AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055982

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055982.t1 MTR_7g093430 95.593 295 11 1 1 293 1 295 0.0 577
MS.gene055982.t1 MTR_1g054285 68.841 276 76 6 1 273 1 269 9.50e-117 338
MS.gene055982.t1 MTR_2g061030 80.263 152 20 2 135 283 181 325 2.41e-77 239
MS.gene055982.t1 MTR_4g100550 64.362 188 57 2 86 272 57 235 1.96e-73 227
MS.gene055982.t1 MTR_5g013010 62.051 195 66 4 86 279 71 258 5.14e-70 219
MS.gene055982.t1 MTR_4g097600 77.600 125 26 1 148 270 115 239 1.84e-65 206
MS.gene055982.t1 MTR_8g006705 65.341 176 48 3 104 269 86 258 3.54e-65 206
MS.gene055982.t1 MTR_5g014890 67.626 139 45 0 149 287 114 252 1.89e-64 204
MS.gene055982.t1 MTR_1g017090 62.590 139 50 1 157 293 129 267 1.55e-55 181
MS.gene055982.t1 MTR_4g084750 65.323 124 36 2 153 269 59 182 3.12e-48 159
MS.gene055982.t1 MTR_3g103590 67.939 131 40 2 149 278 136 265 8.16e-48 162
MS.gene055982.t1 MTR_2g038625 56.618 136 55 2 136 270 63 195 2.21e-40 140
MS.gene055982.t1 MTR_2g038580 56.618 136 55 2 136 270 63 195 2.21e-40 140
MS.gene055982.t1 MTR_4g126900 58.772 114 43 1 160 269 90 203 1.41e-35 127
MS.gene055982.t1 MTR_5g013010 54.839 124 49 3 86 209 71 187 1.44e-29 111
MS.gene055982.t1 MTR_6g007647 40.146 137 80 1 155 291 30 164 1.58e-19 85.9
MS.gene055982.t1 MTR_7g010020 44.737 114 59 1 139 248 61 174 1.76e-19 86.3
MS.gene055982.t1 MTR_1g061660 44.330 97 54 0 154 250 55 151 2.40e-19 85.1
MS.gene055982.t1 MTR_6g007647 40.146 137 80 1 155 291 64 198 3.42e-19 85.9
MS.gene055982.t1 MTR_5g039000 45.283 106 54 1 150 251 69 174 3.08e-18 83.2
MS.gene055982.t1 MTR_4g107650 48.077 104 52 1 144 245 79 182 5.11e-18 83.2
MS.gene055982.t1 MTR_8g468210 41.085 129 69 3 130 251 46 174 5.68e-18 82.4
MS.gene055982.t1 MTR_6g011610 39.726 146 77 3 110 244 44 189 2.79e-17 80.1
MS.gene055982.t1 MTR_5g038280 47.872 94 42 1 158 244 87 180 4.30e-17 80.5
MS.gene055982.t1 MTR_7g103340 41.935 93 54 0 153 245 58 150 6.43e-17 78.6
MS.gene055982.t1 MTR_6g011610 45.946 111 51 2 143 244 60 170 8.84e-17 78.6
MS.gene055982.t1 MTR_3g080100 45.283 106 49 2 149 245 9 114 1.45e-16 77.0
MS.gene055982.t1 MTR_3g080100 45.283 106 49 2 149 245 48 153 2.45e-16 77.4
MS.gene055982.t1 MTR_8g469430 45.745 94 44 1 158 244 89 182 4.89e-16 77.0
MS.gene055982.t1 MTR_8g089895 43.750 112 53 2 141 245 40 148 2.60e-15 75.1
MS.gene055982.t1 MTR_3g086790 35.294 170 89 4 119 279 33 190 5.14e-15 74.3
MS.gene055982.t1 MTR_8g026960 42.683 82 47 0 162 243 38 119 5.10e-12 64.7
MS.gene055982.t1 MTR_3g092150 41.935 93 47 1 161 246 41 133 7.87e-12 64.3
MS.gene055982.t1 MTR_5g029320 30.769 130 89 1 125 254 60 188 3.78e-11 63.9
MS.gene055982.t1 MTR_2g101720 35.246 122 60 1 161 282 145 247 7.69e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055982.t1 AT5G06710 51.713 321 91 10 1 273 1 305 5.77e-87 263
MS.gene055982.t1 AT5G47370 55.217 230 86 7 52 271 22 244 8.19e-70 218
MS.gene055982.t1 AT4G37790 81.967 122 22 0 149 270 117 238 4.02e-69 216
