AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065024

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065024.t1 MTR_1g112630 96.781 466 15 0 6 471 2 467 0.0 945
MS.gene065024.t1 MTR_4g037105 91.759 449 36 1 23 471 18 465 0.0 868
MS.gene065024.t1 MTR_0188s0020 84.152 448 70 1 24 471 25 471 0.0 800
MS.gene065024.t1 MTR_4g115670 60.046 433 169 3 28 459 23 452 0.0 545
MS.gene065024.t1 MTR_3g051240 43.035 402 198 10 54 454 39 410 2.54e-95 295
MS.gene065024.t1 MTR_5g092360 41.452 427 216 12 30 454 22 416 4.19e-95 294
MS.gene065024.t1 MTR_1g060360 41.919 396 202 10 60 454 46 414 1.17e-91 285
MS.gene065024.t1 MTR_7g104330 41.604 399 203 10 58 454 52 422 3.42e-91 284
MS.gene065024.t1 MTR_7g104360 40.250 400 208 11 58 454 45 416 4.11e-87 273
MS.gene065024.t1 MTR_6g013050 31.028 535 261 15 7 449 1 519 2.69e-72 239
MS.gene065024.t1 MTR_3g083810 37.215 395 173 9 115 450 143 521 1.19e-71 236
MS.gene065024.t1 MTR_3g083820 37.215 395 173 9 115 450 143 521 1.57e-70 233
MS.gene065024.t1 MTR_7g056403 35.581 430 194 12 87 450 108 520 4.52e-70 232
MS.gene065024.t1 MTR_6g013050 30.291 515 251 15 7 429 1 499 1.42e-64 218
MS.gene065024.t1 MTR_1g052505 26.716 408 209 16 52 397 183 562 2.86e-29 121
MS.gene065024.t1 MTR_4g037670 28.158 380 201 16 55 397 237 581 8.60e-28 117
MS.gene065024.t1 MTR_4g082930 24.573 468 271 16 39 444 125 572 2.30e-20 94.7
MS.gene065024.t1 MTR_3g074930 25.905 359 219 16 119 444 256 600 8.05e-20 92.8
MS.gene065024.t1 MTR_3g074930 25.905 359 219 16 119 444 249 593 8.78e-20 92.8
MS.gene065024.t1 MTR_4g103520 25.905 359 219 14 119 444 176 520 2.81e-19 90.9
MS.gene065024.t1 MTR_4g103520 25.905 359 219 14 119 444 253 597 3.02e-19 91.3
MS.gene065024.t1 MTR_5g045600 25.405 370 207 14 119 444 245 589 1.63e-18 89.0
MS.gene065024.t1 MTR_8g063080 23.978 367 216 15 119 444 238 582 2.26e-17 85.1
MS.gene065024.t1 MTR_4g082940 25.424 236 149 8 227 444 332 558 6.01e-13 71.6
MS.gene065024.t1 MTR_3g074970 23.276 348 197 12 119 444 198 497 1.64e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065024.t1 AT2G16430 75.699 465 111 2 1 465 1 463 0.0 750
MS.gene065024.t1 AT2G27190 67.756 459 147 1 1 459 1 458 0.0 660
MS.gene065024.t1 AT1G56360 63.496 452 157 4 18 464 10 458 0.0 603
MS.gene065024.t1 AT2G16430 81.121 339 64 0 129 467 7 345 0.0 600
MS.gene065024.t1 AT4G36350 61.842 456 167 4 13 464 6 458 0.0 593
MS.gene065024.t1 AT5G34850 57.048 454 188 4 7 459 4 451 0.0 541
MS.gene065024.t1 AT2G18130 55.580 457 177 6 13 466 8 441 0.0 523
MS.gene065024.t1 AT3G46120 47.174 460 157 10 6 459 2 381 2.66e-136 398
