AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063262

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063262.t1 MTR_1g018840 97.655 469 11 0 1 469 6 474 0.0 959
MS.gene063262.t1 MTR_1g018840 97.489 438 11 0 1 438 6 443 0.0 892
MS.gene063262.t1 MTR_3g102220 72.043 465 127 2 7 469 11 474 0.0 687
MS.gene063262.t1 MTR_1g107550 67.972 434 132 3 22 454 26 453 0.0 598
MS.gene063262.t1 MTR_4g094918 64.543 361 114 1 3 363 2 348 6.68e-177 500
MS.gene063262.t1 MTR_3g112430 51.020 392 181 6 49 438 35 417 6.68e-132 389
MS.gene063262.t1 MTR_3g116080 52.339 342 151 4 16 357 19 348 7.97e-127 372
MS.gene063262.t1 MTR_3g075390 50.411 365 171 7 11 373 6 362 3.61e-123 363
MS.gene063262.t1 MTR_4g104370 49.862 363 172 7 13 373 6 360 1.03e-117 349
MS.gene063262.t1 MTR_2g016180 44.787 422 208 8 42 448 43 454 4.05e-117 352
MS.gene063262.t1 MTR_2g016270 44.286 420 198 8 42 448 43 439 7.46e-115 346
MS.gene063262.t1 MTR_4g079470 51.227 326 142 7 37 355 28 343 2.31e-112 335
MS.gene063262.t1 MTR_4g079770 53.035 313 130 7 50 355 41 343 4.63e-112 334
MS.gene063262.t1 MTR_5g022560 48.864 352 151 8 16 355 8 342 7.79e-112 334
MS.gene063262.t1 MTR_4g047610 50.462 325 145 6 38 355 26 341 1.50e-110 330
MS.gene063262.t1 MTR_4g079800 52.396 313 132 7 50 355 41 343 1.62e-110 330
MS.gene063262.t1 MTR_2g075830 48.980 343 153 7 19 355 13 339 1.13e-109 328
MS.gene063262.t1 MTR_4g080730 52.597 308 135 6 50 355 40 338 3.91e-108 324
MS.gene063262.t1 MTR_4g080700 51.948 308 137 6 50 355 40 338 9.58e-107 320
MS.gene063262.t1 MTR_4g079440 45.559 349 179 6 10 356 5 344 2.46e-106 320
MS.gene063262.t1 MTR_4g107930 50.467 321 140 8 45 355 32 343 4.87e-106 319
MS.gene063262.t1 MTR_2g090890 46.307 352 166 7 14 358 3 338 5.42e-106 318
MS.gene063262.t1 MTR_4g080360 47.664 321 161 6 39 356 25 341 6.38e-100 303
MS.gene063262.t1 MTR_2g083930 45.342 322 172 4 38 356 23 343 9.43e-98 298
MS.gene063262.t1 MTR_7g078600 46.326 313 149 10 50 358 42 339 6.43e-86 267
MS.gene063262.t1 MTR_7g079230 43.077 325 166 8 37 355 23 334 5.73e-85 265
MS.gene063262.t1 MTR_2g015850 47.797 295 145 7 64 356 76 363 1.33e-80 254
MS.gene063262.t1 MTR_4g065077 40.872 367 183 14 5 357 11 357 7.52e-76 242
MS.gene063262.t1 MTR_2g015920 37.228 368 207 12 9 362 8 365 9.25e-71 229
MS.gene063262.t1 MTR_2g015930 38.950 362 195 13 11 357 9 359 3.42e-69 224
MS.gene063262.t1 MTR_4g125300 38.227 361 190 12 11 356 6 348 9.65e-67 218
MS.gene063262.t1 MTR_2g067900 42.902 317 165 11 50 356 16 326 2.59e-66 216
MS.gene063262.t1 MTR_8g086470 37.741 363 184 13 5 357 27 357 6.98e-66 216
MS.gene063262.t1 MTR_4g071060 38.983 354 168 12 13 336 6 341 3.74e-63 209
MS.gene063262.t1 MTR_1g023210 41.611 298 148 8 56 336 57 345 4.63e-63 209
MS.gene063262.t1 MTR_2g067560 39.255 349 186 15 48 380 14 352 1.34e-54 196
MS.gene063262.t1 MTR_1g094135 33.962 371 201 10 4 348 6 358 1.50e-54 187
MS.gene063262.t1 MTR_2g064475 37.101 345 169 14 48 354 14 348 3.31e-54 185
MS.gene063262.t1 MTR_1g023810 45.249 221 111 7 138 354 47 261 4.85e-52 177
MS.gene063262.t1 MTR_2g066980 32.861 353 183 12 19 355 3 317 1.44e-50 175
MS.gene063262.t1 MTR_7g078630 37.162 296 134 8 28 311 690 945 1.69e-47 176
MS.gene063262.t1 MTR_4g072790 35.714 294 146 8 50 336 48 305 9.23e-46 162
MS.gene063262.t1 MTR_2g016380 40.553 217 117 4 240 446 18 232 2.58e-45 159
MS.gene063262.t1 MTR_4g072340 32.551 341 179 10 7 336 9 309 6.55e-44 157
MS.gene063262.t1 MTR_4g073660 34.459 296 151 7 50 336 47 308 1.56e-43 156
MS.gene063262.t1 MTR_1g025450 43.103 174 77 5 138 308 53 207 1.06e-32 130
MS.gene063262.t1 MTR_7g078580 50.476 105 49 3 258 361 4 106 6.47e-29 110
MS.gene063262.t1 MTR_2g015840 39.259 135 78 2 42 175 25 156 1.63e-27 111
MS.gene063262.t1 MTR_2g015840 44.954 109 57 3 248 355 164 270 1.36e-24 103
MS.gene063262.t1 MTR_7g079130 50.538 93 44 2 265 356 6 97 1.02e-24 98.2
MS.gene063262.t1 MTR_3g029560 33.962 212 111 8 151 356 49 237 2.67e-21 93.2
MS.gene063262.t1 MTR_7g078310 47.917 96 47 2 140 232 152 247 1.30e-20 91.7
MS.gene063262.t1 MTR_7g111060 27.758 281 158 12 97 348 66 330 7.07e-20 91.3
MS.gene063262.t1 MTR_2g047960 48.101 79 41 0 149 227 7 85 1.84e-18 80.9
MS.gene063262.t1 MTR_7g111050 26.715 277 166 11 97 348 63 327 5.09e-17 82.8
MS.gene063262.t1 MTR_8g087510 33.588 131 79 7 181 308 23 148 4.23e-12 65.1
MS.gene063262.t1 MTR_7g079260 42.466 73 24 2 282 353 7 62 7.43e-11 59.7
MS.gene063262.t1 MTR_1g009480 27.451 102 66 1 5 106 1 94 7.88e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063262.t1 AT1G47128 71.739 460 120 4 8 464 8 460 0.0 656
MS.gene063262.t1 AT5G43060 71.429 455 119 5 9 459 9 456 0.0 640
MS.gene063262.t1 AT3G19390 59.465 449 161 8 9 454 8 438 0.0 530
MS.gene063262.t1 AT4G36880 62.195 328 118 2 41 362 40 367 6.71e-151 434
MS.gene063262.t1 AT1G09850 51.551 419 179 7 44 455 26 427 8.81e-145 421
MS.gene063262.t1 AT3G19400 59.133 323 122 6 40 358 34 350 2.22e-136 397
MS.gene063262.t1 AT4G23520 55.028 358 142 8 5 358 9 351 1.54e-135 395
MS.gene063262.t1 AT4G11310 51.524 361 165 6 1 358 1 354 7.38e-127 373
MS.gene063262.t1 AT4G11320 51.801 361 164 6 3 358 6 361 1.40e-125 370
MS.gene063262.t1 AT4G11320 51.801 361 164 6 3 358 6 361 1.40e-125 370
MS.gene063262.t1 AT3G48340 51.831 355 164 5 12 365 4 352 2.81e-124 366
MS.gene063262.t1 AT1G20850 54.167 336 142 5 23 357 30 354 2.09e-122 361
MS.gene063262.t1 AT4G35350 50.142 351 164 3 7 357 14 353 4.24e-121 358
MS.gene063262.t1 AT5G50260 55.346 318 136 5 49 364 37 350 2.42e-118 351
