AlfalfaGEDB | MS.gene063878

M. sativa cultivar XinJiangDaYe / MS.gene063878

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063878.t1	BAL45202.1	89.3	524	56	0	1	524	1	524	2.80E-276	960.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063878.t1	H1A981	82.4	524	92	0	1	524	1	524	7.8e-259	894.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063878.t1	Q2MJ17	89.3	524	56	0	1	524	1	524	2.0e-276	960.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050226	MS.gene063878	0.801841	7.44E-49	-1.69E-46
MS.gene050227	MS.gene063878	0.80148	8.83E-49	-1.69E-46
MS.gene050623	MS.gene063878	-0.813258	2.80E-51	-1.69E-46
MS.gene050642	MS.gene063878	0.822671	2.09E-53	-1.69E-46
MS.gene051983	MS.gene063878	0.840436	8.71E-58	-1.69E-46
MS.gene052077	MS.gene063878	0.822888	1.86E-53	-1.69E-46
MS.gene054930	MS.gene063878	0.812839	3.46E-51	-1.69E-46
MS.gene055701	MS.gene063878	0.811292	7.53E-51	-1.69E-46
MS.gene056979	MS.gene063878	0.842945	1.90E-58	-1.69E-46
MS.gene059285	MS.gene063878	0.801464	8.90E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene063878.t1	MTR_8g042000	88.931	524	58	0	1	524	1	524	956
MS.gene063878.t1	MTR_8g042020	83.206	524	87	1	1	524	1	523	909
MS.gene063878.t1	MTR_8g042060	81.870	524	95	0	1	524	1	524	904
MS.gene063878.t1	MTR_8g042040	79.771	524	89	1	1	524	1	507	875
MS.gene063878.t1	MTR_8g042060	75.382	524	93	1	1	524	1	488	813
MS.gene063878.t1	MTR_8g042000	88.462	390	45	0	1	390	1	390	724
MS.gene063878.t1	MTR_2g072270	59.351	524	201	4	8	524	5	523	644
MS.gene063878.t1	MTR_2g072340	58.462	520	207	3	8	524	3	516	633
MS.gene063878.t1	MTR_2g072400	57.500	520	212	3	8	524	3	516	623
MS.gene063878.t1	MTR_5g095230	55.684	519	217	6	10	524	5	514	602

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene063878.t1	AT3G14660	54.453	494	213	5	33	524	29	512	558
MS.gene063878.t1	AT3G14690	51.830	519	235	6	11	524	4	512	557
MS.gene063878.t1	AT3G14680	54.251	494	214	5	33	524	29	512	556
MS.gene063878.t1	AT3G14690	51.830	519	235	6	11	524	39	547	556
MS.gene063878.t1	AT3G14640	53.629	496	216	6	33	524	29	514	551
MS.gene063878.t1	AT3G14640	53.629	496	216	6	33	524	51	536	550
MS.gene063878.t1	AT3G14610	52.590	502	225	5	26	524	21	512	548
MS.gene063878.t1	AT3G14650	52.834	494	221	5	33	524	29	512	540
MS.gene063878.t1	AT3G14630	50.291	515	244	5	12	524	59	563	530
MS.gene063878.t1	AT3G14630	50.291	515	244	5	12	524	4	508	529