MS.gene065024.t1 AT1G52940 61.789 246 86 6 44 286 1 241 1.91e-105 314
MS.gene065024.t1 AT3G52820 43.182 396 197 11 60 454 47 415 4.08e-94 291
MS.gene065024.t1 AT3G20500 42.462 398 200 9 58 454 45 414 8.14e-93 288
MS.gene065024.t1 AT3G52810 39.421 449 234 12 5 450 2 415 1.05e-90 283
MS.gene065024.t1 AT3G52780 38.789 446 232 12 16 454 5 416 2.68e-85 269
MS.gene065024.t1 AT2G32770 34.353 425 189 10 100 450 122 530 1.09e-66 223
MS.gene065024.t1 AT3G07130 33.929 448 206 12 77 450 80 511 3.01e-66 222
MS.gene065024.t1 AT4G13700 35.904 376 179 12 77 408 80 437 1.54e-60 205
MS.gene065024.t1 AT3G07130 31.601 481 206 13 77 450 80 544 1.07e-59 205
MS.gene065024.t1 AT2G32770 33.002 403 180 10 100 428 41 427 3.43e-58 198
MS.gene065024.t1 AT3G52780 36.096 374 207 12 16 380 5 355 8.93e-56 190
MS.gene065024.t1 AT2G32770 31.294 425 173 11 100 450 122 501 5.29e-53 186
MS.gene065024.t1 AT4G13700 35.366 328 161 11 77 360 80 400 1.19e-48 172
MS.gene065024.t1 AT1G13900 25.541 462 256 18 47 444 132 569 7.33e-23 102
MS.gene065024.t1 AT5G50400 25.281 356 225 14 119 444 165 509 1.21e-19 92.0
MS.gene065024.t1 AT5G50400 25.281 356 225 14 119 444 237 581 1.30e-19 92.4
MS.gene065024.t1 AT2G03450 25.111 450 253 16 58 444 141 569 2.06e-19 91.7
MS.gene065024.t1 AT1G13750 25.824 364 213 14 119 444 239 583 4.32e-18 87.4
MS.gene065024.t1 AT4G24890 28.520 277 159 12 119 364 241 509 2.30e-17 85.5

Find 109 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTGGTTTCGCCAATTTC+TGG 0.125859 1.2:+83360255 None:intergenic
TCACACTACTATAAGGAATT+TGG 0.199886 1.2:-83360613 MS.gene065024:CDS
CACCTAACATTGTCATGATT+TGG 0.223594 1.2:+83360363 None:intergenic
ATTGATTTCGCCCCAGAAAT+TGG 0.247783 1.2:-83360267 MS.gene065024:CDS
GTACTTTGTGATGCTTTATA+AGG 0.272518 1.2:+83360201 None:intergenic
GGCACATCAGGACCAATTTC+AGG 0.281679 1.2:+83360519 None:intergenic
TTTATAACTCCTCCTGAAAT+TGG 0.285563 1.2:-83360531 MS.gene065024:CDS
CACACGTTCGGTTCTTTCAT+AGG 0.290239 1.2:+83359900 None:intergenic
TAGCAACAATCAACATTATA+TGG 0.299454 1.2:-83360004 MS.gene065024:CDS
CACAAAGTACTTCACCCTTT+TGG 0.304317 1.2:-83360188 MS.gene065024:CDS
TTATTCATCACACTACTATA+AGG 0.305033 1.2:-83360620 MS.gene065024:CDS
GTTTCTGTCCTGTTAACTTT+AGG 0.327863 1.2:+83360066 None:intergenic
TGGCTTATCAACCATGGATA+TGG 0.334997 1.2:-83360308 MS.gene065024:CDS
CTGGGGCGAAATCAATTTCA+TGG 0.339164 1.2:+83360274 None:intergenic
GGAACACAACAAGACAGTTT+TGG 0.351168 1.2:-83360554 MS.gene065024:CDS
AGATTCTTCAATTACTCATC+TGG 0.355881 1.2:-83360645 MS.gene065024:CDS