MS.gene063262.t1 AT1G06260 47.714 350 164 6 11 357 10 343 4.54e-109 327
MS.gene063262.t1 AT3G48350 47.790 362 172 7 5 362 1 349 3.25e-108 325
MS.gene063262.t1 AT5G45890 45.042 353 173 6 7 355 9 344 5.13e-105 317
MS.gene063262.t1 AT3G43960 51.327 339 150 11 37 368 28 358 1.74e-102 311
MS.gene063262.t1 AT3G19400 58.964 251 94 5 40 286 34 279 8.09e-101 303
MS.gene063262.t1 AT2G34080 42.033 364 183 9 1 356 1 344 8.91e-91 280
MS.gene063262.t1 AT2G27420 42.936 361 183 10 5 356 1 347 2.22e-90 279
MS.gene063262.t1 AT3G49340 46.815 314 152 9 50 356 35 340 4.27e-90 278
MS.gene063262.t1 AT4G35350 47.535 284 138 3 7 290 14 286 1.16e-88 272
MS.gene063262.t1 AT1G29080 41.905 315 175 7 46 356 35 345 1.86e-81 256
MS.gene063262.t1 AT1G29090 40.000 365 179 11 9 356 13 354 3.29e-81 256
MS.gene063262.t1 AT3G48350 44.097 288 148 5 5 290 1 277 1.99e-73 233
MS.gene063262.t1 AT1G29110 35.673 342 202 6 19 356 6 333 1.33e-69 225
MS.gene063262.t1 AT5G60360 38.000 350 180 12 27 356 24 356 1.77e-65 215
MS.gene063262.t1 AT3G45310 36.000 375 202 12 1 356 1 356 1.82e-64 212
MS.gene063262.t1 AT4G39090 39.748 317 148 7 42 334 46 343 7.77e-64 211
MS.gene063262.t1 AT5G60360 37.429 350 181 12 27 356 24 355 3.53e-63 209
MS.gene063262.t1 AT5G60360 37.681 345 184 12 27 352 24 356 1.04e-62 208
MS.gene063262.t1 AT2G21430 36.212 359 185 10 1 334 1 340 1.17e-62 207
MS.gene063262.t1 AT3G45310 35.544 377 200 13 1 356 1 355 7.17e-62 206
MS.gene063262.t1 AT4G16190 35.574 357 195 11 6 336 3 350 3.71e-57 194
MS.gene063262.t1 AT3G54940 33.053 357 196 10 6 336 8 347 2.38e-51 178
MS.gene063262.t1 AT3G54940 32.042 284 161 7 6 272 8 276 7.44e-39 142
MS.gene063262.t1 AT4G01610 27.491 291 172 12 97 361 66 343 1.84e-20 93.2
MS.gene063262.t1 AT1G02305 27.698 278 162 11 97 348 69 333 7.37e-20 91.3
MS.gene063262.t1 AT4G01610 26.804 291 174 12 97 361 66 343 1.18e-18 87.8
MS.gene063262.t1 AT1G02300 28.095 210 122 8 161 348 148 350 4.49e-13 70.9

Find 129 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAAATGGGAAAGATTAT+TGG 0.227075 1.3:-4524532 MS.gene063262:CDS
GAACCGTAGGATGAAGAAAT+TGG 0.244550 1.3:-4527080 MS.gene063262:CDS
TATGTTCATCAATGAATTTA+AGG 0.255434 1.3:+4527200 None:intergenic
GTTGGATACGGTACAGAAAA+TGG 0.255932 1.3:-4524545 MS.gene063262:CDS
GGTGGTGATGGTCCAGGGTT+AGG 0.264790 1.3:+4524371 None:intergenic
GGGTTCTGTCCATTCTTAAT+TGG 0.270191 1.3:+4524395 None:intergenic
TTCCTCCAATCAACAGATTC+AGG 0.289567 1.3:+4527010 None:intergenic
GCCAAGCCTCACTGGGCCTT+TGG 0.294833 1.3:-4522933 MS.gene063262:CDS
TGTTGCTGTATTTACGAGTA+TGG 0.314590 1.3:-4524287 MS.gene063262:CDS
TTTCTCACCTAAACCGTTGT+AGG 0.323971 1.3:+4527252 None:intergenic
AACTTACATATTCATATAAC+TGG 0.326706 1.3:+4524902 None:intergenic
AGGATGCAATGGTGGACTTA+TGG 0.331252 1.3:-4525281 MS.gene063262:CDS
TGAATTCGACATATAGATTA+GGG 0.336748 1.3:-4527171 MS.gene063262:CDS
GTGGTGATGGTCCAGGGTTA+GGG 0.341154 1.3:+4524372 None:intergenic
GGAAAATCCTACAACGGTTT+AGG 0.345309 1.3:-4527259 MS.gene063262:CDS
ATGGTAGATGTGACCAGAAC+AGG 0.354867 1.3:-4525186 MS.gene063262:CDS
GAAATTCATGGGGTGGTAGC+TGG 0.356281 1.3:-4524502 MS.gene063262:CDS
TTGAATTCGACATATAGATT+AGG 0.369544 1.3:-4527172 MS.gene063262:CDS
CGTTAGTTAGATCCGCGAAC+CGG 0.375000 1.3:+4527143 None:intergenic
CAGACAGATGGTGGCTTGAT+AGG 0.385214 1.3:+4524344 None:intergenic
GCACTCCTGCCAAGCCTCAC+TGG 0.389486 1.3:-4522941 MS.gene063262:CDS
TGTTCCTGCTTATGATGAAT+TGG 0.389594 1.3:-4524989 MS.gene063262:CDS
TCTTGTCAGGGTGTATTTAC+CGG 0.390275 1.3:-4524605 MS.gene063262:intron
CCTATCGCCGTTGCTGTTGA+AGG 0.401421 1.3:-4524940 MS.gene063262:CDS
ATTGGATTGTGAGAAATTCA+TGG 0.410060 1.3:-4524514 MS.gene063262:CDS
CCAAGTAACTAACCCTGTTC+TGG 0.415431 1.3:+4525173 None:intergenic
TACCCTTACAAGGCTATTGA+TGG 0.421160 1.3:-4525205 MS.gene063262:CDS
CTACCATCAATAGCCTTGTA+AGG 0.422671 1.3:+4525202 None:intergenic
AATTGCCTGAATCTGTTGAT+TGG 0.426885 1.3:-4527015 MS.gene063262:CDS
AAGGCCCAGTGAGGCTTGGC+AGG 0.429824 1.3:+4522936 None:intergenic
CACTCCTGCCAAGCCTCACT+GGG 0.436398 1.3:-4522940 MS.gene063262:CDS
CCATTCTTAATTGGATAAGA+TGG 0.437304 1.3:+4524404 None:intergenic
AAATTCATGGGGTGGTAGCT+GGG 0.440858 1.3:-4524501 MS.gene063262:CDS
TCAGCAATCGCAGCTGTTGA+AGG 0.443055 1.3:-4525382 MS.gene063262:CDS
TTTCAATGAAGGGAGTTGTT+GGG 0.446061 1.3:-4525410 MS.gene063262:intron
GGTGATGGTCCAGGGTTAGG+GGG 0.448618 1.3:+4524374 None:intergenic
TGGTGATGGTCCAGGGTTAG+GGG 0.449337 1.3:+4524373 None:intergenic
AAGCCTCACTGGGCCTTTGG+TGG 0.453398 1.3:-4522930 MS.gene063262:CDS
GTGATGGTCCAGGGTTAGGG+GGG 0.453507 1.3:+4524375 None:intergenic
CATAGTCAACACTTCTTCGT+TGG 0.459007 1.3:+4527306 None:intergenic
AGGAAGGAAGGTGCTGTTGT+TGG 0.459612 1.3:-4526992 MS.gene063262:CDS
TCGTGCTGGACTTTGTCTTA+AGG 0.462543 1.3:-4524165 MS.gene063262:intron
TTCACTATCAGAACAAGAAC+TGG 0.467996 1.3:-4525329 MS.gene063262:CDS
AATTTCTTCATCCTACGGTT+CGG 0.472057 1.3:+4527082 None:intergenic
GGTGAAGGTGGTGATGGTCC+AGG 0.475487 1.3:+4524365 None:intergenic
TGATGAATTGGCCTTGCAAA+AGG 0.476220 1.3:-4524977 MS.gene063262:CDS
GGAATAAATAAGATTGTGAC+AGG 0.481755 1.3:-4525361 MS.gene063262:CDS
AGGAGATGATCGACATGTCT+AGG 0.481788 1.3:+4527368 None:intergenic
TGAAGAAATTGGGTGGTGTA+AGG 0.482021 1.3:-4527069 MS.gene063262:CDS
CACCCAATTTCTTCATCCTA+CGG 0.483167 1.3:+4527077 None:intergenic
TTGAATGACTTCACTCCCAA+TGG 0.485328 1.3:+4522966 None:intergenic
AGTGCTTACCACAACTTGCT+TGG 0.487527 1.3:+4526960 None:intergenic
GCTTGTTGATTTGTCTGGGT+GGG 0.490913 1.3:+4527336 None:intergenic