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Find 108 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCGAAAGGTTTGCTGA+AGG	0.613141	8.1:+61979847	MS.gene063878:CDS
AAAGGATTATTGTCATCAGA+TGG	0.562183	8.1:+61977687	MS.gene063878:CDS
AAATTGTTGAAGAGATGCCA+TGG	0.587822	8.1:-61976174	None:intergenic
AACACCGAAATATTTGGAAA+TGG	0.430294	8.1:-61977444	None:intergenic
AACCAAAATCCAAACTTTGA+AGG	0.476777	8.1:+61979202	MS.gene063878:CDS
AACTTCTTTGGTGAGACCAA+TGG	0.558077	8.1:-61976334	None:intergenic
AAGATTTCCTTAATTTGCTC+AGG	0.384498	8.1:-61977383	None:intergenic
AAGTAGAACTGTTAGAAAAC+AGG	0.419889	8.1:-61976142	None:intergenic
AATATTGGAATGTTCGTGCG+TGG	0.628030	8.1:-61977852	None:intergenic
AATGGATCTTAACTTTGCTT+TGG	0.342611	8.1:-61977426	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAATAACTACTTGCACA+GGG	+	chr8.1:61978377-61978396	MS.gene063878:intron	30.0%
AAAGGATTATTGTCATCAGA+TGG	+	chr8.1:61977687-61977706	MS.gene063878:CDS	30.0%
AACACCGAAATATTTGGAAA+TGG	-	chr8.1:61977447-61977466	None:intergenic	30.0%
AACCAAAATCCAAACTTTGA+AGG	+	chr8.1:61979202-61979221	MS.gene063878:CDS	30.0%
AAGTAGAACTGTTAGAAAAC+AGG	-	chr8.1:61976145-61976164	None:intergenic	30.0%
AATGGATCTTAACTTTGCTT+TGG	-	chr8.1:61977429-61977448	None:intergenic	30.0%
AATTTCATCCAATAAGAGAG+TGG	-	chr8.1:61977939-61977958	None:intergenic	30.0%
AGTTTATATTATCCGATGCA+AGG	+	chr8.1:61976939-61976958	MS.gene063878:intron	30.0%
ATGAATTACTTCATACTGCA+GGG	+	chr8.1:61977615-61977634	MS.gene063878:intron	30.0%
ATGGATCTTAACTTTGCTTT+GGG	-	chr8.1:61977428-61977447	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	61976102	61980092	61976102	ID=MS.gene063878
chr8.1	mRNA	61976102	61980092	61976102	ID=MS.gene063878.t1;Parent=MS.gene063878
chr8.1	exon	61976102	61976402	61976102	ID=MS.gene063878.t1.exon1;Parent=MS.gene063878.t1
chr8.1	CDS	61976102	61976402	61976102	ID=cds.MS.gene063878.t1;Parent=MS.gene063878.t1
chr8.1	exon	61977330	61977547	61977330	ID=MS.gene063878.t1.exon2;Parent=MS.gene063878.t1
chr8.1	CDS	61977330	61977547	61977330	ID=cds.MS.gene063878.t1;Parent=MS.gene063878.t1
chr8.1	exon	61977636	61977877	61977636	ID=MS.gene063878.t1.exon3;Parent=MS.gene063878.t1
chr8.1	CDS	61977636	61977877	61977636	ID=cds.MS.gene063878.t1;Parent=MS.gene063878.t1
chr8.1	exon	61978856	61979243	61978856	ID=MS.gene063878.t1.exon4;Parent=MS.gene063878.t1
chr8.1	CDS	61978856	61979243	61978856	ID=cds.MS.gene063878.t1;Parent=MS.gene063878.t1
chr8.1	exon	61979667	61980092	61979667	ID=MS.gene063878.t1.exon5;Parent=MS.gene063878.t1
chr8.1	CDS	61979667	61980092	61979667	ID=cds.MS.gene063878.t1;Parent=MS.gene063878.t1