GTTTGGTTTCGCCAATTTCT+GGG 0.356914 1.2:+83360256 None:intergenic
TACTATTATGAGGTTGGACT+TGG 0.361764 1.2:-83360576 MS.gene065024:CDS
ACCTAACATTGTCATGATTT+GGG 0.368249 1.2:+83360364 None:intergenic
GGTCGAACGCAGTGCGCTAC+TGG 0.369778 1.2:-83360722 MS.gene065024:CDS
ACAATGTTAGGTGGGATACT+TGG 0.374862 1.2:-83360353 MS.gene065024:CDS
CGAATAAGGTTTGAATGGTT+TGG 0.378529 1.2:+83360239 None:intergenic
GGGAAAACAGTGTTGTTTGT+TGG 0.380568 1.2:-83360411 MS.gene065024:CDS
GTATAGTATCGGTGCGAATA+AGG 0.383743 1.2:+83360225 None:intergenic
AATTTGGTGTTTGTGTGTAA+TGG 0.386262 1.2:-83360918 MS.gene065024:CDS
AGGAGCTACCTAAAGTTAAC+AGG 0.390499 1.2:-83360074 MS.gene065024:CDS
TAGAAATCAAGATGGTTATT+CGG 0.395276 1.2:-83359662 MS.gene065024:CDS
TGCAATATTCGACACACGTT+CGG 0.401173 1.2:+83359888 None:intergenic
TTTGGTCTCATAGGAGATCT+TGG 0.404619 1.2:-83360489 MS.gene065024:CDS
CCAAATGTGTATGGCACATC+AGG 0.405903 1.2:+83360507 None:intergenic
GCATTCAGAGAGGCTAGCTT+TGG 0.414506 1.2:-83359736 MS.gene065024:CDS
TGGTTATAATGCTCCCCAAC+AGG 0.417531 1.2:-83360814 MS.gene065024:CDS
CCATACACATTTGGTCTCAT+AGG 0.418182 1.2:-83360498 MS.gene065024:CDS
TCCCAAATCATGACAATGTT+AGG 0.419243 1.2:-83360365 MS.gene065024:CDS
TTCAGCTCACATCATTGTCT+TGG 0.421163 1.2:-83360148 MS.gene065024:CDS
CCTGATGTGCCATACACATT+TGG 0.422920 1.2:-83360507 MS.gene065024:CDS
CGGTGCGAATAAGGTTTGAA+TGG 0.426529 1.2:+83360234 None:intergenic
TCTCCAATGGTTATGTATAC+AGG 0.430699 1.2:+83359817 None:intergenic
TTACACAAGGTGATCTTGTT+GGG 0.430973 1.2:-83360785 MS.gene065024:CDS
TGAGCGGTGGAATCATCAAC+TGG 0.432170 1.2:+83359598 None:intergenic
TTGGCCTCGTATTCAGCATA+TGG 0.441264 1.2:-83360129 MS.gene065024:CDS
CAATGTTAGGTGGGATACTT+GGG 0.445086 1.2:-83360352 MS.gene065024:CDS
ATTACACAAGGTGATCTTGT+TGG 0.449022 1.2:-83360786 MS.gene065024:CDS
TGGCTGTGGTTCTGTCATGT+TGG 0.470647 1.2:+83359768 None:intergenic
CGGTTGAGGCTGATTCCCAT+TGG 0.478638 1.2:-83359642 MS.gene065024:CDS
CTTGGGGAAGGTTTGTAGAA+AGG 0.482123 1.2:-83360335 MS.gene065024:CDS
ACAGTACCAATGGCTTGAAC+AGG 0.482376 1.2:-83360094 MS.gene065024:CDS
GGAAAGCAGTGATCGTATCA+TGG 0.483083 1.2:-83360764 MS.gene065024:CDS
ACTAAATACTATTATGAGGT+TGG 0.489189 1.2:-83360582 MS.gene065024:CDS
GGAGATGGAGGGAACCTTGG+AGG 0.490799 1.2:-83359799 MS.gene065024:CDS
GTAGCTCCTGTTCAAGCCAT+TGG 0.495291 1.2:+83360088 None:intergenic
TTGTGTAATATGAACCTGTT+GGG 0.497585 1.2:+83360800 None:intergenic
CCTATGAGACCAAATGTGTA+TGG 0.500434 1.2:+83360498 None:intergenic
AAGGTTGATGTTGTGTATGC+TGG 0.513119 1.2:-83359934 MS.gene065024:CDS
TTAACAGGACAGAAACTCCT+TGG 0.513520 1.2:-83360059 MS.gene065024:CDS