MS.gene055982.t1 AT3G60390 50.562 267 83 8 42 269 18 274 7.03e-68 214
MS.gene055982.t1 AT2G44910 49.237 262 98 8 46 272 17 278 7.50e-67 211
MS.gene055982.t1 AT2G22800 77.049 122 28 0 149 270 104 225 3.91e-65 206
MS.gene055982.t1 AT4G16780 62.857 175 57 3 106 272 70 244 3.94e-65 206
MS.gene055982.t1 AT4G17460 54.393 239 80 9 52 271 21 249 1.17e-63 202
MS.gene055982.t1 AT2G01430 61.029 136 51 2 135 270 116 249 1.37e-47 160
MS.gene055982.t1 AT5G06710 42.412 257 84 10 1 209 1 241 8.96e-40 140
MS.gene055982.t1 AT1G70920 58.015 131 46 2 142 270 51 174 1.31e-39 137
MS.gene055982.t1 AT1G70920 58.015 131 46 2 142 270 21 144 1.43e-39 137
MS.gene055982.t1 AT2G01430 62.667 75 28 0 135 209 116 190 1.46e-23 96.3
MS.gene055982.t1 AT5G06710 36.087 230 83 10 1 182 1 214 1.24e-18 83.2
MS.gene055982.t1 AT5G06710 36.087 230 83 10 1 182 1 214 1.24e-18 83.2
MS.gene055982.t1 AT1G26960 39.744 156 81 5 143 291 57 206 2.50e-18 82.8
MS.gene055982.t1 AT1G69780 45.872 109 56 2 140 245 64 172 3.77e-18 83.2
MS.gene055982.t1 AT2G36610 42.157 102 51 1 153 246 66 167 3.64e-17 78.2
MS.gene055982.t1 AT5G03790 39.823 113 67 1 153 264 72 184 4.29e-17 79.0
MS.gene055982.t1 AT3G01220 42.857 119 56 2 144 250 65 183 6.12e-17 79.7
MS.gene055982.t1 AT5G15150 45.000 120 55 4 136 247 92 208 1.83e-16 78.6
MS.gene055982.t1 AT3G01470 46.739 92 49 0 158 249 68 159 7.63e-16 76.3
MS.gene055982.t1 AT2G22430 45.455 99 50 1 154 248 58 156 4.68e-15 74.3
MS.gene055982.t1 AT5G65310 42.857 98 49 1 155 245 69 166 6.37e-15 74.3
MS.gene055982.t1 AT5G65310 42.857 98 49 1 155 245 51 148 7.26e-15 73.9
MS.gene055982.t1 AT1G27045 56.061 66 29 0 158 223 25 90 1.73e-14 70.9
MS.gene055982.t1 AT1G27045 56.061 66 29 0 158 223 25 90 1.73e-14 70.9
MS.gene055982.t1 AT1G27045 56.061 66 29 0 158 223 17 82 1.98e-14 70.5
MS.gene055982.t1 AT1G27045 56.061 66 29 0 158 223 68 133 2.28e-14 71.2
MS.gene055982.t1 AT1G27045 45.098 102 48 2 158 252 68 168 3.75e-14 71.2
MS.gene055982.t1 AT2G18550 45.361 97 52 1 148 244 52 147 5.12e-14 70.1
MS.gene055982.t1 AT4G40060 42.857 98 52 1 154 247 55 152 6.57e-14 70.9
MS.gene055982.t1 AT5G03790 42.045 88 51 0 153 240 72 159 1.09e-13 68.6
MS.gene055982.t1 AT2G46680 41.758 91 53 0 153 243 27 117 1.18e-13 69.7
MS.gene055982.t1 AT2G46680 41.758 91 53 0 153 243 27 117 1.21e-13 69.7
MS.gene055982.t1 AT4G36740 41.837 98 56 1 147 244 45 141 4.77e-12 64.7
MS.gene055982.t1 AT4G36740 41.837 98 56 1 147 244 46 142 4.79e-12 64.7
MS.gene055982.t1 AT3G61890 42.169 83 48 0 161 243 33 115 1.51e-11 63.5

Find 79 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCTCGACTACTGTTTC+TGG 0.172775 7.1:+14159325 None:intergenic
CTTCGAATTCCCTGGCTTAA+TGG 0.240731 7.1:-14159724 MS.gene055982:CDS
ACCAGCGATGATGAAGAAAA+TGG 0.272695 7.1:-14159287 MS.gene055982:CDS
AATATGACGCTGCACTATTC+GGG 0.319466 7.1:+14159393 None:intergenic
CTCTAACAGAAGAAAATAAA+AGG 0.327202 7.1:-14158161 MS.gene055982:CDS
CCACGGACGCCAACCGGAAT+TGG 0.334110 7.1:+14159450 None:intergenic
TAATATGACGCTGCACTATT+CGG 0.334434 7.1:+14159392 None:intergenic
