Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06353.t1 | XP_024635380.1 | 99.1 | 466 | 3 | 1 | 1 | 466 | 1 | 465 | 3.80E-256 | 893.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06353.t1 | Q38967 | 67.3 | 465 | 146 | 3 | 11 | 469 | 29 | 493 | 1.0e-185 | 651.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06353.t1 | G8A1P0 | 99.1 | 466 | 3 | 1 | 1 | 466 | 1 | 465 | 2.7e-256 | 893.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049264 | MS.gene06353 | 0.961222 | 1.88E-119 | -1.69E-46 |
MS.gene049378 | MS.gene06353 | 0.809158 | 2.17E-50 | -1.69E-46 |
MS.gene05216 | MS.gene06353 | 0.811144 | 8.11E-51 | -1.69E-46 |
MS.gene054826 | MS.gene06353 | 0.812898 | 3.36E-51 | -1.69E-46 |
MS.gene055827 | MS.gene06353 | 0.80078 | 1.23E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06353.t1 | MTR_3g096830 | 99.142 | 466 | 3 | 1 | 1 | 466 | 1 | 465 | 0.0 | 941 |
MS.gene06353.t1 | MTR_3g096800 | 71.581 | 468 | 130 | 2 | 4 | 469 | 11 | 477 | 0.0 | 701 |
MS.gene06353.t1 | MTR_8g094290 | 70.753 | 465 | 128 | 2 | 7 | 469 | 17 | 475 | 0.0 | 697 |
MS.gene06353.t1 | MTR_3g096840 | 69.697 | 462 | 138 | 1 | 7 | 466 | 19 | 480 | 0.0 | 682 |
MS.gene06353.t1 | MTR_3g088455 | 67.516 | 471 | 146 | 3 | 4 | 469 | 11 | 479 | 0.0 | 676 |
MS.gene06353.t1 | MTR_3g088475 | 66.949 | 472 | 148 | 4 | 4 | 469 | 11 | 480 | 0.0 | 661 |
MS.gene06353.t1 | MTR_4g073520 | 63.674 | 479 | 163 | 3 | 2 | 469 | 34 | 512 | 0.0 | 647 |
MS.gene06353.t1 | MTR_4g073520 | 63.674 | 479 | 163 | 3 | 2 | 469 | 34 | 512 | 0.0 | 646 |
MS.gene06353.t1 | MTR_1g029750 | 66.737 | 472 | 146 | 4 | 4 | 469 | 17 | 483 | 0.0 | 643 |
MS.gene06353.t1 | MTR_3g110660 | 56.652 | 466 | 195 | 4 | 7 | 465 | 13 | 478 | 0.0 | 544 |
MS.gene06353.t1 | MTR_1g007380 | 56.290 | 469 | 198 | 4 | 7 | 468 | 3 | 471 | 0.0 | 543 |
MS.gene06353.t1 | MTR_1g105980 | 56.236 | 457 | 193 | 4 | 16 | 465 | 11 | 467 | 0.0 | 533 |
MS.gene06353.t1 | MTR_3g088465 | 66.755 | 376 | 117 | 4 | 4 | 373 | 11 | 384 | 0.0 | 525 |
MS.gene06353.t1 | MTR_1g105990 | 57.143 | 455 | 185 | 5 | 16 | 460 | 10 | 464 | 0.0 | 518 |
MS.gene06353.t1 | MTR_1g106000 | 54.902 | 459 | 191 | 5 | 26 | 468 | 14 | 472 | 6.05e-180 | 512 |
MS.gene06353.t1 | MTR_1g105995 | 52.979 | 470 | 212 | 5 | 6 | 468 | 2 | 469 | 3.06e-179 | 510 |
MS.gene06353.t1 | MTR_3g461440 | 51.345 | 446 | 210 | 3 | 15 | 455 | 11 | 454 | 6.59e-166 | 476 |
MS.gene06353.t1 | MTR_1g007270 | 49.680 | 469 | 223 | 6 | 2 | 465 | 9 | 469 | 5.42e-165 | 474 |
MS.gene06353.t1 | MTR_3g461470 | 50.897 | 446 | 212 | 3 | 15 | 455 | 11 | 454 | 4.92e-163 | 469 |
MS.gene06353.t1 | MTR_3g110420 | 49.894 | 471 | 226 | 5 | 1 | 465 | 1 | 467 | 6.48e-161 | 464 |
MS.gene06353.t1 | MTR_1g007180 | 48.998 | 449 | 224 | 3 | 21 | 465 | 6 | 453 | 4.28e-160 | 461 |
MS.gene06353.t1 | MTR_5g096840 | 50.228 | 438 | 210 | 4 | 24 | 455 | 26 | 461 | 7.64e-160 | 461 |
MS.gene06353.t1 | MTR_2g031750 | 49.778 | 450 | 221 | 3 | 20 | 465 | 5 | 453 | 2.23e-158 | 456 |
MS.gene06353.t1 | MTR_3g461430 | 50.457 | 438 | 210 | 3 | 25 | 457 | 28 | 463 | 4.92e-158 | 458 |
MS.gene06353.t1 | MTR_3g061390 | 50.113 | 441 | 213 | 3 | 20 | 455 | 16 | 454 | 3.57e-157 | 454 |
MS.gene06353.t1 | MTR_1g007240 | 48.667 | 450 | 226 | 3 | 21 | 466 | 6 | 454 | 3.06e-155 | 449 |
MS.gene06353.t1 | MTR_3g461480 | 49.660 | 441 | 214 | 4 | 21 | 455 | 21 | 459 | 9.87e-151 | 437 |
MS.gene06353.t1 | MTR_3g110430 | 47.556 | 450 | 229 | 4 | 21 | 465 | 55 | 502 | 1.32e-140 | 413 |
MS.gene06353.t1 | MTR_3g110660 | 60.000 | 330 | 128 | 3 | 7 | 332 | 13 | 342 | 6.46e-137 | 399 |
MS.gene06353.t1 | MTR_5g096850 | 44.266 | 436 | 235 | 4 | 26 | 455 | 24 | 457 | 7.86e-132 | 389 |
MS.gene06353.t1 | MTR_2g031750 | 48.031 | 381 | 193 | 3 | 89 | 465 | 7 | 386 | 1.46e-124 | 368 |
MS.gene06353.t1 | MTR_3g461440 | 52.830 | 318 | 143 | 3 | 143 | 455 | 2 | 317 | 1.79e-119 | 352 |
MS.gene06353.t1 | MTR_5g017200 | 63.636 | 264 | 82 | 4 | 7 | 270 | 15 | 264 | 2.06e-107 | 320 |
MS.gene06353.t1 | MTR_3g110420 | 47.761 | 335 | 169 | 3 | 1 | 332 | 1 | 332 | 5.51e-107 | 321 |
MS.gene06353.t1 | MTR_1g007180 | 47.667 | 300 | 152 | 3 | 170 | 465 | 71 | 369 | 1.69e-95 | 293 |
MS.gene06353.t1 | MTR_6g022790 | 29.185 | 466 | 286 | 11 | 12 | 463 | 17 | 452 | 1.65e-50 | 178 |
MS.gene06353.t1 | MTR_1g007190 | 46.606 | 221 | 81 | 6 | 37 | 257 | 20 | 203 | 4.52e-49 | 167 |
MS.gene06353.t1 | MTR_2g101920 | 28.728 | 456 | 280 | 10 | 23 | 466 | 39 | 461 | 1.15e-45 | 165 |
MS.gene06353.t1 | MTR_8g080120 | 28.319 | 452 | 286 | 10 | 23 | 466 | 15 | 436 | 1.69e-45 | 164 |