TCAAGATGGTTATTCGGTTG+AGG 0.514507 1.2:-83359656 MS.gene065024:CDS
GCCATGGTTTGTTAAGTACA+AGG 0.515158 1.2:-83359953 MS.gene065024:CDS
ATTGGAGATGGAGGGAACCT+TGG 0.515906 1.2:-83359802 MS.gene065024:CDS
TAGCGCACTGCGTTCGACCC+TGG 0.519503 1.2:+83360726 None:intergenic
AAACAAATGGGTATTTCTCA+AGG 0.519830 1.2:-83360984 None:intergenic
GAACACATGCTCACTATAGC+TGG 0.521332 1.2:-83359687 MS.gene065024:CDS
TGGGTGACCGAGGATGAACC+AGG 0.523413 1.2:-83360744 MS.gene065024:CDS
AACAATCAACATTATATGGA+AGG 0.525860 1.2:-83360000 MS.gene065024:CDS
GTTCGACCCTGGTTCATCCT+CGG 0.543679 1.2:+83360737 None:intergenic
ATTGCATATAATGTTGTGAA+TGG 0.545809 1.2:-83359871 MS.gene065024:CDS
TACATAACCATTGGAGATGG+AGG 0.550025 1.2:-83359811 MS.gene065024:CDS
CAACACTAAATACTATTATG+AGG 0.552300 1.2:-83360586 MS.gene065024:CDS
GCTCCTGTATACATAACCAT+TGG 0.553714 1.2:-83359820 MS.gene065024:CDS
ACAATCAACATTATATGGAA+GGG 0.554284 1.2:-83359999 MS.gene065024:CDS
TCTCTGAATGCTGAGTACTC+TGG 0.561355 1.2:+83359748 None:intergenic
AATGCTGAGTACTCTGGCTG+TGG 0.569296 1.2:+83359754 None:intergenic
TTTCCTACAGTCCATATCCA+TGG 0.573550 1.2:+83360297 None:intergenic
CAAATCATGACAATGTTAGG+TGG 0.575920 1.2:-83360362 MS.gene065024:CDS
TGTTGGTTTCTAAGCCTCCA+AGG 0.576998 1.2:+83359785 None:intergenic
CAATCAACATTATATGGAAG+GGG 0.577345 1.2:-83359998 MS.gene065024:CDS
CAACCATGGATATGGACTGT+AGG 0.580717 1.2:-83360300 MS.gene065024:CDS
AATATACACCACAGTACCAA+TGG 0.587307 1.2:-83360104 MS.gene065024:CDS
TGTTCAAGCCATTGGTACTG+TGG 0.587686 1.2:+83360096 None:intergenic
GTATACATAACCATTGGAGA+TGG 0.590351 1.2:-83359814 MS.gene065024:CDS
TTGGTGTTTGTGTGTAATGG+AGG 0.590798 1.2:-83360915 MS.gene065024:CDS
TTAGGTGGGATACTTGGGGA+AGG 0.593341 1.2:-83360347 MS.gene065024:CDS
AAGGTTCCCTCCATCTCCAA+TGG 0.594309 1.2:+83359804 None:intergenic
CTTTATAAGGAGTATAGTAT+CGG 0.596176 1.2:+83360214 None:intergenic
AAATCATGACAATGTTAGGT+GGG 0.598863 1.2:-83360361 MS.gene065024:CDS
GAAAGCAGTGATCGTATCAT+GGG 0.604171 1.2:-83360763 MS.gene065024:CDS
ACTATTATGAGGTTGGACTT+GGG 0.609032 1.2:-83360575 MS.gene065024:CDS
TTTGGTTTCGCCAATTTCTG+GGG 0.609945 1.2:+83360257 None:intergenic
TTTGTTAGGAATGTTCAGAA+GGG 0.615218 1.2:-83360879 MS.gene065024:CDS
ACCTTGTACTTAACAAACCA+TGG 0.616531 1.2:+83359952 None:intergenic
TGAGAGTAATGTATGAGCCA+TGG 0.618209 1.2:-83359969 MS.gene065024:CDS
AGCTGGCATAGAAATCAAGA+TGG 0.628581 1.2:-83359670 MS.gene065024:CDS
TCAATGGAAAACATGAGCGG+TGG 0.642932 1.2:+83359585 None:intergenic
TGCATTAGAACAATCAACCA+AGG 0.650420 1.2:+83360042 None:intergenic