Gene Sequence

>MS.gene063878

ATGGAGATGTTTGTGTTTCCCACAACAACAACAATAATCACCTGTTTTCTAACAGTTCTACTTGCTGTGCTTCCATGGCATCTCTTCAACAATTTTTGGCTTAAACCAAAGAGGTTAGAGAAGCTTCTCAAAGCTCAAGGTCTTCAAGGTGAACCATATAACCTTTCAGTATTAAAGGACAAATCAAAACAAAATTATATGTTGAAGTTGCAACAAGAAGATAAATCTAAATCCATTGGTCTCACCAAAGAAGTTGCACCATCTATCTTCTCACCTCTTCATCAAACTGTACAAAAATATGGTACATGTTCTAAATTCCTTTCTAAATGTTCCACAACTAGATTGTAGGTTGAGTTTTGAAACTTCAATTTCGATTGTTATTGATGTTACGTTGAGGATTATGGTCGTCGGGGAATGTATTAATCTCAGCATTACATATATCTTATTGTTTATTTATACTATCTTATAATGGATAGTAACTTGAATTTCTCATTGTTTCTTTGTAATTTCGTAATGAATTTGTTTTAGTAGATTGTAGTAGATACGGCCTCAATTGAGGTCGAAGAAATATAAAAAAATGTTGATGCCGCAATTCAAATCACAGTCACAAACAATTTTAAAAATTTTGTTAGAATTCTTAGAAATCGTGGTTGAGCCTAAAACAACCCCACAAAACCGGCTTGTGAGGTGAGGATTGCCCCCACTTATAAACACATTGTCAGGCCATCTCCTGTCCGATGTTGGACTCTTAACAAGAATATCTCACAAGTTTTATGATGCCCTTGTGGATATACTTGGATAATTGAAAAGAAAAAAAACAGAGTTCAGGAGGAATTTAGTTTATATTATCCGATGCAAGGGCTAAACATGAATGGACTTGGTGTTAATATCAAATCACAAATAGATATCCAGTCTTCCATAAGTTGTTAAAGCCTTTTTTACCAGCCGCTGGAAAAGTCAAGTGTTAAGTATGGTTTGTATTCACTGAGAAGTGGGAAGATTCTCTAGTGTAATAGAGCAAGGAGTAACGAGCGTAGTGGAGTATTTAAGCATATCTTGTACTATGCAATCTTAAGCATTGCTTAATGGAAAATTACAACTGCTACATTGCTCAAAAAGACGTAGACACAATTGATAGAACTTTGTAATCAAGCATTGTATTCTTGTGCGTTTCTCTATCTGTTTACTTTGGAGTAGGGTTTGTTGTTCTAACATAATGGATATGTAGGCAAAAATTCCTTTTTATGGGACGGTACAACACCAAGCGTTATCATCACAGACCCTGAGCAAATTAAGGAAATCTTTAACAAGATGGAGGACTTCCCCAAAGCAAAGTTAAGATCCATTTCCAAATATTTCGGTGTTGGTATAGTACACTATGAGGGTGAGAAATGGGCTAAACATCGAAGGATAGTGAATCCGGCATTCCACATAGAAAAATTGAAAGTAAGGCTATTGCTTTAGTTAATTATTGCAATTTTGTAATTGAATTTCTAATTTTTCGTCTCACAATATGAATTACTTCATACTGCAGGGTATGCTGCCTGCATTTTCTCACAGTTGCAATGAAATGATAAGCAAATGGAAAGGATTATTGTCATCAGATGGAACATGTGAGGTTGATGTTTGGCCTTTCCTTCAGAATTTGACATGTGATGTAATTTCTAGAACAGCATTTGGAAGCAGCTATGCAGAAGGAGCAAAACTATTTCAACTTCTAAAGAAGCAGGCATTTCTTTTGATGACAGGACCACGCACGAACATTCCAATATTGCGGTATGACTATAATAGAGGAATACTAGGGACACTCTTTTTTCAACACTCTCTCTAACACCCACTCTCTTATTGGATGAAATTAATGTATGTCCCACCATTTTAAGTTGAACCCATTTCCAAAGTGTGAAACCCACTTTGATTTAAACCAATAAGGAAGTGAGTATTTAAGAGAGTGTTGCTAGCGCTACTAGACTATAATATATTATTTTGGTACCTTTGACAATAAAAAATTGAAAGCATGTTCTAGTTTGGGAATGACATAAGCATTATATTTATTTACAAAGAAATTAGTCTCTAGTGCAAAATAATATATAAAGTTGCTTACTATGTGATACAATACGATCCAATTCGTGTAGGGTCAGATTCCATAATCTAGAAGGAGAAACTATTCAATTTAGAAAGGGAAATTGATTATTTTTTTATTCATATTCACCATGAGATAATACAATCCTTATATATACTACTAATACATACGCACTATAAGATAACTATAACAATTAAACAATAACTACTTGCACAGGGCCTACTTAATAACTAACTAATATAATATACCTACCTATAACCTCCTAAAATAAACTACCTTAACCATTGTTTTATCATTATCAAGTATCCTATCACTGTGTTTTAAGTTTAATTGTACATAACCAGAAGCGTGTTTGAAAGCAAATGTATGTTGTTAGCCTGCCAATATGCCGGTGTGTGATTGATGTCTACATGTCTGTAGTCTTTGTTGTCTGAATAACATGCTAGACAAAAGAACCATGGGATACAAGAGGTCTAATGTATGACATATACTCTAATTAATTAATGAATGTGCAAGAAGCTTGATTTATAACTAACTCTATGCATTTCCTAAAAAAAAACCTAACTCTAAACATATTTTGTTTTAGTGTATTTCTCATCCCAAGTTATAATATAATAATATTAGACAAGTGCATTCCTTCACATTTAACATCACTAGATAAATGTGTTTTCTAGGCTTCTACCAACAACTACCGAGAGGAGGATGAAAGAAATTGAAAGAGATATCCGTGATTTACTTGAGGGAATCATTAAAAAACGAGAAAAAGCGCTGAAGAATGGTGAATCCACCAACGACGATTTATTAGGCATACTTTTGCAATCAAATCAAGCCGAAAATAAAGGTCATGGAAAAAGTAAGAGTATTGGAATGACCACTCAAGAAGTGATAGATGAATGCAAATTGTTTTACATTGCTGGGCAAGAGACCACCTCAAGTTTGCTGGTTTGGACAATGATGTTATTAGGCAGGTATCCTGAATGGCAAGCACGTGCAAGGGAGGAAGTTTTGCAAGTTTTTGGGAACCAAAATCCAAACTTTGAAGGATTAAGTCAACTTAAAACTGTATGTATTACTTATTCTTATGTTCAAATTACAAATCAAATTTCAAATGATCTTAGCACCTAAAGTTTTGTATCTATCTCTTTTTTTACTGTTATTATTGGGGTGATCTCAAATTTGAGGTTTCTGGTTCGAACCTTGTAAGAAATAAGTCGACCTAGGTAGGATATGAATTGGTATGAATCCCCGCTGGGACCAAGAACCTCCGGAGGGGGTAACTTGTGGAAATTAGGGGAGATCATGTCAATTGTCGAGCGAGATAGATACATAATCTCCCTTATTAATGTCATGTGAAAATTTGACATGAGAAGATAATTTTTAATCACACAATTTCATTTTTTCTTGTTACAACACAATTTCATTTTGATGATTATAAATACATAATCTTTTTTGGTACTATCTGATAATTTTTTTGTTTCCATGTAGGTTACCATGATTTTGTACGAGGTACTAAGGTTATACCCACCTGTAGTTTACTTCACTCGAGCTGTTCAAAAGGATATGAAACTTGGAAAACTTTTGTTGCCCACAGGAACAAATGTTGCCCTACCAATAGTATTGATTCACCAAGATCAAGATCTATGGGGTGATGATGCAAAGGAGTTCAAACCCGAAAGGTTTGCTGAAGGAATTGCGAAGGCAACAAAAGGACAAGTTTCTTATTTCCCTTTTGGATGGGGTCCTAGAATTTGTCTTGGACAAAACTTTGCCTTAGTAGAAGCAAAGATAGCAATTTCATTGCTGCTGCAGAATTTCTCATTCAAACTTTCTCCTAATTATGTGCATGTTCCCACTGCGGTGCTTACTTTGCAGCCAAAAAATGGGGCAAGCACCATTTTGCATAAACTGTAA

