AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063281

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063281.t1 MTR_8g099750 96.392 194 3 1 1 194 1 190 2.33e-140 390
MS.gene063281.t1 MTR_3g098810 67.327 202 57 3 1 193 1 202 1.32e-92 270
MS.gene063281.t1 MTR_3g098810 75.510 147 34 1 1 145 1 147 1.92e-78 232
MS.gene063281.t1 MTR_7g005280 60.795 176 60 3 1 175 1 168 5.68e-73 221
MS.gene063281.t1 MTR_4g081870 50.307 163 74 4 12 171 7 165 7.95e-51 165
MS.gene063281.t1 MTR_2g080010 47.191 178 77 4 14 183 15 183 2.48e-49 164
MS.gene063281.t1 MTR_7g100990 48.447 161 78 3 13 171 10 167 5.64e-49 162
MS.gene063281.t1 MTR_7g085220 46.821 173 76 5 12 172 6 174 1.01e-48 161
MS.gene063281.t1 MTR_5g041940 51.592 157 71 3 14 168 3 156 1.61e-48 159
MS.gene063281.t1 MTR_4g089135 45.856 181 72 3 13 170 14 191 3.35e-48 160
MS.gene063281.t1 MTR_2g093810 51.948 154 69 3 14 164 14 165 1.03e-47 159
MS.gene063281.t1 MTR_3g088110 48.734 158 74 3 13 168 6 158 2.29e-46 154
MS.gene063281.t1 MTR_8g094580 45.614 171 87 3 9 177 2 168 5.96e-46 153
MS.gene063281.t1 MTR_5g012080 51.220 164 62 7 9 164 2 155 1.77e-45 153
MS.gene063281.t1 MTR_4g036030 45.856 181 81 6 9 183 2 171 3.58e-45 152
MS.gene063281.t1 MTR_2157s0010 46.835 158 77 3 14 164 8 165 4.35e-44 147
MS.gene063281.t1 MTR_4g101680 47.059 170 76 6 9 173 2 162 7.11e-44 149
MS.gene063281.t1 MTR_3g096920 46.552 174 81 6 9 178 2 167 4.67e-43 145
MS.gene063281.t1 MTR_2g068880 43.503 177 88 5 6 170 13 189 1.19e-42 145
MS.gene063281.t1 MTR_8g467490 43.114 167 85 3 8 164 4 170 2.05e-42 146
MS.gene063281.t1 MTR_6g011860 44.444 162 83 3 9 164 10 170 3.05e-42 146
MS.gene063281.t1 MTR_8g076110 43.636 165 78 5 14 173 6 160 3.57e-42 144
MS.gene063281.t1 MTR_2g079990 45.625 160 78 3 14 171 16 168 8.64e-42 144
MS.gene063281.t1 MTR_3g109340 41.176 170 92 2 14 181 22 185 1.24e-41 144
MS.gene063281.t1 MTR_2g068920 45.509 167 78 5 16 170 23 188 1.66e-41 142
MS.gene063281.t1 MTR_8g059170 45.912 159 79 3 14 170 14 167 1.71e-41 142
MS.gene063281.t1 MTR_3g064580 50.323 155 67 4 14 164 6 154 2.73e-41 147
MS.gene063281.t1 MTR_5g076850 44.444 180 82 5 14 183 6 177 3.62e-41 147
MS.gene063281.t1 MTR_3g109340 40.588 170 92 2 14 181 22 184 5.26e-41 142
MS.gene063281.t1 MTR_4g035590 44.751 181 82 6 14 186 8 178 7.64e-41 141
MS.gene063281.t1 MTR_5g021710 43.860 171 81 5 14 179 8 168 8.32e-41 141
MS.gene063281.t1 MTR_1g096430 45.161 155 71 3 14 163 7 152 1.36e-40 140
MS.gene063281.t1 MTR_2g062730 42.941 170 84 4 10 174 6 167 1.83e-40 140
MS.gene063281.t1 MTR_8g024480 42.458 179 86 5 2 168 3 176 2.77e-40 142
MS.gene063281.t1 MTR_5g090970 45.562 169 79 5 16 174 20 185 3.22e-40 139
MS.gene063281.t1 MTR_5g090970 45.833 168 79 5 16 174 20 184 3.32e-40 139
MS.gene063281.t1 MTR_2g078700 42.593 162 88 2 12 171 21 179 3.40e-40 140
MS.gene063281.t1 MTR_6g084430 43.791 153 75 3 14 164 5 148 4.09e-40 139
MS.gene063281.t1 MTR_3g435150 44.375 160 82 3 14 171 16 170 4.47e-40 138
MS.gene063281.t1 MTR_4g108760 43.125 160 84 3 14 171 17 171 5.78e-40 139
MS.gene063281.t1 MTR_5g040420 51.587 126 59 1 16 139 16 141 8.50e-40 139
MS.gene063281.t1 MTR_3g093040 41.667 180 86 5 14 183 108 278 1.35e-39 137
MS.gene063281.t1 MTR_6g477900 45.399 163 76 4 14 172 6 159 2.57e-39 134
MS.gene063281.t1 MTR_3g096140 42.604 169 80 5 16 175 9 169 4.01e-39 135
MS.gene063281.t1 MTR_1g008740 41.040 173 85 4 14 179 13 175 1.28e-38 135
MS.gene063281.t1 MTR_1g008740 41.040 173 85 4 14 179 27 189 1.69e-38 135
MS.gene063281.t1 MTR_3g096140 42.604 169 80 5 16 175 9 169 3.64e-38 134
MS.gene063281.t1 MTR_3g093050 41.530 183 89 5 11 184 19 192 4.99e-38 138