CTTGTGTAATATGAACCTGT+TGG 0.651645 1.2:+83360799 None:intergenic
ACATAACCATTGGAGATGGA+GGG 0.652593 1.2:-83359810 MS.gene065024:CDS
GGAGCGTGGCTTATCAACCA+TGG 0.653583 1.2:-83360314 MS.gene065024:CDS
TGGGGAGCATTATAACCAGA+AGG 0.658702 1.2:+83360819 None:intergenic
CAACAGGTTCATATTACACA+AGG 0.659532 1.2:-83360798 MS.gene065024:CDS
TTGTTCTAATGCATTCACCA+TGG 0.660660 1.2:-83360032 MS.gene065024:CDS
GATCGTATCATGGGTGACCG+AGG 0.670343 1.2:-83360754 MS.gene065024:CDS
AAGGTTTGTAGAAAGGAGCG+TGG 0.671855 1.2:-83360328 MS.gene065024:CDS
GAGCGGTGGAATCATCAACT+GGG 0.687131 1.2:+83359599 None:intergenic
ACATCAGGACCAATTTCAGG+AGG 0.690189 1.2:+83360522 None:intergenic
TGATTGTTGCTATTATACCA+TGG 0.695794 1.2:+83360015 None:intergenic
AGAGTACTCAGCATTCAGAG+AGG 0.715627 1.2:-83359746 MS.gene065024:CDS
GTATCAATGGAAAACATGAG+CGG 0.720779 1.2:+83359582 None:intergenic
GGGTGACCGAGGATGAACCA+GGG 0.727268 1.2:-83360743 MS.gene065024:CDS
AATGTTAGGTGGGATACTTG+GGG 0.732363 1.2:-83360351 MS.gene065024:CDS
TGTGTAATATGAACCTGTTG+GGG 0.733638 1.2:+83360801 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAATCTGTTGAAAAACCAA+TGG + chr1.2:83360940-83360959 None:intergenic 25.0%
! AAACAAAAAAAGCTAGCTAA+AGG - chr1.2:83359879-83359898 MS.gene065024:CDS 25.0%
! AAATCTGTTGAAAAACCAAT+GGG + chr1.2:83360939-83360958 None:intergenic 25.0%
! AACAAAAAAAGCTAGCTAAA+GGG - chr1.2:83359880-83359899 MS.gene065024:CDS 25.0%
! AACAATCAACATTATATGGA+AGG - chr1.2:83360563-83360582 MS.gene065024:CDS 25.0%
! ACAATCAACATTATATGGAA+GGG - chr1.2:83360564-83360583 MS.gene065024:CDS 25.0%
! ACTAAATACTATTATGAGGT+TGG - chr1.2:83359981-83360000 MS.gene065024:CDS 25.0%
! ATGAATTGAATCCCAAAAAA+GGG - chr1.2:83360132-83360151 MS.gene065024:CDS 25.0%
! ATTGCATATAATGTTGTGAA+TGG - chr1.2:83360692-83360711 MS.gene065024:CDS 25.0%
! CAACACTAAATACTATTATG+AGG - chr1.2:83359977-83359996 MS.gene065024:CDS 25.0%
! TAGAAATCAAGATGGTTATT+CGG - chr1.2:83360901-83360920 MS.gene065024:CDS 25.0%
! TAGCAACAATCAACATTATA+TGG - chr1.2:83360559-83360578 MS.gene065024:CDS 25.0%
! TATGAATTGAATCCCAAAAA+AGG - chr1.2:83360131-83360150 MS.gene065024:CDS 25.0%
! TCTGTTCATTATGTCAAAAA+TGG + chr1.2:83360858-83360877 None:intergenic 25.0%
! TTATTCATCACACTACTATA+AGG - chr1.2:83359943-83359962 MS.gene065024:CDS 25.0%
!! CTTTATAAGGAGTATAGTAT+CGG + chr1.2:83360352-83360371 None:intergenic 25.0%
!! CTTTTGATAGAATACCAAAA+GGG + chr1.2:83360392-83360411 None:intergenic 25.0%
!! TCTTTTGATAGAATACCAAA+AGG + chr1.2:83360393-83360412 None:intergenic 25.0%
!!! ATTGGTTTTTCAACAGATTT+TGG - chr1.2:83360939-83360958 MS.gene065024:CDS 25.0%