MS.gene06353.t1 | MTR_4g103890 | 28.959 | 442 | 276 | 10 | 28 | 463 | 11 | 420 | 4.51e-45 | 163 |
MS.gene06353.t1 | MTR_1g070470 | 27.468 | 466 | 298 | 12 | 10 | 465 | 2 | 437 | 1.85e-43 | 159 |
MS.gene06353.t1 | MTR_3g005740 | 28.409 | 440 | 285 | 7 | 28 | 463 | 53 | 466 | 6.57e-43 | 158 |
MS.gene06353.t1 | MTR_7g038910 | 29.677 | 465 | 269 | 12 | 21 | 462 | 10 | 439 | 4.08e-41 | 152 |
MS.gene06353.t1 | MTR_5g054730 | 29.299 | 471 | 289 | 13 | 6 | 466 | 3 | 439 | 3.91e-39 | 147 |
MS.gene06353.t1 | MTR_6g023065 | 29.412 | 442 | 276 | 10 | 27 | 463 | 50 | 460 | 5.00e-39 | 147 |
MS.gene06353.t1 | MTR_6g022780 | 29.252 | 441 | 277 | 9 | 28 | 463 | 15 | 425 | 7.85e-39 | 146 |
MS.gene06353.t1 | MTR_7g038910 | 29.668 | 391 | 217 | 12 | 21 | 388 | 10 | 365 | 2.98e-38 | 144 |
MS.gene06353.t1 | MTR_7g038910 | 29.427 | 384 | 211 | 12 | 21 | 380 | 10 | 357 | 3.92e-38 | 143 |
MS.gene06353.t1 | MTR_6g023075 | 28.540 | 452 | 284 | 10 | 21 | 463 | 4 | 425 | 1.19e-37 | 142 |
MS.gene06353.t1 | MTR_2g096830 | 29.204 | 452 | 281 | 10 | 21 | 463 | 4 | 425 | 4.98e-36 | 138 |
MS.gene06353.t1 | MTR_3g085820 | 29.367 | 395 | 234 | 12 | 4 | 388 | 9 | 368 | 8.31e-36 | 137 |
MS.gene06353.t1 | MTR_1g093020 | 27.447 | 470 | 290 | 14 | 10 | 466 | 6 | 437 | 5.32e-35 | 135 |
MS.gene06353.t1 | MTR_1g093020 | 28.341 | 434 | 260 | 14 | 10 | 430 | 6 | 401 | 1.40e-34 | 134 |
MS.gene06353.t1 | MTR_4g055610 | 27.716 | 451 | 289 | 14 | 26 | 467 | 39 | 461 | 1.04e-33 | 132 |
MS.gene06353.t1 | MTR_1g093030 | 25.738 | 474 | 299 | 12 | 7 | 466 | 3 | 437 | 3.54e-32 | 127 |
MS.gene06353.t1 | MTR_2g096830 | 30.178 | 338 | 209 | 9 | 21 | 348 | 4 | 324 | 3.75e-32 | 125 |
MS.gene06353.t1 | MTR_0531s0020 | 29.143 | 350 | 220 | 8 | 3 | 342 | 21 | 352 | 6.15e-32 | 125 |
MS.gene06353.t1 | MTR_8g099320 | 25.210 | 476 | 312 | 14 | 10 | 468 | 2 | 450 | 1.76e-31 | 126 |
MS.gene06353.t1 | MTR_1g492640 | 26.862 | 443 | 277 | 17 | 38 | 466 | 70 | 479 | 3.43e-27 | 114 |
MS.gene06353.t1 | MTR_4g075750 | 24.580 | 476 | 303 | 14 | 16 | 464 | 55 | 501 | 5.44e-25 | 107 |
MS.gene06353.t1 | MTR_3g115090 | 25.107 | 466 | 277 | 18 | 21 | 455 | 74 | 498 | 5.54e-25 | 108 |
MS.gene06353.t1 | MTR_5g081630 | 26.077 | 418 | 258 | 14 | 58 | 465 | 4 | 380 | 2.84e-22 | 98.6 |
MS.gene06353.t1 | MTR_5g023260 | 23.831 | 449 | 282 | 16 | 27 | 452 | 107 | 518 | 3.99e-21 | 96.7 |
MS.gene06353.t1 | MTR_1g492640 | 26.923 | 364 | 221 | 15 | 116 | 466 | 16 | 347 | 9.67e-19 | 87.8 |
MS.gene06353.t1 | MTR_5g023240 | 23.877 | 423 | 267 | 16 | 28 | 430 | 87 | 474 | 4.91e-18 | 87.0 |
MS.gene06353.t1 | MTR_3g069960 | 25.376 | 465 | 291 | 18 | 17 | 465 | 9 | 433 | 1.05e-17 | 85.5 |
MS.gene06353.t1 | MTR_3g069960 | 27.295 | 403 | 242 | 18 | 73 | 465 | 19 | 380 | 1.63e-17 | 84.3 |
MS.gene06353.t1 | MTR_4g104510 | 23.029 | 482 | 303 | 17 | 1 | 465 | 15 | 445 | 4.29e-16 | 80.9 |
MS.gene06353.t1 | MTR_4g104510 | 22.934 | 484 | 303 | 17 | 1 | 465 | 15 | 447 | 1.19e-15 | 79.3 |
MS.gene06353.t1 | MTR_1g492640 | 25.484 | 310 | 205 | 11 | 38 | 338 | 70 | 362 | 6.75e-15 | 76.6 |
MS.gene06353.t1 | MTR_1g492640 | 25.484 | 310 | 205 | 11 | 38 | 338 | 52 | 344 | 7.64e-15 | 76.3 |
MS.gene06353.t1 | MTR_2g012470 | 22.944 | 462 | 295 | 15 | 27 | 464 | 95 | 519 | 6.75e-13 | 71.2 |
MS.gene06353.t1 | MTR_1g094620 | 23.590 | 390 | 243 | 13 | 40 | 419 | 162 | 506 | 5.80e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06353.t1 | AT5G09220 | 69.462 | 465 | 136 | 3 | 11 | 469 | 29 | 493 | 0.0 | 694 |
MS.gene06353.t1 | AT1G77380 | 69.828 | 464 | 135 | 2 | 11 | 469 | 13 | 476 | 0.0 | 675 |
MS.gene06353.t1 | AT5G63850 | 68.202 | 456 | 139 | 3 | 20 | 469 | 11 | 466 | 0.0 | 671 |
MS.gene06353.t1 | AT1G44100 | 64.375 | 480 | 160 | 3 | 1 | 469 | 1 | 480 | 0.0 | 650 |
MS.gene06353.t1 | AT1G58360 | 55.850 | 453 | 194 | 3 | 21 | 467 | 30 | 482 | 0.0 | 541 |
MS.gene06353.t1 | AT1G10010 | 56.763 | 451 | 189 | 3 | 21 | 465 | 21 | 471 | 0.0 | 539 |
MS.gene06353.t1 | AT1G10010 | 56.763 | 451 | 189 | 3 | 21 | 465 | 22 | 472 | 0.0 | 539 |
MS.gene06353.t1 | AT5G49630 | 56.485 | 478 | 195 | 8 | 1 | 465 | 1 | 478 | 0.0 | 535 |
MS.gene06353.t1 | AT5G23810 | 47.732 | 463 | 226 | 7 | 1 | 452 | 1 | 458 | 4.37e-142 | 416 |
MS.gene06353.t1 | AT5G23810 | 48.571 | 350 | 171 | 5 | 1 | 345 | 1 | 346 | 1.17e-107 | 324 |
MS.gene06353.t1 | AT5G23810 | 47.308 | 260 | 130 | 4 | 1 | 257 | 1 | 256 | 1.88e-75 | 238 |
MS.gene06353.t1 | AT5G23810 | 46.698 | 212 | 108 | 3 | 1 | 209 | 1 | 210 | 7.46e-59 | 193 |