GAAGAAACTCAGACTCTCTA+AGG 0.373372 7.1:-14159255 MS.gene055982:CDS
TTGTTTAGTGGCAGTGGTTC+CGG 0.381277 7.1:+14158020 None:intergenic
CTCCACTTCTTCGAATTCCC+TGG 0.385540 7.1:-14159732 MS.gene055982:CDS
TATCGGATGTGAACCAATTC+CGG 0.385580 7.1:-14159463 MS.gene055982:CDS
CACTTCCGTTTGCTTTAACT+TGG 0.385691 7.1:+14158215 None:intergenic
GTCCACGTCAAGTAGAAGTT+TGG 0.395922 7.1:-14158415 MS.gene055982:CDS
AATCGAGATGGTTTGTTTAG+TGG 0.400673 7.1:+14158008 None:intergenic
TCATTATTGGCGGTGCCCAC+CGG 0.402169 7.1:+14157981 None:intergenic
ATGGAGCTGGCTTTGAGCTT+AGG 0.426776 7.1:-14159937 MS.gene055982:CDS
TATCCTCCACGGACGCCAAC+CGG 0.430609 7.1:+14159444 None:intergenic
CCAATTCCGGTTGGCGTCCG+TGG 0.435135 7.1:-14159450 MS.gene055982:CDS
CTATGTGTCCTTCTTGTGAA+AGG 0.437758 7.1:-14158059 MS.gene055982:CDS
GAGTCTGAGTTTCTTCCTTG+TGG 0.443252 7.1:+14159262 None:intergenic
AGAAAATAAAAGGTTACAAA+AGG 0.465210 7.1:-14158151 MS.gene055982:CDS
GATGGTTTGTTTAGTGGCAG+TGG 0.466617 7.1:+14158014 None:intergenic
AGTTCAATCACCGATGGAGC+TGG 0.469281 7.1:-14159950 None:intergenic
TTCGAAGAAGTGGAGAAGGC+TGG 0.476464 7.1:+14159740 None:intergenic
GTGGAGAAGGCTGGGAGTGA+AGG 0.477756 7.1:+14159749 None:intergenic
CACATAGTGAGAGTGGTAGC+TGG 0.479169 7.1:+14158075 None:intergenic
CAGAAACAGTAGTCGAGAAG+AGG 0.481552 7.1:-14159324 MS.gene055982:CDS
GGCTGCAGTTGGTGTGGAAC+CGG 0.481908 7.1:-14159492 MS.gene055982:intron
GAGTGAAGGACCGGTGTTGA+AGG 0.484612 7.1:+14159763 None:intergenic
GGCAGTGGTTCCGGTGGTGT+TGG 0.486933 7.1:+14158029 None:intergenic
TTTACTTGCACCATTAAGCC+AGG 0.488537 7.1:+14159714 None:intergenic
GGAAGAAGATTGAGCTGAAT+GGG 0.496713 7.1:+14159784 None:intergenic
CAAGTTAAAGCAAACGGAAG+TGG 0.499846 7.1:-14158214 MS.gene055982:CDS
AGTGGTTCCGGTGGTGTTGG+TGG 0.508654 7.1:+14158032 None:intergenic
CCAGCGATGATGAAGAAAAT+GGG 0.527273 7.1:-14159286 MS.gene055982:CDS
AGGAAGAAGATTGAGCTGAA+TGG 0.527689 7.1:+14159783 None:intergenic
AGAACACACCACTCTCAATC+CGG 0.532530 7.1:-14159201 MS.gene055982:intron
CAGGACCAAGTTAAAGCAAA+CGG 0.533115 7.1:-14158220 MS.gene055982:CDS
TATGTGTCCTTCTTGTGAAA+GGG 0.534150 7.1:-14158058 MS.gene055982:CDS
CAATCTTCTTCCTTCAACAC+CGG 0.539071 7.1:-14159773 MS.gene055982:CDS
GCAGAAACAGAAACTTGCTC+TGG 0.539316 7.1:-14158456 MS.gene055982:intron
AGAACCGTTGTCATTATTGG+CGG 0.539567 7.1:+14157971 None:intergenic
AAGCTCAAAGCCAGCTCCAT+CGG 0.539731 7.1:+14159940 None:intergenic
TCGAAGAAGTGGAGAAGGCT+GGG 0.542272 7.1:+14159741 None:intergenic
AGCCAGGGAATTCGAAGAAG+TGG 0.543327 7.1:+14159730 None:intergenic
GAAGGCTGGGAGTGAAGGAC+CGG 0.549545 7.1:+14159754 None:intergenic
GTGGCGACCCTTTCACAAGA+AGG 0.556254 7.1:+14158051 None:intergenic
GCTAAACCGTGTTCTTCAAG+TGG 0.571158 7.1:+14159847 None:intergenic
AGAAACAGTAGTCGAGAAGA+GGG 0.577673 7.1:-14159323 MS.gene055982:CDS
CCCACCGGTGGTAATCGAGA+TGG 0.582759 7.1:+14157996 None:intergenic
AGGGTCGCCACCAACACCAC+CGG 0.588362 7.1:-14158039 MS.gene055982:CDS
GCTGGAAGTTGCATGTAGAA+TGG 0.591856 7.1:+14158093 None:intergenic
ACCATCTCGATTACCACCGG+TGG 0.592762 7.1:-14157997 MS.gene055982:CDS
