063261:CDS
GTGATGGTCCAGGGTTAGGG+GGG 0.453507 1.3:-4499082 None:intergenic
CATAGTCAACACTTCTTCGT+TGG 0.459007 1.3:-4496151 None:intergenic
AGGAAGGAAGGTGCTGTTGT+TGG 0.459612 1.3:+4496465 MS.gene063261:CDS
TCGTGCTGGACTTTGTCTTA+AGG 0.462543 1.3:+4499292 MS.gene063261:CDS
TTCACTATCAGAACAAGAAC+TGG 0.467996 1.3:+4498128 MS.gene063261:CDS
AATTTCTTCATCCTACGGTT+CGG 0.472057 1.3:-4496375 None:intergenic
GGTGAAGGTGGTGATGGTCC+AGG 0.475487 1.3:-4499092 None:intergenic
TGATGAATTGGCCTTGCAAA+AGG 0.476220 1.3:+4498480 MS.gene063261:CDS
GGAATAAATAAGATTGTGAC+AGG 0.481755 1.3:+4498096 MS.gene063261:CDS
AGGAGATGATCGACATGTCT+AGG 0.481788 1.3:-4496089 None:intergenic
TGAAGAAATTGGGTGGTGTA+AGG 0.482021 1.3:+4496388 MS.gene063261:CDS
CACCCAATTTCTTCATCCTA+CGG 0.483167 1.3:-4496380 None:intergenic
TTGAATGACTTCACTCCCAA+TGG 0.485328 1.3:-4500490 None:intergenic
AGTGCTTACCACAACTTGCT+TGG 0.487527 1.3:-4496497 None:intergenic
GCTTGTTGATTTGTCTGGGT+GGG 0.490913 1.3:-4496121 None:intergenic
CAACAGCAACGGCGATAGGC+TGG 0.494154 1.3:-4498513 None:intergenic
ATTAGGGTTGACCCGGTTCG+CGG 0.494343 1.3:+4496302 MS.gene063261:CDS
CCTTCAACAGCAACGGCGAT+AGG 0.495351 1.3:-4498517 None:intergenic
ACCAAAGGCCCAGTGAGGCT+TGG 0.495376 1.3:-4500524 None:intergenic
AACCGTAGGATGAAGAAATT+GGG 0.496972 1.3:+4496378 MS.gene063261:CDS
TTGGATACGGTACAGAAAAT+GGG 0.502646 1.3:+4498913 MS.gene063261:CDS
CCTGTCTGTGACACTCGTGC+TGG 0.506173 1.3:+4499278 MS.gene063261:CDS
TGGAAGATCTTGCTTTGAGT+GGG 0.510888 1.3:+4499190 MS.gene063261:CDS
CCATCTTATCCAATTAAGAA+TGG 0.514473 1.3:+4499053 MS.gene063261:CDS
TGAATGACTTCACTCCCAAT+GGG 0.526918 1.3:-4500489 None:intergenic
TGCTTGTTGATTTGTCTGGG+TGG 0.529438 1.3:-4496122 None:intergenic
AAATTCATTGATGAACATAA+CGG 0.530458 1.3:+4496261 MS.gene063261:CDS
TCAAGCAGAGCAGGAAAGTG+TGG 0.532736 1.3:+4499017 MS.gene063261:CDS
GGCTAGTGAAACTGTGAAAG+TGG 0.534429 1.3:-4496067 None:intergenic
GTTAGTTAGATCCGCGAACC+GGG 0.534519 1.3:-4496313 None:intergenic
AGCTACTACAGCTGTGCTGA+AGG 0.535391 1.3:+4499140 MS.gene063261:CDS
TTTGAGTTCATCATCAGTAA+TGG 0.537702 1.3:+4498207 MS.gene063261:CDS
AATCTAGCTTCAAGCAGAGC+AGG 0.546872 1.3:+4499008 MS.gene063261:CDS
TTGGATTGTGAGAAATTCAT+GGG 0.548066 1.3:+4498944 MS.gene063261:CDS
GACCATGGTGTTGCAGCTGT+TGG 0.548818 1.3:+4498894 MS.gene063261:CDS
TGCCTGAATCTGTTGATTGG+AGG 0.549740 1.3:+4496445 MS.gene063261:CDS
TGCTGTTGAAGGAGGCGGTA+GGG 0.550318 1.3:+4498528 MS.gene063261:CDS
CAGGGCAAGAATAACCCATT+GGG 0.551019 1.3:+4500475 MS.gene063261:intron
CATCTTGTTCTTACCACCAA+AGG 0.551674 1.3:-4500539 None:intergenic
GGTGGTAGCTGGGGTGAACA+AGG 0.554597 1.3:+4498966 MS.gene063261:CDS
TTGATAGGTGAAGGTGGTGA+TGG 0.555756 1.3:-4499098 None:intergenic
GCCGTTGCTGTTGAAGGAGG+CGG 0.557434 1.3:+4498523 MS.gene063261:CDS
GGTGTTGCAGCTGTTGGATA+CGG 0.561703 1.3:+4498900 MS.gene063261:CDS
CATATAGATTAGGGTTGACC+CGG 0.561757 1.3:+4496295 MS.gene063261:CDS
ATGGAAGATCTTGCTTTGAG+TGG 0.563923 1.3:+4499189 MS.gene063261:CDS
TAGTGCCGTTCCACATCTAC+CGG 0.569067 1.3:-4498871 None:intergenic
CCAGCACGAGTGTCACAGAC+AGG 0.571924 1.3:-4499278 None:intergenic
TGAAGAGGATTACCCTTACA+AGG 0.572769 1.3:+4498242 MS.gene063261:CDS
AATTCATGGGGTGGTAGCTG+GGG 0.574383 1.3:+4498957 MS.gene063261:CDS
GGAGATGATCGACATGTCTA+GGG 0.575045 1.3:-4496088 None:intergenic
ACAGGGCAAGAATAACCCAT+TGG 0.575173 1.3:+4500474 MS.gene063261:intron
AATCGTTATGCGCCACGTGT+CGG 0.576425 1.3:+4496414 MS.gene063261:CDS
GTTTAGGTGAGAAAGACAAA+AGG 0.579754 1.3:+4496214 MS.gene063261:CDS
GTCAAAGACCAAGCAAGTTG+TGG 0.584862 1.3:+4496489 MS.gene063261:CDS
AAGGCCAATTCATCATAAGC+AGG 0.585009 1.3:-4498472 None:intergenic
GGTGTATTTACCGGTAGATG+TGG 0.590389 1.3:+4498861 MS.gene063261:CDS
TACCATCAATAGCCTTGTAA+GGG 0.599159 1.3:-4498254 None:intergenic
GAGTTCATCATCAGTAATGG+TGG 0.599792 1.3:+4498210 MS.gene063261:CDS
ACTATCAGAACAAGAACTGG+TGG 0.602270 1.3:+4498131 MS.gene063261:CDS
GTGAAGGTGGTGATGGTCCA+GGG 0.603987 1.3:-4499091 None:intergenic
ATCGCCGTTGCTGTTGAAGG+AGG 0.609464 1.3:+4498520 MS.gene063261:CDS
TTGCTGTTGAAGGAGGCGGT+AGG 0.609931 1.3:+4498527 MS.gene063261:CDS
GAAGAGTGGTTAGTGAAACA+TGG 0.615801 1.3:+4496177 MS.gene063261:CDS
CAAAGATCGATCCGAACCGT+AGG 0.618623 1.3:+4496364 MS.gene063261:CDS