MS.gene06353.t1 | AT5G23810 | 46.698 | 212 | 108 | 3 | 1 | 209 | 1 | 210 | 7.46e-59 | 193 |
MS.gene06353.t1 | AT5G40780 | 27.660 | 470 | 287 | 11 | 14 | 463 | 7 | 443 | 4.87e-46 | 166 |
MS.gene06353.t1 | AT1G24400 | 28.998 | 469 | 286 | 11 | 9 | 466 | 9 | 441 | 5.53e-46 | 166 |
MS.gene06353.t1 | AT1G48640 | 28.178 | 472 | 293 | 9 | 12 | 466 | 11 | 453 | 1.03e-45 | 165 |
MS.gene06353.t1 | AT1G67640 | 29.747 | 474 | 292 | 10 | 1 | 466 | 1 | 441 | 1.71e-44 | 162 |
MS.gene06353.t1 | AT5G40780 | 28.235 | 425 | 271 | 9 | 43 | 463 | 1 | 395 | 7.10e-42 | 154 |
MS.gene06353.t1 | AT5G40780 | 28.235 | 425 | 271 | 9 | 43 | 463 | 1 | 395 | 7.10e-42 | 154 |
MS.gene06353.t1 | AT3G01760 | 26.923 | 468 | 300 | 10 | 9 | 461 | 2 | 442 | 2.25e-41 | 153 |
MS.gene06353.t1 | AT1G61270 | 28.507 | 442 | 276 | 9 | 28 | 461 | 34 | 443 | 8.26e-40 | 149 |
MS.gene06353.t1 | AT1G71680 | 28.477 | 453 | 271 | 10 | 28 | 466 | 35 | 448 | 1.50e-37 | 143 |
MS.gene06353.t1 | AT1G71680 | 30.539 | 334 | 193 | 8 | 28 | 347 | 35 | 343 | 2.87e-33 | 129 |
MS.gene06353.t1 | AT1G08230 | 27.938 | 451 | 286 | 12 | 26 | 465 | 26 | 448 | 6.75e-32 | 127 |
MS.gene06353.t1 | AT1G25530 | 26.477 | 457 | 297 | 11 | 13 | 463 | 14 | 437 | 8.05e-31 | 124 |
MS.gene06353.t1 | AT5G41800 | 25.702 | 463 | 286 | 15 | 26 | 468 | 25 | 449 | 2.69e-26 | 111 |
MS.gene06353.t1 | AT2G39890 | 25.481 | 416 | 263 | 13 | 58 | 465 | 63 | 439 | 1.33e-22 | 100 |
MS.gene06353.t1 | AT2G39890 | 25.481 | 416 | 263 | 13 | 58 | 465 | 63 | 439 | 1.33e-22 | 100 |
MS.gene06353.t1 | AT2G39890 | 25.481 | 416 | 263 | 13 | 58 | 465 | 4 | 380 | 1.84e-22 | 99.4 |
MS.gene06353.t1 | AT2G36590 | 25.436 | 401 | 248 | 15 | 33 | 422 | 30 | 390 | 2.04e-21 | 96.7 |
MS.gene06353.t1 | AT1G08230 | 29.582 | 311 | 193 | 7 | 163 | 465 | 37 | 329 | 7.41e-21 | 94.0 |
MS.gene06353.t1 | AT1G08230 | 29.582 | 311 | 193 | 7 | 163 | 465 | 37 | 329 | 7.41e-21 | 94.0 |
MS.gene06353.t1 | AT1G08230 | 29.582 | 311 | 193 | 7 | 163 | 465 | 37 | 329 | 7.41e-21 | 94.0 |
MS.gene06353.t1 | AT1G08230 | 29.582 | 311 | 193 | 7 | 163 | 465 | 56 | 348 | 8.04e-21 | 94.0 |
MS.gene06353.t1 | AT3G55740 | 25.178 | 421 | 258 | 15 | 58 | 465 | 60 | 436 | 2.18e-20 | 93.6 |
MS.gene06353.t1 | AT3G55740 | 24.703 | 421 | 260 | 14 | 58 | 465 | 4 | 380 | 2.38e-20 | 93.2 |
MS.gene06353.t1 | AT3G55740 | 24.703 | 421 | 260 | 14 | 58 | 465 | 4 | 380 | 2.38e-20 | 93.2 |
MS.gene06353.t1 | AT4G35180 | 24.429 | 438 | 286 | 11 | 27 | 451 | 57 | 462 | 4.09e-15 | 77.8 |
MS.gene06353.t1 | AT1G47670 | 23.377 | 462 | 293 | 15 | 27 | 464 | 93 | 517 | 3.14e-12 | 68.9 |
MS.gene06353.t1 | AT5G02170 | 21.934 | 424 | 288 | 11 | 2 | 422 | 105 | 488 | 4.17e-11 | 65.5 |
Find 94 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCCATTTATAACTCCATTT+TGG | 0.096747 | 3.1:-77282432 | None:intergenic |
TCTTTCACCTATTCCTTTAT+TGG | 0.119863 | 3.1:+77281352 | MS.gene06353:CDS |
TCCTTTCTTCAATGATGTTT+TGG | 0.143872 | 3.1:+77282332 | MS.gene06353:CDS |
TCCTTCAAGGGTAGCCTTAC+AGG | 0.203563 | 3.1:+77281508 | MS.gene06353:CDS |
TCAAATTCTCATTGAAATTC+AGG | 0.204663 | 3.1:+77281618 | MS.gene06353:CDS |
ACCTATTCCTTTATTGGCCT+TGG | 0.221167 | 3.1:+77281358 | MS.gene06353:CDS |
GAATTTGAGAAAAGAAAATT+TGG | 0.225678 | 3.1:-77281282 | None:intergenic |
TACTTGGAGCAGTAGGGTTT+TGG | 0.256465 | 3.1:+77282358 | MS.gene06353:CDS |
ACTGGAAAATAGACTGTTAA+AGG | 0.269131 | 3.1:-77282381 | None:intergenic |
GGAAGCTGTTCACACCATTC+TGG | 0.269142 | 3.1:+77279951 | MS.gene06353:CDS |
TCCCAAAATGGAGTTATAAA+TGG | 0.282029 | 3.1:+77282430 | MS.gene06353:CDS |
GTCATCATCATCATACAAAT+TGG | 0.302533 | 3.1:-77279525 | None:intergenic |
GAATACCGAATTCCAATTCC+TGG | 0.303298 | 3.1:+77282225 | MS.gene06353:CDS |
GCAATATCAATGAGCCAATA+TGG | 0.308652 | 3.1:-77282093 | None:intergenic |
CACACCTATACTTATCTTTG+TGG | 0.330592 | 3.1:-77281980 | None:intergenic |
TAAATCTATTCAGATTAATA+TGG | 0.331283 | 3.1:+77282265 | MS.gene06353:CDS |
GTTCAGTACACAAATCTTTA+CGG | 0.334346 | 3.1:+77280434 | MS.gene06353:CDS |
GCTCAGTTGGGTTGGGTGAT+TGG | 0.347023 | 3.1:+77279817 | MS.gene06353:CDS |
TTAGCTGAATGTTATCGAAT+TGG | 0.352508 | 3.1:+77279892 | MS.gene06353:CDS |
TAGGGTTGAAAACCAGGAAT+TGG | 0.354439 | 3.1:-77282237 | None:intergenic |
CGAATTGGCGATCCTCATTA+CGG | 0.356500 | 3.1:+77279907 | MS.gene06353:CDS |
CTAAATATAACCTGCAACTT+TGG | 0.358818 | 3.1:-77281392 | None:intergenic |
CTAGCAGTTGCCAAAGTTGC+AGG | 0.362617 | 3.1:+77281382 | MS.gene06353:CDS |
TGCTAGACCAAGGCCAATAA+AGG | 0.370826 | 3.1:-77281365 | None:intergenic |
TCTGAATAGATTTAGATTGT+AGG | 0.380758 | 3.1:-77282256 | None:intergenic |