GGAATTCGAAGAAGTGGAGA+AGG 0.592815 7.1:+14159736 None:intergenic
AGAAGATTGAGCTGAATGGG+TGG 0.595515 7.1:+14159787 None:intergenic
TTCACATCCGATACTCTCAC+CGG 0.595525 7.1:+14159473 None:intergenic
AGAAGGACACATAGTGAGAG+TGG 0.600200 7.1:+14158068 None:intergenic
TGCAGCGTCATATTATCAGA+TGG 0.603249 7.1:-14159384 MS.gene055982:CDS
TATTATTACCGGATTGAGAG+TGG 0.604923 7.1:+14159193 None:intergenic
AACCAAACTTCTACTTGACG+TGG 0.605331 7.1:+14158413 None:intergenic
TTATTGGCGGTGCCCACCGG+TGG 0.607951 7.1:+14157984 None:intergenic
GTTTACGGCTGCAGTTGGTG+TGG 0.608602 7.1:-14159498 MS.gene055982:intron
CAGTAGTCGAGAAGAGGGTG+CGG 0.609350 7.1:-14159318 MS.gene055982:CDS
GGTTTCAGAATAGAAGAGCA+AGG 0.612001 7.1:-14158394 MS.gene055982:intron
ATGAAGAAAATGGGTCCACA+AGG 0.617090 7.1:-14159277 MS.gene055982:CDS
GAGCTGAATGGGTGGATCTG+AGG 0.625502 7.1:+14159795 None:intergenic
TGTGGAACCGGTGAGAGTAT+CGG 0.632478 7.1:-14159480 MS.gene055982:CDS
ATTCCGGTTGGCGTCCGTGG+AGG 0.636105 7.1:-14159447 MS.gene055982:CDS
ATATGACGCTGCACTATTCG+GGG 0.636746 7.1:+14159394 None:intergenic
CCATCTCGATTACCACCGGT+GGG 0.643789 7.1:-14157996 MS.gene055982:CDS
TGCATACCACTTGAAGAACA+CGG 0.644956 7.1:-14159853 MS.gene055982:CDS
CAAACCATCTCGATTACCAC+CGG 0.647502 7.1:-14158000 MS.gene055982:CDS
TGAAACTGCAGCTCCCTCGT+CGG 0.652204 7.1:+14159418 None:intergenic
GGATGTGAACCAATTCCGGT+TGG 0.657900 7.1:-14159459 MS.gene055982:CDS
TTTAGTGGCAGTGGTTCCGG+TGG 0.663174 7.1:+14158023 None:intergenic
TTACTTGCACCATTAAGCCA+GGG 0.674390 7.1:+14159715 None:intergenic
CTCGTCGGTAGTATCCTCCA+CGG 0.686078 7.1:+14159433 None:intergenic
CGTGGAGGATACTACCGACG+AGG 0.692188 7.1:-14159432 MS.gene055982:CDS
GTGGAGGATACTACCGACGA+GGG 0.757148 7.1:-14159431 MS.gene055982:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTTTTCATTTTTTTATT+AGG + chr7.1:14159675-14159694 None:intergenic 10.0%
!!! GAAATAAATATTGTTATTTT+AGG - chr7.1:14159410-14159429 MS.gene055982:CDS 10.0%
!! AGTATAGTTACTTAAAAAAT+AGG + chr7.1:14158392-14158411 None:intergenic 15.0%
!! GTATAGTTACTTAAAAAATA+GGG + chr7.1:14158391-14158410 None:intergenic 15.0%
!! TAACTAAATAATCATTTAAC+TGG + chr7.1:14159058-14159077 None:intergenic 15.0%
!! TATAGTTACTTAAAAAATAG+GGG + chr7.1:14158390-14158409 None:intergenic 15.0%
!! AAATGAAAAACATAATGTAC+AGG - chr7.1:14159682-14159701 MS.gene055982:intron 20.0%
!! AGAAAATAAAAGGTTACAAA+AGG - chr7.1:14159770-14159789 MS.gene055982:CDS 20.0%
!! TACTTATATGTGTATGTTTA+CGG - chr7.1:14158408-14158427 MS.gene055982:CDS 20.0%
!! TATAATATAAAAAATCGCAG+AGG - chr7.1:14159250-14159269 MS.gene055982:CDS 20.0%
!!! AAATAATTTGTGATAAGTGT+GGG + chr7.1:14158942-14158961 None:intergenic 20.0%
!!! ATCACAAATTATTTCTCTTT+TGG - chr7.1:14158948-14158967 MS.gene055982:intron 20.0%
!!! ATCCAAAATTTTTGAATAGT+GGG + chr7.1:14159296-14159315 None:intergenic 20.0%
!!! TGTTTCTAAAAATTTTGTGT+AGG + chr7.1:14158862-14158881 None:intergenic 20.0%
! AAATGAAATGTTGTTAGAGA+GGG + chr7.1:14158757-14158776 None:intergenic 25.0%