MS.gene063281.t1 MTR_3g096920 46.897 145 72 2 9 151 2 143 5.84e-38 133
MS.gene063281.t1 MTR_3g093050 41.530 183 89 5 11 184 19 192 7.65e-38 137
MS.gene063281.t1 MTR_5g014300 43.293 164 76 4 10 164 2 157 8.90e-38 133
MS.gene063281.t1 MTR_2g079990 39.344 183 84 3 14 171 16 196 9.58e-38 134
MS.gene063281.t1 MTR_2g064090 49.618 131 60 2 14 140 6 134 1.02e-37 133
MS.gene063281.t1 MTR_6g012670 40.994 161 88 3 13 171 19 174 1.06e-37 132
MS.gene063281.t1 MTR_4g134460 46.250 160 74 5 16 173 56 205 1.40e-37 134
MS.gene063281.t1 MTR_5g069030 46.875 160 70 4 11 164 22 172 2.29e-37 136
MS.gene063281.t1 MTR_4g098630 40.957 188 95 4 12 191 4 183 2.45e-37 131
MS.gene063281.t1 MTR_7g085260 43.226 155 81 3 14 164 17 168 4.03e-37 132
MS.gene063281.t1 MTR_3g070030 43.030 165 86 4 7 168 12 171 5.06e-37 131
MS.gene063281.t1 MTR_8g023840 42.949 156 73 4 14 164 11 155 2.47e-36 130
MS.gene063281.t1 MTR_1g069805 40.625 160 84 3 7 164 3 153 3.07e-36 127
MS.gene063281.t1 MTR_6g032770 38.095 168 97 3 14 179 18 180 1.01e-35 129
MS.gene063281.t1 MTR_3g116070 45.736 129 67 2 14 139 23 151 3.37e-35 127
MS.gene063281.t1 MTR_4g075980 49.606 127 61 2 16 139 17 143 4.63e-35 125
MS.gene063281.t1 MTR_8g093580 39.655 174 90 4 10 175 2 168 5.60e-35 128
MS.gene063281.t1 MTR_7g097090 41.935 155 79 3 12 164 8 153 5.83e-35 125
MS.gene063281.t1 MTR_8g063550 39.080 174 91 4 10 175 2 168 7.99e-35 125
MS.gene063281.t1 MTR_8g023860 42.138 159 76 4 11 164 9 156 8.92e-35 127
MS.gene063281.t1 MTR_8g063550 39.080 174 91 4 10 175 2 168 1.79e-34 126
MS.gene063281.t1 MTR_8g063550 39.080 174 91 4 10 175 2 168 3.06e-34 125
MS.gene063281.t1 MTR_1g090720 45.513 156 78 3 14 164 42 195 4.82e-34 126
MS.gene063281.t1 MTR_2g086880 45.038 131 67 2 10 137 14 142 5.58e-34 127
MS.gene063281.t1 MTR_2g086880 45.038 131 67 2 10 137 14 142 6.49e-34 126
MS.gene063281.t1 MTR_2g064470 38.125 160 89 4 12 169 9 160 3.13e-33 120
MS.gene063281.t1 MTR_7g011130 43.704 135 72 2 7 139 12 144 1.07e-32 120
MS.gene063281.t1 MTR_7g011120 37.427 171 99 4 7 171 1 169 1.34e-32 119
MS.gene063281.t1 MTR_1g097300 48.438 128 60 2 16 139 21 146 2.06e-32 122
MS.gene063281.t1 MTR_8g023930 40.606 165 82 4 14 173 24 177 3.53e-32 120
MS.gene063281.t1 MTR_1g090723 39.157 166 86 5 16 175 10 166 4.90e-32 121
MS.gene063281.t1 MTR_1g090723 39.157 166 86 5 16 175 10 166 4.93e-32 121
MS.gene063281.t1 MTR_3g070040 41.558 154 86 3 18 171 12 161 8.19e-32 117
MS.gene063281.t1 MTR_1g090723 39.157 166 87 5 16 175 10 167 9.30e-32 120
MS.gene063281.t1 MTR_0036s0150 39.157 166 86 5 16 175 7 163 4.50e-31 118
MS.gene063281.t1 MTR_4g052620 40.000 160 86 4 14 166 5 161 4.91e-31 114
MS.gene063281.t1 MTR_2g086690 40.625 160 84 4 15 166 5 161 1.15e-30 112
MS.gene063281.t1 MTR_8g023900 40.523 153 75 4 17 164 196 337 6.74e-30 114
MS.gene063281.t1 MTR_8g023900 39.103 156 81 5 14 164 12 158 7.40e-28 108
MS.gene063281.t1 MTR_4g094302 41.732 127 66 3 14 139 11 130 7.62e-30 108
MS.gene063281.t1 MTR_4g094302 37.107 159 91 4 14 170 11 162 8.30e-30 108
MS.gene063281.t1 MTR_3g096140 39.610 154 76 5 31 175 3 148 1.01e-29 112
MS.gene063281.t1 MTR_7g070140 62.821 78 29 0 62 139 14 91 5.88e-29 105
MS.gene063281.t1 MTR_7g105170 37.500 160 89 4 14 164 4 161 2.48e-28 107
MS.gene063281.t1 MTR_8g094580 44.248 113 59 2 65 177 6 114 8.23e-27 102
MS.gene063281.t1 MTR_8g093790 32.934 167 83 7 13 177 9 148 6.54e-23 90.9
MS.gene063281.t1 MTR_8g023880 33.721 172 80 6 12 164 5 161 8.84e-22 89.7
MS.gene063281.t1 MTR_3g096400 31.902 163 90 7 13 164 6 158 7.85e-18 78.2
MS.gene063281.t1 MTR_7g070150 49.231 65 23 2 110 173 8 63 9.52e-16 69.7
MS.gene063281.t1 MTR_7g083330 27.957 186 110 8 13 194 17 182 4.84e-15 70.5