AATCTTTACGGAACTGCAAT+AGG | 0.394383 | 3.1:+77280446 | MS.gene06353:CDS |
CTGAATAGATTTAGATTGTA+GGG | 0.395935 | 3.1:-77282255 | None:intergenic |
GTATCAGTTGTGGCTGTTGT+TGG | 0.403765 | 3.1:+77282489 | MS.gene06353:CDS |
TTGGGATTACTTGGAGCAGT+AGG | 0.409541 | 3.1:+77282351 | MS.gene06353:CDS |
AAAGAGAAACTATACTTTCA+TGG | 0.411359 | 3.1:+77279930 | MS.gene06353:CDS |
GAAAACCAGGAATTGGAATT+CGG | 0.418612 | 3.1:-77282230 | None:intergenic |
TCCTGTAAGGCTACCCTTGA+AGG | 0.421245 | 3.1:-77281509 | None:intergenic |
AATCCATACATGATAGCATT+TGG | 0.426053 | 3.1:+77281253 | MS.gene06353:CDS |
GCAATAGGATACACAATTGC+GGG | 0.428317 | 3.1:+77280461 | MS.gene06353:CDS |
GCTGAGACAGGGCAATAAAA+AGG | 0.429469 | 3.1:+77281179 | MS.gene06353:intron |
AGAAGGGTTGCGCGTATACT+TGG | 0.437084 | 3.1:-77282152 | None:intergenic |
GGGCAATAGCTCAGTTGGGT+TGG | 0.438417 | 3.1:+77279809 | MS.gene06353:CDS |
GAAGCTGTTCACACCATTCT+GGG | 0.441958 | 3.1:+77279952 | MS.gene06353:CDS |
ACTCCAAATGCTATCATGTA+TGG | 0.442408 | 3.1:-77281256 | None:intergenic |
GACAGAAAATGGTTCCTTCA+AGG | 0.449757 | 3.1:+77281495 | MS.gene06353:intron |
TTTCTCGACGAAAGCAAAGA+AGG | 0.450672 | 3.1:-77282169 | None:intergenic |
TCTGACTGTTTGCATTCCTC+AGG | 0.454495 | 3.1:+77281202 | MS.gene06353:CDS |
TATCAGTTGTGGCTGTTGTT+GGG | 0.456332 | 3.1:+77282490 | MS.gene06353:CDS |
CACATAATAACAGCAGTTGT+AGG | 0.459141 | 3.1:+77279763 | MS.gene06353:CDS |
GATCACTCACATCATGCTAA+TGG | 0.460901 | 3.1:-77280486 | None:intergenic |
TGGGGAACTTTCCAAGCTCT+TGG | 0.462799 | 3.1:+77281568 | MS.gene06353:CDS |
TTTCAATAATCAGTTGTGAA+TGG | 0.464770 | 3.1:-77282552 | None:intergenic |
TGCATGGGTTATGCAGCATT+TGG | 0.465101 | 3.1:+77282030 | MS.gene06353:CDS |
GGTTTCAATGACACCCTTTG+TGG | 0.466023 | 3.1:+77280407 | MS.gene06353:CDS |
ACCAAGGCCAATAAAGGAAT+AGG | 0.466847 | 3.1:-77281359 | None:intergenic |
TAGTTTCTCTTTCCGTAATG+AGG | 0.467007 | 3.1:-77279919 | None:intergenic |
GGCAATAGCTCAGTTGGGTT+GGG | 0.467438 | 3.1:+77279810 | MS.gene06353:CDS |
GCATTTGGAGACACAGCACC+AGG | 0.467683 | 3.1:+77282045 | MS.gene06353:CDS |
ATAACAGCAGTTGTAGGATC+AGG | 0.483816 | 3.1:+77279769 | MS.gene06353:CDS |
TTCCAATGCTTACTCCTGTA+AGG | 0.491026 | 3.1:-77281522 | None:intergenic |
AGCATGGGCAATAGCTCAGT+TGG | 0.492596 | 3.1:+77279804 | MS.gene06353:CDS |
CAAGCCACAAAGATAAGTAT+AGG | 0.492781 | 3.1:+77281976 | MS.gene06353:CDS |
AGGCTATGTTGCCAAGAGCT+TGG | 0.496753 | 3.1:-77281579 | None:intergenic |
ACAGAAAATGGTTCCTTCAA+GGG | 0.502482 | 3.1:+77281496 | MS.gene06353:intron |
CCCAAAACATCATTGAAGAA+AGG | 0.503059 | 3.1:-77282333 | None:intergenic |
TTATATGCTTTGTGGCTGCA+TGG | 0.505265 | 3.1:+77282014 | MS.gene06353:CDS |
GATGACCGTCTCAAAAGAAC+AGG | 0.508021 | 3.1:+77279542 | MS.gene06353:CDS |
AGATTGTAGGGTTGAAAACC+AGG | 0.509683 | 3.1:-77282243 | None:intergenic |
GCTATCGTAATTCACCTTGT+GGG | 0.513660 | 3.1:+77282123 | MS.gene06353:CDS |
CAGGAGTGTTGTCGTTAGCA+TGG | 0.516340 | 3.1:+77279788 | MS.gene06353:CDS |
TGGGATTACTTGGAGCAGTA+GGG | 0.521905 | 3.1:+77282352 | MS.gene06353:CDS |
CGCTATCGTAATTCACCTTG+TGG | 0.523493 | 3.1:+77282122 | MS.gene06353:CDS |
GACTGTTTGCATTCCTCAGG+AGG | 0.526744 | 3.1:+77281205 | MS.gene06353:CDS |
GCATGGGCAATAGCTCAGTT+GGG | 0.527744 | 3.1:+77279805 | MS.gene06353:CDS |
TGTTTGATATACATCTCCAC+TGG | 0.530626 | 3.1:-77282399 | None:intergenic |
GTTTCAATGACACCCTTTGT+GGG | 0.537172 | 3.1:+77280408 | MS.gene06353:CDS |
TATATGCTTTGTGGCTGCAT+GGG | 0.540477 | 3.1:+77282015 | MS.gene06353:CDS |
TGTGGCTGTTGTTGGGTCAG+TGG | 0.549777 | 3.1:+77282497 | MS.gene06353:CDS |
TTCTCGACGAAAGCAAAGAA+GGG | 0.555174 | 3.1:-77282168 | None:intergenic |
AGCCTTACAGGAGTAAGCAT+TGG | 0.562434 | 3.1:+77281520 | MS.gene06353:CDS |
GTACTGAACTATCCCACAAA+GGG | 0.571823 | 3.1:-77280420 | None:intergenic |
GCACCAGGGAACTTACTCAC+TGG | 0.573888 | 3.1:+77282060 | MS.gene06353:CDS |
CTGAAGAAAATCATAACTGA+AGG | 0.583795 | 3.1:-77279841 | None:intergenic |
AGGAGTGTTGTCGTTAGCAT+GGG | 0.586525 | 3.1:+77279789 | MS.gene06353:CDS |
ATCTATTCAGATTAATATGG+AGG | 0.594981 | 3.1:+77282268 | MS.gene06353:CDS |
TCTAGAATTTGACATGGAGG+TGG | 0.597976 | 3.1:+77279463 | None:intergenic |
ATGTCTTGTAGTATCAGTTG+TGG | 0.607208 | 3.1:+77282479 | MS.gene06353:CDS |
AAATTGGAGTCTTTGTGTGA+AGG | 0.608942 | 3.1:-77279509 | None:intergenic |
ATTCCAGTGAGTAAGTTCCC+TGG | 0.614262 | 3.1:-77282063 | None:intergenic |
TGCAATAGGATACACAATTG+CGG | 0.626230 | 3.1:+77280460 | MS.gene06353:CDS |
GTATAAAGAGTTACCCAGAA+TGG | 0.630066 | 3.1:-77279965 | None:intergenic |