! AGATATATGATGATATGTGT+GGG + chr7.1:14158974-14158993 None:intergenic 25.0%
! CTCTAACAGAAGAAAATAAA+AGG - chr7.1:14159760-14159779 MS.gene055982:CDS 25.0%
!! ATGGATTTTTCTATCATGAA+TGG - chr7.1:14158556-14158575 MS.gene055982:intron 25.0%
!! ATTATCTTTTCTGTGTTATG+AGG - chr7.1:14159563-14159582 MS.gene055982:intron 25.0%
!! GAAATAATTTGTGATAAGTG+TGG + chr7.1:14158943-14158962 None:intergenic 25.0%
!! GATCCAAAATTTTTGAATAG+TGG + chr7.1:14159297-14159316 None:intergenic 25.0%
!! GATTTTTATCATGCAATACA+TGG - chr7.1:14158808-14158827 MS.gene055982:intron 25.0%
!! GCAGAGGATAATTTTATATA+TGG - chr7.1:14159266-14159285 MS.gene055982:CDS 25.0%
!! TCAAACAAAGAGAATGTTTT+CGG + chr7.1:14158017-14158036 None:intergenic 25.0%
!! TCCAAAATTTTTGAATAGTG+GGG + chr7.1:14159295-14159314 None:intergenic 25.0%
!! TTTTCTATCATGAATGGTAA+TGG - chr7.1:14158562-14158581 MS.gene055982:intron 25.0%
!! TTTTGTTGGGTAATTTTGTA+GGG + chr7.1:14158043-14158062 None:intergenic 25.0%
ATCAAATGTTAAATCGTGAG+AGG - chr7.1:14159143-14159162 MS.gene055982:intron 30.0%
CAAATGAAATGTTGTTAGAG+AGG + chr7.1:14158758-14158777 None:intergenic 30.0%
GAGATATATGATGATATGTG+TGG + chr7.1:14158975-14158994 None:intergenic 30.0%
! CCAAAATTTTTGAATAGTGG+GGG + chr7.1:14159294-14159313 None:intergenic 30.0%
! TTTTATCATGCAATACATGG+AGG - chr7.1:14158811-14158830 MS.gene055982:intron 30.0%
!! GTTTTGTTGGGTAATTTTGT+AGG + chr7.1:14158044-14158063 None:intergenic 30.0%
!!! GGAATCACTTTTTTGGTTTA+AGG + chr7.1:14158108-14158127 None:intergenic 30.0%
ATAGAAGAGCAAGGTAACTA+AGG - chr7.1:14159536-14159555 MS.gene055982:intron 35.0%
ATCAAATGTGAAATCGTGAG+AGG - chr7.1:14159029-14159048 MS.gene055982:intron 35.0%
TAATATGACGCTGCACTATT+CGG + chr7.1:14158532-14158551 None:intergenic 35.0%
TAGAAGAGCAAGGTAACTAA+GGG - chr7.1:14159537-14159556 MS.gene055982:intron 35.0%
TATGTGTCCTTCTTGTGAAA+GGG - chr7.1:14159863-14159882 MS.gene055982:CDS 35.0%
TATTATTACCGGATTGAGAG+TGG + chr7.1:14158731-14158750 None:intergenic 35.0%
TTTGTCTATACGAAACTACG+AGG + chr7.1:14158246-14158265 None:intergenic 35.0%
! CCCCCACTATTCAAAAATTT+TGG - chr7.1:14159291-14159310 MS.gene055982:CDS 35.0%
!! AATCGAGATGGTTTGTTTAG+TGG + chr7.1:14159916-14159935 None:intergenic 35.0%
!! AGAGAGGGTGTTATTATTAC+CGG + chr7.1:14158742-14158761 None:intergenic 35.0%
!! AGTTTCTGTTTCTGCAGATT+TGG + chr7.1:14159460-14159479 None:intergenic 35.0%
!! GTTTCTGTTTCTGCAGATTT+GGG + chr7.1:14159459-14159478 None:intergenic 35.0%
!! TGGTATGCAGAAAGTTTTGT+TGG + chr7.1:14158057-14158076 None:intergenic 35.0%
!!! GATCTGAGGAATCACTTTTT+TGG + chr7.1:14158115-14158134 None:intergenic 35.0%
!!! GGTATGCAGAAAGTTTTGTT+GGG + chr7.1:14158056-14158075 None:intergenic 35.0%
AACCAAACTTCTACTTGACG+TGG + chr7.1:14159511-14159530 None:intergenic 40.0%
AATATGACGCTGCACTATTC+GGG + chr7.1:14158531-14158550 None:intergenic 40.0%
ACCAGCGATGATGAAGAAAA+TGG - chr7.1:14158634-14158653 MS.gene055982:intron 40.0%
AGAAACAGTAGTCGAGAAGA+GGG - chr7.1:14158598-14158617 MS.gene055982:intron 40.0%
AGGAAGAAGATTGAGCTGAA+TGG + chr7.1:14158141-14158160 None:intergenic 40.0%