MS.gene063281.t1 MTR_7g083370 28.148 135 89 4 7 137 3 133 4.64e-14 66.6
MS.gene063281.t1 MTR_7g116460 29.825 171 98 6 20 180 11 169 3.14e-13 65.9
MS.gene063281.t1 MTR_2g014680 32.000 150 79 8 9 139 48 193 1.74e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063281.t1 AT5G13180 61.628 172 57 3 1 171 1 164 1.49e-70 215
MS.gene063281.t1 AT2G33480 58.480 171 62 4 1 170 1 163 3.53e-64 199
MS.gene063281.t1 AT2G33480 57.895 171 61 4 1 170 1 161 2.14e-63 197
MS.gene063281.t1 AT3G04070 46.512 172 85 3 8 172 4 175 7.98e-51 167
MS.gene063281.t1 AT1G69490 51.613 155 70 3 12 164 7 158 9.04e-50 162
MS.gene063281.t1 AT1G77450 46.073 191 88 6 6 186 1 186 7.94e-48 157
MS.gene063281.t1 AT1G61110 50.595 168 71 5 7 164 9 174 1.10e-47 158
MS.gene063281.t1 AT3G15510 50.323 155 69 3 18 164 21 175 1.48e-47 159
MS.gene063281.t1 AT3G04070 42.553 188 85 4 8 172 4 191 2.25e-47 159
MS.gene063281.t1 AT1G01720 45.977 174 82 4 13 184 6 169 6.56e-46 153
MS.gene063281.t1 AT4G17980 46.541 159 78 2 10 164 2 157 8.71e-46 152
MS.gene063281.t1 AT4G17980 46.541 159 78 2 10 164 2 157 2.39e-45 152
MS.gene063281.t1 AT5G46590 46.914 162 77 3 10 167 2 158 5.47e-45 150
MS.gene063281.t1 AT5G39610 46.250 160 79 3 14 171 20 174 6.06e-44 148
MS.gene063281.t1 AT5G46590 49.669 151 70 3 10 156 2 150 1.06e-43 147
MS.gene063281.t1 AT1G12260 42.857 182 84 6 9 180 2 173 1.24e-43 149
MS.gene063281.t1 AT1G12260 42.857 182 84 6 9 180 2 173 4.11e-43 148
MS.gene063281.t1 AT1G62700 44.199 181 85 5 9 183 2 172 6.57e-43 148
MS.gene063281.t1 AT1G62700 44.199 181 85 5 9 183 2 172 6.57e-43 148
MS.gene063281.t1 AT1G33060 48.387 155 69 3 14 164 24 171 8.67e-43 151
MS.gene063281.t1 AT1G33060 48.387 155 69 3 14 164 24 171 9.49e-43 151
MS.gene063281.t1 AT4G27410 45.625 160 77 4 14 171 14 165 9.65e-43 145
MS.gene063281.t1 AT3G10490 45.283 159 75 4 11 164 24 175 1.67e-42 142
MS.gene063281.t1 AT1G52890 46.250 160 77 3 14 171 14 166 3.18e-42 144
MS.gene063281.t1 AT5G62380 44.253 174 83 5 11 179 4 168 4.07e-42 145
MS.gene063281.t1 AT5G62380 44.253 174 83 5 11 179 4 168 4.07e-42 145
MS.gene063281.t1 AT3G15500 46.250 160 77 3 14 171 14 166 4.39e-42 144
MS.gene063281.t1 AT5G63790 43.558 163 87 2 14 174 50 209 1.06e-41 143
MS.gene063281.t1 AT5G63790 43.558 163 87 2 14 174 60 219 1.29e-41 143
MS.gene063281.t1 AT3G10480 45.570 158 75 3 11 164 24 174 1.39e-41 145
MS.gene063281.t1 AT1G32770 41.989 181 85 4 2 168 4 178 1.44e-41 144
MS.gene063281.t1 AT1G71930 45.860 157 71 4 12 163 7 154 1.65e-41 142
MS.gene063281.t1 AT1G71930 45.860 157 71 4 12 163 7 154 1.65e-41 142
MS.gene063281.t1 AT2G18060 43.860 171 81 5 14 179 9 169 1.94e-41 143
MS.gene063281.t1 AT2G18060 43.860 171 81 5 14 179 9 169 1.94e-41 143
MS.gene063281.t1 AT1G65910 48.387 155 69 3 14 164 6 153 2.08e-41 147
MS.gene063281.t1 AT5G08790 44.172 163 86 2 14 174 7 166 2.34e-41 141
MS.gene063281.t1 AT5G39820 42.515 167 78 3 16 164 22 188 2.97e-41 142
MS.gene063281.t1 AT1G76420 45.098 153 76 2 14 164 22 168 6.32e-41 141
MS.gene063281.t1 AT5G07680 43.750 160 83 3 14 171 3 157 7.05e-41 140
MS.gene063281.t1 AT5G61430 43.750 160 83 3 14 171 16 170 7.27e-41 141
MS.gene063281.t1 AT5G07680 43.750 160 83 3 14 171 17 171 9.15e-41 140
MS.gene063281.t1 AT1G52880 46.914 162 75 4 18 170 21 180 1.69e-40 140
MS.gene063281.t1 AT3G10490 45.283 159 75 4 11 164 24 175 1.83e-40 142
MS.gene063281.t1 AT1G79580 45.181 166 73 4 10 168 13 167 1.84e-40 141
MS.gene063281.t1 AT1G79580 45.181 166 73 4 10 168 13 167 1.84e-40 141
MS.gene063281.t1 AT1G79580 45.181 166 73 4 10 168 13 167 1.84e-40 141
MS.gene063281.t1 AT1G79580 45.181 166 73 4 10 168 13 167 1.84e-40 141