!!! TTTAGCTAGCTTTTTTTGTT+TGG + chr1.2:83359880-83359899 None:intergenic 25.0%
AAATCATGACAATGTTAGGT+GGG - chr1.2:83360202-83360221 MS.gene065024:CDS 30.0%
ACCTAACATTGTCATGATTT+GGG + chr1.2:83360202-83360221 None:intergenic 30.0%
AGATTCTTCAATTACTCATC+TGG - chr1.2:83359918-83359937 MS.gene065024:CDS 30.0%
CAATCAACATTATATGGAAG+GGG - chr1.2:83360565-83360584 MS.gene065024:CDS 30.0%
GTACTTTGTGATGCTTTATA+AGG + chr1.2:83360365-83360384 None:intergenic 30.0%
TCACACTACTATAAGGAATT+TGG - chr1.2:83359950-83359969 MS.gene065024:CDS 30.0%
TTGTGTAATATGAACCTGTT+GGG + chr1.2:83359766-83359785 None:intergenic 30.0%
TTTATAACTCCTCCTGAAAT+TGG - chr1.2:83360032-83360051 MS.gene065024:CDS 30.0%
TTTGTTAGGAATGTTCAGAA+GGG - chr1.2:83359684-83359703 MS.gene065024:CDS 30.0%
! AACACTGTTTTCCCTTTTTT+GGG + chr1.2:83360146-83360165 None:intergenic 30.0%
! TGATTGTTGCTATTATACCA+TGG + chr1.2:83360551-83360570 None:intergenic 30.0%
! TTTTGTTAGGAATGTTCAGA+AGG - chr1.2:83359683-83359702 MS.gene065024:CDS 30.0%
!! AATTTGGTGTTTGTGTGTAA+TGG - chr1.2:83359645-83359664 MS.gene065024:CDS 30.0%
!!! ACTAGCTCTAGTTTTGAATT+TGG - chr1.2:83359629-83359648 MS.gene065024:CDS 30.0%
AATATACACCACAGTACCAA+TGG - chr1.2:83360459-83360478 MS.gene065024:CDS 35.0%
ACCTTGTACTTAACAAACCA+TGG + chr1.2:83360614-83360633 None:intergenic 35.0%
ACTATTATGAGGTTGGACTT+GGG - chr1.2:83359988-83360007 MS.gene065024:CDS 35.0%
ATTACACAAGGTGATCTTGT+TGG - chr1.2:83359777-83359796 MS.gene065024:CDS 35.0%
CAAATCATGACAATGTTAGG+TGG - chr1.2:83360201-83360220 MS.gene065024:CDS 35.0%
CAACAGGTTCATATTACACA+AGG - chr1.2:83359765-83359784 MS.gene065024:CDS 35.0%
CACCTAACATTGTCATGATT+TGG + chr1.2:83360203-83360222 None:intergenic 35.0%
CGAATAAGGTTTGAATGGTT+TGG + chr1.2:83360327-83360346 None:intergenic 35.0%
CTTGTGTAATATGAACCTGT+TGG + chr1.2:83359767-83359786 None:intergenic 35.0%
GTATACATAACCATTGGAGA+TGG - chr1.2:83360749-83360768 MS.gene065024:CDS 35.0%
GTTTCTGTCCTGTTAACTTT+AGG + chr1.2:83360500-83360519 None:intergenic 35.0%
TACTATTATGAGGTTGGACT+TGG - chr1.2:83359987-83360006 MS.gene065024:CDS 35.0%
TCCCAAATCATGACAATGTT+AGG - chr1.2:83360198-83360217 MS.gene065024:CDS 35.0%
TCTCCAATGGTTATGTATAC+AGG + chr1.2:83360749-83360768 None:intergenic 35.0%
TGCATTAGAACAATCAACCA+AGG + chr1.2:83360524-83360543 None:intergenic 35.0%
TGTGTAATATGAACCTGTTG+GGG + chr1.2:83359765-83359784 None:intergenic 35.0%
TTACACAAGGTGATCTTGTT+GGG - chr1.2:83359778-83359797 MS.gene065024:CDS 35.0%
TTGTTCTAATGCATTCACCA+TGG - chr1.2:83360531-83360550 MS.gene065024:CDS 35.0%