ATGAAGAAAATGGGTCCACA+AGG - chr7.1:14158644-14158663 MS.gene055982:intron 40.0%
ATGGAGGAAAAACCTTCAAG+TGG - chr7.1:14158827-14158846 MS.gene055982:intron 40.0%
CAAGTTAAAGCAAACGGAAG+TGG - chr7.1:14159707-14159726 MS.gene055982:intron 40.0%
CAATCTTCTTCCTTCAACAC+CGG - chr7.1:14158148-14158167 MS.gene055982:CDS 40.0%
CACTTCCGTTTGCTTTAACT+TGG + chr7.1:14159709-14159728 None:intergenic 40.0%
CAGGACCAAGTTAAAGCAAA+CGG - chr7.1:14159701-14159720 MS.gene055982:intron 40.0%
CCAGCGATGATGAAGAAAAT+GGG - chr7.1:14158635-14158654 MS.gene055982:intron 40.0%
CTATGTGTCCTTCTTGTGAA+AGG - chr7.1:14159862-14159881 MS.gene055982:CDS 40.0%
GAAACTACGAGGAAACAAGA+GGG + chr7.1:14158235-14158254 None:intergenic 40.0%
GAAGAAACTCAGACTCTCTA+AGG - chr7.1:14158666-14158685 MS.gene055982:intron 40.0%
GGAAGAAGATTGAGCTGAAT+GGG + chr7.1:14158140-14158159 None:intergenic 40.0%
GGTTTCAGAATAGAAGAGCA+AGG - chr7.1:14159527-14159546 MS.gene055982:intron 40.0%
TATCGGATGTGAACCAATTC+CGG - chr7.1:14158458-14158477 MS.gene055982:intron 40.0%
TGCAGCGTCATATTATCAGA+TGG - chr7.1:14158537-14158556 MS.gene055982:intron 40.0%
TGCATACCACTTGAAGAACA+CGG - chr7.1:14158068-14158087 MS.gene055982:CDS 40.0%
TGGAGGAAAAACCTTCAAGT+GGG - chr7.1:14158828-14158847 MS.gene055982:intron 40.0%
TGTGATAAGTGTGGGTCATA+TGG + chr7.1:14158934-14158953 None:intergenic 40.0%
TTACTTGCACCATTAAGCCA+GGG + chr7.1:14158209-14158228 None:intergenic 40.0%
TTTACTTGCACCATTAAGCC+AGG + chr7.1:14158210-14158229 None:intergenic 40.0%
AGAACACACCACTCTCAATC+CGG - chr7.1:14158720-14158739 MS.gene055982:intron 45.0%
AGAAGATTGAGCTGAATGGG+TGG + chr7.1:14158137-14158156 None:intergenic 45.0%
AGAAGGACACATAGTGAGAG+TGG + chr7.1:14159856-14159875 None:intergenic 45.0%
ATATGACGCTGCACTATTCG+GGG + chr7.1:14158530-14158549 None:intergenic 45.0%
CAAACCATCTCGATTACCAC+CGG - chr7.1:14159921-14159940 MS.gene055982:CDS 45.0%
CAGAAACAGTAGTCGAGAAG+AGG - chr7.1:14158597-14158616 MS.gene055982:intron 45.0%
CGAAACTACGAGGAAACAAG+AGG + chr7.1:14158236-14158255 None:intergenic 45.0%
CTCTTCTCGACTACTGTTTC+TGG + chr7.1:14158599-14158618 None:intergenic 45.0%
CTTCGAATTCCCTGGCTTAA+TGG - chr7.1:14158197-14158216 MS.gene055982:CDS 45.0%
GAGGAAAAACCTTCAAGTGG+GGG - chr7.1:14158830-14158849 MS.gene055982:intron 45.0%
GAGTCTGAGTTTCTTCCTTG+TGG + chr7.1:14158662-14158681 None:intergenic 45.0%
GCTAAACCGTGTTCTTCAAG+TGG + chr7.1:14158077-14158096 None:intergenic 45.0%
GCTGGAAGTTGCATGTAGAA+TGG + chr7.1:14159831-14159850 None:intergenic 45.0%
GGAATTCGAAGAAGTGGAGA+AGG + chr7.1:14158188-14158207 None:intergenic 45.0%
GGAGGAAAAACCTTCAAGTG+GGG - chr7.1:14158829-14158848 MS.gene055982:intron 45.0%
GTCCACGTCAAGTAGAAGTT+TGG - chr7.1:14159506-14159525 MS.gene055982:intron 45.0%
TGTATGTTTACGGCTGCAGT+TGG - chr7.1:14158418-14158437 MS.gene055982:CDS 45.0%
TTCACATCCGATACTCTCAC+CGG + chr7.1:14158451-14158470 None:intergenic 45.0%
TTGTTTAGTGGCAGTGGTTC+CGG + chr7.1:14159904-14159923 None:intergenic 45.0%
! CCCATTTTCTTCATCATCGC+TGG + chr7.1:14158638-14158657 None:intergenic 45.0%