TTGAGAATATGAATATGCAA+AGG | 0.631765 | 3.1:-77281599 | None:intergenic |
ATACTTGGTATGCTCCCACA+AGG | 0.667351 | 3.1:-77282137 | None:intergenic |
ACATTCAGCTAAAAGTGATG+AGG | 0.668677 | 3.1:-77279881 | None:intergenic |
TGTACTGAACTATCCCACAA+AGG | 0.675008 | 3.1:-77280421 | None:intergenic |
CACAAGGTGAATTACGATAG+CGG | 0.685183 | 3.1:-77282121 | None:intergenic |
CTTTGGCAACTGCTAGACCA+AGG | 0.697595 | 3.1:-77281375 | None:intergenic |
CATTTGGAGACACAGCACCA+GGG | 0.729488 | 3.1:+77282046 | MS.gene06353:CDS |
AATCAACATTGCTATCACAG+TGG | 0.767055 | 3.1:-77282310 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAATAAATTTGTAACAA+TGG | - | chr3.1:77280966-77280985 | None:intergenic | 10.0% |
!! | TGAATTTAATTAATGTAAAA+TGG | - | chr3.1:77279606-77279625 | None:intergenic | 10.0% |
!!! | AAAATCAATATCAATTTTTT+TGG | - | chr3.1:77280596-77280615 | None:intergenic | 10.0% |
!!! | AAATCAATATCAATTTTTTT+GGG | - | chr3.1:77280595-77280614 | None:intergenic | 10.0% |
!!! | AAGATAATTTTATTCTTAAT+TGG | - | chr3.1:77280686-77280705 | None:intergenic | 10.0% |
!!! | ATTGTTACAAATTTATTTTT+AGG | + | chr3.1:77280965-77280984 | MS.gene06353:intron | 10.0% |
!!! | ATTTTATTCAATTTATCTTT+TGG | + | chr3.1:77280784-77280803 | MS.gene06353:intron | 10.0% |
!!! | TAAATAGTAAAATTTTGAAA+TGG | + | chr3.1:77280331-77280350 | MS.gene06353:intron | 10.0% |
!! | TAAATCTATTCAGATTAATA+TGG | + | chr3.1:77282265-77282284 | MS.gene06353:CDS | 15.0% |
!! | ACATATATAGAAATCAGATT+TGG | + | chr3.1:77280757-77280776 | MS.gene06353:intron | 20.0% |
!! | AGAAAATTGTGATAAAAAGA+TGG | + | chr3.1:77282187-77282206 | MS.gene06353:CDS | 20.0% |
!! | ATATGATAAAAAGTGACAAA+AGG | + | chr3.1:77279702-77279721 | MS.gene06353:intron | 20.0% |
!! | GAATTTGAGAAAAGAAAATT+TGG | - | chr3.1:77281285-77281304 | None:intergenic | 20.0% |
!! | TCTGAAAAAAGTTTATAAAC+CGG | - | chr3.1:77281823-77281842 | None:intergenic | 20.0% |
!! | TTTAATAATCACTACTAGAA+AGG | + | chr3.1:77280201-77280220 | MS.gene06353:intron | 20.0% |
!! | TTTGACAAAATTTGTAACAA+TGG | - | chr3.1:77280939-77280958 | None:intergenic | 20.0% |
!!! | ACCATATTAAGTTTTTATAC+CGG | + | chr3.1:77281773-77281792 | MS.gene06353:intron | 20.0% |
!!! | ACTATTTTTGATATTCTGTT+TGG | + | chr3.1:77280114-77280133 | MS.gene06353:intron | 20.0% |
!!! | ATTATATGTATGATGATGAT+AGG | + | chr3.1:77279637-77279656 | MS.gene06353:intron | 20.0% |
!!! | CAAGAATATTTAGTTTGATA+TGG | + | chr3.1:77281124-77281143 | MS.gene06353:intron | 20.0% |
!!! | TGTTTTAATTAAACTGGTTT+TGG | + | chr3.1:77281157-77281176 | MS.gene06353:intron | 20.0% |
! | AAAATCGAACCAAATCAAAT+TGG | + | chr3.1:77280027-77280046 | MS.gene06353:intron | 25.0% |
! | AAAATTTGTAACAATGGATG+TGG | - | chr3.1:77280933-77280952 | None:intergenic | 25.0% |
! | AAAGAGAAACTATACTTTCA+TGG | + | chr3.1:77279930-77279949 | MS.gene06353:CDS | 25.0% |
! | AACAAAAAAAGATCCCAAAA+TGG | + | chr3.1:77282418-77282437 | MS.gene06353:CDS | 25.0% |
! | ATATGAAGCAATAGTGTTTA+TGG | + | chr3.1:77280059-77280078 | MS.gene06353:intron | 25.0% |
! | ATCTATTCAGATTAATATGG+AGG | + | chr3.1:77282268-77282287 | MS.gene06353:CDS | 25.0% |
! | ATGCATTCTTCTTATAAAAC+CGG | + | chr3.1:77281801-77281820 | MS.gene06353:intron | 25.0% |
! | CTGAATAGATTTAGATTGTA+GGG | - | chr3.1:77282258-77282277 | None:intergenic | 25.0% |
! | TATGATAAATTTAACTCCAC+AGG | + | chr3.1:77281912-77281931 | MS.gene06353:intron | 25.0% |
! | TATTCTTGTCAACAGAAATA+AGG | - | chr3.1:77281112-77281131 | None:intergenic | 25.0% |
! | TCAAATTCTCATTGAAATTC+AGG | + | chr3.1:77281618-77281637 | MS.gene06353:CDS | 25.0% |
! | TCTGAATAGATTTAGATTGT+AGG | - | chr3.1:77282259-77282278 | None:intergenic | 25.0% |
! | TTGAGAATATGAATATGCAA+AGG | - | chr3.1:77281602-77281621 | None:intergenic | 25.0% |
!! | ATATAGAAATCAGATTTGGT+TGG | + | chr3.1:77280761-77280780 | MS.gene06353:intron | 25.0% |
!! | ATCCATTTATAACTCCATTT+TGG | - | chr3.1:77282435-77282454 | None:intergenic | 25.0% |
!! | CCATATTAAGTTTTTATACC+GGG | + | chr3.1:77281774-77281793 | MS.gene06353:intron | 25.0% |
!! | CTGGAATTTTTAATCCATAT+TGG | + | chr3.1:77282079-77282098 | MS.gene06353:CDS | 25.0% |
!! | TCCATTTATAACTCCATTTT+GGG | - | chr3.1:77282434-77282453 | None:intergenic | 25.0% |
!!! | ATAAACTTTTTTCAGAACGT+GGG | + | chr3.1:77281827-77281846 | MS.gene06353:intron | 25.0% |
!!! | CGGTATTCTTTGTTTATTTT+AGG | - | chr3.1:77282213-77282232 | None:intergenic | 25.0% |
!!! | TATAAACTTTTTTCAGAACG+TGG | + | chr3.1:77281826-77281845 | MS.gene06353:intron | 25.0% |
!!! | TGAGTGTGTTTTAATTAAAC+TGG | + | chr3.1:77281151-77281170 | MS.gene06353:intron | 25.0% |