! CAACACTGTTTTCCCTTTTT+TGG + chr1.2:83360147-83360166 None:intergenic 35.0%
! GGAGCTGATTGATCTTTTAT+AGG + chr1.2:83360728-83360747 None:intergenic 35.0%
! TTTTCCATATGCTGAATACG+AGG + chr1.2:83360441-83360460 None:intergenic 35.0%
AATGTTAGGTGGGATACTTG+GGG - chr1.2:83360212-83360231 MS.gene065024:CDS 40.0%
ACAATGTTAGGTGGGATACT+TGG - chr1.2:83360210-83360229 MS.gene065024:CDS 40.0%
ACATAACCATTGGAGATGGA+GGG - chr1.2:83360753-83360772 MS.gene065024:CDS 40.0%
AGCTGGCATAGAAATCAAGA+TGG - chr1.2:83360893-83360912 MS.gene065024:CDS 40.0%
AGGAGCTACCTAAAGTTAAC+AGG - chr1.2:83360489-83360508 MS.gene065024:CDS 40.0%
CAATGTTAGGTGGGATACTT+GGG - chr1.2:83360211-83360230 MS.gene065024:CDS 40.0%
CCATACACATTTGGTCTCAT+AGG - chr1.2:83360065-83360084 MS.gene065024:CDS 40.0%
CCTATGAGACCAAATGTGTA+TGG + chr1.2:83360068-83360087 None:intergenic 40.0%
GAAAGCAGTGATCGTATCAT+GGG - chr1.2:83359800-83359819 MS.gene065024:CDS 40.0%
GCTCCTGTATACATAACCAT+TGG - chr1.2:83360743-83360762 MS.gene065024:CDS 40.0%
TACATAACCATTGGAGATGG+AGG - chr1.2:83360752-83360771 MS.gene065024:CDS 40.0%
TCAAGATGGTTATTCGGTTG+AGG - chr1.2:83360907-83360926 MS.gene065024:CDS 40.0%
TGAGAGTAATGTATGAGCCA+TGG - chr1.2:83360594-83360613 MS.gene065024:CDS 40.0%
TGCAATATTCGACACACGTT+CGG + chr1.2:83360678-83360697 None:intergenic 40.0%
TGGCTTATCAACCATGGATA+TGG - chr1.2:83360255-83360274 MS.gene065024:CDS 40.0%
TTAACAGGACAGAAACTCCT+TGG - chr1.2:83360504-83360523 MS.gene065024:CDS 40.0%
TTCAGCTCACATCATTGTCT+TGG - chr1.2:83360415-83360434 MS.gene065024:CDS 40.0%
TTTCCTACAGTCCATATCCA+TGG + chr1.2:83360269-83360288 None:intergenic 40.0%
TTTGGTCTCATAGGAGATCT+TGG - chr1.2:83360074-83360093 MS.gene065024:CDS 40.0%
! ATTGATTTCGCCCCAGAAAT+TGG - chr1.2:83360296-83360315 MS.gene065024:CDS 40.0%
! GCACAACTAGTGCTTTTGTT+AGG - chr1.2:83359670-83359689 MS.gene065024:CDS 40.0%
! GGAACACAACAAGACAGTTT+TGG - chr1.2:83360009-83360028 MS.gene065024:CDS 40.0%
! GTTTGGTTTCGCCAATTTCT+GGG + chr1.2:83360310-83360329 None:intergenic 40.0%
! TTGGTGTTTGTGTGTAATGG+AGG - chr1.2:83359648-83359667 MS.gene065024:CDS 40.0%
! TTTGGTTTCGCCAATTTCTG+GGG + chr1.2:83360309-83360328 None:intergenic 40.0%
!! AAGGTTGATGTTGTGTATGC+TGG - chr1.2:83360629-83360648 MS.gene065024:CDS 40.0%
!! CACAAAGTACTTCACCCTTT+TGG - chr1.2:83360375-83360394 MS.gene065024:CDS 40.0%
!! GCCATGGTTTGTTAAGTACA+AGG - chr1.2:83360610-83360629 MS.gene065024:CDS 40.0%
!! GGGAAAACAGTGTTGTTTGT+TGG - chr1.2:83360152-83360171 MS.gene065024:CDS 40.0%
!! GTATAGTATCGGTGCGAATA+AGG + chr1.2:83360341-83360360 None:intergenic 40.0%