MS.gene063281.t1 AT1G79580 45.181 166 73 4 10 168 13 167 1.84e-40 141
MS.gene063281.t1 AT4G10350 45.000 160 76 3 14 168 9 161 2.45e-40 140
MS.gene063281.t1 AT4G36160 44.375 160 75 4 14 168 10 160 2.90e-40 140
MS.gene063281.t1 AT4G36160 44.375 160 75 4 14 168 10 160 2.90e-40 140
MS.gene063281.t1 AT3G04060 44.586 157 79 4 11 164 17 168 3.06e-40 139
MS.gene063281.t1 AT4G36160 44.375 160 75 4 14 168 14 164 3.17e-40 140
MS.gene063281.t1 AT3G10480 45.283 159 75 4 11 164 24 175 3.81e-40 142
MS.gene063281.t1 AT2G24430 42.945 163 85 2 14 174 16 172 5.09e-40 138
MS.gene063281.t1 AT2G24430 42.945 163 85 2 14 174 16 172 5.09e-40 138
MS.gene063281.t1 AT1G26870 43.949 157 82 2 14 164 16 172 5.58e-40 140
MS.gene063281.t1 AT1G32510 45.029 171 81 3 12 173 4 170 5.79e-40 137
MS.gene063281.t1 AT5G66300 43.902 164 78 4 14 172 12 166 6.88e-40 137
MS.gene063281.t1 AT4G35580 46.497 157 69 4 14 164 9 156 6.93e-40 142
MS.gene063281.t1 AT4G35580 46.497 157 69 4 14 164 9 156 7.76e-40 142
MS.gene063281.t1 AT4G35580 46.497 157 69 4 14 164 9 156 8.01e-40 142
MS.gene063281.t1 AT4G27410 41.808 177 76 5 14 171 14 182 1.03e-39 137
MS.gene063281.t1 AT3G61910 40.223 179 82 4 4 164 1 172 1.29e-39 138
MS.gene063281.t1 AT3G29035 46.528 144 73 2 14 155 24 165 1.90e-39 137
MS.gene063281.t1 AT5G17260 45.614 171 81 5 14 180 6 168 1.96e-39 140
MS.gene063281.t1 AT3G15170 40.373 161 85 3 12 167 18 172 2.59e-39 136
MS.gene063281.t1 AT3G03200 46.452 155 73 4 14 164 6 154 3.12e-39 140
MS.gene063281.t1 AT1G33280 43.750 176 81 5 14 181 8 173 4.11e-39 136
MS.gene063281.t1 AT3G17730 44.172 163 78 4 14 172 6 159 4.37e-39 134
MS.gene063281.t1 AT2G46770 41.954 174 84 5 9 168 11 181 4.74e-39 137
MS.gene063281.t1 AT3G18400 43.137 153 77 3 14 164 5 149 5.43e-39 135
MS.gene063281.t1 AT2G02450 44.086 186 83 7 16 190 53 228 7.18e-39 137
MS.gene063281.t1 AT5G53950 43.590 156 77 3 14 164 17 166 7.48e-39 137
MS.gene063281.t1 AT2G02450 44.086 186 83 7 16 190 53 228 8.50e-39 137
MS.gene063281.t1 AT3G12977 39.378 193 93 6 12 191 16 197 5.05e-38 132
MS.gene063281.t1 AT5G18270 42.683 164 86 4 4 164 11 169 6.85e-38 133
MS.gene063281.t1 AT5G18270 42.683 164 86 4 4 164 11 169 7.46e-38 133
MS.gene063281.t1 AT2G17040 50.394 127 60 2 16 139 8 134 7.87e-38 132
MS.gene063281.t1 AT3G10500 41.954 174 86 4 8 175 3 167 1.09e-37 136
MS.gene063281.t1 AT2G43000 43.312 157 81 3 16 170 20 170 3.23e-37 130
MS.gene063281.t1 AT1G54330 45.255 137 69 2 14 146 6 140 3.08e-36 128
MS.gene063281.t1 AT3G12910 41.765 170 88 4 16 174 23 192 5.31e-36 128
MS.gene063281.t1 AT5G24590 44.304 158 78 4 11 164 10 161 1.10e-35 130
MS.gene063281.t1 AT1G56010 39.521 167 88 5 12 172 17 176 2.57e-35 126
MS.gene063281.t1 AT5G04410 38.418 177 94 4 8 176 3 172 4.26e-35 129
MS.gene063281.t1 AT3G10480 37.824 193 75 5 10 164 23 208 6.68e-35 129
MS.gene063281.t1 AT5G09330 42.938 177 82 6 10 176 2 169 1.63e-34 127
MS.gene063281.t1 AT5G09330 42.938 177 82 6 10 176 2 169 1.63e-34 127
MS.gene063281.t1 AT5G09330 42.938 177 82 6 10 176 2 169 1.63e-34 127
MS.gene063281.t1 AT5G09330 42.938 177 82 6 10 176 2 169 1.63e-34 127
MS.gene063281.t1 AT5G09330 42.938 177 82 6 10 176 2 169 1.63e-34 127
MS.gene063281.t1 AT5G04395 44.366 142 63 2 14 139 28 169 2.54e-34 120
MS.gene063281.t1 AT3G49530 46.512 129 64 2 14 138 13 140 4.25e-34 125
MS.gene063281.t1 AT3G49530 46.512 129 64 2 14 138 13 140 8.70e-34 125
MS.gene063281.t1 AT3G44290 36.702 188 97 5 7 191 7 175 1.35e-33 119
MS.gene063281.t1 AT5G64060 39.205 176 90 5 10 176 2 169 3.22e-33 122
MS.gene063281.t1 AT1G34180 50.000 132 60 2 16 143 18 147 3.51e-33 123
MS.gene063281.t1 AT1G34180 50.781 128 57 2 16 139 18 143 7.49e-33 123
MS.gene063281.t1 AT3G44290 36.702 188 97 5 7 191 7 175 1.05e-32 120
MS.gene063281.t1 AT2G27300 37.158 183 94 4 1 180 1 165 3.37e-32 119
MS.gene063281.t1 AT5G22290 37.143 175 89 5 16 186 23 180 3.53e-32 119
MS.gene063281.t1 AT1G34190 48.438 128 60 2 16 139 18 143 5.13e-32 121
MS.gene063281.t1 AT2G33480 51.786 112 46 3 59 170 3 106 8.46e-32 114
MS.gene063281.t1 AT1G34180 46.429 140 57 2 16 139 18 155 1.71e-31 119
MS.gene063281.t1 AT4G28530 37.569 181 86 4 7 169 3 174 2.16e-31 117
MS.gene063281.t1 AT1G34180 46.429 140 57 2 16 139 18 155 2.92e-31 119
MS.gene063281.t1 AT5G50820 37.209 172 98 6 6 173 8 173 4.38e-29 107
MS.gene063281.t1 AT4G01520 43.939 132 67 4 15 139 5 136 9.19e-28 106
MS.gene063281.t1 AT5G14000 34.940 166 96 3 7 170 8 163 4.36e-27 102
MS.gene063281.t1 AT4G01550 44.961 129 65 3 17 139 7 135 5.35e-27 106
MS.gene063281.t1 AT5G64530 41.732 127 62 3 14 139 3 118 1.39e-26 99.8
MS.gene063281.t1 AT5G14000 37.778 135 80 2 7 139 8 140 2.09e-26 99.4
MS.gene063281.t1 AT5G64530 36.025 161 82 4 14 164 3 152 2.36e-26 100
MS.gene063281.t1 AT1G32870 47.826 138 60 5 7 139 5 135 4.79e-26 104
MS.gene063281.t1 AT4G01540 43.077 130 67 4 17 139 7 136 4.82e-26 103
MS.gene063281.t1 AT1G32870 47.826 138 60 5 7 139 5 135 5.10e-26 104
MS.gene063281.t1 AT4G01540 43.077 130 67 4 17 139 7 136 5.37e-26 103
MS.gene063281.t1 AT1G32870 47.826 138 60 5 7 139 41 171 5.38e-26 104
MS.gene063281.t1 AT4G01540 43.077 130 67 4 17 139 7 136 1.02e-25 103
MS.gene063281.t1 AT4G01540 43.077 130 67 4 17 139 7 136 1.53e-25 102
MS.gene063281.t1 AT1G02230 33.721 172 94 6 15 179 4 162 7.91e-24 97.1
MS.gene063281.t1 AT3G12977 40.299 134 64 4 66 191 19 144 8.71e-24 94.4
MS.gene063281.t1 AT5G22380 35.484 186 102 6 17 194 8 183 1.62e-23 94.0
MS.gene063281.t1 AT4G10350 43.519 108 54 2 61 168 14 114 2.05e-23 94.7
MS.gene063281.t1 AT1G02250 34.946 186 89 7 15 184 4 173 3.14e-23 95.1
MS.gene063281.t1 AT3G44350 39.161 143 77 4 14 149 5 144 6.30e-23 90.5
MS.gene063281.t1 AT5G61430 42.056 107 57 2 65 171 6 107 1.49e-22 92.0
MS.gene063281.t1 AT3G44350 36.025 161 91 5 17 170 8 163 4.73e-22 90.1
MS.gene063281.t1 AT1G56010 41.346 104 57 2 69 172 10 109 9.70e-22 89.7
MS.gene063281.t1 AT3G04420 38.760 129 71 3 15 137 4 130 3.02e-21 89.0
MS.gene063281.t1 AT3G04420 38.931 131 68 4 15 137 4 130 4.05e-21 89.4
MS.gene063281.t1 AT1G01010 38.060 134 69 4 17 138 6 137 1.49e-20 88.6
MS.gene063281.t1 AT3G10490 46.341 82 36 3 84 164 1 75 7.18e-19 83.2
MS.gene063281.t1 AT3G10490 46.341 82 36 3 84 164 1 75 7.18e-19 83.2
MS.gene063281.t1 AT1G02220 38.760 129 68 4 15 137 4 127 5.94e-18 80.9
MS.gene063281.t1 AT2G18060 45.556 90 39 4 90 179 2 81 1.38e-17 79.0
MS.gene063281.t1 AT2G43000 43.617 94 47 2 77 170 5 92 1.52e-17 77.0
MS.gene063281.t1 AT3G56530 31.056 161 87 6 14 164 52 198 9.55e-17 77.0
MS.gene063281.t1 AT3G04430 33.333 177 95 7 20 175 6 180 9.33e-16 72.4
MS.gene063281.t1 AT4G28530 28.571 168 102 2 7 156 3 170 7.13e-15 71.6
MS.gene063281.t1 AT5G22290 38.144 97 42 4 91 186 2 81 3.11e-13 66.2
MS.gene063281.t1 AT1G28470 31.875 160 87 9 2 143 66 221 9.77e-13 65.9
MS.gene063281.t1 AT3G55210 24.855 173 103 4 14 170 11 172 4.39e-12 63.5

Find 45 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAACATTAATCTCGAATT+AGG 0.265228 4.2:+7318553 None:intergenic
AAAAGAAGTGGTATAGAATA+TGG 0.284193 4.2:-7318601 MS.gene063281:CDS
ATTTCTATACTTTGCTTCCT+TGG 0.288379 4.2:+7319109 None:intergenic
AATCAGTTCTAGACCCATTT+GGG 0.329258 4.2:+7318955 None:intergenic
GAACAACAAAATGTGGATAT+TGG 0.340464 4.2:-7319070 MS.gene063281:CDS
TCAACTTGTAATGGCATTGT+AGG 0.349375 4.2:-7319014 MS.gene063281:CDS