!!! | TTCATTGTTTTTACTTCAGA+TGG | - | chr3.1:77281955-77281974 | None:intergenic | 25.0% |
!!! | TTCCAGATTTTGATAAAATG+TGG | + | chr3.1:77281302-77281321 | MS.gene06353:CDS | 25.0% |
AATCCATACATGATAGCATT+TGG | + | chr3.1:77281253-77281272 | MS.gene06353:CDS | 30.0% | |
AATTGTTCTACGACAGAAAA+TGG | + | chr3.1:77281484-77281503 | MS.gene06353:intron | 30.0% | |
ACAGAAATAAGGTCAATTAC+TGG | - | chr3.1:77281101-77281120 | None:intergenic | 30.0% | |
ACTGGAAAATAGACTGTTAA+AGG | - | chr3.1:77282384-77282403 | None:intergenic | 30.0% | |
ATAACATTCCATTTCTCAGA+AGG | + | chr3.1:77281434-77281453 | MS.gene06353:intron | 30.0% | |
ATTGGAAAAAACCTAAGACA+TGG | - | chr3.1:77281678-77281697 | None:intergenic | 30.0% | |
CACCAAATTCAATAGTGTTT+GGG | - | chr3.1:77281712-77281731 | None:intergenic | 30.0% | |
CCCGGTATAAAAACTTAATA+TGG | - | chr3.1:77281777-77281796 | None:intergenic | 30.0% | |
CTAAATATAACCTGCAACTT+TGG | - | chr3.1:77281395-77281414 | None:intergenic | 30.0% | |
CTGAAGAAAATCATAACTGA+AGG | - | chr3.1:77279844-77279863 | None:intergenic | 30.0% | |
GTCATCATCATCATACAAAT+TGG | - | chr3.1:77279528-77279547 | None:intergenic | 30.0% | |
GTTCAGTACACAAATCTTTA+CGG | + | chr3.1:77280434-77280453 | MS.gene06353:CDS | 30.0% | |
TCCCAAAATGGAGTTATAAA+TGG | + | chr3.1:77282430-77282449 | MS.gene06353:CDS | 30.0% | |
TCTTTCACCTATTCCTTTAT+TGG | + | chr3.1:77281352-77281371 | MS.gene06353:CDS | 30.0% | |
TTAGCTGAATGTTATCGAAT+TGG | + | chr3.1:77279892-77279911 | MS.gene06353:CDS | 30.0% | |
TTCAACAGTCCAATTTGATT+TGG | - | chr3.1:77280039-77280058 | None:intergenic | 30.0% | |
! | AATCAAATGATTTTTGCAGG+AGG | + | chr3.1:77280386-77280405 | MS.gene06353:intron | 30.0% |
! | ACTGCATTTTATATGCTTTG+TGG | + | chr3.1:77282006-77282025 | MS.gene06353:CDS | 30.0% |
! | CACCACATTTTATCAAAATC+TGG | - | chr3.1:77281307-77281326 | None:intergenic | 30.0% |
! | CCTTTCTTCAATGATGTTTT+GGG | + | chr3.1:77282333-77282352 | MS.gene06353:CDS | 30.0% |
! | GAGAATCAAATGATTTTTGC+AGG | + | chr3.1:77280383-77280402 | MS.gene06353:intron | 30.0% |
! | TCCTTTCTTCAATGATGTTT+TGG | + | chr3.1:77282332-77282351 | MS.gene06353:CDS | 30.0% |
! | TTGCTGTTAATCATAACTGA+GGG | + | chr3.1:77280889-77280908 | MS.gene06353:intron | 30.0% |
! | TTTAACAGTCTATTTTCCAG+TGG | + | chr3.1:77282383-77282402 | MS.gene06353:CDS | 30.0% |
!! | CAGATTTTGATAAAATGTGG+TGG | + | chr3.1:77281305-77281324 | MS.gene06353:CDS | 30.0% |
!! | GTTTTGAACATAGAGAGAAA+AGG | - | chr3.1:77281648-77281667 | None:intergenic | 30.0% |
!! | TTTGCTGTTAATCATAACTG+AGG | + | chr3.1:77280888-77280907 | MS.gene06353:intron | 30.0% |
!!! | AATGATGTTTTGGGATTACT+TGG | + | chr3.1:77282342-77282361 | MS.gene06353:CDS | 30.0% |
!!! | ATTGTTTTTACTTCAGATGG+TGG | - | chr3.1:77281952-77281971 | None:intergenic | 30.0% |
!!! | GTTTGCTGTTTCTTTTGAAA+AGG | + | chr3.1:77280173-77280192 | MS.gene06353:intron | 30.0% |
!!! | TGACTTTGTTTTTGACTTCT+TGG | - | chr3.1:77280241-77280260 | None:intergenic | 30.0% |
!!! | TTCAGATGGTGGATTTTTTA+TGG | - | chr3.1:77281941-77281960 | None:intergenic | 30.0% |
AAACTAGTGTACCATGTCTT+AGG | + | chr3.1:77281664-77281683 | MS.gene06353:intron | 35.0% | |
AAATTGGAGTCTTTGTGTGA+AGG | - | chr3.1:77279512-77279531 | None:intergenic | 35.0% | |
AATAGTGTTTGGGCTTAAGT+GGG | - | chr3.1:77281702-77281721 | None:intergenic | 35.0% | |
AATCAACATTGCTATCACAG+TGG | - | chr3.1:77282313-77282332 | None:intergenic | 35.0% | |
AATCTTTACGGAACTGCAAT+AGG | + | chr3.1:77280446-77280465 | MS.gene06353:CDS | 35.0% | |
ACAATGGATGTGGTACATAT+AGG | - | chr3.1:77280923-77280942 | None:intergenic | 35.0% | |
ACAGAAAATGGTTCCTTCAA+GGG | + | chr3.1:77281496-77281515 | MS.gene06353:intron | 35.0% | |
ACATTCAGCTAAAAGTGATG+AGG | - | chr3.1:77279884-77279903 | None:intergenic | 35.0% | |
ACTCCAAATGCTATCATGTA+TGG | - | chr3.1:77281259-77281278 | None:intergenic | 35.0% | |
AGCCCAAACACTATTGAATT+TGG | + | chr3.1:77281707-77281726 | MS.gene06353:intron | 35.0% | |
ATGTCTTGTAGTATCAGTTG+TGG | + | chr3.1:77282479-77282498 | MS.gene06353:CDS | 35.0% | |
CAAGCCACAAAGATAAGTAT+AGG | + | chr3.1:77281976-77281995 | MS.gene06353:CDS | 35.0% | |
CACACCTATACTTATCTTTG+TGG | - | chr3.1:77281983-77282002 | None:intergenic | 35.0% | |
CACATAATAACAGCAGTTGT+AGG | + | chr3.1:77279763-77279782 | MS.gene06353:CDS | 35.0% | |
CCCAAAACATCATTGAAGAA+AGG | - | chr3.1:77282336-77282355 | None:intergenic | 35.0% | |
GAAAACCAGGAATTGGAATT+CGG | - | chr3.1:77282233-77282252 | None:intergenic | 35.0% | |
GCAATATCAATGAGCCAATA+TGG | - | chr3.1:77282096-77282115 | None:intergenic | 35.0% | |
GCACCAAATTCAATAGTGTT+TGG | - | chr3.1:77281713-77281732 | None:intergenic | 35.0% | |
GGTGCGTAGATATAAATTGT+GGG | + | chr3.1:77281728-77281747 | MS.gene06353:intron | 35.0% | |
GTATAAAGAGTTACCCAGAA+TGG | - | chr3.1:77279968-77279987 | None:intergenic | 35.0% | |
TAAAACTGATATCGTGCTTG+AGG | - | chr3.1:77280738-77280757 | None:intergenic | 35.0% | |
TAAGAAGAATGCATAAGACC+CGG | - | chr3.1:77281795-77281814 | None:intergenic | 35.0% | |
TAGTTTCTCTTTCCGTAATG+AGG | - | chr3.1:77279922-77279941 | None:intergenic | 35.0% | |
TGACAAAAGCCCAAAAAGTA+TGG | + | chr3.1:77281548-77281567 | MS.gene06353:CDS | 35.0% | |
TGCAATAGGATACACAATTG+CGG | + | chr3.1:77280460-77280479 | MS.gene06353:CDS | 35.0% | |
TGGTGCGTAGATATAAATTG+TGG | + | chr3.1:77281727-77281746 | MS.gene06353:intron | 35.0% | |
TGTTTGATATACATCTCCAC+TGG | - | chr3.1:77282402-77282421 | None:intergenic | 35.0% | |
! | ACAAAAGCCCAAAAAGTATG+GGG | + | chr3.1:77281550-77281569 | MS.gene06353:CDS | 35.0% |
! | GACAAAAGCCCAAAAAGTAT+GGG | + | chr3.1:77281549-77281568 | MS.gene06353:CDS | 35.0% |
! | TACTGGTGTTAGATATGTTC+TGG | - | chr3.1:77281084-77281103 | None:intergenic | 35.0% |
! | TTTTCTTCAGTCTCATCACT+TGG | + | chr3.1:77279854-77279873 | MS.gene06353:CDS | 35.0% |
!! | GAAAGTTCCCCATACTTTTT+GGG | - | chr3.1:77281560-77281579 | None:intergenic | 35.0% |
!! | TAGTACCTGTTCTTTTGAGA+CGG | - | chr3.1:77279550-77279569 | None:intergenic | 35.0% |
!!! | CAAAAGGTACTTTTTGAGAC+AGG | + | chr3.1:77279718-77279737 | MS.gene06353:intron | 35.0% |
!!! | TGCTTTTTCCTTCTGAGAAA+TGG | - | chr3.1:77281445-77281464 | None:intergenic | 35.0% |
ACCAAGGCCAATAAAGGAAT+AGG | - | chr3.1:77281362-77281381 | None:intergenic | 40.0% | |
AGATTGTAGGGTTGAAAACC+AGG | - | chr3.1:77282246-77282265 | None:intergenic | 40.0% | |
ATAACAGCAGTTGTAGGATC+AGG | + | chr3.1:77279769-77279788 | MS.gene06353:CDS | 40.0% | |
CAATAGTGTTTGGGCTTAAG+TGG | - | chr3.1:77281703-77281722 | None:intergenic | 40.0% | |
CACAAGGTGAATTACGATAG+CGG | - | chr3.1:77282124-77282143 | None:intergenic | 40.0% | |
GAATACCGAATTCCAATTCC+TGG | + | chr3.1:77282225-77282244 | MS.gene06353:CDS | 40.0% | |
GACAGAAAATGGTTCCTTCA+AGG | + | chr3.1:77281495-77281514 | MS.gene06353:intron | 40.0% | |
GATCACTCACATCATGCTAA+TGG | - | chr3.1:77280489-77280508 | None:intergenic | 40.0% | |
GCAATAGGATACACAATTGC+GGG | + | chr3.1:77280461-77280480 | MS.gene06353:CDS | 40.0% | |
GCTATCGTAATTCACCTTGT+GGG | + | chr3.1:77282123-77282142 | MS.gene06353:CDS | 40.0% | |
GTACTGAACTATCCCACAAA+GGG | - | chr3.1:77280423-77280442 | None:intergenic | 40.0% | |
GTTTCAATGACACCCTTTGT+GGG | + | chr3.1:77280408-77280427 | MS.gene06353:CDS | 40.0% | |
TAGGGTTGAAAACCAGGAAT+TGG | - | chr3.1:77282240-77282259 | None:intergenic | 40.0% | |
TATATGCTTTGTGGCTGCAT+GGG | + | chr3.1:77282015-77282034 | MS.gene06353:CDS | 40.0% | |
TATCAGTTGTGGCTGTTGTT+GGG | + | chr3.1:77282490-77282509 | MS.gene06353:CDS | 40.0% | |
TCACACGCTTGTACTTGATT+TGG | + | chr3.1:77280258-77280277 | MS.gene06353:intron | 40.0% | |
TGTACTGAACTATCCCACAA+AGG | - | chr3.1:77280424-77280443 | None:intergenic | 40.0% | |
TTATATGCTTTGTGGCTGCA+TGG | + | chr3.1:77282014-77282033 | MS.gene06353:CDS | 40.0% | |
TTCCAATGCTTACTCCTGTA+AGG | - | chr3.1:77281525-77281544 | None:intergenic | 40.0% | |
TTCTCGACGAAAGCAAAGAA+GGG | - | chr3.1:77282171-77282190 | None:intergenic | 40.0% | |
TTTCTCGACGAAAGCAAAGA+AGG | - | chr3.1:77282172-77282191 | None:intergenic | 40.0% | |
! | ACCTATTCCTTTATTGGCCT+TGG | + | chr3.1:77281358-77281377 | MS.gene06353:CDS | 40.0% |
! | GGAAAGTTCCCCATACTTTT+TGG | - | chr3.1:77281561-77281580 | None:intergenic | 40.0% |
!!! | GGATTTTTTATGGTGTCCTG+TGG | - | chr3.1:77281931-77281950 | None:intergenic | 40.0% |
!!! | GGTACTTTTTGAGACAGGAA+CGG | + | chr3.1:77279723-77279742 | MS.gene06353:intron | 40.0% |
!!! | TTTTTGAGACAGGAACGGTT+TGG | + | chr3.1:77279728-77279747 | MS.gene06353:intron | 40.0% |
AGCCTTACAGGAGTAAGCAT+TGG | + | chr3.1:77281520-77281539 | MS.gene06353:CDS | 45.0% | |
ATACTTGGTATGCTCCCACA+AGG | - | chr3.1:77282140-77282159 | None:intergenic | 45.0% | |
ATTCCAGTGAGTAAGTTCCC+TGG | - | chr3.1:77282066-77282085 | None:intergenic | 45.0% | |
CGAATTGGCGATCCTCATTA+CGG | + | chr3.1:77279907-77279926 | MS.gene06353:CDS | 45.0% | |
CGCTATCGTAATTCACCTTG+TGG | + | chr3.1:77282122-77282141 | MS.gene06353:CDS | 45.0% | |
GAAGCTGTTCACACCATTCT+GGG | + | chr3.1:77279952-77279971 | MS.gene06353:CDS | 45.0% | |
GATGACCGTCTCAAAAGAAC+AGG | + | chr3.1:77279542-77279561 | MS.gene06353:CDS | 45.0% | |
GCTGAGACAGGGCAATAAAA+AGG | + | chr3.1:77281179-77281198 | MS.gene06353:intron | 45.0% | |
GGTTTCAATGACACCCTTTG+TGG | + | chr3.1:77280407-77280426 | MS.gene06353:CDS | 45.0% | |
GTATCAGTTGTGGCTGTTGT+TGG | + | chr3.1:77282489-77282508 | MS.gene06353:CDS | 45.0% | |
GTTTGGGCTTAAGTGGGTAT+TGG | - | chr3.1:77281696-77281715 | None:intergenic | 45.0% | |
TCTGACTGTTTGCATTCCTC+AGG | + | chr3.1:77281202-77281221 | MS.gene06353:CDS | 45.0% | |
TGCTAGACCAAGGCCAATAA+AGG | - | chr3.1:77281368-77281387 | None:intergenic | 45.0% | |
TGGGATTACTTGGAGCAGTA+GGG | + | chr3.1:77282352-77282371 | MS.gene06353:CDS | 45.0% | |
TTGGGATTACTTGGAGCAGT+AGG | + | chr3.1:77282351-77282370 | MS.gene06353:CDS | 45.0% | |
! | ACATGAGTCTTTTCCTCCTG+AGG | - | chr3.1:77281221-77281240 | None:intergenic | 45.0% |
! | TACTTGGAGCAGTAGGGTTT+TGG | + | chr3.1:77282358-77282377 | MS.gene06353:CDS | 45.0% |
! | TGCATGGGTTATGCAGCATT+TGG | + | chr3.1:77282030-77282049 | MS.gene06353:CDS | 45.0% |
!! | AGGAGTGTTGTCGTTAGCAT+GGG | + | chr3.1:77279789-77279808 | MS.gene06353:CDS | 45.0% |
!!! | AAACTGGTTTTGGCTGAGAC+AGG | + | chr3.1:77281167-77281186 | MS.gene06353:intron | 45.0% |
!!! | AACTGGTTTTGGCTGAGACA+GGG | + | chr3.1:77281168-77281187 | MS.gene06353:intron | 45.0% |
!!! | TTATTTATTGATTTAATAAA+GGG | - | chr3.1:77281004-77281023 | None:intergenic | 5.0% |
!!! | TTTATTTATTGATTTAATAA+AGG | - | chr3.1:77281005-77281024 | None:intergenic | 5.0% |
AGAAGGGTTGCGCGTATACT+TGG | - | chr3.1:77282155-77282174 | None:intergenic | 50.0% | |
AGCATGGGCAATAGCTCAGT+TGG | + | chr3.1:77279804-77279823 | MS.gene06353:CDS | 50.0% | |
AGGCTATGTTGCCAAGAGCT+TGG | - | chr3.1:77281582-77281601 | None:intergenic | 50.0% | |
CATTTGGAGACACAGCACCA+GGG | + | chr3.1:77282046-77282065 | MS.gene06353:CDS | 50.0% | |
CTAGCAGTTGCCAAAGTTGC+AGG | + | chr3.1:77281382-77281401 | MS.gene06353:CDS | 50.0% | |
CTTTGGCAACTGCTAGACCA+AGG | - | chr3.1:77281378-77281397 | None:intergenic | 50.0% | |
GACTGTTTGCATTCCTCAGG+AGG | + | chr3.1:77281205-77281224 | MS.gene06353:CDS | 50.0% | |
GCATGGGCAATAGCTCAGTT+GGG | + | chr3.1:77279805-77279824 | MS.gene06353:CDS | 50.0% | |
GGAAGCTGTTCACACCATTC+TGG | + | chr3.1:77279951-77279970 | MS.gene06353:CDS | 50.0% | |
GGCAATAGCTCAGTTGGGTT+GGG | + | chr3.1:77279810-77279829 | MS.gene06353:CDS | 50.0% | |
TCCTGTAAGGCTACCCTTGA+AGG | - | chr3.1:77281512-77281531 | None:intergenic | 50.0% | |
TGGGGAACTTTCCAAGCTCT+TGG | + | chr3.1:77281568-77281587 | MS.gene06353:CDS | 50.0% | |
! | TCCTTCAAGGGTAGCCTTAC+AGG | + | chr3.1:77281508-77281527 | MS.gene06353:CDS | 50.0% |
!! | CAGGAGTGTTGTCGTTAGCA+TGG | + | chr3.1:77279788-77279807 | MS.gene06353:CDS | 50.0% |
GCACCAGGGAACTTACTCAC+TGG | + | chr3.1:77282060-77282079 | MS.gene06353:CDS | 55.0% | |
GCATTTGGAGACACAGCACC+AGG | + | chr3.1:77282045-77282064 | MS.gene06353:CDS | 55.0% | |
GGGCAATAGCTCAGTTGGGT+TGG | + | chr3.1:77279809-77279828 | MS.gene06353:CDS | 55.0% | |
TGTGGCTGTTGTTGGGTCAG+TGG | + | chr3.1:77282497-77282516 | MS.gene06353:CDS | 55.0% | |
!! | GCTCAGTTGGGTTGGGTGAT+TGG | + | chr3.1:77279817-77279836 | MS.gene06353:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 77279476 | 77282572 | 77279476 | ID=MS.gene06353 |
chr3.1 | mRNA | 77279476 | 77282572 | 77279476 | ID=MS.gene06353.t1;Parent=MS.gene06353 |
chr3.1 | exon | 77279476 | 77279563 | 77279476 | ID=MS.gene06353.t1.exon1;Parent=MS.gene06353.t1 |
chr3.1 | CDS | 77279476 | 77279563 | 77279476 | ID=cds.MS.gene06353.t1;Parent=MS.gene06353.t1 |
chr3.1 | exon | 77279740 | 77279973 | 77279740 | ID=MS.gene06353.t1.exon2;Parent=MS.gene06353.t1 |
chr3.1 | CDS | 77279740 | 77279973 | 77279740 | ID=cds.MS.gene06353.t1;Parent=MS.gene06353.t1 |
chr3.1 | exon | 77280405 | 77280498 | 77280405 | ID=MS.gene06353.t1.exon3;Parent=MS.gene06353.t1 |
chr3.1 | CDS | 77280405 | 77280498 | 77280405 | ID=cds.MS.gene06353.t1;Parent=MS.gene06353.t1 |
chr3.1 | exon | 77281189 | 77281403 | 77281189 | ID=MS.gene06353.t1.exon4;Parent=MS.gene06353.t1 |
chr3.1 | CDS | 77281189 | 77281403 | 77281189 | ID=cds.MS.gene06353.t1;Parent=MS.gene06353.t1 |
chr3.1 | exon | 77281500 | 77281639 | 77281500 | ID=MS.gene06353.t1.exon5;Parent=MS.gene06353.t1 |
chr3.1 | CDS | 77281500 | 77281639 | 77281500 | ID=cds.MS.gene06353.t1;Parent=MS.gene06353.t1 |
chr3.1 | exon | 77281934 | 77282572 | 77281934 | ID=MS.gene06353.t1.exon6;Parent=MS.gene06353.t1 |
chr3.1 | CDS | 77281934 | 77282572 | 77281934 | ID=cds.MS.gene06353.t1;Parent=MS.gene06353.t1 |
Gene Sequence |
Protein sequence |