CAACAGCAACGGCGATAGGC+TGG 0.494154 1.3:+4524944 None:intergenic
ATTAGGGTTGACCCGGTTCG+CGG 0.494343 1.3:-4527155 MS.gene063262:CDS
CCTTCAACAGCAACGGCGAT+AGG 0.495351 1.3:+4524940 None:intergenic
ACCAAAGGCCCAGTGAGGCT+TGG 0.495376 1.3:+4522932 None:intergenic
AACCGTAGGATGAAGAAATT+GGG 0.496972 1.3:-4527079 MS.gene063262:CDS
TTGGATACGGTACAGAAAAT+GGG 0.502646 1.3:-4524544 MS.gene063262:CDS
CCTGTCTGTGACACTCGTGC+TGG 0.506173 1.3:-4524179 MS.gene063262:CDS
TGGAAGATCTTGCTTTGAGT+GGG 0.510888 1.3:-4524267 MS.gene063262:CDS
CCATCTTATCCAATTAAGAA+TGG 0.514473 1.3:-4524404 MS.gene063262:CDS
TGAATGACTTCACTCCCAAT+GGG 0.526918 1.3:+4522967 None:intergenic
TGCTTGTTGATTTGTCTGGG+TGG 0.529438 1.3:+4527335 None:intergenic
AAATTCATTGATGAACATAA+CGG 0.530458 1.3:-4527196 MS.gene063262:CDS
TCAAGCAGAGCAGGAAAGTG+TGG 0.532736 1.3:-4524440 MS.gene063262:CDS
GGCTAGTGAAACTGTGAAAG+TGG 0.534429 1.3:+4527390 None:intergenic
GTTAGTTAGATCCGCGAACC+GGG 0.534519 1.3:+4527144 None:intergenic
AGCTACTACAGCTGTGCTGA+AGG 0.535391 1.3:-4524317 MS.gene063262:CDS
TTTGAGTTCATCATCAGTAA+TGG 0.537702 1.3:-4525250 MS.gene063262:CDS
AATCTAGCTTCAAGCAGAGC+AGG 0.546872 1.3:-4524449 MS.gene063262:CDS
TTGGATTGTGAGAAATTCAT+GGG 0.548066 1.3:-4524513 MS.gene063262:CDS
GACCATGGTGTTGCAGCTGT+TGG 0.548818 1.3:-4524563 MS.gene063262:CDS
TGCCTGAATCTGTTGATTGG+AGG 0.549740 1.3:-4527012 MS.gene063262:CDS
TGCTGTTGAAGGAGGCGGTA+GGG 0.550318 1.3:-4524929 MS.gene063262:CDS
CAGGGCAAGAATAACCCATT+GGG 0.551019 1.3:-4522981 MS.gene063262:CDS
CATCTTGTTCTTACCACCAA+AGG 0.551674 1.3:+4522917 None:intergenic
GGTGGTAGCTGGGGTGAACA+AGG 0.554597 1.3:-4524491 MS.gene063262:CDS
TTGATAGGTGAAGGTGGTGA+TGG 0.555756 1.3:+4524359 None:intergenic
GCCGTTGCTGTTGAAGGAGG+CGG 0.557434 1.3:-4524934 MS.gene063262:CDS
GGTGTTGCAGCTGTTGGATA+CGG 0.561703 1.3:-4524557 MS.gene063262:CDS
CATATAGATTAGGGTTGACC+CGG 0.561757 1.3:-4527162 MS.gene063262:CDS
ATGGAAGATCTTGCTTTGAG+TGG 0.563923 1.3:-4524268 MS.gene063262:CDS
TAGTGCCGTTCCACATCTAC+CGG 0.569067 1.3:+4524586 None:intergenic
CCAGCACGAGTGTCACAGAC+AGG 0.571924 1.3:+4524179 None:intergenic
TGAAGAGGATTACCCTTACA+AGG 0.572769 1.3:-4525215 MS.gene063262:CDS
AATTCATGGGGTGGTAGCTG+GGG 0.574383 1.3:-4524500 MS.gene063262:CDS
GGAGATGATCGACATGTCTA+GGG 0.575045 1.3:+4527369 None:intergenic
ACAGGGCAAGAATAACCCAT+TGG 0.575173 1.3:-4522982 MS.gene063262:intron
AATCGTTATGCGCCACGTGT+CGG 0.576425 1.3:-4527043 MS.gene063262:CDS
GTTTAGGTGAGAAAGACAAA+AGG 0.579754 1.3:-4527243 MS.gene063262:CDS
GTCAAAGACCAAGCAAGTTG+TGG 0.584862 1.3:-4526968 MS.gene063262:intron
AAGGCCAATTCATCATAAGC+AGG 0.585009 1.3:+4524985 None:intergenic
GGTGTATTTACCGGTAGATG+TGG 0.590389 1.3:-4524596 MS.gene063262:CDS
TACCATCAATAGCCTTGTAA+GGG 0.599159 1.3:+4525203 None:intergenic
GAGTTCATCATCAGTAATGG+TGG 0.599792 1.3:-4525247 MS.gene063262:CDS
ACTATCAGAACAAGAACTGG+TGG 0.602270 1.3:-4525326 MS.gene063262:CDS
GTGAAGGTGGTGATGGTCCA+GGG 0.603987 1.3:+4524366 None:intergenic
ATCGCCGTTGCTGTTGAAGG+AGG 0.609464 1.3:-4524937 MS.gene063262:CDS
TTGCTGTTGAAGGAGGCGGT+AGG 0.609931 1.3:-4524930 MS.gene063262:CDS
GAAGAGTGGTTAGTGAAACA+TGG 0.615801 1.3:-4527280 MS.gene063262:CDS
CAAAGATCGATCCGAACCGT+AGG 0.618623 1.3:-4527093 MS.gene063262:CDS
CAGCAAGTAGCAGACTCAAG+AGG 0.620435 1.3:+4524236 None:intergenic
TAGTAGCTGTCACAGACAGA+TGG 0.620790 1.3:+4524332 None:intergenic
TGGTAGATGTGACCAGAACA+GGG 0.623188 1.3:-4525185 MS.gene063262:intron
TGGTGGCATTGACTCTGAAG+AGG 0.626193 1.3:-4525230 MS.gene063262:CDS
TCATACAACGAAGGATGCAA+TGG 0.627683 1.3:-4525292 MS.gene063262:CDS
TACAACGAAGGATGCAATGG+TGG 0.630463 1.3:-4525289 MS.gene063262:CDS
GGCAATTTATCACCGACACG+TGG 0.638153 1.3:+4527031 None:intergenic
TGTTGACTATGTACGAAGAG+TGG 0.640568 1.3:-4527294 MS.gene063262:CDS
TAGCTGTCACAGACAGATGG+TGG 0.645708 1.3:+4524335 None:intergenic
ATTACTGATGATGAACTCAA+AGG 0.646757 1.3:+4525252 None:intergenic
GGTGGCTTGATAGGTGAAGG+TGG 0.647988 1.3:+4524353 None:intergenic
ACCGCCTCCTTCAACAGCAA+CGG 0.651172 1.3:+4524933 None:intergenic
TCTGTTGATTGGAGGAAGGA+AGG 0.651628 1.3:-4527004 MS.gene063262:CDS
TGAATCTGTTGATTGGAGGA+AGG 0.656666 1.3:-4527008 MS.gene063262:CDS
CACAGACAGGATACTCATGA+GGG 0.662230 1.3:+4524192 None:intergenic
TCACAGACAGGATACTCATG+AGG 0.662392 1.3:+4524191 None:intergenic
ATTTACCGGTAGATGTGGAA+CGG 0.675984 1.3:-4524591 MS.gene063262:CDS
ATCCAACAGCTGCAACACCA+TGG 0.676166 1.3:+4524561 None:intergenic
TGTGGAACGGCACTAGACCA+TGG 0.678729 1.3:-4524578 MS.gene063262:CDS
CGTAGGATGAAGAAATTGGG+TGG 0.680087 1.3:-4527076 MS.gene063262:CDS
GATGGTGGCTTGATAGGTGA+AGG 0.689206 1.3:+4524350 None:intergenic
GGAAGATCTTGCTTTGAGTG+GGG 0.689687 1.3:-4524266 MS.gene063262:CDS
AAACATGGAAAATCCTACAA+CGG 0.700433 1.3:-4527265 MS.gene063262:CDS
ATTGTGAGAAATTCATGGGG+TGG 0.703535 1.3:-4524509 MS.gene063262:CDS
TGTGATACATCATACAACGA+AGG 0.706999 1.3:-4525301 MS.gene063262:CDS
TTACCACCAAAGGCCCAGTG+AGG 0.714697 1.3:+4522927 None:intergenic
TGGATTGTGAGAAATTCATG+GGG 0.737069 1.3:-4524512 MS.gene063262:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAATACAAAAAAAAAAA+AGG + chr1.3:4524254-4524273 None:intergenic 10.0%
!!! ACAAAATTTTAATTCATAAA+AGG - chr1.3:4523953-4523972 MS.gene063262:intron 10.0%
!!! CAAAATTTTAATTCATAAAA+GGG - chr1.3:4523954-4523973 MS.gene063262:intron 10.0%
!!! CCTATAAATTTTTTATAAAA+AGG - chr1.3:4526730-4526749 MS.gene063262:intron 10.0%
!!! CCTTTTTATAAAAAATTTAT+AGG + chr1.3:4526733-4526752 None:intergenic 10.0%