Protein sequence

>MS.gene063878.t1

MEMFVFPTTTTIITCFLTVLLAVLPWHLFNNFWLKPKRLEKLLKAQGLQGEPYNLSVLKDKSKQNYMLKLQQEDKSKSIGLTKEVAPSIFSPLHQTVQKYGKNSFLWDGTTPSVIITDPEQIKEIFNKMEDFPKAKLRSISKYFGVGIVHYEGEKWAKHRRIVNPAFHIEKLKGMLPAFSHSCNEMISKWKGLLSSDGTCEVDVWPFLQNLTCDVISRTAFGSSYAEGAKLFQLLKKQAFLLMTGPRTNIPILRLLPTTTERRMKEIERDIRDLLEGIIKKREKALKNGESTNDDLLGILLQSNQAENKGHGKSKSIGMTTQEVIDECKLFYIAGQETTSSLLVWTMMLLGRYPEWQARAREEVLQVFGNQNPNFEGLSQLKTVTMILYEVLRLYPPVVYFTRAVQKDMKLGKLLLPTGTNVALPIVLIHQDQDLWGDDAKEFKPERFAEGIAKATKGQVSYFPFGWGPRICLGQNFALVEAKIAISLLLQNFSFKLSPNYVHVPTAVLTLQPKNGASTILHKL