! GCAGAAACAGAAACTTGCTC+TGG - chr7.1:14159465-14159484 MS.gene055982:CDS 45.0%
!! GATGGTTTGTTTAGTGGCAG+TGG + chr7.1:14159910-14159929 None:intergenic 45.0%
!! AAATAAACAAAATAAATATT+TGG + chr7.1:14159609-14159628 None:intergenic 5.0%
AGCCAGGGAATTCGAAGAAG+TGG + chr7.1:14158194-14158213 None:intergenic 50.0%
CACATAGTGAGAGTGGTAGC+TGG + chr7.1:14159849-14159868 None:intergenic 50.0%
CTCCACTTCTTCGAATTCCC+TGG - chr7.1:14158189-14158208 MS.gene055982:CDS 50.0%
GGATGTGAACCAATTCCGGT+TGG - chr7.1:14158462-14158481 MS.gene055982:intron 50.0%
TCGAAGAAGTGGAGAAGGCT+GGG + chr7.1:14158183-14158202 None:intergenic 50.0%
TTCGAAGAAGTGGAGAAGGC+TGG + chr7.1:14158184-14158203 None:intergenic 50.0%
! TGTGGAACCGGTGAGAGTAT+CGG - chr7.1:14158441-14158460 MS.gene055982:CDS 50.0%
!! ATGGAGCTGGCTTTGAGCTT+AGG - chr7.1:14157984-14158003 MS.gene055982:CDS 50.0%
ACCATCTCGATTACCACCGG+TGG - chr7.1:14159924-14159943 MS.gene055982:CDS 55.0%
CAGTAGTCGAGAAGAGGGTG+CGG - chr7.1:14158603-14158622 MS.gene055982:intron 55.0%
CCATCTCGATTACCACCGGT+GGG - chr7.1:14159925-14159944 MS.gene055982:CDS 55.0%
CTCGTCGGTAGTATCCTCCA+CGG + chr7.1:14158491-14158510 None:intergenic 55.0%
GAGCTGAATGGGTGGATCTG+AGG + chr7.1:14158129-14158148 None:intergenic 55.0%
GTGGAGGATACTACCGACGA+GGG - chr7.1:14158490-14158509 MS.gene055982:intron 55.0%
GTGGCGACCCTTTCACAAGA+AGG + chr7.1:14159873-14159892 None:intergenic 55.0%
TGAAACTGCAGCTCCCTCGT+CGG + chr7.1:14158506-14158525 None:intergenic 55.0%
TTTAGTGGCAGTGGTTCCGG+TGG + chr7.1:14159901-14159920 None:intergenic 55.0%
! GAGTGAAGGACCGGTGTTGA+AGG + chr7.1:14158161-14158180 None:intergenic 55.0%
! GTTTACGGCTGCAGTTGGTG+TGG - chr7.1:14158423-14158442 MS.gene055982:CDS 55.0%
AGGCACAAGCCCCCACTTGA+AGG + chr7.1:14158842-14158861 None:intergenic 60.0%
CCCACCGGTGGTAATCGAGA+TGG + chr7.1:14159928-14159947 None:intergenic 60.0%
CGTGGAGGATACTACCGACG+AGG - chr7.1:14158489-14158508 MS.gene055982:intron 60.0%
GAAGGCTGGGAGTGAAGGAC+CGG + chr7.1:14158170-14158189 None:intergenic 60.0%
GTGGAGAAGGCTGGGAGTGA+AGG + chr7.1:14158175-14158194 None:intergenic 60.0%
TATCCTCCACGGACGCCAAC+CGG + chr7.1:14158480-14158499 None:intergenic 60.0%
! AGTGGTTCCGGTGGTGTTGG+TGG + chr7.1:14159892-14159911 None:intergenic 60.0%
! GGCTGCAGTTGGTGTGGAAC+CGG - chr7.1:14158429-14158448 MS.gene055982:CDS 60.0%
AGGGTCGCCACCAACACCAC+CGG - chr7.1:14159882-14159901 MS.gene055982:CDS 65.0%
ATTCCGGTTGGCGTCCGTGG+AGG - chr7.1:14158474-14158493 MS.gene055982:intron 65.0%
CCAATTCCGGTTGGCGTCCG+TGG - chr7.1:14158471-14158490 MS.gene055982:intron 65.0%
CCACGGACGCCAACCGGAAT+TGG + chr7.1:14158474-14158493 None:intergenic 65.0%
GGCAGTGGTTCCGGTGGTGT+TGG + chr7.1:14159895-14159914 None:intergenic 65.0%
TTATTGGCGGTGCCCACCGG+TGG + chr7.1:14159940-14159959 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 14157984 14159959 14157984 ID=MS.gene055982
chr7.1 mRNA 14157984 14159959 14157984 ID=MS.gene055982.t1;Parent=MS.gene055982
chr7.1 exon 14159719 14159959 14159719 ID=MS.gene055982.t1.exon1;Parent=MS.gene055982.t1