!! AAATTATCCTTATTAACTAT+TGG + chr1.3:4526944-4526963 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr1.3:4526943-4526962 MS.gene063262:intron 15.0%
!! GTCAAAAAAAATAAATTAAC+AGG + chr1.3:4525641-4525660 None:intergenic 15.0%
!! TTAAACTAAAAACAATTCTT+TGG - chr1.3:4524207-4524226 MS.gene063262:CDS 15.0%
!!! AACAAAAAAGCATTATATTA+TGG + chr1.3:4524721-4524740 None:intergenic 15.0%
!!! ATAATATTAGCAATTTTTTG+TGG + chr1.3:4524897-4524916 None:intergenic 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + chr1.3:4526817-4526836 None:intergenic 15.0%
!!! GTATGATTTAAAATTTTGTA+AGG + chr1.3:4524088-4524107 None:intergenic 15.0%
!!! TCTTAATTTAGTTGTTTTAT+CGG - chr1.3:4527266-4527285 MS.gene063262:CDS 15.0%
!!! TTAGATTTTTCTTATTTTCT+TGG - chr1.3:4523763-4523782 MS.gene063262:intron 15.0%
!! AAACAAAGTCAAATTCTTAT+GGG - chr1.3:4527222-4527241 MS.gene063262:CDS 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr1.3:4526934-4526953 MS.gene063262:intron 20.0%
!! AAATTCATTGATGAACATAA+CGG - chr1.3:4523139-4523158 MS.gene063262:intron 20.0%
!! AACTTACATATTCATATAAC+TGG + chr1.3:4525436-4525455 None:intergenic 20.0%
!! ACAATACACCAAAAAATTAT+GGG + chr1.3:4524027-4524046 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr1.3:4526857-4526876 None:intergenic 20.0%
!! ATTAATTCTACTATGAAACT+AGG - chr1.3:4525461-4525480 MS.gene063262:intron 20.0%
!! TACAATACACCAAAAAATTA+TGG + chr1.3:4524028-4524047 None:intergenic 20.0%
!! TATGTTCATCAATGAATTTA+AGG + chr1.3:4523138-4523157 None:intergenic 20.0%
!! TATTCAAAATCAATATGTGA+AGG + chr1.3:4525559-4525578 None:intergenic 20.0%
!!! ATCTTCTTTTTTTCAATGAA+GGG - chr1.3:4524915-4524934 MS.gene063262:CDS 20.0%
!!! ATTTTCTTGGATATGTTATT+AGG - chr1.3:4523776-4523795 MS.gene063262:intron 20.0%
!!! CTTAATTTAGTTGTTTTATC+GGG - chr1.3:4527267-4527286 MS.gene063262:CDS 20.0%
!!! TAATGATGTACTTTAATTTG+TGG - chr1.3:4523683-4523702 MS.gene063262:intron 20.0%
!!! TAGTTTTAAAAGTAGTACTT+TGG + chr1.3:4526920-4526939 None:intergenic 20.0%
!!! TATATTTCGTATGACTTTTA+AGG + chr1.3:4524495-4524514 None:intergenic 20.0%
!!! TATCTTCTTTTTTTCAATGA+AGG - chr1.3:4524914-4524933 MS.gene063262:CDS 20.0%
!!! TCCAAGTAATGTTTTAAAAA+TGG + chr1.3:4526425-4526444 None:intergenic 20.0%
!!! TCCATTTTTAAAACATTACT+TGG - chr1.3:4526421-4526440 MS.gene063262:intron 20.0%
! AATCAAACTCAGTTAATCAT+GGG + chr1.3:4524819-4524838 None:intergenic 25.0%
! ACGAATAATAGACATGTTAT+AGG + chr1.3:4527125-4527144 None:intergenic 25.0%
! ATGACAATAGTAAATGTTTG+TGG - chr1.3:4525199-4525218 MS.gene063262:CDS 25.0%
! ATTGATATATTGAGTACTCT+TGG + chr1.3:4524669-4524688 None:intergenic 25.0%
! CAAACAAAGTCAAATTCTTA+TGG - chr1.3:4527221-4527240 MS.gene063262:CDS 25.0%
! CAATCATTGGTGTAATAATA+TGG - chr1.3:4524685-4524704 MS.gene063262:intron 25.0%
! CTTATAATATATCCATAAGC+TGG - chr1.3:4526674-4526693 MS.gene063262:intron 25.0%
! GTAAACAATCCATACAAATT+TGG + chr1.3:4527299-4527318 None:intergenic 25.0%
! GTACTCAATATATCAATCAT+TGG - chr1.3:4524672-4524691 MS.gene063262:intron 25.0%
! TAACACTCTAATTCTTTCAT+TGG - chr1.3:4525251-4525270 MS.gene063262:CDS 25.0%
! TAATCAAACTCAGTTAATCA+TGG + chr1.3:4524820-4524839 None:intergenic 25.0%
! TGAATTCGACATATAGATTA+GGG - chr1.3:4523164-4523183 MS.gene063262:intron 25.0%
! TGATCAAGCACATAAAAATT+TGG + chr1.3:4527334-4527353 None:intergenic 25.0%
! TGATTAACTGAGTTTGATTA+AGG - chr1.3:4524820-4524839 MS.gene063262:intron 25.0%
! TGCATTTGTTTGTTCAATAT+GGG - chr1.3:4524396-4524415 MS.gene063262:CDS 25.0%
! TTATTTAAACTGTTTGATCG+TGG + chr1.3:4526345-4526364 None:intergenic 25.0%
! TTGAATAAAAATCATCTGTC+TGG - chr1.3:4525572-4525591 MS.gene063262:intron 25.0%
! TTGAATTCGACATATAGATT+AGG - chr1.3:4523163-4523182 MS.gene063262:intron 25.0%
! TTGATATATTGAGTACTCTT+GGG + chr1.3:4524668-4524687 None:intergenic 25.0%
! TTGCATTTGTTTGTTCAATA+TGG - chr1.3:4524395-4524414 MS.gene063262:CDS 25.0%
!! AATTTTATACTGTGTTGCAT+TGG - chr1.3:4525484-4525503 MS.gene063262:intron 25.0%
!! ATTTTATACTGTGTTGCATT+GGG - chr1.3:4525485-4525504 MS.gene063262:intron 25.0%
!! CATAAGAATTTGACTTTGTT+TGG + chr1.3:4527223-4527242 None:intergenic 25.0%
!! TTAAGGAACATGATAGTTTT+TGG - chr1.3:4524837-4524856 MS.gene063262:intron 25.0%
!! TTTAAGGTAGACATGATTAA+AGG + chr1.3:4524479-4524498 None:intergenic 25.0%
!!! ATTTTAATGATCTGAGAGTT+AGG + chr1.3:4524132-4524151 None:intergenic 25.0%
!!! CTTTGTTTTGTAGTCATATA+AGG - chr1.3:4524286-4524305 MS.gene063262:CDS 25.0%
!!! TTCATTGGTTTTAAACTGTT+TGG - chr1.3:4525266-4525285 MS.gene063262:CDS 25.0%
!!! TTTTTGATTGGATTTTCACT+TGG - chr1.3:4526229-4526248 MS.gene063262:intron 25.0%
AAACATGGAAAATCCTACAA+CGG - chr1.3:4523070-4523089 MS.gene063262:intron 30.0%
ACGTAGATAATCATGTAACA+TGG - chr1.3:4524607-4524626 MS.gene063262:intron 30.0%
AGTAAAAGATAAGGTTGACT+TGG + chr1.3:4526201-4526220 None:intergenic 30.0%
ATACAATACACCAAGAAACT+GGG + chr1.3:4524061-4524080 None:intergenic 30.0%
ATCAAACTCAGTTAATCATG+GGG + chr1.3:4524818-4524837 None:intergenic 30.0%
ATCCATGTGTAACAATATCT+GGG - chr1.3:4523643-4523662 MS.gene063262:intron 30.0%
ATGAAATCCCAAAGCAAATA+AGG + chr1.3:4523882-4523901 None:intergenic 30.0%
ATGCAAGCAAGTAAAAGATA+AGG + chr1.3:4526210-4526229 None:intergenic 30.0%
ATTGGATTGTGAGAAATTCA+TGG - chr1.3:4525821-4525840 MS.gene063262:intron 30.0%
CAGAAAATGGGAAAGATTAT+TGG - chr1.3:4525803-4525822 MS.gene063262:intron 30.0%
CATTACTTGGAACTAATTGT+TGG - chr1.3:4526434-4526453 MS.gene063262:intron 30.0%
CCAATTTGAGCTGTTTAAAA+CGG + chr1.3:4526315-4526334 None:intergenic 30.0%
CCATCTTATCCAATTAAGAA+TGG - chr1.3:4525931-4525950 MS.gene063262:intron 30.0%
CCATGTTATGATTGATTGAT+AGG + chr1.3:4524443-4524462 None:intergenic 30.0%
CCATTCTTAATTGGATAAGA+TGG + chr1.3:4525934-4525953 None:intergenic 30.0%
CCTATCAATCAATCATAACA+TGG - chr1.3:4524440-4524459 MS.gene063262:CDS 30.0%
GCAAATCAAAATCAATCGTA+TGG + chr1.3:4524179-4524198 None:intergenic 30.0%
GGAATAAATAAGATTGTGAC+AGG - chr1.3:4524974-4524993 MS.gene063262:CDS 30.0%
GGGAATTATCCAAATTTGTA+TGG - chr1.3:4527287-4527306 MS.gene063262:CDS 30.0%
TACTTCTGCTCAAGAAATAA+AGG + chr1.3:4524764-4524783 None:intergenic 30.0%
TTGGATTGTGAGAAATTCAT+GGG - chr1.3:4525822-4525841 MS.gene063262:intron 30.0%
! AGAGTATAGAAGCAAGTTTT+TGG - chr1.3:4523216-4523235 MS.gene063262:intron 30.0%
! ATTACTGATGATGAACTCAA+AGG + chr1.3:4525086-4525105 None:intergenic 30.0%
! ATTTTTATGTGCTTGATCAC+AGG - chr1.3:4527335-4527354 MS.gene063262:CDS 30.0%
! GAGTATAGAAGCAAGTTTTT+GGG - chr1.3:4523217-4523236 MS.gene063262:intron 30.0%
! TACTTGCTTGCATTTTTGAT+TGG - chr1.3:4526217-4526236 MS.gene063262:intron 30.0%
! TGGATTTCCTTATTTGCTTT+GGG - chr1.3:4523872-4523891 MS.gene063262:intron 30.0%
! TTTGAGTTCATCATCAGTAA+TGG - chr1.3:4525085-4525104 MS.gene063262:intron 30.0%
! TTTTTATGTGCTTGATCACA+GGG - chr1.3:4527336-4527355 MS.gene063262:CDS 30.0%
!! CTAATTGTTGGCTACTATTT+TGG - chr1.3:4526446-4526465 MS.gene063262:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr1.3:4527025-4527044 None:intergenic 30.0%
!!! TTTTGCTTGTTGATTTGTCT+GGG + chr1.3:4523006-4523025 None:intergenic 30.0%
AAACGTAAAGACTTCAGTCA+TGG - chr1.3:4526284-4526303 MS.gene063262:intron 35.0%
AAAGTCCAAATGAACGCAAA+AGG + chr1.3:4526494-4526513 None:intergenic 35.0%
AACCGTAGGATGAAGAAATT+GGG - chr1.3:4523256-4523275 MS.gene063262:intron 35.0%
AAGTCCAAATGAACGCAAAA+GGG + chr1.3:4526493-4526512 None:intergenic 35.0%
AATTGCCTGAATCTGTTGAT+TGG - chr1.3:4523320-4523339 MS.gene063262:intron 35.0%
AATTTCTTCATCCTACGGTT+CGG + chr1.3:4523256-4523275 None:intergenic 35.0%
AGTCTTTACGTTTCAATGTC+CGG + chr1.3:4526277-4526296 None:intergenic 35.0%
ATTCCATTTGTCTCTTGTCA+GGG - chr1.3:4525718-4525737 MS.gene063262:intron 35.0%
CAAATGCAAACCAAGAATTC+TGG + chr1.3:4524384-4524403 None:intergenic 35.0%
CAATGAACAGACACTATCTA+CGG + chr1.3:4526373-4526392 None:intergenic 35.0%
CAGATATTGTTACACATGGA+TGG + chr1.3:4523644-4523663 None:intergenic 35.0%
CATACAATACACCAAGAAAC+TGG + chr1.3:4524062-4524081 None:intergenic 35.0%
CATCCATGTGTAACAATATC+TGG - chr1.3:4523642-4523661 MS.gene063262:intron 35.0%
CCTAAAATCACCAGAATTCT+TGG - chr1.3:4524371-4524390 MS.gene063262:CDS 35.0%
CTTGATCCTGATAATTCATC+TGG - chr1.3:4523852-4523871 MS.gene063262:intron 35.0%
GGAAATCCAGATGAATTATC+AGG + chr1.3:4523861-4523880 None:intergenic 35.0%
GGCTATTGAAGATAATGTGA+AGG + chr1.3:4525620-4525639 None:intergenic 35.0%
GTAGTCATATAAGGTCTGTT+TGG - chr1.3:4524295-4524314 MS.gene063262:CDS 35.0%
GTGGAAGATAGTTAATCAGT+AGG - chr1.3:4525218-4525237 MS.gene063262:CDS 35.0%
GTTTAGGTGAGAAAGACAAA+AGG - chr1.3:4523092-4523111 MS.gene063262:intron 35.0%
TATTCCATTTGTCTCTTGTC+AGG - chr1.3:4525717-4525736 MS.gene063262:intron 35.0%
TGGATTGTGAGAAATTCATG+GGG - chr1.3:4525823-4525842 MS.gene063262:intron 35.0%
TGTGATACATCATACAACGA+AGG - chr1.3:4525034-4525053 MS.gene063262:intron 35.0%
TGTTCCTGCTTATGATGAAT+TGG - chr1.3:4525346-4525365 MS.gene063262:CDS 35.0%
TGTTGCTGTATTTACGAGTA+TGG - chr1.3:4526048-4526067 MS.gene063262:intron 35.0%
TTAATGATCTGAGAGTTAGG+AGG + chr1.3:4524129-4524148 None:intergenic 35.0%
TTCACTATCAGAACAAGAAC+TGG - chr1.3:4525006-4525025 MS.gene063262:CDS 35.0%
TTCCCAGATATTGTTACACA+TGG + chr1.3:4523648-4523667 None:intergenic 35.0%
TTGACTTTGCTTCACAAGAT+TGG - chr1.3:4525656-4525675 MS.gene063262:intron 35.0%
TTGGATACGGTACAGAAAAT+GGG - chr1.3:4525791-4525810 MS.gene063262:intron 35.0%
TTTATCTGCTGAGACTGTTT+GGG - chr1.3:4527082-4527101 MS.gene063262:CDS 35.0%
TTTCAATGAAGGGAGTTGTT+GGG - chr1.3:4524925-4524944 MS.gene063262:CDS 35.0%
TTTGGATTTCGTTTGCAGTA+TGG - chr1.3:4524225-4524244 MS.gene063262:CDS 35.0%
! CCAAGAATTCTGGTGATTTT+AGG + chr1.3:4524374-4524393 None:intergenic 35.0%
! CCTTAAAAGTTTTACGACGA+CGG - chr1.3:4524536-4524555 MS.gene063262:CDS 35.0%
! CTGGATTTCCTTATTTGCTT+TGG - chr1.3:4523871-4523890 MS.gene063262:intron 35.0%
! GATAATCTGAAACCAGCTTA+TGG + chr1.3:4526689-4526708 None:intergenic 35.0%
! GTTTCTTGGTGTATTGTATG+TGG - chr1.3:4524062-4524081 MS.gene063262:intron 35.0%
! TTTTCAATGAAGGGAGTTGT+TGG - chr1.3:4524924-4524943 MS.gene063262:CDS 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr1.3:4526791-4526810 None:intergenic 35.0%
!! CAATGCTTTAAAAGCCAAAC+CGG - chr1.3:4526255-4526274 MS.gene063262:intron 35.0%
!! CCGTTTTAAACAGCTCAAAT+TGG - chr1.3:4526312-4526331 MS.gene063262:intron 35.0%
!! TACCATCAATAGCCTTGTAA+GGG + chr1.3:4525135-4525154 None:intergenic 35.0%
!!! CTTTTGCTTGTTGATTTGTC+TGG + chr1.3:4523007-4523026 None:intergenic 35.0%
!!! GACACTCATTTTGAAACAGA+GGG - chr1.3:4527030-4527049 MS.gene063262:CDS 35.0%
AAAAATTATGGGACCCTTCC+CGG + chr1.3:4524016-4524035 None:intergenic 40.0%
AAAATCATCTGTCTGGCAAG+TGG - chr1.3:4525579-4525598 MS.gene063262:intron 40.0%
AACAGACACTATCTACGGTT+CGG + chr1.3:4526368-4526387 None:intergenic 40.0%
AAGGCCAATTCATCATAAGC+AGG + chr1.3:4525353-4525372 None:intergenic 40.0%
ACTATCAGAACAAGAACTGG+TGG - chr1.3:4525009-4525028 MS.gene063262:CDS 40.0%
ATTGTGAGAAATTCATGGGG+TGG - chr1.3:4525826-4525845 MS.gene063262:intron 40.0%
ATTTACCGGTAGATGTGGAA+CGG - chr1.3:4525744-4525763 MS.gene063262:intron 40.0%
CACCCAATTTCTTCATCCTA+CGG + chr1.3:4523261-4523280 None:intergenic 40.0%
CATAGTCAACACTTCTTCGT+TGG + chr1.3:4523032-4523051 None:intergenic 40.0%
CATATAGATTAGGGTTGACC+CGG - chr1.3:4523173-4523192 MS.gene063262:intron 40.0%
CATCTTGTTCTTACCACCAA+AGG + chr1.3:4527421-4527440 None:intergenic 40.0%
GAACCGTAGGATGAAGAAAT+TGG - chr1.3:4523255-4523274 MS.gene063262:intron 40.0%
GAAGAGTGGTTAGTGAAACA+TGG - chr1.3:4523055-4523074 MS.gene063262:intron 40.0%
GAGTTCATCATCAGTAATGG+TGG - chr1.3:4525088-4525107 MS.gene063262:intron 40.0%
GGAAAATCCTACAACGGTTT+AGG - chr1.3:4523076-4523095 MS.gene063262:intron 40.0%
GGGTTCTGTCCATTCTTAAT+TGG + chr1.3:4525943-4525962 None:intergenic 40.0%
GTTGGATACGGTACAGAAAA+TGG - chr1.3:4525790-4525809 MS.gene063262:intron 40.0%
GTTTATCTGCTGAGACTGTT+TGG - chr1.3:4527081-4527100 MS.gene063262:CDS 40.0%
TAAAACTCCCCGCATAAGTA+GGG - chr1.3:4523989-4524008 MS.gene063262:intron 40.0%
TACCCTTACAAGGCTATTGA+TGG - chr1.3:4525130-4525149 MS.gene063262:intron 40.0%
TCATACAACGAAGGATGCAA+TGG - chr1.3:4525043-4525062 MS.gene063262:intron 40.0%
TCTTGTCAGGGTGTATTTAC+CGG - chr1.3:4525730-4525749 MS.gene063262:intron 40.0%
TGAAGAAATTGGGTGGTGTA+AGG - chr1.3:4523266-4523285 MS.gene063262:intron 40.0%
TGAAGAGGATTACCCTTACA+AGG - chr1.3:4525120-4525139 MS.gene063262:intron 40.0%
TGAATGACTTCACTCCCAAT+GGG + chr1.3:4527371-4527390 None:intergenic 40.0%
TGTAAGATATCCATCAGCTG+TGG + chr1.3:4524351-4524370 None:intergenic 40.0%
TTACGTTTCAATGTCCGGTT+TGG + chr1.3:4526272-4526291 None:intergenic 40.0%
TTCCTCCAATCAACAGATTC+AGG + chr1.3:4523328-4523347 None:intergenic 40.0%
TTGAATGACTTCACTCCCAA+TGG + chr1.3:4527372-4527391 None:intergenic 40.0%
TTTCTCACCTAAACCGTTGT+AGG + chr1.3:4523086-4523105 None:intergenic 40.0%
! ATGGAAGATCTTGCTTTGAG+TGG - chr1.3:4526067-4526086 MS.gene063262:intron 40.0%
! ATGTCCCTTTTGCGTTCATT+TGG - chr1.3:4526486-4526505 MS.gene063262:intron 40.0%
! CCGTCGTCGTAAAACTTTTA+AGG + chr1.3:4524539-4524558 None:intergenic 40.0%
! TGAATCTGTTGATTGGAGGA+AGG - chr1.3:4523327-4523346 MS.gene063262:intron 40.0%
! TGGAAGATCTTGCTTTGAGT+GGG - chr1.3:4526068-4526087 MS.gene063262:intron 40.0%
! TGTTGACTATGTACGAAGAG+TGG - chr1.3:4523041-4523060 MS.gene063262:intron 40.0%
!! CTACCATCAATAGCCTTGTA+AGG + chr1.3:4525136-4525155 None:intergenic 40.0%
!! TGATGAATTGGCCTTGCAAA+AGG - chr1.3:4525358-4525377 MS.gene063262:CDS 40.0%
!!! CGACACTCATTTTGAAACAG+AGG - chr1.3:4527029-4527048 MS.gene063262:CDS 40.0%
!!! CGGTTTGGCTTTTAAAGCAT+TGG + chr1.3:4526257-4526276 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr1.3:4526787-4526806 None:intergenic 40.0%
!!! GGAAGGGTCCCATAATTTTT+TGG - chr1.3:4524016-4524035 MS.gene063262:intron 40.0%
AAATTCATGGGGTGGTAGCT+GGG - chr1.3:4525834-4525853 MS.gene063262:intron 45.0%
ACACCCTGACAAGAGACAAA+TGG + chr1.3:4525724-4525743 None:intergenic 45.0%
ACAGGGCAAGAATAACCCAT+TGG - chr1.3:4527353-4527372 MS.gene063262:CDS 45.0%
ACTGGTTGAACTGTCTTGTC+TGG - chr1.3:4526397-4526416 MS.gene063262:intron 45.0%
AGGAGATGATCGACATGTCT+AGG + chr1.3:4522970-4522989 None:intergenic 45.0%
AGTATCATCACCACAGCTGA+TGG - chr1.3:4524338-4524357 MS.gene063262:CDS 45.0%
ATGGTAGATGTGACCAGAAC+AGG - chr1.3:4525149-4525168 MS.gene063262:intron 45.0%
CACAGACAGGATACTCATGA+GGG + chr1.3:4526146-4526165 None:intergenic 45.0%
CAGGGCAAGAATAACCCATT+GGG - chr1.3:4527354-4527373 MS.gene063262:CDS 45.0%
CCAAGTAACTAACCCTGTTC+TGG + chr1.3:4525165-4525184 None:intergenic 45.0%
CGCAAAAGGGACATATCAAC+AGG + chr1.3:4526480-4526499 None:intergenic 45.0%
CGTAGGATGAAGAAATTGGG+TGG - chr1.3:4523259-4523278 MS.gene063262:intron 45.0%
CTAAAACTCCCCGCATAAGT+AGG - chr1.3:4523988-4524007 MS.gene063262:intron 45.0%
CTCAGTTAATCATGGGGTGA+AGG + chr1.3:4524812-4524831 None:intergenic 45.0%
GGAGATGATCGACATGTCTA+GGG + chr1.3:4522969-4522988 None:intergenic 45.0%
GGCTAGTGAAACTGTGAAAG+TGG + chr1.3:4522948-4522967 None:intergenic 45.0%
GGTGTATTTACCGGTAGATG+TGG - chr1.3:4525739-4525758 MS.gene063262:intron 45.0%
GTCAAAGACCAAGCAAGTTG+TGG - chr1.3:4523367-4523386 MS.gene063262:intron 45.0%
GTGTCTGTTCATTGCTCAAC+TGG - chr1.3:4526379-4526398 MS.gene063262:intron 45.0%
TACAACGAAGGATGCAATGG+TGG - chr1.3:4525046-4525065 MS.gene063262:intron 45.0%
TAGTAGCTGTCACAGACAGA+TGG + chr1.3:4526006-4526025 None:intergenic 45.0%
TCACAGACAGGATACTCATG+AGG + chr1.3:4526147-4526166 None:intergenic 45.0%
TCGTGCTGGACTTTGTCTTA+AGG - chr1.3:4526170-4526189 MS.gene063262:intron 45.0%
TGAGACTGTTTGGGAGAACA+TGG - chr1.3:4527091-4527110 MS.gene063262:CDS 45.0%
TGGTAGATGTGACCAGAACA+GGG - chr1.3:4525150-4525169 MS.gene063262:intron 45.0%
TTGATAGGTGAAGGTGGTGA+TGG + chr1.3:4525979-4525998 None:intergenic 45.0%
! AATCTAGCTTCAAGCAGAGC+AGG - chr1.3:4525886-4525905 MS.gene063262:intron 45.0%
! AGTGCTTACCACAACTTGCT+TGG + chr1.3:4523378-4523397 None:intergenic 45.0%
! GGAAGATCTTGCTTTGAGTG+GGG - chr1.3:4526069-4526088 MS.gene063262:intron 45.0%
! GTTTGCAACAGCCTTTTGCA+AGG + chr1.3:4525372-4525391 None:intergenic 45.0%
! TCTGTTGATTGGAGGAAGGA+AGG - chr1.3:4523331-4523350 MS.gene063262:intron 45.0%
! TGCCTGAATCTGTTGATTGG+AGG - chr1.3:4523323-4523342 MS.gene063262:intron 45.0%
!! AGGATGCAATGGTGGACTTA+TGG - chr1.3:4525054-4525073 MS.gene063262:intron 45.0%
!! CCAGAACAGGGTTAGTTACT+TGG - chr1.3:4525162-4525181 MS.gene063262:intron 45.0%
!! GCTTGTTGATTTGTCTGGGT+GGG + chr1.3:4523002-4523021 None:intergenic 45.0%