CAGCAAGTAGCAGACTCAAG+AGG 0.620435 1.3:-4499221 None:intergenic
TAGTAGCTGTCACAGACAGA+TGG 0.620790 1.3:-4499125 None:intergenic
TGGTAGATGTGACCAGAACA+GGG 0.623188 1.3:+4498272 MS.gene063261:CDS
TGGTGGCATTGACTCTGAAG+AGG 0.626193 1.3:+4498227 MS.gene063261:CDS
TCATACAACGAAGGATGCAA+TGG 0.627683 1.3:+4498165 MS.gene063261:CDS
TACAACGAAGGATGCAATGG+TGG 0.630463 1.3:+4498168 MS.gene063261:CDS
GGCAATTTATCACCGACACG+TGG 0.638153 1.3:-4496426 None:intergenic
TGTTGACTATGTACGAAGAG+TGG 0.640568 1.3:+4496163 MS.gene063261:CDS
TAGCTGTCACAGACAGATGG+TGG 0.645708 1.3:-4499122 None:intergenic
ATTACTGATGATGAACTCAA+AGG 0.646757 1.3:-4498205 None:intergenic
GGTGGCTTGATAGGTGAAGG+TGG 0.647988 1.3:-4499104 None:intergenic
ACCGCCTCCTTCAACAGCAA+CGG 0.651172 1.3:-4498524 None:intergenic
TCTGTTGATTGGAGGAAGGA+AGG 0.651628 1.3:+4496453 MS.gene063261:CDS
TGAATCTGTTGATTGGAGGA+AGG 0.656666 1.3:+4496449 MS.gene063261:CDS
CACAGACAGGATACTCATGA+GGG 0.662230 1.3:-4499265 None:intergenic
TCACAGACAGGATACTCATG+AGG 0.662392 1.3:-4499266 None:intergenic
ATTTACCGGTAGATGTGGAA+CGG 0.675984 1.3:+4498866 MS.gene063261:CDS
ATCCAACAGCTGCAACACCA+TGG 0.676166 1.3:-4498896 None:intergenic
TGTGGAACGGCACTAGACCA+TGG 0.678729 1.3:+4498879 MS.gene063261:CDS
CGTAGGATGAAGAAATTGGG+TGG 0.680087 1.3:+4496381 MS.gene063261:CDS
GATGGTGGCTTGATAGGTGA+AGG 0.689206 1.3:-4499107 None:intergenic
GGAAGATCTTGCTTTGAGTG+GGG 0.689687 1.3:+4499191 MS.gene063261:CDS
AAACATGGAAAATCCTACAA+CGG 0.700433 1.3:+4496192 MS.gene063261:CDS
ATTGTGAGAAATTCATGGGG+TGG 0.703535 1.3:+4498948 MS.gene063261:CDS
TGTGATACATCATACAACGA+AGG 0.706999 1.3:+4498156 MS.gene063261:CDS
TTACCACCAAAGGCCCAGTG+AGG 0.714697 1.3:-4500529 None:intergenic
TGGATTGTGAGAAATTCATG+GGG 0.737069 1.3:+4498945 MS.gene063261:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAATACAAAAAAAAAAA+AGG - chr1.3:4497376-4497395 None:intergenic 10.0%
!!! ACAAAATTTTAATTCATAAA+AGG + chr1.3:4497075-4497094 MS.gene063261:intron 10.0%
!!! CAAAATTTTAATTCATAAAA+GGG + chr1.3:4497076-4497095 MS.gene063261:intron 10.0%
!!! CCTATAAATTTTTTATAAAA+AGG + chr1.3:4499851-4499870 MS.gene063261:intron 10.0%
!!! CCTTTTTATAAAAAATTTAT+AGG - chr1.3:4499854-4499873 None:intergenic 10.0%
!! AAATTATCCTTATTAACTAT+TGG - chr1.3:4500065-4500084 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr1.3:4500064-4500083 MS.gene063261:intron 15.0%
!! GTCAAAAAAAATAAATTAAC+AGG - chr1.3:4498763-4498782 None:intergenic 15.0%
!! TTAAACTAAAAACAATTCTT+TGG + chr1.3:4497329-4497348 MS.gene063261:intron 15.0%
!!! AACAAAAAAGCATTATATTA+TGG - chr1.3:4497843-4497862 None:intergenic 15.0%
!!! ATAATATTAGCAATTTTTTG+TGG - chr1.3:4498019-4498038 None:intergenic 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - chr1.3:4499938-4499957 None:intergenic 15.0%
!!! GTATGATTTAAAATTTTGTA+AGG - chr1.3:4497210-4497229 None:intergenic 15.0%
!!! TCTTAATTTAGTTGTTTTAT+CGG + chr1.3:4500387-4500406 MS.gene063261:intron 15.0%
!!! TTAGATTTTTCTTATTTTCT+TGG + chr1.3:4496885-4496904 MS.gene063261:intron 15.0%
!! AAACAAAGTCAAATTCTTAT+GGG + chr1.3:4500343-4500362 MS.gene063261:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr1.3:4500055-4500074 MS.gene063261:intron 20.0%
!! AAATTCATTGATGAACATAA+CGG + chr1.3:4496261-4496280 MS.gene063261:CDS 20.0%
!! AACTTACATATTCATATAAC+TGG - chr1.3:4498558-4498577 None:intergenic 20.0%
!! ACAATACACCAAAAAATTAT+GGG - chr1.3:4497149-4497168 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr1.3:4499978-4499997 None:intergenic 20.0%
!! ATTAATTCTACTATGAAACT+AGG + chr1.3:4498583-4498602 MS.gene063261:intron 20.0%
!! TACAATACACCAAAAAATTA+TGG - chr1.3:4497150-4497169 None:intergenic 20.0%
!! TATGTTCATCAATGAATTTA+AGG - chr1.3:4496260-4496279 None:intergenic 20.0%
!! TATTCAAAATCAATATGTGA+AGG - chr1.3:4498681-4498700 None:intergenic 20.0%
!!! ATCTTCTTTTTTTCAATGAA+GGG + chr1.3:4498037-4498056 MS.gene063261:intron 20.0%
!!! ATTTTCTTGGATATGTTATT+AGG + chr1.3:4496898-4496917 MS.gene063261:intron 20.0%
!!! CTTAATTTAGTTGTTTTATC+GGG + chr1.3:4500388-4500407 MS.gene063261:intron 20.0%
!!! TAATGATGTACTTTAATTTG+TGG + chr1.3:4496805-4496824 MS.gene063261:intron 20.0%
!!! TAGTTTTAAAAGTAGTACTT+TGG - chr1.3:4500041-4500060 None:intergenic 20.0%
!!! TATATTTCGTATGACTTTTA+AGG - chr1.3:4497617-4497636 None:intergenic 20.0%
!!! TATCTTCTTTTTTTCAATGA+AGG + chr1.3:4498036-4498055 MS.gene063261:intron 20.0%
!!! TCCAAGTAATGTTTTAAAAA+TGG - chr1.3:4499547-4499566 None:intergenic 20.0%
!!! TCCATTTTTAAAACATTACT+TGG + chr1.3:4499543-4499562 MS.gene063261:intron 20.0%
! AATCAAACTCAGTTAATCAT+GGG - chr1.3:4497941-4497960 None:intergenic 25.0%
! ACGAATAATAGACATGTTAT+AGG - chr1.3:4500246-4500265 None:intergenic 25.0%
! ATGACAATAGTAAATGTTTG+TGG + chr1.3:4498321-4498340 MS.gene063261:intron 25.0%
! ATTGATATATTGAGTACTCT+TGG - chr1.3:4497791-4497810 None:intergenic 25.0%
! CAAACAAAGTCAAATTCTTA+TGG + chr1.3:4500342-4500361 MS.gene063261:intron 25.0%
! CAATCATTGGTGTAATAATA+TGG + chr1.3:4497807-4497826 MS.gene063261:intron 25.0%
! CTTATAATATATCCATAAGC+TGG + chr1.3:4499795-4499814 MS.gene063261:intron 25.0%
! GTAAACAATCCATACAAATT+TGG - chr1.3:4500420-4500439 None:intergenic 25.0%
! GTACTCAATATATCAATCAT+TGG + chr1.3:4497794-4497813 MS.gene063261:intron 25.0%
! TAACACTCTAATTCTTTCAT+TGG + chr1.3:4498373-4498392 MS.gene063261:intron 25.0%
! TAATCAAACTCAGTTAATCA+TGG - chr1.3:4497942-4497961 None:intergenic 25.0%
! TGAATTCGACATATAGATTA+GGG + chr1.3:4496286-4496305 MS.gene063261:CDS 25.0%
! TGATCAAGCACATAAAAATT+TGG - chr1.3:4500455-4500474 None:intergenic 25.0%
! TGATTAACTGAGTTTGATTA+AGG + chr1.3:4497942-4497961 MS.gene063261:intron 25.0%
! TGCATTTGTTTGTTCAATAT+GGG + chr1.3:4497518-4497537 MS.gene063261:intron 25.0%
! TTATTTAAACTGTTTGATCG+TGG - chr1.3:4499467-4499486 None:intergenic 25.0%
! TTGAATAAAAATCATCTGTC+TGG + chr1.3:4498694-4498713 MS.gene063261:intron 25.0%
! TTGAATTCGACATATAGATT+AGG + chr1.3:4496285-4496304 MS.gene063261:CDS 25.0%
! TTGATATATTGAGTACTCTT+GGG - chr1.3:4497790-4497809 None:intergenic 25.0%
! TTGCATTTGTTTGTTCAATA+TGG + chr1.3:4497517-4497536 MS.gene063261:intron 25.0%
!! AATTTTATACTGTGTTGCAT+TGG + chr1.3:4498606-4498625 MS.gene063261:intron 25.0%
!! ATTTTATACTGTGTTGCATT+GGG + chr1.3:4498607-4498626 MS.gene063261:intron 25.0%
!! CATAAGAATTTGACTTTGTT+TGG - chr1.3:4500344-4500363 None:intergenic 25.0%
!! TTAAGGAACATGATAGTTTT+TGG + chr1.3:4497959-4497978 MS.gene063261:intron 25.0%
!! TTTAAGGTAGACATGATTAA+AGG - chr1.3:4497601-4497620 None:intergenic 25.0%
!!! ATTTTAATGATCTGAGAGTT+AGG - chr1.3:4497254-4497273 None:intergenic 25.0%
!!! CTTTGTTTTGTAGTCATATA+AGG + chr1.3:4497408-4497427 MS.gene063261:intron 25.0%
!!! TTCATTGGTTTTAAACTGTT+TGG + chr1.3:4498388-4498407 MS.gene063261:intron 25.0%
!!! TTTTTGATTGGATTTTCACT+TGG + chr1.3:4499351-4499370 MS.gene063261:intron 25.0%
AAACATGGAAAATCCTACAA+CGG + chr1.3:4496192-4496211 MS.gene063261:CDS 30.0%
ACGTAGATAATCATGTAACA+TGG + chr1.3:4497729-4497748 MS.gene063261:intron 30.0%
AGTAAAAGATAAGGTTGACT+TGG - chr1.3:4499323-4499342 None:intergenic 30.0%
ATACAATACACCAAGAAACT+GGG - chr1.3:4497183-4497202 None:intergenic 30.0%
ATCAAACTCAGTTAATCATG+GGG - chr1.3:4497940-4497959 None:intergenic 30.0%
ATCCATGTGTAACAATATCT+GGG + chr1.3:4496765-4496784 MS.gene063261:intron 30.0%
ATGAAATCCCAAAGCAAATA+AGG - chr1.3:4497004-4497023 None:intergenic 30.0%
ATGCAAGCAAGTAAAAGATA+AGG - chr1.3:4499332-4499351 None:intergenic 30.0%
ATTGGATTGTGAGAAATTCA+TGG + chr1.3:4498943-4498962 MS.gene063261:CDS 30.0%
CAGAAAATGGGAAAGATTAT+TGG + chr1.3:4498925-4498944 MS.gene063261:CDS 30.0%
CATTACTTGGAACTAATTGT+TGG + chr1.3:4499556-4499575 MS.gene063261:intron 30.0%
CCAATTTGAGCTGTTTAAAA+CGG - chr1.3:4499437-4499456 None:intergenic 30.0%
CCATCTTATCCAATTAAGAA+TGG + chr1.3:4499053-4499072 MS.gene063261:CDS 30.0%
CCATGTTATGATTGATTGAT+AGG - chr1.3:4497565-4497584 None:intergenic 30.0%
CCATTCTTAATTGGATAAGA+TGG - chr1.3:4499056-4499075 None:intergenic 30.0%
CCTATCAATCAATCATAACA+TGG + chr1.3:4497562-4497581 MS.gene063261:intron 30.0%
GCAAATCAAAATCAATCGTA+TGG - chr1.3:4497301-4497320 None:intergenic 30.0%
GGAATAAATAAGATTGTGAC+AGG + chr1.3:4498096-4498115 MS.gene063261:CDS 30.0%
GGGAATTATCCAAATTTGTA+TGG + chr1.3:4500408-4500427 MS.gene063261:intron 30.0%
TACTTCTGCTCAAGAAATAA+AGG - chr1.3:4497886-4497905 None:intergenic 30.0%
TTGGATTGTGAGAAATTCAT+GGG + chr1.3:4498944-4498963 MS.gene063261:CDS 30.0%
! AGAGTATAGAAGCAAGTTTT+TGG + chr1.3:4496338-4496357 MS.gene063261:CDS 30.0%
! ATTACTGATGATGAACTCAA+AGG - chr1.3:4498208-4498227 None:intergenic 30.0%
! ATTTTTATGTGCTTGATCAC+AGG + chr1.3:4500456-4500475 MS.gene063261:intron 30.0%
! GAGTATAGAAGCAAGTTTTT+GGG + chr1.3:4496339-4496358 MS.gene063261:CDS 30.0%
! TACTTGCTTGCATTTTTGAT+TGG + chr1.3:4499339-4499358 MS.gene063261:intron 30.0%
! TGGATTTCCTTATTTGCTTT+GGG + chr1.3:4496994-4497013 MS.gene063261:intron 30.0%
! TTTGAGTTCATCATCAGTAA+TGG + chr1.3:4498207-4498226 MS.gene063261:CDS 30.0%
! TTTTTATGTGCTTGATCACA+GGG + chr1.3:4500457-4500476 MS.gene063261:intron 30.0%
!! CTAATTGTTGGCTACTATTT+TGG + chr1.3:4499568-4499587 MS.gene063261:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr1.3:4500146-4500165 None:intergenic 30.0%
!!! TTTTGCTTGTTGATTTGTCT+GGG - chr1.3:4496128-4496147 None:intergenic 30.0%
AAACGTAAAGACTTCAGTCA+TGG + chr1.3:4499406-4499425 MS.gene063261:intron 35.0%
AAAGTCCAAATGAACGCAAA+AGG - chr1.3:4499616-4499635 None:intergenic 35.0%
AACCGTAGGATGAAGAAATT+GGG + chr1.3:4496378-4496397 MS.gene063261:CDS 35.0%
AAGTCCAAATGAACGCAAAA+GGG - chr1.3:4499615-4499634 None:intergenic 35.0%
AATTGCCTGAATCTGTTGAT+TGG + chr1.3:4496442-4496461 MS.gene063261:CDS 35.0%
AATTTCTTCATCCTACGGTT+CGG - chr1.3:4496378-4496397 None:intergenic 35.0%
AGTCTTTACGTTTCAATGTC+CGG - chr1.3:4499399-4499418 None:intergenic 35.0%
ATTCCATTTGTCTCTTGTCA+GGG + chr1.3:4498840-4498859 MS.gene063261:intron 35.0%
CAAATGCAAACCAAGAATTC+TGG - chr1.3:4497506-4497525 None:intergenic 35.0%
CAATGAACAGACACTATCTA+CGG - chr1.3:4499495-4499514 None:intergenic 35.0%
CAGATATTGTTACACATGGA+TGG - chr1.3:4496766-4496785 None:intergenic 35.0%
CATACAATACACCAAGAAAC+TGG - chr1.3:4497184-4497203 None:intergenic 35.0%
CATCCATGTGTAACAATATC+TGG + chr1.3:4496764-4496783 MS.gene063261:intron 35.0%
CCTAAAATCACCAGAATTCT+TGG + chr1.3:4497493-4497512 MS.gene063261:intron 35.0%
CTTGATCCTGATAATTCATC+TGG + chr1.3:4496974-4496993 MS.gene063261:intron 35.0%
GGAAATCCAGATGAATTATC+AGG - chr1.3:4496983-4497002 None:intergenic 35.0%
GGCTATTGAAGATAATGTGA+AGG - chr1.3:4498742-4498761 None:intergenic 35.0%
GTAGTCATATAAGGTCTGTT+TGG + chr1.3:4497417-4497436 MS.gene063261:intron 35.0%
GTGGAAGATAGTTAATCAGT+AGG + chr1.3:4498340-4498359 MS.gene063261:intron 35.0%
GTTTAGGTGAGAAAGACAAA+AGG + chr1.3:4496214-4496233 MS.gene063261:CDS 35.0%
TATTCCATTTGTCTCTTGTC+AGG + chr1.3:4498839-4498858 MS.gene063261:intron 35.0%
TGGATTGTGAGAAATTCATG+GGG + chr1.3:4498945-4498964 MS.gene063261:CDS 35.0%
TGTGATACATCATACAACGA+AGG + chr1.3:4498156-4498175 MS.gene063261:CDS 35.0%
TGTTCCTGCTTATGATGAAT+TGG + chr1.3:4498468-4498487 MS.gene063261:CDS 35.0%
TGTTGCTGTATTTACGAGTA+TGG + chr1.3:4499170-4499189 MS.gene063261:CDS 35.0%
TTAATGATCTGAGAGTTAGG+AGG - chr1.3:4497251-4497270 None:intergenic 35.0%
TTCACTATCAGAACAAGAAC+TGG + chr1.3:4498128-4498147 MS.gene063261:CDS 35.0%
TTCCCAGATATTGTTACACA+TGG - chr1.3:4496770-4496789 None:intergenic 35.0%
TTGACTTTGCTTCACAAGAT+TGG + chr1.3:4498778-4498797 MS.gene063261:intron 35.0%
TTGGATACGGTACAGAAAAT+GGG + chr1.3:4498913-4498932 MS.gene063261:CDS 35.0%
TTTATCTGCTGAGACTGTTT+GGG + chr1.3:4500203-4500222 MS.gene063261:intron 35.0%
TTTCAATGAAGGGAGTTGTT+GGG + chr1.3:4498047-4498066 MS.gene063261:intron 35.0%
TTTGGATTTCGTTTGCAGTA+TGG + chr1.3:4497347-4497366 MS.gene063261:intron 35.0%
! CCAAGAATTCTGGTGATTTT+AGG - chr1.3:4497496-4497515 None:intergenic 35.0%
! CCTTAAAAGTTTTACGACGA+CGG + chr1.3:4497658-4497677 MS.gene063261:intron 35.0%
! CTGGATTTCCTTATTTGCTT+TGG + chr1.3:4496993-4497012 MS.gene063261:intron 35.0%
! GATAATCTGAAACCAGCTTA+TGG - chr1.3:4499810-4499829 None:intergenic 35.0%
! GTTTCTTGGTGTATTGTATG+TGG + chr1.3:4497184-4497203 MS.gene063261:intron 35.0%
! TTTTCAATGAAGGGAGTTGT+TGG + chr1.3:4498046-4498065 MS.gene063261:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr1.3:4499912-4499931 None:intergenic 35.0%
!! CAATGCTTTAAAAGCCAAAC+CGG + chr1.3:4499377-4499396 MS.gene063261:intron 35.0%
!! CCGTTTTAAACAGCTCAAAT+TGG + chr1.3:4499434-4499453 MS.gene063261:intron 35.0%
!! TACCATCAATAGCCTTGTAA+GGG - chr1.3:4498257-4498276 None:intergenic 35.0%
!!! CTTTTGCTTGTTGATTTGTC+TGG - chr1.3:4496129-4496148 None:intergenic 35.0%
!!! GACACTCATTTTGAAACAGA+GGG + chr1.3:4500151-4500170 MS.gene063261:intron 35.0%
AAAAATTATGGGACCCTTCC+CGG - chr1.3:4497138-4497157 None:intergenic 40.0%
AAAATCATCTGTCTGGCAAG+TGG + chr1.3:4498701-4498720 MS.gene063261:intron 40.0%
AACAGACACTATCTACGGTT+CGG - chr1.3:4499490-4499509 None:intergenic 40.0%
AAGGCCAATTCATCATAAGC+AGG - chr1.3:4498475-4498494 None:intergenic 40.0%
ACTATCAGAACAAGAACTGG+TGG + chr1.3:4498131-4498150 MS.gene063261:CDS 40.0%
ATTGTGAGAAATTCATGGGG+TGG + chr1.3:4498948-4498967 MS.gene063261:CDS 40.0%
ATTTACCGGTAGATGTGGAA+CGG + chr1.3:4498866-4498885 MS.gene063261:CDS 40.0%
CACCCAATTTCTTCATCCTA+CGG - chr1.3:4496383-4496402 None:intergenic 40.0%
CATAGTCAACACTTCTTCGT+TGG - chr1.3:4496154-4496173 None:intergenic 40.0%
CATATAGATTAGGGTTGACC+CGG + chr1.3:4496295-4496314 MS.gene063261:CDS 40.0%
CATCTTGTTCTTACCACCAA+AGG - chr1.3:4500542-4500561 None:intergenic 40.0%
GAACCGTAGGATGAAGAAAT+TGG + chr1.3:4496377-4496396 MS.gene063261:CDS 40.0%
GAAGAGTGGTTAGTGAAACA+TGG + chr1.3:4496177-4496196 MS.gene063261:CDS 40.0%
GAGTTCATCATCAGTAATGG+TGG + chr1.3:4498210-4498229 MS.gene063261:CDS 40.0%
GGAAAATCCTACAACGGTTT+AGG + chr1.3:4496198-4496217 MS.gene063261:CDS 40.0%
GGGTTCTGTCCATTCTTAAT+TGG - chr1.3:4499065-4499084 None:intergenic 40.0%
GTTGGATACGGTACAGAAAA+TGG + chr1.3:4498912-4498931 MS.gene063261:CDS 40.0%
GTTTATCTGCTGAGACTGTT+TGG + chr1.3:4500202-4500221 MS.gene063261:intron 40.0%
TAAAACTCCCCGCATAAGTA+GGG + chr1.3:4497111-4497130 MS.gene063261:intron 40.0%
TACCCTTACAAGGCTATTGA+TGG + chr1.3:4498252-4498271 MS.gene063261:CDS 40.0%
TCATACAACGAAGGATGCAA+TGG + chr1.3:4498165-4498184 MS.gene063261:CDS 40.0%
TCTTGTCAGGGTGTATTTAC+CGG + chr1.3:4498852-4498871 MS.gene063261:intron 40.0%
TGAAGAAATTGGGTGGTGTA+AGG + chr1.3:4496388-4496407 MS.gene063261:CDS 40.0%
TGAAGAGGATTACCCTTACA+AGG + chr1.3:4498242-4498261 MS.gene063261:CDS 40.0%
TGAATGACTTCACTCCCAAT+GGG - chr1.3:4500492-4500511 None:intergenic 40.0%
TGTAAGATATCCATCAGCTG+TGG - chr1.3:4497473-4497492 None:intergenic 40.0%
TTACGTTTCAATGTCCGGTT+TGG - chr1.3:4499394-4499413 None:intergenic 40.0%
TTCCTCCAATCAACAGATTC+AGG - chr1.3:4496450-4496469 None:intergenic 40.0%
TTGAATGACTTCACTCCCAA+TGG - chr1.3:4500493-4500512 None:intergenic 40.0%
TTTCTCACCTAAACCGTTGT+AGG - chr1.3:4496208-4496227 None:intergenic 40.0%
! ATGGAAGATCTTGCTTTGAG+TGG + chr1.3:4499189-4499208 MS.gene063261:CDS 40.0%
! ATGTCCCTTTTGCGTTCATT+TGG + chr1.3:4499608-4499627 MS.gene063261:intron 40.0%
! CCGTCGTCGTAAAACTTTTA+AGG - chr1.3:4497661-4497680 None:intergenic 40.0%
! TGAATCTGTTGATTGGAGGA+AGG + chr1.3:4496449-4496468 MS.gene063261:CDS 40.0%
! TGGAAGATCTTGCTTTGAGT+GGG + chr1.3:4499190-4499209 MS.gene063261:CDS 40.0%
! TGTTGACTATGTACGAAGAG+TGG + chr1.3:4496163-4496182 MS.gene063261:CDS 40.0%
!! CTACCATCAATAGCCTTGTA+AGG - chr1.3:4498258-4498277 None:intergenic 40.0%
!! TGATGAATTGGCCTTGCAAA+AGG + chr1.3:4498480-4498499 MS.gene063261:CDS 40.0%
!!! CGACACTCATTTTGAAACAG+AGG + chr1.3:4500150-4500169 MS.gene063261:intron 40.0%
!!! CGGTTTGGCTTTTAAAGCAT+TGG - chr1.3:4499379-4499398 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr1.3:4499908-4499927 None:intergenic 40.0%
!!! GGAAGGGTCCCATAATTTTT+TGG + chr1.3:4497138-4497157 MS.gene063261:intron 40.0%
AAATTCATGGGGTGGTAGCT+GGG + chr1.3:4498956-4498975 MS.gene063261:CDS 45.0%
ACACCCTGACAAGAGACAAA+TGG - chr1.3:4498846-4498865 None:intergenic 45.0%
ACAGGGCAAGAATAACCCAT+TGG + chr1.3:4500474-4500493 MS.gene063261:intron 45.0%
ACTGGTTGAACTGTCTTGTC+TGG + chr1.3:4499519-4499538 MS.gene063261:intron 45.0%
AGGAGATGATCGACATGTCT+AGG - chr1.3:4496092-4496111 None:intergenic 45.0%
AGTATCATCACCACAGCTGA+TGG + chr1.3:4497460-4497479 MS.gene063261:intron 45.0%
ATGGTAGATGTGACCAGAAC+AGG + chr1.3:4498271-4498290 MS.gene063261:CDS 45.0%
CACAGACAGGATACTCATGA+GGG - chr1.3:4499268-4499287 None:intergenic 45.0%
CAGGGCAAGAATAACCCATT+GGG + chr1.3:4500475-4500494 MS.gene063261:intron 45.0%
CCAAGTAACTAACCCTGTTC+TGG - chr1.3:4498287-4498306 None:intergenic 45.0%
CGCAAAAGGGACATATCAAC+AGG - chr1.3:4499602-4499621 None:intergenic 45.0%
CGTAGGATGAAGAAATTGGG+TGG + chr1.3:4496381-4496400 MS.gene063261:CDS 45.0%
CTAAAACTCCCCGCATAAGT+AGG + chr1.3:4497110-4497129 MS.gene063261:intron 45.0%
CTCAGTTAATCATGGGGTGA+AGG - chr1.3:4497934-4497953 None:intergenic 45.0%
GGAGATGATCGACATGTCTA+GGG - chr1.3:4496091-4496110 None:intergenic 45.0%
GGCTAGTGAAACTGTGAAAG+TGG - chr1.3:4496070-4496089 None:intergenic 45.0%
GGTGTATTTACCGGTAGATG+TGG + chr1.3:4498861-4498880 MS.gene063261:CDS 45.0%
GTCAAAGACCAAGCAAGTTG+TGG + chr1.3:4496489-4496508 MS.gene063261:CDS 45.0%
GTGTCTGTTCATTGCTCAAC+TGG + chr1.3:4499501-4499520 MS.gene063261:intron 45.0%
TACAACGAAGGATGCAATGG+TGG + chr1.3:4498168-4498187 MS.gene063261:CDS 45.0%
TAGTAGCTGTCACAGACAGA+TGG - chr1.3:4499128-4499147 None:intergenic 45.0%
TCACAGACAGGATACTCATG+AGG - chr1.3:4499269-4499288 None:intergenic 45.0%
TCGTGCTGGACTTTGTCTTA+AGG + chr1.3:4499292-4499311 MS.gene063261:CDS 45.0%
TGAGACTGTTTGGGAGAACA+TGG + chr1.3:4500212-4500231 MS.gene063261:intron 45.0%
TGGTAGATGTGACCAGAACA+GGG + chr1.3:4498272-4498291 MS.gene063261:CDS 45.0%
TTGATAGGTGAAGGTGGTGA+TGG - chr1.3:4499101-4499120 None:intergenic 45.0%
! AATCTAGCTTCAAGCAGAGC+AGG + chr1.3:4499008-4499027 MS.gene063261:CDS 45.0%
! AGTGCTTACCACAACTTGCT+TGG - chr1.3:4496500-4496519 None:intergenic 45.0%
! GGAAGATCTTGCTTTGAGTG+GGG + chr1.3:4499191-4499210 MS.gene063261:CDS 45.0%
! GTTTGCAACAGCCTTTTGCA+AGG - chr1.3:4498494-4498513 None:intergenic 45.0%
! TCTGTTGATTGGAGGAAGGA+AGG + chr1.3:4496453-4496472 MS.gene063261:CDS 45.0%
! TGCCTGAATCTGTTGATTGG+AGG + chr1.3:4496445-4496464 MS.gene063261:CDS 45.0%
!! AGGATGCAATGGTGGACTTA+TGG + chr1.3:4498176-4498195 MS.gene063261:CDS 45.0%
!! CCAGAACAGGGTTAGTTACT+TGG + chr1.3:4498284-4498303 MS.gene063261:intron 45.0%
!! GCTTGTTGATTTGTCTGGGT+GGG - chr1.3:4496124-4496143 None:intergenic 45.0%
!! TGCTTGTTGATTTGTCTGGG+TGG - chr1.3:4496125-4496144 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr1.3:4499909-4499928 None:intergenic 45.0%
!!! TAATTTTAAAATTAAATACA+AGG + chr1.3:4496853-4496872 MS.gene063261:intron 5.0%
AATCGTTATGCGCCACGTGT+CGG + chr1.3:4496414-4496433 MS.gene063261:CDS 50.0%
AATTCATGGGGTGGTAGCTG+GGG + chr1.3:4498957-4498976 MS.gene063261:CDS 50.0%
AGCTACTACAGCTGTGCTGA+AGG + chr1.3:4499140-4499159 MS.gene063261:CDS 50.0%
ATCCAACAGCTGCAACACCA+TGG - chr1.3:4498899-4498918 None:intergenic 50.0%
CAAAGATCGATCCGAACCGT+AGG + chr1.3:4496364-4496383 MS.gene063261:CDS 50.0%
CAGCAAGTAGCAGACTCAAG+AGG - chr1.3:4499224-4499243 None:intergenic 50.0%
CGCAGTCTTACCCAGTTTCT+TGG + chr1.3:4497170-4497189 MS.gene063261:intron 50.0%
CGTTAGTTAGATCCGCGAAC+CGG - chr1.3:4496317-4496336 None:intergenic 50.0%
GAAATTCATGGGGTGGTAGC+TGG + chr1.3:4498955-4498974 MS.gene063261:CDS 50.0%
GGCAATTTATCACCGACACG+TGG - chr1.3:4496429-4496448 None:intergenic 50.0%
GTTAGTTAGATCCGCGAACC+GGG - chr1.3:4496316-4496335 None:intergenic 50.0%
TAGCTGTCACAGACAGATGG+TGG - chr1.3:4499125-4499144 None:intergenic 50.0%
TCAAGCAGAGCAGGAAAGTG+TGG + chr1.3:4499017-4499036 MS.gene063261:CDS 50.0%
TCAGCAATCGCAGCTGTTGA+AGG + chr1.3:4498075-4498094 MS.gene063261:CDS 50.0%
! CAGACAGATGGTGGCTTGAT+AGG - chr1.3:4499116-4499135 None:intergenic 50.0%
! GATGGTGGCTTGATAGGTGA+AGG - chr1.3:4499110-4499129 None:intergenic 50.0%
! GGTGTTGCAGCTGTTGGATA+CGG + chr1.3:4498900-4498919 MS.gene063261:CDS 50.0%
! TAGTGCCGTTCCACATCTAC+CGG - chr1.3:4498874-4498893 None:intergenic 50.0%
!! AGGAAGGAAGGTGCTGTTGT+TGG + chr1.3:4496465-4496484 MS.gene063261:CDS 50.0%
!! TGGTGGCATTGACTCTGAAG+AGG + chr1.3:4498227-4498246 MS.gene063261:CDS 50.0%
ACCGCCTCCTTCAACAGCAA+CGG - chr1.3:4498527-4498546 None:intergenic 55.0%
CCTTCAACAGCAACGGCGAT+AGG - chr1.3:4498520-4498539 None:intergenic 55.0%
CTTCCCGGACCCTACTTATG+CGG - chr1.3:4497123-4497142 None:intergenic 55.0%
GCATAAGTAGGGTCCGGGAA+GGG + chr1.3:4497122-4497141 MS.gene063261:intron 55.0%
GGTGGCTTGATAGGTGAAGG+TGG - chr1.3:4499107-4499126 None:intergenic 55.0%
TGCTGTTGAAGGAGGCGGTA+GGG + chr1.3:4498528-4498547 MS.gene063261:CDS 55.0%
TGTGGAACGGCACTAGACCA+TGG + chr1.3:4498879-4498898 MS.gene063261:CDS 55.0%
TTACCACCAAAGGCCCAGTG+AGG - chr1.3:4500532-4500551 None:intergenic 55.0%
TTCCCGGACCCTACTTATGC+GGG - chr1.3:4497122-4497141 None:intergenic 55.0%
! ATCGCCGTTGCTGTTGAAGG+AGG + chr1.3:4498520-4498539 MS.gene063261:CDS 55.0%
! ATTAGGGTTGACCCGGTTCG+CGG + chr1.3:4496302-4496321 MS.gene063261:CDS 55.0%
! CCTATCGCCGTTGCTGTTGA+AGG + chr1.3:4498517-4498536 MS.gene063261:CDS 55.0%
! TTGCTGTTGAAGGAGGCGGT+AGG + chr1.3:4498527-4498546 MS.gene063261:CDS 55.0%
!! GACCATGGTGTTGCAGCTGT+TGG + chr1.3:4498894-4498913 MS.gene063261:CDS 55.0%
!! GTCTGGGTGGGTTTTGTCGT+AGG - chr1.3:4496112-4496131 None:intergenic 55.0%
!! GTGAAGGTGGTGATGGTCCA+GGG - chr1.3:4499094-4499113 None:intergenic 55.0%
!! GTGGTGATGGTCCAGGGTTA+GGG - chr1.3:4499088-4499107 None:intergenic 55.0%
!! TGGTGATGGTCCAGGGTTAG+GGG - chr1.3:4499087-4499106 None:intergenic 55.0%
AAGCCTCACTGGGCCTTTGG+TGG + chr1.3:4500526-4500545 MS.gene063261:CDS 60.0%
ACCAAAGGCCCAGTGAGGCT+TGG - chr1.3:4500527-4500546 None:intergenic 60.0%
CAACAGCAACGGCGATAGGC+TGG - chr1.3:4498516-4498535 None:intergenic 60.0%
CACTCCTGCCAAGCCTCACT+GGG + chr1.3:4500516-4500535 MS.gene063261:CDS 60.0%
CCAGCACGAGTGTCACAGAC+AGG - chr1.3:4499281-4499300 None:intergenic 60.0%
CCTGTCTGTGACACTCGTGC+TGG + chr1.3:4499278-4499297 MS.gene063261:CDS 60.0%
CGCATAAGTAGGGTCCGGGA+AGG + chr1.3:4497121-4497140 MS.gene063261:intron 60.0%
CTCCCCGCATAAGTAGGGTC+CGG + chr1.3:4497116-4497135 MS.gene063261:intron 60.0%
GGTGGTAGCTGGGGTGAACA+AGG + chr1.3:4498966-4498985 MS.gene063261:CDS 60.0%
GTGATGGTCCAGGGTTAGGG+GGG - chr1.3:4499085-4499104 None:intergenic 60.0%
TCCCCGCATAAGTAGGGTCC+GGG + chr1.3:4497117-4497136 MS.gene063261:intron 60.0%
TCCCGGACCCTACTTATGCG+GGG - chr1.3:4497121-4497140 None:intergenic 60.0%
! GCCGTTGCTGTTGAAGGAGG+CGG + chr1.3:4498523-4498542 MS.gene063261:CDS 60.0%
! GGTGATGGTCCAGGGTTAGG+GGG - chr1.3:4499086-4499105 None:intergenic 60.0%
!! GGTGAAGGTGGTGATGGTCC+AGG - chr1.3:4499095-4499114 None:intergenic 60.0%
!! GGTGGTGATGGTCCAGGGTT+AGG - chr1.3:4499089-4499108 None:intergenic 60.0%
!! TGCGGGGAGTTTTAGTGCGC+AGG - chr1.3:4497105-4497124 None:intergenic 60.0%
AAGGCCCAGTGAGGCTTGGC+AGG - chr1.3:4500523-4500542 None:intergenic 65.0%
GCACTCCTGCCAAGCCTCAC+TGG + chr1.3:4500515-4500534 MS.gene063261:CDS 65.0%
GCCAAGCCTCACTGGGCCTT+TGG + chr1.3:4500523-4500542 MS.gene063261:CDS 65.0%
GGACAGAACCCCCCTAACCC+TGG + chr1.3:4499074-4499093 MS.gene063261:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 4496027 4500573 4496027 ID=MS.gene063261
chr1.3 mRNA 4496027 4500573 4496027 ID=MS.gene063261.t1;Parent=MS.gene063261
chr1.3 exon 4496027 4496510 4496027 ID=MS.gene063261.t1.exon1;Parent=MS.gene063261.t1
chr1.3 CDS 4496027 4496510 4496027 ID=cds.MS.gene063261.t1;Parent=MS.gene063261.t1
chr1.3 exon 4498058 4498293 4498058 ID=MS.gene063261.t1.exon2;Parent=MS.gene063261.t1
chr1.3 CDS 4498058 4498293 4498058 ID=cds.MS.gene063261.t1;Parent=MS.gene063261.t1
chr1.3 exon 4498430 4498570 4498430 ID=MS.gene063261.t1.exon3;Parent=MS.gene063261.t1
chr1.3 CDS 4498430 4498570 4498430 ID=cds.MS.gene063261.t1;Parent=MS.gene063261.t1
chr1.3 exon 4498861 4499313 4498861 ID=MS.gene063261.t1.exon4;Parent=MS.gene063261.t1
chr1.3 CDS 4498861 4499313 4498861 ID=cds.MS.gene063261.t1;Parent=MS.gene063261.t1
chr1.3 exon 4500478 4500573 4500478 ID=MS.gene063261.t1.exon5;Parent=MS.gene063261.t1
chr1.3 CDS 4500478 4500573 4500478 ID=cds.MS.gene063261.t1;Parent=MS.gene063261.t1
Gene Sequence

>MS.gene063261

ATGGATTCAGCGATGAAACTCATGATCGTTCTCATCTTAGCCACTTTCACAGTTTCACTAGCCCTAGACATGTCGATCATCTCCTACGACAAAACCCACCCAGACAAATCAACAAGCAAAAGAACCAACGAAGAAGTGTTGACTATGTACGAAGAGTGGTTAGTGAAACATGGAAAATCCTACAACGGTTTAGGTGAGAAAGACAAAAGGTTCGAGATCTTCAAAGACAACCTTAAATTCATTGATGAACATAACGGTTTGAATTCGACATATAGATTAGGGTTGACCCGGTTCGCGGATCTAACTAACGAAGAGTATAGAAGCAAGTTTTTGGGAACAAAGATCGATCCGAACCGTAGGATGAAGAAATTGGGTGGTGTAAGGAGCAATCGTTATGCGCCACGTGTCGGTGATAAATTGCCTGAATCTGTTGATTGGAGGAAGGAAGGTGCTGTTGTTGGAGTCAAAGACCAAGCAAGTTGTGGTAAGCACTTCGATCACTTATCTTAAACACTTTCGATGTTTTTTACTTTTTTTTTCTTTTTCTTTTAAATAAAAAATAAATAAAGCTAAATTCTTTTCTTTGTTTCTAATCATTCTTTGATTTTTTTCTCAAAAAAAAAAATCATTCTTTGATTTTAAATTAATAATTAATAATATCTACTGTCTGTTACTATTGACTTATTGTGAATATTATTTTGTTTTTAAATTTTATGATCTTATCTTTGATTTACTGCCATCCATGTGTAACAATATCTGGGAAAAAATATTTCAGTGTTAATGATGTACTTTAATTTGTGGCTGAAAAATATTGATTTTATTTATTTAATTTTAAAATTAAATACAAGGCTTTTAATTTTAGATTTTTCTTATTTTCTTGGATATGTTATTAGGATTTCATGATTCTTATTTGTGATCTGACTATGATATGAATCAAAGTATCAACTCTTGATCCTGATAATTCATCTGGATTTCCTTATTTGCTTTGGGATTTCATGTTTTATAGTGAAATTTACAAAAATAAATAAATAAATTGAAGAAGAAACTTACAAAATTTTAATTCATAAAAGGGCAACCTGCGCACTAAAACTCCCCGCATAAGTAGGGTCCGGGAAGGGTCCCATAATTTTTTGGTGTATTGTACGCAGTCTTACCCAGTTTCTTGGTGTATTGTATGTGGCCTTACAAAATTTTAAATCATACACACTGATAATCAATTGTCCTCCTAACTCTCAGATCATTAAAATTGTTTGACTTTAATTATACATAGACCATACGATTGATTTTGATTTGCTGATAGTGTTAAACTAAAAACAATTCTTTGGATTTCGTTTGCAGTATGGATTCCTTTTTTTTTTTTGTATTACTTAATACTTAAGTTCTTTGTTTTGTAGTCATATAAGGTCTGTTTGGAAAGTAAATACAGTATAAAGAGTATCATCACCACAGCTGATGGATATCTTACACCTAAAATCACCAGAATTCTTGGTTTGCATTTGTTTGTTCAATATGGGTTTAATTGATATGCACTTTTACCTATCAATCAATCATAACATGGCTCGAAATATACGCCTTTAATCATGTCTACCTTAAAAGTCATACGAAATATATATTTTGTGACTGTTTAACTACCTTAAAAGTTTTACGACGACGGTGCATCAAAATTAATCTCTTTGAATATTCTCAAAATTGTTAAGAGAACACGTAGATAATCATGTAACATGGTTTGTGCTTGTCAATCAGACTCAGATTCTTCAGCTCCCAAGAGTACTCAATATATCAATCATTGGTGTAATAATATGGCTCTATCTTACCATAATATAATGCTTTTTTGTTTGTCAATAAATAATGAATATCCTTTATTTCTTGAGCAGAAGTATTAATCACTCTTCTAATGAAAAAGTCCTTCACCCCATGATTAACTGAGTTTGATTAAGGAACATGATAGTTTTTGGCTTCTTTTAATTGTATTCATACAATTTAATTTGTCCACAAAAAATTGCTAATATTATCTTCTTTTTTTCAATGAAGGGAGTTGTTGGGCATTCTCAGCAATCGCAGCTGTTGAAGGAATAAATAAGATTGTGACAGGAGATCTAATTTCACTATCAGAACAAGAACTGGTGGACTGTGATACATCATACAACGAAGGATGCAATGGTGGACTTATGGATTACGCCTTTGAGTTCATCATCAGTAATGGTGGCATTGACTCTGAAGAGGATTACCCTTACAAGGCTATTGATGGTAGATGTGACCAGAACAGGGTTAGTTACTTGGTCATTGATTTTTTAATGACAATAGTAAATGTTTGTGGAAGATAGTTAATCAGTAGGACTAGTTAGTTAACACTCTAATTCTTTCATTGGTTTTAAACTGTTTGGTTATTCTCTTTGTGCGCAGAAAAATGCTAAAGTTGTTACAATTGATGACTATGAAGATGTTCCTGCTTATGATGAATTGGCCTTGCAAAAGGCTGTTGCAAACCAGCCTATCGCCGTTGCTGTTGAAGGAGGCGGTAGGGAATTCCAGTTATATGAATATGTAAGTTTCTAAATTAATTCTACTATGAAACTAGGAATTTTATACTGTGTTGCATTGGGATAACGTCATAATCAATACTGCAAACGTGTATAAATTGTTATAACTATCCTTCACATATTGATTTTGAATAAAAATCATCTGTCTGGCAAGTGGTTTTGCTATAACTATCCTTCACATTATCTTCAATAGCCTGTTAATTTATTTTTTTTGACTTTGCTTCACAAGATTGGTACATACTGTTATATTTCATGAACTTTCTGTTTGAATGTATTCCATTTGTCTCTTGTCAGGGTGTATTTACCGGTAGATGTGGAACGGCACTAGACCATGGTGTTGCAGCTGTTGGATACGGTACAGAAAATGGGAAAGATTATTGGATTGTGAGAAATTCATGGGGTGGTAGCTGGGGTGAACAAGGTTACATCAGACTCGAACGTAATCTAGCTTCAAGCAGAGCAGGAAAGTGTGGAATTGCGATCGAGCCATCTTATCCAATTAAGAATGGACAGAACCCCCCTAACCCTGGACCATCACCACCTTCACCTATCAAGCCACCATCTGTCTGTGACAGCTACTACAGCTGTGCTGAAGGCTCTACTTGTTGCTGTATTTACGAGTATGGAAGATCTTGCTTTGAGTGGGGATGCTGTCCTCTTGAGTCTGCTACTTGCTGTGATGATCACTACAGTTGCTGCCCTCATGAGTATCCTGTCTGTGACACTCGTGCTGGACTTTGTCTTAAGGTATGTCCAAGTCAACCTTATCTTTTACTTGCTTGCATTTTTGATTGGATTTTCACTTGGAACCAATGCTTTAAAAGCCAAACCGGACATTGAAACGTAAAGACTTCAGTCATGGTTCAACCGTTTTAAACAGCTCAAATTGGAATGAAACCACGATCAAACAGTTTAAATAACCGAACCGTAGATAGTGTCTGTTCATTGCTCAACTGGTTGAACTGTCTTGTCTGGTTCCATTTTTAAAACATTACTTGGAACTAATTGTTGGCTACTATTTTGGATTTTTTTCCTGTTGATATGTCCCTTTTGCGTTCATTTGGACTTTTTGAATTATATTTTATGTTTTCAGTTAAAATATGATTAGTTTTAGCAGAAAAAACAATTTCTCAATGTTAAGTGTTTGTAAGTGAGTTAAATGAGATAGTTTTCTTAAAAAATTGAGATGCATTATGCATATTATGTTTAGAAGAGCTTATAAAGATAGCTTATAATATATCCATAAGCTGGTTTCAGATTATCGTCATAAGTTTTATGTGATAGCCTATAAATTTTTTATAAAAAGGCTTATGCACTATGCAGAGTTAAACTAATACTCCCTCCGTTTCAAAATGAGTGTCGCTTTAGCCAAAAAAATTTGTTTCAAAATGAATGTCACTTTCAGTTTCCAATGCAATAATAACTTTTTCTTTTCAATTGTACCCTCCAATTAATGCTTTGCACACTACTTCCAAAGTACTACTTTTAAAACTAACCAATAGTTAATAAGGATAATTTGGTAAAATAATCATTTTCTTTCTTTTAATCATTGCATTTCTTAATATGTGTGTAAACACCTAAAACGACACTCATTTTGAAACAGAGGGAGTAAGCTCTAAGTATTATATTATTTGAGTTTATCTGCTGAGACTGTTTGGGAGAACATGGAAAAATAGCCTATAACATGTCTATTATTCGTTTTCTTAATATTTTCATAATTCAGAATAACTTAAGAATACAACTTATAGCTTGAATAAAAACAATTCGACTTTATCCAAACAAAGTCAAATTCTTATGGGAAAAGAACTTATAGAACAAGCTCTTAATTTAGTTGTTTTATCGGGAATTATCCAAATTTGTATGGATTGTTTACACTTTTGCTTATCCAAATTTTTATGTGCTTGATCACAGGGCAAGAATAACCCATTGGGAGTGAAGTCATTCAAACGCACTCCTGCCAAGCCTCACTGGGCCTTTGGTGGTAAGAACAAGATGAGCAATGCTTAA
Protein sequence

>MS.gene063261.t1

MDSAMKLMIVLILATFTVSLALDMSIISYDKTHPDKSTSKRTNEEVLTMYEEWLVKHGKSYNGLGEKDKRFEIFKDNLKFIDEHNGLNSTYRLGLTRFADLTNEEYRSKFLGTKIDPNRRMKKLGGVRSNRYAPRVGDKLPESVDWRKEGAVVGVKDQASCGSCWAFSAIAAVEGINKIVTGDLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIISNGGIDSEEDYPYKAIDGRCDQNRKNAKVVTIDDYEDVPAYDELALQKAVANQPIAVAVEGGGREFQLYEYGVFTGRCGTALDHGVAAVGYGTENGKDYWIVRNSWGGSWGEQGYIRLERNLASSRAGKCGIAIEPSYPIKNGQNPPNPGPSPPSPIKPPSVCDSYYSCAEGSTCCCIYEYGRSCFEWGCCPLESATCCDDHYSCCPHEYPVCDTRAGLCLKGKNNPLGVKSFKRTPAKPHWAFGGKNKMSNA