chr7.1 CDS 14159719 14159959 14159719 ID=cds.MS.gene055982.t1;Parent=MS.gene055982.t1
chr7.1 exon 14159202 14159506 14159202 ID=MS.gene055982.t1.exon2;Parent=MS.gene055982.t1
chr7.1 CDS 14159202 14159506 14159202 ID=cds.MS.gene055982.t1;Parent=MS.gene055982.t1
chr7.1 exon 14158395 14158474 14158395 ID=MS.gene055982.t1.exon3;Parent=MS.gene055982.t1
chr7.1 CDS 14158395 14158474 14158395 ID=cds.MS.gene055982.t1;Parent=MS.gene055982.t1
chr7.1 exon 14157984 14158239 14157984 ID=MS.gene055982.t1.exon4;Parent=MS.gene055982.t1
chr7.1 CDS 14157984 14158239 14157984 ID=cds.MS.gene055982.t1;Parent=MS.gene055982.t1
Gene Sequence

>MS.gene055982

ATGGAGCTGGCTTTGAGCTTAGGCGACACACCGAAAACATTCTCTTTGTTTGAAAACCCTACAAAATTACCCAACAAAACTTTCTGCATACCACTTGAAGAACACGGTTTAGCTGAAAAATCCTTAAACCAAAAAAGTGATTCCTCAGATCCACCCATTCAGCTCAATCTTCTTCCTTCAACACCGGTCCTTCACTCCCAGCCTTCTCCACTTCTTCGAATTCCCTGGCTTAATGGTGCAAGTAAACACCCTCTTGTTTCCTCGTAGTTTCGTATAGACAAATGTTAATTAATTATTTGTTGCTAATCGAGTTTACGAAGAGTTTGATATTGTAACATCACACGTATGAAGATAGTAGTAAAATGATCATTAATATCATTGTTATTGATAACAATTTTTTTGACCCCTATTTTTTAAGTAACTATACTTATATGTGTATGTTTACGGCTGCAGTTGGTGTGGAACCGGTGAGAGTATCGGATGTGAACCAATTCCGGTTGGCGTCCGTGGAGGATACTACCGACGAGGGAGCTGCAGTTTCATCCCCGAATAGTGCAGCGTCATATTATCAGATGGATTTTTCTATCATGAATGGTAATGGTGATGCTGCAGCCAGAAACAGTAGTCGAGAAGAGGGTGCGGATAGAAATACCAGCGATGATGAAGAAAATGGGTCCACAAGGAAGAAACTCAGACTCTCTAAGGAACAATCAGCTTTTCTTGAAGATAGCTTCAAAGAACACACCACTCTCAATCCGGTAATAATAACACCCTCTCTAACAACATTTCATTTGTTTCACTTTCTCTTTCTTATTTTAGTTAAAGATTTTTATCATGCAATACATGGAGGAAAAACCTTCAAGTGGGGGCTTGTGCCTACACAAAATTTTTAGAAACACTTTTTTTAGTAGAATAATACTATAATGTATCTATAGTTGACATTTTGACCATATGACCCACACTTATCACAAATTATTTCTCTTTTGGCCCACACATATCATCATATATCTCAAGTTCTTTCTTGATAATATTAATATTATCAAGAATCAAATGTGAAATCGTGAGAGGTGACCAGTTAAATGATTATTTAGTTATTTATATAGAAAAATATATTTTTATTATCTCAAATTCTTTCTTGATAATATGAATATTATCAAGAATCAAATGTTAAATCGTGAGAGGTGACCAGTTAAATGATTATTTAGTTATTTATATAGAAAAAGATATTTTTATTAATATTGAAAATGAGAAATCATTCAAAATTTATATAATATAAAAAATCGCAGAGGATAATTTTATATATGGCGCCCCCACTATTCAAAAATTTTGGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATATATATATATATTGTTTTTTTTAAGAAATAAATATTGTTATTTTAGGTATATCTCATTAATCATATATTACCCAAATCTGCAGAAACAGAAACTTGCTCTGGCAAAACAATTAAATCTTCGTCCACGTCAAGTAGAAGTTTGGTTTCAGAATAGAAGAGCAAGGTAACTAAGGGCACATTATCTTTTCTGTGTTATGAGGATATTATTTTTTGTCATAAACCAAATATTTATTTTGTTTATTTCTTCTATTAAAAAAATTGAAAAAATATATCTATTTAGTTTTTTCCTAATAAAAAAATGAAAAACATAATGTACAGGACCAAGTTAAAGCAAACGGAAGTGGATTGTGAGTACTTAAAAAGATGTTGTGAGACTCTAACAGAAGAAAATAAAAGGTTACAAAAGGAACTTCAAGAATTGAGAGCTTTGAAAACTTCTCAACCATTCTACATGCAACTTCCAGCTACCACTCTCACTATGTGTCCTTCTTGTGAAAGGGTCGCCACCAACACCACCGGAACCACTGCCACTAAACAAACCATCTCGATTACCACCGGTGGGCACCGCCAATAA
Protein sequence

>MS.gene055982.t1

MELALSLGDTPKTFSLFENPTKLPNKTFCIPLEEHGLAEKSLNQKSDSSDPPIQLNLLPSTPVLHSQPSPLLRIPWLNGAIGVEPVRVSDVNQFRLASVEDTTDEGAAVSSPNSAASYYQMDFSIMNGNGDAAARNSSREEGADRNTSDDEENGSTRKKLRLSKEQSAFLEDSFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENKRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTTGTTATKQTISITTGGHRQ