Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063839.t1 | XP_003628014.1 | 97 | 305 | 9 | 0 | 1 | 305 | 1 | 305 | 5.30E-126 | 460.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063839.t1 | Q14919 | 58.0 | 88 | 37 | 0 | 2 | 89 | 5 | 92 | 3.3e-23 | 110.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063839.t1 | G7LID3 | 97.0 | 305 | 9 | 0 | 1 | 305 | 1 | 305 | 3.8e-126 | 460.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene063839.t1 | TF | NF-YC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063839 | MS.gene42075 | PPI |
| MS.gene063839 | MS.gene82237 | PPI |
| MS.gene063839 | MS.gene48819 | PPI |
| MS.gene76728 | MS.gene063839 | PPI |
| MS.gene87743 | MS.gene063839 | PPI |
| MS.gene87064 | MS.gene063839 | PPI |
| MS.gene77045 | MS.gene063839 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063839.t1 | MTR_8g041420 | 97.377 | 305 | 8 | 0 | 1 | 305 | 1 | 305 | 0.0 | 615 |
| MS.gene063839.t1 | MTR_3g012030 | 68.475 | 295 | 77 | 5 | 1 | 294 | 1 | 280 | 1.27e-126 | 363 |
| MS.gene063839.t1 | MTR_3g012030 | 66.547 | 278 | 77 | 5 | 18 | 294 | 1 | 263 | 4.58e-113 | 328 |
| MS.gene063839.t1 | MTR_3g012030 | 60.256 | 234 | 77 | 5 | 62 | 294 | 1 | 219 | 3.54e-78 | 238 |
| MS.gene063839.t1 | MTR_5g088760 | 45.902 | 305 | 138 | 7 | 1 | 293 | 1 | 290 | 1.19e-65 | 208 |
| MS.gene063839.t1 | MTR_5g088760 | 44.218 | 294 | 137 | 7 | 12 | 293 | 3 | 281 | 3.79e-57 | 186 |
| MS.gene063839.t1 | MTR_5g088760 | 43.056 | 288 | 137 | 7 | 18 | 293 | 1 | 273 | 5.84e-53 | 175 |
| MS.gene063839.t1 | MTR_2g023340 | 38.202 | 89 | 52 | 1 | 1 | 86 | 75 | 163 | 1.04e-11 | 64.3 |
| MS.gene063839.t1 | MTR_3g099180 | 37.975 | 79 | 49 | 0 | 8 | 86 | 55 | 133 | 1.32e-11 | 63.5 |
| MS.gene063839.t1 | MTR_3g099180 | 37.975 | 79 | 49 | 0 | 8 | 86 | 55 | 133 | 1.37e-11 | 63.5 |
| MS.gene063839.t1 | MTR_1g082660 | 37.179 | 78 | 49 | 0 | 9 | 86 | 102 | 179 | 1.72e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063839.t1 | AT3G12480 | 47.078 | 308 | 123 | 8 | 1 | 294 | 1 | 282 | 1.29e-70 | 221 |
| MS.gene063839.t1 | AT5G19490 | 62.319 | 138 | 43 | 3 | 1 | 137 | 1 | 130 | 4.50e-51 | 169 |
| MS.gene063839.t1 | AT1G54830 | 38.462 | 78 | 48 | 0 | 9 | 86 | 71 | 148 | 5.38e-12 | 64.7 |
| MS.gene063839.t1 | AT1G54830 | 38.462 | 78 | 48 | 0 | 9 | 86 | 71 | 148 | 5.38e-12 | 64.7 |
| MS.gene063839.t1 | AT1G54830 | 38.462 | 78 | 48 | 0 | 9 | 86 | 71 | 148 | 5.38e-12 | 64.7 |
| MS.gene063839.t1 | AT5G63470 | 37.975 | 79 | 49 | 0 | 8 | 86 | 78 | 156 | 1.21e-11 | 63.9 |
| MS.gene063839.t1 | AT5G63470 | 37.975 | 79 | 49 | 0 | 8 | 86 | 78 | 156 | 1.21e-11 | 63.9 |
| MS.gene063839.t1 | AT3G48590 | 37.975 | 79 | 49 | 0 | 8 | 86 | 65 | 143 | 1.30e-11 | 63.9 |
| MS.gene063839.t1 | AT1G08970 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.32e-11 | 63.5 |
| MS.gene063839.t1 | AT1G08970 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.32e-11 | 63.5 |
| MS.gene063839.t1 | AT1G08970 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.32e-11 | 63.5 |
| MS.gene063839.t1 | AT1G08970 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.32e-11 | 63.5 |
| MS.gene063839.t1 | AT1G56170 | 38.462 | 78 | 48 | 0 | 9 | 86 | 77 | 154 | 5.00e-11 | 61.6 |
| MS.gene063839.t1 | AT1G56170 | 38.462 | 78 | 48 | 0 | 9 | 86 | 77 | 154 | 5.00e-11 | 61.6 |
Find 86 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGTATCTGTAGTATTT+TGG | 0.175216 | 8.1:-62882084 | None:intergenic |
| TGGCATTCAGATCAATATTA+AGG | 0.272737 | 8.1:-62882189 | None:intergenic |
| AGAACAACAACATTATTCTT+TGG | 0.303752 | 8.1:-62882142 | None:intergenic |
| CAGTCATCATGAAGAAATTC+CGG | 0.308338 | 8.1:+62882333 | MS.gene063839:CDS |
| TCACAAATGCAATGAATTCA+TGG | 0.326874 | 8.1:-62880559 | None:intergenic |
| GAACGAAAATGATGACAAAA+AGG | 0.328849 | 8.1:+62882216 | MS.gene063839:CDS |
| CCTTCTATTCCAGCTGGAGT+TGG | 0.344695 | 8.1:+62881922 | MS.gene063839:intron |
| GGTATCGAGCTTCTTCTTCA+TGG | 0.346522 | 8.1:-62879210 | None:intergenic |
| GGCTTCAGTATTAGCGGCTT+CGG | 0.351132 | 8.1:-62882272 | None:intergenic |
| GCTTCAGTATTAGCGGCTTC+GGG | 0.385103 | 8.1:-62882271 | None:intergenic |
| CTTCTATTCCAGCTGGAGTT+GGG | 0.408025 | 8.1:+62881923 | MS.gene063839:intron |
| AGGGGAAGAGGCCGAGGTAG+AGG | 0.414973 | 8.1:+62881965 | MS.gene063839:CDS |
| AGCAACTCACAAACTAAAAC+AGG | 0.424990 | 8.1:-62880382 | None:intergenic |
| CCATGACCATGGCCGTAGTC+AGG | 0.439112 | 8.1:-62881260 | None:intergenic |
| CATCCATCCGCGTACCAAGC+TGG | 0.440407 | 8.1:-62882408 | None:intergenic |
| TCATGATGACTGCTGTCTGT+TGG | 0.443464 | 8.1:-62882322 | None:intergenic |
| CAGCACCACCAGCATCAGTA+TGG | 0.445315 | 8.1:-62881283 | None:intergenic |
| AGAGGCCGAGGTAGAGGAAG+AGG | 0.445372 | 8.1:+62881971 | MS.gene063839:CDS |
| AATACTCACAGCAGGGAAAC+GGG | 0.451379 | 8.1:-62879231 | None:intergenic |
| ATCCATCCGCGTACCAAGCT+GGG | 0.458806 | 8.1:-62882407 | None:intergenic |
| AGTCATCATGAAGAAATTCC+GGG | 0.458892 | 8.1:+62882334 | MS.gene063839:CDS |
| CGAGGTAGAGGAAGAGGAAG+AGG | 0.463525 | 8.1:+62881977 | MS.gene063839:CDS |
| ACAAATGTGGCTATACTTGA+TGG | 0.465433 | 8.1:+62882100 | MS.gene063839:CDS |
| ATTCATTACAGCTAAAGCTC+TGG | 0.468617 | 8.1:+62880473 | MS.gene063839:intron |
| CGGCCTCTTCCCCTACCAGT+AGG | 0.471290 | 8.1:-62881956 | None:intergenic |
| AGAGGAAGAGGACGAGGTCG+AGG | 0.473350 | 8.1:+62881989 | MS.gene063839:CDS |
| AAATACTCACAGCAGGGAAA+CGG | 0.474814 | 8.1:-62879232 | None:intergenic |
| GATGAAGATTATGACGAGGA+AGG | 0.488495 | 8.1:+62882436 | MS.gene063839:CDS |
| TGATGACTGCTGTCTGTTGG+AGG | 0.488755 | 8.1:-62882319 | None:intergenic |
| ATGAAATAACTCTTCAAAGA+GGG | 0.491656 | 8.1:+62880529 | MS.gene063839:CDS |
| GGCAAGCTGCATCGAATCAA+TGG | 0.495075 | 8.1:-62882386 | None:intergenic |
| TGCCCAGCTTGGTACGCGGA+TGG | 0.505678 | 8.1:+62882405 | MS.gene063839:CDS |
| CCTGACTACGGCCATGGTCA+TGG | 0.507215 | 8.1:+62881260 | MS.gene063839:CDS |
| CCTTTCTGAGGTGGACAAGA+TGG | 0.513246 | 8.1:+62882363 | MS.gene063839:CDS |
| TTGGGCCACACTAGCCCTAC+TGG | 0.515489 | 8.1:+62881941 | MS.gene063839:CDS |
| GCTTGGTACGCGGATGGATG+AGG | 0.516299 | 8.1:+62882411 | MS.gene063839:CDS |
| AGCCCTACTGGTAGGGGAAG+AGG | 0.516467 | 8.1:+62881953 | MS.gene063839:CDS |
| CCACACTAGCCCTACTGGTA+GGG | 0.519565 | 8.1:+62881946 | MS.gene063839:CDS |
| TCCGGGCTGGTCCCTTTCTG+AGG | 0.520532 | 8.1:+62882351 | MS.gene063839:CDS |
| TAATGTATTTGACTTTCTGA+AGG | 0.523769 | 8.1:+62881220 | MS.gene063839:CDS |
| GGGCTGGTCCCTTTCTGAGG+TGG | 0.523889 | 8.1:+62882354 | MS.gene063839:CDS |
| GTCAGCAAGGTTCCTGACTA+CGG | 0.534254 | 8.1:+62881248 | MS.gene063839:CDS |
| TGGCTAACTTGCTGAACAGA+AGG | 0.535919 | 8.1:-62882064 | None:intergenic |
| CCCTACCAGTAGGGCTAGTG+TGG | 0.536396 | 8.1:-62881946 | None:intergenic |
| CCATCTTGTCCACCTCAGAA+AGG | 0.536812 | 8.1:-62882363 | None:intergenic |
| TCGATGCAGCTTGCCCAGCT+TGG | 0.538063 | 8.1:+62882394 | MS.gene063839:CDS |
| AGTGATTCAGAGTTATCAGC+AGG | 0.540331 | 8.1:-62882166 | None:intergenic |
| ACTGGTAGGGGAAGAGGCCG+AGG | 0.543075 | 8.1:+62881959 | MS.gene063839:CDS |
| GTTGGAGGAGGTTCAGACAC+GGG | 0.543522 | 8.1:-62882304 | None:intergenic |
| ATGCAAGCTGATGAAGATGT+TGG | 0.543982 | 8.1:+62880340 | MS.gene063839:CDS |
| CATCTTGTCCACCTCAGAAA+GGG | 0.544706 | 8.1:-62882362 | None:intergenic |
| CAGTGATGAAGAAGCTAAGA+GGG | 0.545305 | 8.1:+62881444 | MS.gene063839:CDS |
| TGACTGCTGTCTGTTGGAGG+AGG | 0.548420 | 8.1:-62882316 | None:intergenic |
| GGTCATGGCCATACTGATGC+TGG | 0.551049 | 8.1:+62881275 | MS.gene063839:CDS |
| CTCTTCCTCTTCCTCTACCT+CGG | 0.552926 | 8.1:-62881976 | None:intergenic |
| CATGTTTGCAGGAAAGCTGC+AGG | 0.556670 | 8.1:+62881406 | MS.gene063839:intron |
| ACAGTGATGAAGAAGCTAAG+AGG | 0.558884 | 8.1:+62881443 | MS.gene063839:CDS |
| AGGAAAGCTGCAGGTGATGA+TGG | 0.561033 | 8.1:+62881415 | MS.gene063839:intron |
| ATGAAGATTATGACGAGGAA+GGG | 0.569841 | 8.1:+62882437 | MS.gene063839:CDS |
| TGTTGGAGGAGGTTCAGACA+CGG | 0.578202 | 8.1:-62882305 | None:intergenic |
| ATTAGCGGCTTCAGTATTAG+CGG | 0.582759 | 8.1:-62882278 | None:intergenic |
| GGCCTCTTCCCCTACCAGTA+GGG | 0.586705 | 8.1:-62881955 | None:intergenic |
| AGAGGAAGAGGAAGAGGACG+AGG | 0.587613 | 8.1:+62881983 | MS.gene063839:CDS |
| TTGGAGGAGGTTCAGACACG+GGG | 0.590029 | 8.1:-62882303 | None:intergenic |
| ATTAGCGGCTTCGGGATTAG+CGG | 0.591214 | 8.1:-62882263 | None:intergenic |
| CACACTAGCCCTACTGGTAG+GGG | 0.591865 | 8.1:+62881947 | MS.gene063839:CDS |
| ATCATGAAGAAATTCCGGGC+TGG | 0.593923 | 8.1:+62882338 | MS.gene063839:CDS |
| ACCTCAGAAAGGGACCAGCC+CGG | 0.596293 | 8.1:-62882352 | None:intergenic |
| TATGAAATAACTCTTCAAAG+AGG | 0.600363 | 8.1:+62880528 | MS.gene063839:CDS |
| AGAAGCTAAGAGGGGCAAGA+TGG | 0.603158 | 8.1:+62881453 | MS.gene063839:CDS |
| TGAAATAACTCTTCAAAGAG+GGG | 0.609065 | 8.1:+62880530 | MS.gene063839:CDS |
| AAGGTTCCTGACTACGGCCA+TGG | 0.610732 | 8.1:+62881254 | MS.gene063839:CDS |
| AGCTTGCCCAGCTTGGTACG+CGG | 0.612129 | 8.1:+62882401 | MS.gene063839:CDS |
| TCTGAAGGATGTAGTCAGCA+AGG | 0.625572 | 8.1:+62881235 | MS.gene063839:CDS |
| GAAGAGTTATTTCATAAGTG+CGG | 0.628887 | 8.1:-62880521 | None:intergenic |
| CATCAGTATGGCCATGACCA+TGG | 0.644405 | 8.1:-62881271 | None:intergenic |
| GCCACACTAGCCCTACTGGT+AGG | 0.654203 | 8.1:+62881945 | MS.gene063839:CDS |
| GGAGGAGGTTCAGACACGGG+GGG | 0.656888 | 8.1:-62882301 | None:intergenic |
| TTTCATAAGTGCGGTCACAA+AGG | 0.658401 | 8.1:-62880512 | None:intergenic |
| CATGGCCATACTGATGCTGG+TGG | 0.661901 | 8.1:+62881278 | MS.gene063839:CDS |
| AGATGTTGGAAAGATAGCAT+TGG | 0.667342 | 8.1:+62880354 | MS.gene063839:CDS |
| AAATACTACAGATACAAATG+TGG | 0.667589 | 8.1:+62882087 | MS.gene063839:CDS |
| GGATGATGAAGATTATGACG+AGG | 0.679714 | 8.1:+62882432 | MS.gene063839:CDS |
| ACTTGCTGAACAGAAGGACA+AGG | 0.703007 | 8.1:-62882058 | None:intergenic |
| TGGAGGAGGTTCAGACACGG+GGG | 0.707385 | 8.1:-62882302 | None:intergenic |
| AGTGATGAAGAAGCTAAGAG+GGG | 0.724764 | 8.1:+62881445 | MS.gene063839:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTAAGATAACATTTTT+TGG | + | chr8.1:62879388-62879407 | MS.gene063839:intron | 10.0% |
| !!! | TTTAATTTTAACCTAATTTT+TGG | + | chr8.1:62879598-62879617 | MS.gene063839:intron | 10.0% |
| !!! | TACTTTTACTTCATTTTATT+TGG | + | chr8.1:62879556-62879575 | MS.gene063839:intron | 15.0% |
| !!! | TGAGTATATTTTTATTATGT+GGG | + | chr8.1:62879317-62879336 | MS.gene063839:intron | 15.0% |
| !!! | TTAATTTTGACCTAATTTTT+GGG | + | chr8.1:62879421-62879440 | MS.gene063839:intron | 15.0% |
| !!! | TTGAGTATATTTTTATTATG+TGG | + | chr8.1:62879316-62879335 | MS.gene063839:intron | 15.0% |
| !!! | TTTAATTTTGACCTAATTTT+TGG | + | chr8.1:62879420-62879439 | MS.gene063839:intron | 15.0% |
| !!! | TTTGTTATTTTTTACTGTTT+TGG | + | chr8.1:62879286-62879305 | MS.gene063839:intron | 15.0% |
| !! | AACAAAAAAGATCAAAACTT+TGG | - | chr8.1:62879272-62879291 | None:intergenic | 20.0% |
| !! | AAGTACAATATCCAAAAATT+AGG | - | chr8.1:62879612-62879631 | None:intergenic | 20.0% |
| !! | ATATTCACACTTACAAAAAT+GGG | - | chr8.1:62880619-62880638 | None:intergenic | 20.0% |
| !! | CTGTGATTTAAATTATTTGA+CGG | + | chr8.1:62880101-62880120 | MS.gene063839:intron | 20.0% |
| !! | GTGTTTAAGAAATTAAAACA+CGG | - | chr8.1:62881513-62881532 | None:intergenic | 20.0% |
| !! | TAGTTAAAATTAATCAGTTC+AGG | - | chr8.1:62881061-62881080 | None:intergenic | 20.0% |
| !! | TCAAATCAAATTGTCTAAAA+AGG | - | chr8.1:62880809-62880828 | None:intergenic | 20.0% |
| !! | TGTTTAAGAAATTAAAACAC+GGG | - | chr8.1:62881512-62881531 | None:intergenic | 20.0% |
| !! | TTGAAATTATACTATGTTTG+CGG | + | chr8.1:62880181-62880200 | MS.gene063839:intron | 20.0% |
| !! | TTTATGTGCTTAATTGTATT+TGG | + | chr8.1:62879356-62879375 | MS.gene063839:intron | 20.0% |
| !!! | ATATACAACCTTGTTTTTTA+TGG | - | chr8.1:62881601-62881620 | None:intergenic | 20.0% |
| !!! | TCATTTTATTTGGTAGTTTT+TGG | + | chr8.1:62879566-62879585 | MS.gene063839:intron | 20.0% |
| !!! | TGAAAGTATTGTTGTAATTT+GGG | - | chr8.1:62881642-62881661 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTATGGAGAAAAA+AGG | - | chr8.1:62881591-62881610 | None:intergenic | 20.0% |
| !!! | TTTTATTGAACATGTGAAAA+TGG | + | chr8.1:62880833-62880852 | MS.gene063839:intron | 20.0% |
| !!! | TTTTTTCTCCATAAAAAACA+AGG | + | chr8.1:62881590-62881609 | MS.gene063839:intron | 20.0% |
| ! | AAATACTACAGATACAAATG+TGG | + | chr8.1:62882087-62882106 | MS.gene063839:CDS | 25.0% |
| ! | AATAAATAGAATACTCGAAC+AGG | - | chr8.1:62881094-62881113 | None:intergenic | 25.0% |
| ! | AATCCAAACAAATCCAAAAT+TGG | - | chr8.1:62880080-62880099 | None:intergenic | 25.0% |
| ! | AGAACAACAACATTATTCTT+TGG | - | chr8.1:62882145-62882164 | None:intergenic | 25.0% |
| ! | ATGAAATAACTCTTCAAAGA+GGG | + | chr8.1:62880529-62880548 | MS.gene063839:CDS | 25.0% |
| ! | ATTTGTCGAAATTTCATGTT+TGG | + | chr8.1:62881680-62881699 | MS.gene063839:intron | 25.0% |
| ! | CATATTCACACTTACAAAAA+TGG | - | chr8.1:62880620-62880639 | None:intergenic | 25.0% |
| ! | CATCATAAAACCCAAAAATT+AGG | - | chr8.1:62879434-62879453 | None:intergenic | 25.0% |
| ! | GTTTAAGAAATTAAAACACG+GGG | - | chr8.1:62881511-62881530 | None:intergenic | 25.0% |
| ! | TAAAAAGGAAAACATCTAGA+AGG | - | chr8.1:62880794-62880813 | None:intergenic | 25.0% |
| ! | TAACTACATGTATATCAGAA+AGG | - | chr8.1:62881371-62881390 | None:intergenic | 25.0% |
| ! | TATGAAATAACTCTTCAAAG+AGG | + | chr8.1:62880528-62880547 | MS.gene063839:CDS | 25.0% |
| ! | TGAACCTAAAAATTTCATGT+TGG | + | chr8.1:62879873-62879892 | MS.gene063839:intron | 25.0% |
| ! | TGTTGAAGATAAAATGTGTT+AGG | - | chr8.1:62881136-62881155 | None:intergenic | 25.0% |
| ! | TTCTAATATCTGTTCTTGTA+TGG | + | chr8.1:62880964-62880983 | MS.gene063839:intron | 25.0% |
| !! | AACTCCAACATGAAATTTTT+AGG | - | chr8.1:62879880-62879899 | None:intergenic | 25.0% |
| !! | AATTTCATGTTTGGAATACT+TGG | + | chr8.1:62881689-62881708 | MS.gene063839:intron | 25.0% |
| !! | CATTTGTATCTGTAGTATTT+TGG | - | chr8.1:62882087-62882106 | None:intergenic | 25.0% |
| !! | TAATGTATTTGACTTTCTGA+AGG | + | chr8.1:62881220-62881239 | MS.gene063839:CDS | 25.0% |
| !! | TGTTTGAAACATAAATTTGC+AGG | + | chr8.1:62880300-62880319 | MS.gene063839:intron | 25.0% |
| !!! | AATTGCTTTTTCCTAGAATA+AGG | - | chr8.1:62881873-62881892 | None:intergenic | 25.0% |
| !!! | ATGCTTGATTATTGATTTGA+TGG | + | chr8.1:62879659-62879678 | MS.gene063839:intron | 25.0% |
| !!! | GTGAAAGTATTGTTGTAATT+TGG | - | chr8.1:62881643-62881662 | None:intergenic | 25.0% |
| !!! | TGAGTGATGTTATCATTTTT+TGG | + | chr8.1:62879686-62879705 | MS.gene063839:intron | 25.0% |
| !!! | TGCTTGATTATTGATTTGAT+GGG | + | chr8.1:62879660-62879679 | MS.gene063839:intron | 25.0% |
| AAATCCAAAATTGGTCCTAA+GGG | - | chr8.1:62880071-62880090 | None:intergenic | 30.0% | |
| ACATGAAATTTCGACAAATG+AGG | - | chr8.1:62881679-62881698 | None:intergenic | 30.0% | |
| AGCTTGATTAATGAAGTTGA+TGG | + | chr8.1:62879458-62879477 | MS.gene063839:intron | 30.0% | |
| ATAAAATGTGTTAGGAAGGA+AGG | - | chr8.1:62881128-62881147 | None:intergenic | 30.0% | |
| ATGCTTGATCAAATAATGCA+CGG | + | chr8.1:62881024-62881043 | MS.gene063839:intron | 30.0% | |
| ATTCATTCCTACAAGATTTC+AGG | - | chr8.1:62881810-62881829 | None:intergenic | 30.0% | |
| GAACGAAAATGATGACAAAA+AGG | + | chr8.1:62882216-62882235 | MS.gene063839:CDS | 30.0% | |
| GAAGATAAAATGTGTTAGGA+AGG | - | chr8.1:62881132-62881151 | None:intergenic | 30.0% | |
| TAAGCCAAACAGCTAAAAAA+AGG | - | chr8.1:62879914-62879933 | None:intergenic | 30.0% | |
| TCAAACAATTCACAAGGATT+TGG | - | chr8.1:62880937-62880956 | None:intergenic | 30.0% | |
| TCACAAATGCAATGAATTCA+TGG | - | chr8.1:62880562-62880581 | None:intergenic | 30.0% | |
| TCATATAAGCATCATATCTG+TGG | - | chr8.1:62880148-62880167 | None:intergenic | 30.0% | |
| TGAAATAACTCTTCAAAGAG+GGG | + | chr8.1:62880530-62880549 | MS.gene063839:CDS | 30.0% | |
| TGGCATTCAGATCAATATTA+AGG | - | chr8.1:62882192-62882211 | None:intergenic | 30.0% | |
| TTAGCTGCTTAGCTTAATTA+TGG | + | chr8.1:62879527-62879546 | MS.gene063839:intron | 30.0% | |
| ! | AACTTTAAGCTACTGATTGT+TGG | + | chr8.1:62880429-62880448 | MS.gene063839:intron | 30.0% |
| ! | AAGACTTCAAACCTTCTTTT+TGG | - | chr8.1:62881323-62881342 | None:intergenic | 30.0% |
| ! | ATTATTTGATCAAGCATTGC+AGG | - | chr8.1:62881021-62881040 | None:intergenic | 30.0% |
| ! | GAAGAGTTATTTCATAAGTG+CGG | - | chr8.1:62880524-62880543 | None:intergenic | 30.0% |
| ! | GCTTGATTAATGAAGTTGAT+GGG | + | chr8.1:62879459-62879478 | MS.gene063839:intron | 30.0% |
| ! | GTCATCATTTTCGTTCATAT+TGG | - | chr8.1:62882212-62882231 | None:intergenic | 30.0% |
| !! | TTCAAACCTTCTTTTTGGAA+TGG | - | chr8.1:62881318-62881337 | None:intergenic | 30.0% |
| !! | TTTTGAGTGATGTGGTATTA+TGG | + | chr8.1:62879482-62879501 | MS.gene063839:intron | 30.0% |
| !!! | GTTACCTTTTTTTAGCTGTT+TGG | + | chr8.1:62879907-62879926 | MS.gene063839:intron | 30.0% |
| AAACAGAAAATACTCACAGC+AGG | - | chr8.1:62879242-62879261 | None:intergenic | 35.0% | |
| AACAGAAAATACTCACAGCA+GGG | - | chr8.1:62879241-62879260 | None:intergenic | 35.0% | |
| AATCCAACATGTGTCAGTAA+TGG | - | chr8.1:62880019-62880038 | None:intergenic | 35.0% | |
| AATTTCATGTTGGAGTTGTG+TGG | + | chr8.1:62879883-62879902 | MS.gene063839:intron | 35.0% | |
| ACAAATGTGGCTATACTTGA+TGG | + | chr8.1:62882100-62882119 | MS.gene063839:CDS | 35.0% | |
| AGACAATCCTGAAATCTTGT+AGG | + | chr8.1:62881800-62881819 | MS.gene063839:intron | 35.0% | |
| AGATGTTGGAAAGATAGCAT+TGG | + | chr8.1:62880354-62880373 | MS.gene063839:CDS | 35.0% | |
| AGCAACTCACAAACTAAAAC+AGG | - | chr8.1:62880385-62880404 | None:intergenic | 35.0% | |
| AGTCATCATGAAGAAATTCC+GGG | + | chr8.1:62882334-62882353 | MS.gene063839:CDS | 35.0% | |
| ATCAGACCATTCCAAAAAGA+AGG | + | chr8.1:62881309-62881328 | MS.gene063839:CDS | 35.0% | |
| ATGAAGATTATGACGAGGAA+GGG | + | chr8.1:62882437-62882456 | MS.gene063839:CDS | 35.0% | |
| ATTCATTACAGCTAAAGCTC+TGG | + | chr8.1:62880473-62880492 | MS.gene063839:intron | 35.0% | |
| CAAATCCAAAATTGGTCCTA+AGG | - | chr8.1:62880072-62880091 | None:intergenic | 35.0% | |
| CACAGTTCAAACAATTCACA+AGG | - | chr8.1:62880943-62880962 | None:intergenic | 35.0% | |
| CAGTCATCATGAAGAAATTC+CGG | + | chr8.1:62882333-62882352 | MS.gene063839:CDS | 35.0% | |
| GAAACATAAATTTGCAGGCT+CGG | + | chr8.1:62880305-62880324 | MS.gene063839:intron | 35.0% | |
| GGGGCTTTCATACTAATATA+AGG | - | chr8.1:62881492-62881511 | None:intergenic | 35.0% | |
| TGAACTCAATTAATCGTCAG+TGG | + | chr8.1:62880672-62880691 | MS.gene063839:intron | 35.0% | |
| TTCTAGTCGTTCCTTATTCT+AGG | + | chr8.1:62881859-62881878 | MS.gene063839:intron | 35.0% | |
| ! | ACAATTCACAAGGATTTGGT+TGG | - | chr8.1:62880933-62880952 | None:intergenic | 35.0% |
| ! | ATCTAATATGAGTCGGTGTT+AGG | - | chr8.1:62879832-62879851 | None:intergenic | 35.0% |
| ! | CTGAGGTATCTAATATGAGT+CGG | - | chr8.1:62879839-62879858 | None:intergenic | 35.0% |
| ! | TTAGCTGTTTGGCTTAGTTT+AGG | + | chr8.1:62879918-62879937 | MS.gene063839:intron | 35.0% |
| ! | TTGTCTTTTGCTTGCACAAA+TGG | - | chr8.1:62881786-62881805 | None:intergenic | 35.0% |
| !! | GGACCAATTTTGGATTTGTT+TGG | + | chr8.1:62880074-62880093 | MS.gene063839:intron | 35.0% |
| !!! | TTTTTTCCTTCTATTCCAGC+TGG | + | chr8.1:62881916-62881935 | MS.gene063839:intron | 35.0% |
| AAATACTCACAGCAGGGAAA+CGG | - | chr8.1:62879235-62879254 | None:intergenic | 40.0% | |
| ACAGTGATGAAGAAGCTAAG+AGG | + | chr8.1:62881443-62881462 | MS.gene063839:CDS | 40.0% | |
| AGGACGAGCTATTCAAAAAG+AGG | + | chr8.1:62882009-62882028 | MS.gene063839:CDS | 40.0% | |
| AGTCTATGATTCCAACCCTT+AGG | + | chr8.1:62880053-62880072 | MS.gene063839:intron | 40.0% | |
| AGTGATGAAGAAGCTAAGAG+GGG | + | chr8.1:62881445-62881464 | MS.gene063839:CDS | 40.0% | |
| AGTGATTCAGAGTTATCAGC+AGG | - | chr8.1:62882169-62882188 | None:intergenic | 40.0% | |
| ATGCAAGCTGATGAAGATGT+TGG | + | chr8.1:62880340-62880359 | MS.gene063839:CDS | 40.0% | |
| ATTAGCGGCTTCAGTATTAG+CGG | - | chr8.1:62882281-62882300 | None:intergenic | 40.0% | |
| CAGTGATGAAGAAGCTAAGA+GGG | + | chr8.1:62881444-62881463 | MS.gene063839:CDS | 40.0% | |
| CTTTCCTGCAAACATGGTTT+AGG | - | chr8.1:62881402-62881421 | None:intergenic | 40.0% | |
| GATCAAATAATGCACGGCTT+GGG | + | chr8.1:62881030-62881049 | MS.gene063839:intron | 40.0% | |
| GATGAAGATTATGACGAGGA+AGG | + | chr8.1:62882436-62882455 | MS.gene063839:CDS | 40.0% | |
| GGACGAGCTATTCAAAAAGA+GGG | + | chr8.1:62882010-62882029 | MS.gene063839:CDS | 40.0% | |
| GGATGATGAAGATTATGACG+AGG | + | chr8.1:62882432-62882451 | MS.gene063839:CDS | 40.0% | |
| TCAAAAAGAGGGACATCATC+AGG | + | chr8.1:62882021-62882040 | MS.gene063839:CDS | 40.0% | |
| TGATCAAATAATGCACGGCT+TGG | + | chr8.1:62881029-62881048 | MS.gene063839:intron | 40.0% | |
| TGTCCATTACTGACACATGT+TGG | + | chr8.1:62880013-62880032 | MS.gene063839:intron | 40.0% | |
| TGTGATTGATGCTGACGAAA+TGG | - | chr8.1:62881545-62881564 | None:intergenic | 40.0% | |
| TTTCATAAGTGCGGTCACAA+AGG | - | chr8.1:62880515-62880534 | None:intergenic | 40.0% | |
| ! | TGGCTGCTTTAGCTTAGTTT+GGG | + | chr8.1:62879706-62879725 | MS.gene063839:intron | 40.0% |
| ! | TTGGCTGCTTTAGCTTAGTT+TGG | + | chr8.1:62879705-62879724 | MS.gene063839:intron | 40.0% |
| !!! | TTGATGGGTTTTGAGTGATG+TGG | + | chr8.1:62879474-62879493 | MS.gene063839:intron | 40.0% |
| AATACTCACAGCAGGGAAAC+GGG | - | chr8.1:62879234-62879253 | None:intergenic | 45.0% | |
| ACCACATTGAGTGTAGCACA+TGG | + | chr8.1:62879773-62879792 | MS.gene063839:intron | 45.0% | |
| ACCATGTGCTACACTCAATG+TGG | - | chr8.1:62879777-62879796 | None:intergenic | 45.0% | |
| ATCATGAAGAAATTCCGGGC+TGG | + | chr8.1:62882338-62882357 | MS.gene063839:CDS | 45.0% | |
| CATCTTGTCCACCTCAGAAA+GGG | - | chr8.1:62882365-62882384 | None:intergenic | 45.0% | |
| CCAAAATTGGTCCTAAGGGT+TGG | - | chr8.1:62880067-62880086 | None:intergenic | 45.0% | |
| CTGACACATGTTGGATTCTC+TGG | + | chr8.1:62880022-62880041 | MS.gene063839:intron | 45.0% | |
| CTTCTATTCCAGCTGGAGTT+GGG | + | chr8.1:62881923-62881942 | MS.gene063839:intron | 45.0% | |
| TCATGATGACTGCTGTCTGT+TGG | - | chr8.1:62882325-62882344 | None:intergenic | 45.0% | |
| TCTGAAGGATGTAGTCAGCA+AGG | + | chr8.1:62881235-62881254 | MS.gene063839:CDS | 45.0% | |
| TGCACCTAAACCATGTTTGC+AGG | + | chr8.1:62881395-62881414 | MS.gene063839:intron | 45.0% | |
| TGTCACATGAGACTGCTCAT+TGG | - | chr8.1:62880879-62880898 | None:intergenic | 45.0% | |
| ! | ACTTGCTGAACAGAAGGACA+AGG | - | chr8.1:62882061-62882080 | None:intergenic | 45.0% |
| ! | CCAACCCTTAGGACCAATTT+TGG | + | chr8.1:62880064-62880083 | MS.gene063839:intron | 45.0% |
| !! | TGGCTAACTTGCTGAACAGA+AGG | - | chr8.1:62882067-62882086 | None:intergenic | 45.0% |
| !! | TGTGTCAGTAATGGACACCT+AGG | - | chr8.1:62880010-62880029 | None:intergenic | 45.0% |
| AGAAGCTAAGAGGGGCAAGA+TGG | + | chr8.1:62881453-62881472 | MS.gene063839:CDS | 50.0% | |
| AGGAAAGCTGCAGGTGATGA+TGG | + | chr8.1:62881415-62881434 | MS.gene063839:intron | 50.0% | |
| ATTAGCGGCTTCGGGATTAG+CGG | - | chr8.1:62882266-62882285 | None:intergenic | 50.0% | |
| CATCAGTATGGCCATGACCA+TGG | - | chr8.1:62881274-62881293 | None:intergenic | 50.0% | |
| CATGTTTGCAGGAAAGCTGC+AGG | + | chr8.1:62881406-62881425 | MS.gene063839:intron | 50.0% | |
| CCAACTCCAGCTGGAATAGA+AGG | - | chr8.1:62881925-62881944 | None:intergenic | 50.0% | |
| CCATCTTGTCCACCTCAGAA+AGG | - | chr8.1:62882366-62882385 | None:intergenic | 50.0% | |
| CCTTCTATTCCAGCTGGAGT+TGG | + | chr8.1:62881922-62881941 | MS.gene063839:intron | 50.0% | |
| CTCTTCCTCTTCCTCTACCT+CGG | - | chr8.1:62881979-62881998 | None:intergenic | 50.0% | |
| CTGCAGCTTTCCTGCAAACA+TGG | - | chr8.1:62881408-62881427 | None:intergenic | 50.0% | |
| GCTTCAGTATTAGCGGCTTC+GGG | - | chr8.1:62882274-62882293 | None:intergenic | 50.0% | |
| GGCAAGCTGCATCGAATCAA+TGG | - | chr8.1:62882389-62882408 | None:intergenic | 50.0% | |
| GGCTTCAGTATTAGCGGCTT+CGG | - | chr8.1:62882275-62882294 | None:intergenic | 50.0% | |
| GTCAGCAAGGTTCCTGACTA+CGG | + | chr8.1:62881248-62881267 | MS.gene063839:CDS | 50.0% | |
| TCACAGACTATGTAGCGCTG+AGG | - | chr8.1:62879856-62879875 | None:intergenic | 50.0% | |
| TGATGACTGCTGTCTGTTGG+AGG | - | chr8.1:62882322-62882341 | None:intergenic | 50.0% | |
| TGTTGGAGGAGGTTCAGACA+CGG | - | chr8.1:62882308-62882327 | None:intergenic | 50.0% | |
| !! | CCTTTCTGAGGTGGACAAGA+TGG | + | chr8.1:62882363-62882382 | MS.gene063839:CDS | 50.0% |
| AAGGTTCCTGACTACGGCCA+TGG | + | chr8.1:62881254-62881273 | MS.gene063839:CDS | 55.0% | |
| AGAGGAAGAGGAAGAGGACG+AGG | + | chr8.1:62881983-62882002 | MS.gene063839:CDS | 55.0% | |
| ATCCATCCGCGTACCAAGCT+GGG | - | chr8.1:62882410-62882429 | None:intergenic | 55.0% | |
| CACACTAGCCCTACTGGTAG+GGG | + | chr8.1:62881947-62881966 | MS.gene063839:CDS | 55.0% | |
| CAGCACCACCAGCATCAGTA+TGG | - | chr8.1:62881286-62881305 | None:intergenic | 55.0% | |
| CAGTGTCGTGTTTCGTGCCT+AGG | + | chr8.1:62879990-62880009 | MS.gene063839:intron | 55.0% | |
| CATGGCCATACTGATGCTGG+TGG | + | chr8.1:62881278-62881297 | MS.gene063839:CDS | 55.0% | |
| CCACACTAGCCCTACTGGTA+GGG | + | chr8.1:62881946-62881965 | MS.gene063839:CDS | 55.0% | |
| CGAGGTAGAGGAAGAGGAAG+AGG | + | chr8.1:62881977-62881996 | MS.gene063839:CDS | 55.0% | |
| GGTCATGGCCATACTGATGC+TGG | + | chr8.1:62881275-62881294 | MS.gene063839:CDS | 55.0% | |
| GTCGTGTCTAGTGTCGTGTC+TGG | + | chr8.1:62879803-62879822 | MS.gene063839:intron | 55.0% | |
| GTTGGAGGAGGTTCAGACAC+GGG | - | chr8.1:62882307-62882326 | None:intergenic | 55.0% | |
| TGACTGCTGTCTGTTGGAGG+AGG | - | chr8.1:62882319-62882338 | None:intergenic | 55.0% | |
| TTCAGACACGGGGGGATTAG+CGG | - | chr8.1:62882296-62882315 | None:intergenic | 55.0% | |
| TTGGAGGAGGTTCAGACACG+GGG | - | chr8.1:62882306-62882325 | None:intergenic | 55.0% | |
| ACCTCAGAAAGGGACCAGCC+CGG | - | chr8.1:62882355-62882374 | None:intergenic | 60.0% | |
| AGAGGAAGAGGACGAGGTCG+AGG | + | chr8.1:62881989-62882008 | MS.gene063839:CDS | 60.0% | |
| AGAGGCCGAGGTAGAGGAAG+AGG | + | chr8.1:62881971-62881990 | MS.gene063839:CDS | 60.0% | |
| AGCCCTACTGGTAGGGGAAG+AGG | + | chr8.1:62881953-62881972 | MS.gene063839:CDS | 60.0% | |
| AGCTTGCCCAGCTTGGTACG+CGG | + | chr8.1:62882401-62882420 | MS.gene063839:CDS | 60.0% | |
| CATCCATCCGCGTACCAAGC+TGG | - | chr8.1:62882411-62882430 | None:intergenic | 60.0% | |
| CCATGACCATGGCCGTAGTC+AGG | - | chr8.1:62881263-62881282 | None:intergenic | 60.0% | |
| CCTGACTACGGCCATGGTCA+TGG | + | chr8.1:62881260-62881279 | MS.gene063839:CDS | 60.0% | |
| GCCACACTAGCCCTACTGGT+AGG | + | chr8.1:62881945-62881964 | MS.gene063839:CDS | 60.0% | |
| GCTTGGTACGCGGATGGATG+AGG | + | chr8.1:62882411-62882430 | MS.gene063839:CDS | 60.0% | |
| GGCCTCTTCCCCTACCAGTA+GGG | - | chr8.1:62881958-62881977 | None:intergenic | 60.0% | |
| TAGTGTGGCCCAACTCCAGC+TGG | - | chr8.1:62881934-62881953 | None:intergenic | 60.0% | |
| TCGATGCAGCTTGCCCAGCT+TGG | + | chr8.1:62882394-62882413 | MS.gene063839:CDS | 60.0% | |
| TGGAGGAGGTTCAGACACGG+GGG | - | chr8.1:62882305-62882324 | None:intergenic | 60.0% | |
| TTGGGCCACACTAGCCCTAC+TGG | + | chr8.1:62881941-62881960 | MS.gene063839:CDS | 60.0% | |
| ! | CCCTACCAGTAGGGCTAGTG+TGG | - | chr8.1:62881949-62881968 | None:intergenic | 60.0% |
| ACTGGTAGGGGAAGAGGCCG+AGG | + | chr8.1:62881959-62881978 | MS.gene063839:CDS | 65.0% | |
| AGGGGAAGAGGCCGAGGTAG+AGG | + | chr8.1:62881965-62881984 | MS.gene063839:CDS | 65.0% | |
| CGGCCTCTTCCCCTACCAGT+AGG | - | chr8.1:62881959-62881978 | None:intergenic | 65.0% | |
| GGAGGAGGTTCAGACACGGG+GGG | - | chr8.1:62882304-62882323 | None:intergenic | 65.0% | |
| TGCCCAGCTTGGTACGCGGA+TGG | + | chr8.1:62882405-62882424 | MS.gene063839:CDS | 65.0% | |
| !! | GGGCTGGTCCCTTTCTGAGG+TGG | + | chr8.1:62882354-62882373 | MS.gene063839:CDS | 65.0% |
| !! | TCCGGGCTGGTCCCTTTCTG+AGG | + | chr8.1:62882351-62882370 | MS.gene063839:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 62879212 | 62882462 | 62879212 | ID=MS.gene063839 |
| chr8.1 | mRNA | 62879212 | 62882462 | 62879212 | ID=MS.gene063839.t1;Parent=MS.gene063839 |
| chr8.1 | exon | 62879212 | 62879244 | 62879212 | ID=MS.gene063839.t1.exon1;Parent=MS.gene063839.t1 |
| chr8.1 | CDS | 62879212 | 62879244 | 62879212 | ID=cds.MS.gene063839.t1;Parent=MS.gene063839.t1 |
| chr8.1 | exon | 62880322 | 62880394 | 62880322 | ID=MS.gene063839.t1.exon2;Parent=MS.gene063839.t1 |
| chr8.1 | CDS | 62880322 | 62880394 | 62880322 | ID=cds.MS.gene063839.t1;Parent=MS.gene063839.t1 |
| chr8.1 | exon | 62880484 | 62880577 | 62880484 | ID=MS.gene063839.t1.exon3;Parent=MS.gene063839.t1 |
| chr8.1 | CDS | 62880484 | 62880577 | 62880484 | ID=cds.MS.gene063839.t1;Parent=MS.gene063839.t1 |
| chr8.1 | exon | 62881199 | 62881330 | 62881199 | ID=MS.gene063839.t1.exon4;Parent=MS.gene063839.t1 |
| chr8.1 | CDS | 62881199 | 62881330 | 62881199 | ID=cds.MS.gene063839.t1;Parent=MS.gene063839.t1 |
| chr8.1 | exon | 62881417 | 62881474 | 62881417 | ID=MS.gene063839.t1.exon5;Parent=MS.gene063839.t1 |
| chr8.1 | CDS | 62881417 | 62881474 | 62881417 | ID=cds.MS.gene063839.t1;Parent=MS.gene063839.t1 |
| chr8.1 | exon | 62881935 | 62882462 | 62881935 | ID=MS.gene063839.t1.exon6;Parent=MS.gene063839.t1 |
| chr8.1 | CDS | 62881935 | 62882462 | 62881935 | ID=cds.MS.gene063839.t1;Parent=MS.gene063839.t1 |
| Gene Sequence |
| Protein sequence |