!! TGCTTGTTGATTTGTCTGGG+TGG + chr1.3:4523003-4523022 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr1.3:4526788-4526807 None:intergenic 45.0%
!!! TAATTTTAAAATTAAATACA+AGG - chr1.3:4523731-4523750 MS.gene063262:intron 5.0%
AATCGTTATGCGCCACGTGT+CGG - chr1.3:4523292-4523311 MS.gene063262:intron 50.0%
AATTCATGGGGTGGTAGCTG+GGG - chr1.3:4525835-4525854 MS.gene063262:intron 50.0%
AGCTACTACAGCTGTGCTGA+AGG - chr1.3:4526018-4526037 MS.gene063262:intron 50.0%
ATCCAACAGCTGCAACACCA+TGG + chr1.3:4525777-4525796 None:intergenic 50.0%
CAAAGATCGATCCGAACCGT+AGG - chr1.3:4523242-4523261 MS.gene063262:intron 50.0%
CAGCAAGTAGCAGACTCAAG+AGG + chr1.3:4526102-4526121 None:intergenic 50.0%
CGCAGTCTTACCCAGTTTCT+TGG - chr1.3:4524048-4524067 MS.gene063262:intron 50.0%
CGTTAGTTAGATCCGCGAAC+CGG + chr1.3:4523195-4523214 None:intergenic 50.0%
GAAATTCATGGGGTGGTAGC+TGG - chr1.3:4525833-4525852 MS.gene063262:intron 50.0%
GGCAATTTATCACCGACACG+TGG + chr1.3:4523307-4523326 None:intergenic 50.0%
GTTAGTTAGATCCGCGAACC+GGG + chr1.3:4523194-4523213 None:intergenic 50.0%
TAGCTGTCACAGACAGATGG+TGG + chr1.3:4526003-4526022 None:intergenic 50.0%
TCAAGCAGAGCAGGAAAGTG+TGG - chr1.3:4525895-4525914 MS.gene063262:intron 50.0%
TCAGCAATCGCAGCTGTTGA+AGG - chr1.3:4524953-4524972 MS.gene063262:CDS 50.0%
! CAGACAGATGGTGGCTTGAT+AGG + chr1.3:4525994-4526013 None:intergenic 50.0%
! GATGGTGGCTTGATAGGTGA+AGG + chr1.3:4525988-4526007 None:intergenic 50.0%
! GGTGTTGCAGCTGTTGGATA+CGG - chr1.3:4525778-4525797 MS.gene063262:intron 50.0%
! TAGTGCCGTTCCACATCTAC+CGG + chr1.3:4525752-4525771 None:intergenic 50.0%
!! AGGAAGGAAGGTGCTGTTGT+TGG - chr1.3:4523343-4523362 MS.gene063262:intron 50.0%
!! TGGTGGCATTGACTCTGAAG+AGG - chr1.3:4525105-4525124 MS.gene063262:intron 50.0%
ACCGCCTCCTTCAACAGCAA+CGG + chr1.3:4525405-4525424 None:intergenic 55.0%
CCTTCAACAGCAACGGCGAT+AGG + chr1.3:4525398-4525417 None:intergenic 55.0%
CTTCCCGGACCCTACTTATG+CGG + chr1.3:4524001-4524020 None:intergenic 55.0%
GCATAAGTAGGGTCCGGGAA+GGG - chr1.3:4524000-4524019 MS.gene063262:intron 55.0%
GGTGGCTTGATAGGTGAAGG+TGG + chr1.3:4525985-4526004 None:intergenic 55.0%
TGCTGTTGAAGGAGGCGGTA+GGG - chr1.3:4525406-4525425 MS.gene063262:intron 55.0%
TGTGGAACGGCACTAGACCA+TGG - chr1.3:4525757-4525776 MS.gene063262:intron 55.0%
TTACCACCAAAGGCCCAGTG+AGG + chr1.3:4527411-4527430 None:intergenic 55.0%
TTCCCGGACCCTACTTATGC+GGG + chr1.3:4524000-4524019 None:intergenic 55.0%
! ATCGCCGTTGCTGTTGAAGG+AGG - chr1.3:4525398-4525417 MS.gene063262:CDS 55.0%
! ATTAGGGTTGACCCGGTTCG+CGG - chr1.3:4523180-4523199 MS.gene063262:intron 55.0%
! CCTATCGCCGTTGCTGTTGA+AGG - chr1.3:4525395-4525414 MS.gene063262:CDS 55.0%
! TTGCTGTTGAAGGAGGCGGT+AGG - chr1.3:4525405-4525424 MS.gene063262:intron 55.0%
!! GACCATGGTGTTGCAGCTGT+TGG - chr1.3:4525772-4525791 MS.gene063262:intron 55.0%
!! GTCTGGGTGGGTTTTGTCGT+AGG + chr1.3:4522990-4523009 None:intergenic 55.0%
!! GTGAAGGTGGTGATGGTCCA+GGG + chr1.3:4525972-4525991 None:intergenic 55.0%
!! GTGGTGATGGTCCAGGGTTA+GGG + chr1.3:4525966-4525985 None:intergenic 55.0%
!! TGGTGATGGTCCAGGGTTAG+GGG + chr1.3:4525965-4525984 None:intergenic 55.0%
AAGCCTCACTGGGCCTTTGG+TGG - chr1.3:4527405-4527424 MS.gene063262:CDS 60.0%
ACCAAAGGCCCAGTGAGGCT+TGG + chr1.3:4527406-4527425 None:intergenic 60.0%
CAACAGCAACGGCGATAGGC+TGG + chr1.3:4525394-4525413 None:intergenic 60.0%
CACTCCTGCCAAGCCTCACT+GGG - chr1.3:4527395-4527414 MS.gene063262:CDS 60.0%
CCAGCACGAGTGTCACAGAC+AGG + chr1.3:4526159-4526178 None:intergenic 60.0%
CCTGTCTGTGACACTCGTGC+TGG - chr1.3:4526156-4526175 MS.gene063262:intron 60.0%
CGCATAAGTAGGGTCCGGGA+AGG - chr1.3:4523999-4524018 MS.gene063262:intron 60.0%
CTCCCCGCATAAGTAGGGTC+CGG - chr1.3:4523994-4524013 MS.gene063262:intron 60.0%
GGTGGTAGCTGGGGTGAACA+AGG - chr1.3:4525844-4525863 MS.gene063262:intron 60.0%
GTGATGGTCCAGGGTTAGGG+GGG + chr1.3:4525963-4525982 None:intergenic 60.0%
TCCCCGCATAAGTAGGGTCC+GGG - chr1.3:4523995-4524014 MS.gene063262:intron 60.0%
TCCCGGACCCTACTTATGCG+GGG + chr1.3:4523999-4524018 None:intergenic 60.0%
! GCCGTTGCTGTTGAAGGAGG+CGG - chr1.3:4525401-4525420 MS.gene063262:CDS 60.0%
! GGTGATGGTCCAGGGTTAGG+GGG + chr1.3:4525964-4525983 None:intergenic 60.0%
!! GGTGAAGGTGGTGATGGTCC+AGG + chr1.3:4525973-4525992 None:intergenic 60.0%
!! GGTGGTGATGGTCCAGGGTT+AGG + chr1.3:4525967-4525986 None:intergenic 60.0%
!! TGCGGGGAGTTTTAGTGCGC+AGG + chr1.3:4523983-4524002 None:intergenic 60.0%
AAGGCCCAGTGAGGCTTGGC+AGG + chr1.3:4527402-4527421 None:intergenic 65.0%
GCACTCCTGCCAAGCCTCAC+TGG - chr1.3:4527394-4527413 MS.gene063262:CDS 65.0%
GCCAAGCCTCACTGGGCCTT+TGG - chr1.3:4527402-4527421 MS.gene063262:CDS 65.0%
GGACAGAACCCCCCTAACCC+TGG - chr1.3:4525952-4525971 MS.gene063262:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 4522905 4527452 4522905 ID=MS.gene063262
chr1.3 mRNA 4522905 4527452 4522905 ID=MS.gene063262.t1;Parent=MS.gene063262
chr1.3 exon 4526969 4527452 4526969 ID=MS.gene063262.t1.exon1;Parent=MS.gene063262.t1
chr1.3 CDS 4526969 4527452 4526969 ID=cds.MS.gene063262.t1;Parent=MS.gene063262.t1
chr1.3 exon 4525186 4525421 4525186 ID=MS.gene063262.t1.exon2;Parent=MS.gene063262.t1
chr1.3 CDS 4525186 4525421 4525186 ID=cds.MS.gene063262.t1;Parent=MS.gene063262.t1
chr1.3 exon 4524909 4525049 4524909 ID=MS.gene063262.t1.exon3;Parent=MS.gene063262.t1
chr1.3 CDS 4524909 4525049 4524909 ID=cds.MS.gene063262.t1;Parent=MS.gene063262.t1
chr1.3 exon 4524166 4524618 4524166 ID=MS.gene063262.t1.exon4;Parent=MS.gene063262.t1
chr1.3 CDS 4524166 4524618 4524166 ID=cds.MS.gene063262.t1;Parent=MS.gene063262.t1
chr1.3 exon 4522905 4523000 4522905 ID=MS.gene063262.t1.exon5;Parent=MS.gene063262.t1
chr1.3 CDS 4522905 4523000 4522905 ID=cds.MS.gene063262.t1;Parent=MS.gene063262.t1
Gene Sequence

>MS.gene063262

ATGGATTCAGCGATGAAACTCATGATCGTTCTCATCTTAGCCACTTTCACAGTTTCACTAGCCCTAGACATGTCGATCATCTCCTACGACAAAACCCACCCAGACAAATCAACAAGCAAAAGAACCAACGAAGAAGTGTTGACTATGTACGAAGAGTGGTTAGTGAAACATGGAAAATCCTACAACGGTTTAGGTGAGAAAGACAAAAGGTTCGAGATCTTCAAAGACAACCTTAAATTCATTGATGAACATAACGGTTTGAATTCGACATATAGATTAGGGTTGACCCGGTTCGCGGATCTAACTAACGAAGAGTATAGAAGCAAGTTTTTGGGAACAAAGATCGATCCGAACCGTAGGATGAAGAAATTGGGTGGTGTAAGGAGCAATCGTTATGCGCCACGTGTCGGTGATAAATTGCCTGAATCTGTTGATTGGAGGAAGGAAGGTGCTGTTGTTGGAGTCAAAGACCAAGCAAGTTGTGGTAAGCACTTCGATCACTTATCTTAAACACTTTCGATGTTTTTTACTTTTTTTTTCTTTTTCTTTTAAATAAAAAATAAATAAAGCTAAATTCTTTTCTTTGTTTCTAATCATTCTTTGATTTTTTTCTCAAAAAAAAAAATCATTCTTTGATTTTAAATTAATAATTAATAATATCTACTGTCTGTTACTATTGACTTATTGTGAATATTATTTTGTTTTTAAATTTTATGATCTTATCTTTGATTTACTGCCATCCATGTGTAACAATATCTGGGAAAAAATATTTCAGTGTTAATGATGTACTTTAATTTGTGGCTGAAAAATATTGATTTTATTTATTTAATTTTAAAATTAAATACAAGGCTTTTAATTTTAGATTTTTCTTATTTTCTTGGATATGTTATTAGGATTTCATGATTCTTATTTGTGATCTGACTATGATATGAATCAAAGTATCAACTCTTGATCCTGATAATTCATCTGGATTTCCTTATTTGCTTTGGGATTTCATGTTTTATAGTGAAATTTACAAAAATAAATAAATAAATTGAAGAAGAAACTTACAAAATTTTAATTCATAAAAGGGCAACCTGCGCACTAAAACTCCCCGCATAAGTAGGGTCCGGGAAGGGTCCCATAATTTTTTGGTGTATTGTACGCAGTCTTACCCAGTTTCTTGGTGTATTGTATGTGGCCTTACAAAATTTTAAATCATACACACTGATAATCAATTGTCCTCCTAACTCTCAGATCATTAAAATTGTTTGACTTTAATTATACATAGACCATACGATTGATTTTGATTTGCTGATAGTGTTAAACTAAAAACAATTCTTTGGATTTCGTTTGCAGTATGGATTCCTTTTTTTTTTTTGTATTACTTAATACTTAAGTTCTTTGTTTTGTAGTCATATAAGGTCTGTTTGGAAAGTAAATACAGTATAAAGAGTATCATCACCACAGCTGATGGATATCTTACACCTAAAATCACCAGAATTCTTGGTTTGCATTTGTTTGTTCAATATGGGTTTAATTGATATGCACTTTTACCTATCAATCAATCATAACATGGCTCGAAATATACGCCTTTAATCATGTCTACCTTAAAAGTCATACGAAATATATATTTTGTGACTGTTTAACTACCTTAAAAGTTTTACGACGACGGTGCATCAAAATTAATCTCTTTGAATATTCTCAAAATTGTTAAGAGAACACGTAGATAATCATGTAACATGGTTTGTGCTTGTCAATCAGACTCAGATTCTTCAGCTCCCAAGAGTACTCAATATATCAATCATTGGTGTAATAATATGGCTCTATCTTACCATAATATAATGCTTTTTTGTTTGTCAATAAATAATGAATATCCTTTATTTCTTGAGCAGAAGTATTAATCACTCTTCTAATGAAAAAGTCCTTCACCCCATGATTAACTGAGTTTGATTAAGGAACATGATAGTTTTTGGCTTCTTTTAATTGTATTCATACAATTTAATTTGTCCACAAAAAATTGCTAATATTATCTTCTTTTTTTCAATGAAGGGAGTTGTTGGGCATTCTCAGCAATCGCAGCTGTTGAAGGAATAAATAAGATTGTGACAGGAGATCTAATTTCACTATCAGAACAAGAACTGGTGGACTGTGATACATCATACAACGAAGGATGCAATGGTGGACTTATGGATTACGCCTTTGAGTTCATCATCAGTAATGGTGGCATTGACTCTGAAGAGGATTACCCTTACAAGGCTATTGATGGTAGATGTGACCAGAACAGGGTTAGTTACTTGGTCATTGATTTTTTAATGACAATAGTAAATGTTTGTGGAAGATAGTTAATCAGTAGGACTAGTTAGTTAACACTCTAATTCTTTCATTGGTTTTAAACTGTTTGGTTATTCTCTTTGTGCGCAGAAAAATGCTAAAGTTGTTACAATTGATGACTATGAAGATGTTCCTGCTTATGATGAATTGGCCTTGCAAAAGGCTGTTGCAAACCAGCCTATCGCCGTTGCTGTTGAAGGAGGCGGTAGGGAATTCCAGTTATATGAATATGTAAGTTTCTAAATTAATTCTACTATGAAACTAGGAATTTTATACTGTGTTGCATTGGGATAACGTCATAATCAATACTGCAAACGTGTATAAATTGTTATAACTATCCTTCACATATTGATTTTGAATAAAAATCATCTGTCTGGCAAGTGGTTTTGCTATAACTATCCTTCACATTATCTTCAATAGCCTGTTAATTTATTTTTTTTGACTTTGCTTCACAAGATTGGTACATACTGTTATATTTCATGAACTTTCTGTTTGAATGTATTCCATTTGTCTCTTGTCAGGGTGTATTTACCGGTAGATGTGGAACGGCACTAGACCATGGTGTTGCAGCTGTTGGATACGGTACAGAAAATGGGAAAGATTATTGGATTGTGAGAAATTCATGGGGTGGTAGCTGGGGTGAACAAGGTTACATCAGACTCGAACGTAATCTAGCTTCAAGCAGAGCAGGAAAGTGTGGAATTGCGATCGAGCCATCTTATCCAATTAAGAATGGACAGAACCCCCCTAACCCTGGACCATCACCACCTTCACCTATCAAGCCACCATCTGTCTGTGACAGCTACTACAGCTGTGCTGAAGGCTCTACTTGTTGCTGTATTTACGAGTATGGAAGATCTTGCTTTGAGTGGGGATGCTGTCCTCTTGAGTCTGCTACTTGCTGTGATGATCACTACAGTTGCTGCCCTCATGAGTATCCTGTCTGTGACACTCGTGCTGGACTTTGTCTTAAGGTATGTCCAAGTCAACCTTATCTTTTACTTGCTTGCATTTTTGATTGGATTTTCACTTGGAACCAATGCTTTAAAAGCCAAACCGGACATTGAAACGTAAAGACTTCAGTCATGGTTCAACCGTTTTAAACAGCTCAAATTGGAATGAAACCACGATCAAACAGTTTAAATAACCGAACCGTAGATAGTGTCTGTTCATTGCTCAACTGGTTGAACTGTCTTGTCTGGTTCCATTTTTAAAACATTACTTGGAACTAATTGTTGGCTACTATTTTGGATTTTTTTCCTGTTGATATGTCCCTTTTGCGTTCATTTGGACTTTTTGAATTATATTTTATGTTTTCAGTTAAAATATGATTAGTTTTAGCAGAAAAAAACAATTTCTCAATGTTAAGTGTTTGTAAGTGAGTTAAATGAGATAGTTTTCTTAAAAAATTGAGATGCATTATGCATATTATGTTTAGAAGAGCTTATAAAGATAGCTTATAATATATCCATAAGCTGGTTTCAGATTATCGTCATAAGTTTTATGTGATAGCCTATAAATTTTTTATAAAAAGGCTTATGCACTATGCAGAGTTAAACTAATACTCCCTCCGTTTCAAAATGAGTGTCGCTTTAGCCAAAAAAATTTGTTTCAAAATGAATGTCACTTTCAGTTTCCAATGCAATAATAACTTTTTCTTTTCAATTGTACCCTCCAATTAATGCTTTGCACACTACTTCCAAAGTACTACTTTTAAAACTAACCAATAGTTAATAAGGATAATTTGGTAAAATAATCATTTTCTTTCTTTTAATCATTGCATTTCTTAATATGTGTGTAAACACCTAAAACGACACTCATTTTGAAACAGAGGGAGTAAGCTCTAAGTATTATATTATTTGAGTTTATCTGCTGAGACTGTTTGGGAGAACATGGAAAAATAGCCTATAACATGTCTATTATTCGTTTTCTTAATATTTTCATAATTCAGAATAACTTAAGAATACAACTTATAGCTTGAATAAAAACAATTCGACTTTATCCAAACAAAGTCAAATTCTTATGGGAAAAGAACTTATAGAACAAGCTCTTAATTTAGTTGTTTTATCGGGAATTATCCAAATTTGTATGGATTGTTTACACTTTTGCTTATCCAAATTTTTATGTGCTTGATCACAGGGCAAGAATAACCCATTGGGAGTGAAGTCATTCAAACGCACTCCTGCCAAGCCTCACTGGGCCTTTGGTGGTAAGAACAAGATGAGCAATGCTTAA
Protein sequence

>MS.gene063262.t1

MDSAMKLMIVLILATFTVSLALDMSIISYDKTHPDKSTSKRTNEEVLTMYEEWLVKHGKSYNGLGEKDKRFEIFKDNLKFIDEHNGLNSTYRLGLTRFADLTNEEYRSKFLGTKIDPNRRMKKLGGVRSNRYAPRVGDKLPESVDWRKEGAVVGVKDQASCGSCWAFSAIAAVEGINKIVTGDLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIISNGGIDSEEDYPYKAIDGRCDQNRKNAKVVTIDDYEDVPAYDELALQKAVANQPIAVAVEGGGREFQLYEYGVFTGRCGTALDHGVAAVGYGTENGKDYWIVRNSWGGSWGEQGYIRLERNLASSRAGKCGIAIEPSYPIKNGQNPPNPGPSPPSPIKPPSVCDSYYSCAEGSTCCCIYEYGRSCFEWGCCPLESATCCDDHYSCCPHEYPVCDTRAGLCLKGKNNPLGVKSFKRTPAKPHWAFGGKNKMSNA