CAATCAGTTCTAGACCCATT+TGG 0.376037 4.2:+7318954 None:intergenic
ATTTCATCTTCAACTTGTAA+TGG 0.394997 4.2:-7319023 MS.gene063281:CDS
TGTGGATATTGGAAGGCAAC+AGG 0.396475 4.2:-7319059 MS.gene063281:CDS
CAGAACTATGGAAATGAGAT+AGG 0.425461 4.2:-7318655 MS.gene063281:CDS
TGTTTGCAAGTATGATCCTT+GGG 0.435717 4.2:-7319618 MS.gene063281:CDS
CAAAGTATAGAAATAGTAAT+CGG 0.458697 4.2:-7319100 MS.gene063281:CDS
TTCTGTGTCGGTTATCTGTA+AGG 0.460976 4.2:-7318624 MS.gene063281:CDS
AACATTGACCTCAGGAATGA+TGG 0.468324 4.2:+7319637 None:intergenic
AACACAAGCTCTTCATCTGT+TGG 0.471066 4.2:+7319704 None:intergenic
CAAGCTCTTCATCTGTTGGT+TGG 0.493179 4.2:+7319708 None:intergenic
TATGAAGGGAAATCCCCAAA+TGG 0.497265 4.2:-7318969 MS.gene063281:CDS
TGGAAATGAGATAGGAGAAT+GGG 0.504294 4.2:-7318647 MS.gene063281:CDS
TATGATCCTTGGGATTTGCC+AGG 0.504380 4.2:-7319608 MS.gene063281:intron
ATGTTTGCAAGTATGATCCT+TGG 0.507170 4.2:-7319619 MS.gene063281:CDS
AGGAATGATGGAAGCAGGCA+AGG 0.516507 4.2:+7319649 None:intergenic
ACCTCAGGAATGATGGAAGC+AGG 0.516623 4.2:+7319644 None:intergenic
ATGAAGGGAAATCCCCAAAT+GGG 0.516990 4.2:-7318968 MS.gene063281:CDS
AACAAAATGTGGATATTGGA+AGG 0.533417 4.2:-7319066 MS.gene063281:CDS
GCCTGCTTCCATCATTCCTG+AGG 0.534650 4.2:-7319645 MS.gene063281:CDS
CAACTTGTAATGGCATTGTA+GGG 0.535602 4.2:-7319013 MS.gene063281:CDS
ATGGAAATGAGATAGGAGAA+TGG 0.536346 4.2:-7318648 MS.gene063281:CDS
TACTTGCAAACATTGACCTC+AGG 0.544904 4.2:+7319629 None:intergenic
GGAATGATGGAAGCAGGCAA+GGG 0.549247 4.2:+7319650 None:intergenic
CAAATGGGTCTAGAACTGAT+TGG 0.560786 4.2:-7318953 MS.gene063281:CDS
ATGAGTAGAACAACAAAATG+TGG 0.563550 4.2:-7319077 MS.gene063281:CDS
AACATTAATCTCGAATTAGG+AGG 0.573486 4.2:+7318556 None:intergenic
TACTGACCTGGCAAATCCCA+AGG 0.595838 4.2:+7319602 None:intergenic
TAGGAGAATGGGTTCTGTGT+CGG 0.601018 4.2:-7318636 MS.gene063281:CDS
TAGTAGTTTCCACATTGATG+AGG 0.604094 4.2:+7318913 None:intergenic
GGAGTGAGTAGATTGCCTCC+TGG 0.605400 4.2:-7319740 MS.gene063281:CDS
GTGGATATTGGAAGGCAACA+GGG 0.617430 4.2:-7319058 MS.gene063281:CDS
ATCAGTTCTAGACCCATTTG+GGG 0.628898 4.2:+7318956 None:intergenic
GTTGGTTGGAAACGAAAACC+AGG 0.630000 4.2:+7319722 None:intergenic
GAATGATGGAAGCAGGCAAG+GGG 0.638798 4.2:+7319651 None:intergenic
TGAATATCGCCTCATCAATG+TGG 0.647802 4.2:-7318922 MS.gene063281:CDS
AACTACTAACAACTCAACCC+AGG 0.658665 4.2:-7318898 MS.gene063281:intron
TTATCTGTAAGGAAAAGAAG+TGG 0.666564 4.2:-7318613 MS.gene063281:CDS
GAGGTTGTGATGAACAAGAG+AGG 0.686120 4.2:-7319145 MS.gene063281:CDS
GGTTGGAAACGAAAACCAGG+AGG 0.757632 4.2:+7319725 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATTTAGTGTAAAAA+AGG + chr4.2:7318973-7318992 None:intergenic 10.0%
!!! CTTTTCTAAAAAAAAATTTA+TGG - chr4.2:7318838-7318857 MS.gene063281:intron 10.0%
!!! AAGCTGAATTTTATTAAAAA+TGG - chr4.2:7318549-7318568 MS.gene063281:CDS 15.0%
!!! TAAATCTTATTAACTAGTTT+TGG - chr4.2:7319043-7319062 MS.gene063281:CDS 15.0%
!! CAAAGTATAGAAATAGTAAT+CGG - chr4.2:7319210-7319229 MS.gene063281:intron 20.0%
!! GAAATTATAACTTTAAGCAA+CGG - chr4.2:7319462-7319481 MS.gene063281:intron 20.0%
!! TAGCCATTAACAAATAATAA+AGG - chr4.2:7319093-7319112 MS.gene063281:CDS 20.0%
!! TTTGTAAAAAAAATCAACGT+TGG - chr4.2:7318808-7318827 MS.gene063281:intron 20.0%
!!! TAATTTAACTTTTTTTGGGT+TGG - chr4.2:7319632-7319651 MS.gene063281:CDS 20.0%
!!! TCTCCTTTATTATTTGTTAA+TGG + chr4.2:7319099-7319118 None:intergenic 20.0%
!!! TTAACATTGTTTTGTTTGAT+TGG - chr4.2:7319133-7319152 MS.gene063281:CDS 20.0%
! AAAAAAAATTTATGGTAGCC+AGG - chr4.2:7318846-7318865 MS.gene063281:intron 25.0%
! AAAAGAAGTGGTATAGAATA+TGG - chr4.2:7319709-7319728 MS.gene063281:CDS 25.0%
! ATTTCATCTTCAACTTGTAA+TGG - chr4.2:7319287-7319306 MS.gene063281:intron 25.0%
! GACAATGTATAATATATGCA+AGG + chr4.2:7318886-7318905 None:intergenic 25.0%
! TAACAAATTAATACTACACC+CGG - chr4.2:7318736-7318755 MS.gene063281:intron 25.0%
! TCAAACATTAATCTCGAATT+AGG + chr4.2:7319760-7319779 None:intergenic 25.0%
! TTTGTTTGATTGGTATGTAT+AGG - chr4.2:7319143-7319162 MS.gene063281:CDS 25.0%
!!! AAAACTTTGGTTTTCTATGA+AGG - chr4.2:7319326-7319345 MS.gene063281:intron 25.0%
!!! AAACTTTGGTTTTCTATGAA+GGG - chr4.2:7319327-7319346 MS.gene063281:intron 25.0%
AAATGCGTAAGTAATTACCT+GGG + chr4.2:7319432-7319451 None:intergenic 30.0%
AACAAAATGTGGATATTGGA+AGG - chr4.2:7319244-7319263 MS.gene063281:intron 30.0%
AACAAATTAATACTACACCC+GGG - chr4.2:7318737-7318756 MS.gene063281:intron 30.0%
AACATTAATCTCGAATTAGG+AGG + chr4.2:7319757-7319776 None:intergenic 30.0%
ATGAGTAGAACAACAAAATG+TGG - chr4.2:7319233-7319252 MS.gene063281:intron 30.0%
ATTTCTATACTTTGCTTCCT+TGG + chr4.2:7319204-7319223 None:intergenic 30.0%
GAACAACAAAATGTGGATAT+TGG - chr4.2:7319240-7319259 MS.gene063281:intron 30.0%
TGTATAATATATGCAAGGTC+TGG + chr4.2:7318881-7318900 None:intergenic 30.0%
TTATCTGTAAGGAAAAGAAG+TGG - chr4.2:7319697-7319716 MS.gene063281:CDS 30.0%
! CTCATTTTCACAAAACTGAT+TGG - chr4.2:7318765-7318784 MS.gene063281:intron 30.0%
!! TTTGTTATTAGTTACTGACC+TGG + chr4.2:7318723-7318742 None:intergenic 30.0%
ATGGAAATGAGATAGGAGAA+TGG - chr4.2:7319662-7319681 MS.gene063281:CDS 35.0%
ATGTTTGCAAGTATGATCCT+TGG - chr4.2:7318691-7318710 MS.gene063281:intron 35.0%
CAAATGCGTAAGTAATTACC+TGG + chr4.2:7319433-7319452 None:intergenic 35.0%
CAACTTGTAATGGCATTGTA+GGG - chr4.2:7319297-7319316 MS.gene063281:intron 35.0%
CAGAACTATGGAAATGAGAT+AGG - chr4.2:7319655-7319674 MS.gene063281:CDS 35.0%
GTTTGATTGGTATGTATAGG+AGG - chr4.2:7319146-7319165 MS.gene063281:CDS 35.0%
TAGTAGTTTCCACATTGATG+AGG + chr4.2:7319400-7319419 None:intergenic 35.0%
TCAACTTGTAATGGCATTGT+AGG - chr4.2:7319296-7319315 MS.gene063281:intron 35.0%
TGGAAATGAGATAGGAGAAT+GGG - chr4.2:7319663-7319682 MS.gene063281:CDS 35.0%
TGTAGGGCTAAGAAAAACTT+TGG - chr4.2:7319313-7319332 MS.gene063281:intron 35.0%
TGTTTGCAAGTATGATCCTT+GGG - chr4.2:7318692-7318711 MS.gene063281:intron 35.0%
TTGTGAAAATGAGTTAGACC+CGG + chr4.2:7318758-7318777 None:intergenic 35.0%
!! AATCAGTTCTAGACCCATTT+GGG + chr4.2:7319358-7319377 None:intergenic 35.0%
AACACAAGCTCTTCATCTGT+TGG + chr4.2:7318609-7318628 None:intergenic 40.0%
AACATTGACCTCAGGAATGA+TGG + chr4.2:7318676-7318695 None:intergenic 40.0%
AACTACTAACAACTCAACCC+AGG - chr4.2:7319412-7319431 MS.gene063281:intron 40.0%
ATGAAGGGAAATCCCCAAAT+GGG - chr4.2:7319342-7319361 MS.gene063281:intron 40.0%
TACTTGCAAACATTGACCTC+AGG + chr4.2:7318684-7318703 None:intergenic 40.0%
TATGAAGGGAAATCCCCAAA+TGG - chr4.2:7319341-7319360 MS.gene063281:intron 40.0%
TGAATATCGCCTCATCAATG+TGG - chr4.2:7319388-7319407 MS.gene063281:intron 40.0%
TGTGAAAATGAGTTAGACCC+GGG + chr4.2:7318757-7318776 None:intergenic 40.0%
! AAGGTCTGGAATTCAAATCC+TGG + chr4.2:7318867-7318886 None:intergenic 40.0%
! CAAATGGGTCTAGAACTGAT+TGG - chr4.2:7319357-7319376 MS.gene063281:intron 40.0%
! TGAGCTTAGATCAGTTGGTA+GGG + chr4.2:7318908-7318927 None:intergenic 40.0%
!! ATCAGTTCTAGACCCATTTG+GGG + chr4.2:7319357-7319376 None:intergenic 40.0%
!! CAATCAGTTCTAGACCCATT+TGG + chr4.2:7319359-7319378 None:intergenic 40.0%
!! TTCTGTGTCGGTTATCTGTA+AGG - chr4.2:7319686-7319705 MS.gene063281:CDS 40.0%
!!! TTTTTGGGTTGGCAGAACTA+TGG - chr4.2:7319643-7319662 MS.gene063281:CDS 40.0%
CAAGCTCTTCATCTGTTGGT+TGG + chr4.2:7318605-7318624 None:intergenic 45.0%
GAGGTTGTGATGAACAAGAG+AGG - chr4.2:7319165-7319184 MS.gene063281:intron 45.0%
GTGAGCTTAGATCAGTTGGT+AGG + chr4.2:7318909-7318928 None:intergenic 45.0%
GTGGATATTGGAAGGCAACA+GGG - chr4.2:7319252-7319271 MS.gene063281:intron 45.0%
GTTGGTTGGAAACGAAAACC+AGG + chr4.2:7318591-7318610 None:intergenic 45.0%
TATGATCCTTGGGATTTGCC+AGG - chr4.2:7318702-7318721 MS.gene063281:intron 45.0%
TGTGGATATTGGAAGGCAAC+AGG - chr4.2:7319251-7319270 MS.gene063281:intron 45.0%
! TAGGAGAATGGGTTCTGTGT+CGG - chr4.2:7319674-7319693 MS.gene063281:CDS 45.0%
!!! AATATAATTTAACTTTTTTT+GGG - chr4.2:7319628-7319647 MS.gene063281:CDS 5.0%
!!! TAATATAATTTAACTTTTTT+TGG - chr4.2:7319627-7319646 MS.gene063281:CDS 5.0%
CCAACTGATCTAAGCTCACG+AGG - chr4.2:7318910-7318929 MS.gene063281:CDS 50.0%
CCTCGTGAGCTTAGATCAGT+TGG + chr4.2:7318913-7318932 None:intergenic 50.0%
GGTTGGAAACGAAAACCAGG+AGG + chr4.2:7318588-7318607 None:intergenic 50.0%
TACTGACCTGGCAAATCCCA+AGG + chr4.2:7318711-7318730 None:intergenic 50.0%
! ACCTCAGGAATGATGGAAGC+AGG + chr4.2:7318669-7318688 None:intergenic 50.0%
! AGGAATGATGGAAGCAGGCA+AGG + chr4.2:7318664-7318683 None:intergenic 50.0%
! GAATGATGGAAGCAGGCAAG+GGG + chr4.2:7318662-7318681 None:intergenic 50.0%
! GGAATGATGGAAGCAGGCAA+GGG + chr4.2:7318663-7318682 None:intergenic 50.0%
!!! GAGGCACTTTTTCAGCTCCA+AGG - chr4.2:7319184-7319203 MS.gene063281:intron 50.0%
GCCTGCTTCCATCATTCCTG+AGG - chr4.2:7318665-7318684 MS.gene063281:intron 55.0%
GGAGTGAGTAGATTGCCTCC+TGG - chr4.2:7318570-7318589 MS.gene063281:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 7318543 7319789 7318543 ID=MS.gene063281
chr4.2 mRNA 7318543 7319789 7318543 ID=MS.gene063281.t1;Parent=MS.gene063281
chr4.2 exon 7319609 7319789 7319609 ID=MS.gene063281.t1.exon1;Parent=MS.gene063281.t1
chr4.2 CDS 7319609 7319789 7319609 ID=cds.MS.gene063281.t1;Parent=MS.gene063281.t1
chr4.2 exon 7318899 7319167 7318899 ID=MS.gene063281.t1.exon2;Parent=MS.gene063281.t1
chr4.2 CDS 7318899 7319167 7318899 ID=cds.MS.gene063281.t1;Parent=MS.gene063281.t1
chr4.2 exon 7318543 7318674 7318543 ID=MS.gene063281.t1.exon3;Parent=MS.gene063281.t1
chr4.2 CDS 7318543 7318674 7318543 ID=cds.MS.gene063281.t1;Parent=MS.gene063281.t1
Gene Sequence

>MS.gene063281

ATGGATAAGCTGAATTTTATTAAAAATGGAGTGAGTAGATTGCCTCCTGGTTTTCGTTTCCAACCAACAGATGAAGAGCTTGTGTTTAATTATTTGAAATGTAAAATCTTCTCATGCCCCTTGCCTGCTTCCATCATTCCTGAGGTCAATGTTTGCAAGTATGATCCTTGGGATTTGCCAGGTCAGTAACTAATAACAAATTAATACTACACCCGGGTCTAACTCATTTTCACAAAACTGATTGGTAAGATGAAAAGTGTTACAATTTGTAAAAAAAATCAACGTTGGAGTTGAACTTTTCTAAAAAAAAATTTATGGTAGCCAGGATTTGAATTCCAGACCTTGCATATATTATACATTGTCCCTACCAACTGATCTAAGCTCACGAGGACGAACTTTTTCTAATATATACACATAACATATTGTTCCTTTTTTACACTAAATAATTATATAAAATAAAAGAATCATGCATATATTCGTAATGTACAAAATTACTAACTTAAATCTTATTAACTAGTTTTGGTTTTCATTGTAATAATGCTATATATGATAGCCATTAACAAATAATAAAGGAGAAAAATATTAAGTGATTAACATTGTTTTGTTTGATTGGTATGTATAGGAGGTTGTGATGAACAAGAGAGGCACTTTTTCAGCTCCAAGGAAGCAAAGTATAGAAATAGTAATCGGATGAGTAGAACAACAAAATGTGGATATTGGAAGGCAACAGGGTCAGACAAAAAAATTTCATCTTCAACTTGTAATGGCATTGTAGGGCTAAGAAAAACTTTGGTTTTCTATGAAGGGAAATCCCCAAATGGGTCTAGAACTGATTGGATCTTGCATGAATATCGCCTCATCAATGTGGAAACTACTAACAACTCAACCCAGGTAATTACTTACGCATTTGTAAGAGTTTGAAATTATAACTTTAAGCAACGGAATTCAAATTATTTCAGAAATAGTTGTAAAATAGTCGTTTTAATCAATAATAATTTTTCTCTTTCTCGATATTTTTATAAAAAAAATTATATATGTATGTATGTGAAAATAGATCATTATTGAAATTGCAAATATATTTATTTAATATAATTTAACTTTTTTTGGGTTGGCAGAACTATGGAAATGAGATAGGAGAATGGGTTCTGTGTCGGTTATCTGTAAGGAAAAGAAGTGGTATAGAATATGGAAGTACTAGCACTCATAATGCTCCTCCTAATTCGAGATTAATGTTTGATTTTATGATG
Protein sequence

>MS.gene063281.t1

MDKLNFIKNGVSRLPPGFRFQPTDEELVFNYLKCKIFSCPLPASIIPEVNVCKYDPWDLPGGCDEQERHFFSSKEAKYRNSNRMSRTTKCGYWKATGSDKKISSSTCNGIVGLRKTLVFYEGKSPNGSRTDWILHEYRLINVETTNNSTQNYGNEIGEWVLCRLSVRKRSGIEYGSTSTHNAPPNSRLMFDFMM