!!! GATGTTTTTGCTGTTCCTTC+TGG - chr1.2:83359729-83359748 MS.gene065024:CDS 40.0%
AAGGTTTGTAGAAAGGAGCG+TGG - chr1.2:83360235-83360254 MS.gene065024:CDS 45.0%
ACAGTACCAATGGCTTGAAC+AGG - chr1.2:83360469-83360488 MS.gene065024:CDS 45.0%
ACATCAGGACCAATTTCAGG+AGG + chr1.2:83360044-83360063 None:intergenic 45.0%
CACACGTTCGGTTCTTTCAT+AGG + chr1.2:83360666-83360685 None:intergenic 45.0%
CCAAATGTGTATGGCACATC+AGG + chr1.2:83360059-83360078 None:intergenic 45.0%
CCTGATGTGCCATACACATT+TGG - chr1.2:83360056-83360075 MS.gene065024:CDS 45.0%
CGGTGCGAATAAGGTTTGAA+TGG + chr1.2:83360332-83360351 None:intergenic 45.0%
CTGGGGCGAAATCAATTTCA+TGG + chr1.2:83360292-83360311 None:intergenic 45.0%
CTTGGGGAAGGTTTGTAGAA+AGG - chr1.2:83360228-83360247 MS.gene065024:CDS 45.0%
GAACACATGCTCACTATAGC+TGG - chr1.2:83360876-83360895 MS.gene065024:CDS 45.0%
GGAAAGCAGTGATCGTATCA+TGG - chr1.2:83359799-83359818 MS.gene065024:CDS 45.0%
TCAATGGAAAACATGAGCGG+TGG + chr1.2:83360981-83361000 None:intergenic 45.0%
TCTCTGAATGCTGAGTACTC+TGG + chr1.2:83360818-83360837 None:intergenic 45.0%
TGGTTATAATGCTCCCCAAC+AGG - chr1.2:83359749-83359768 MS.gene065024:CDS 45.0%
TGTTCAAGCCATTGGTACTG+TGG + chr1.2:83360470-83360489 None:intergenic 45.0%
TTGGCCTCGTATTCAGCATA+TGG - chr1.2:83360434-83360453 MS.gene065024:CDS 45.0%
! AGAGTACTCAGCATTCAGAG+AGG - chr1.2:83360817-83360836 MS.gene065024:CDS 45.0%
! CAACCATGGATATGGACTGT+AGG - chr1.2:83360263-83360282 MS.gene065024:CDS 45.0%
! GGTTTGGTTTCGCCAATTTC+TGG + chr1.2:83360311-83360330 None:intergenic 45.0%
!! TGGGGAGCATTATAACCAGA+AGG + chr1.2:83359747-83359766 None:intergenic 45.0%
!! TGTTGGTTTCTAAGCCTCCA+AGG + chr1.2:83360781-83360800 None:intergenic 45.0%
AAGGTTCCCTCCATCTCCAA+TGG + chr1.2:83360762-83360781 None:intergenic 50.0%
AATGCTGAGTACTCTGGCTG+TGG + chr1.2:83360812-83360831 None:intergenic 50.0%
ATTGGAGATGGAGGGAACCT+TGG - chr1.2:83360761-83360780 MS.gene065024:CDS 50.0%
GAGCGGTGGAATCATCAACT+GGG + chr1.2:83360967-83360986 None:intergenic 50.0%
GGCACATCAGGACCAATTTC+AGG + chr1.2:83360047-83360066 None:intergenic 50.0%
GTAGCTCCTGTTCAAGCCAT+TGG + chr1.2:83360478-83360497 None:intergenic 50.0%
TGAGCGGTGGAATCATCAAC+TGG + chr1.2:83360968-83360987 None:intergenic 50.0%
TTAGGTGGGATACTTGGGGA+AGG - chr1.2:83360216-83360235 MS.gene065024:CDS 50.0%
! TGGCTGTGGTTCTGTCATGT+TGG + chr1.2:83360798-83360817 None:intergenic 50.0%
!! GCATTCAGAGAGGCTAGCTT+TGG - chr1.2:83360827-83360846 MS.gene065024:CDS 50.0%
GATCGTATCATGGGTGACCG+AGG - chr1.2:83359809-83359828 MS.gene065024:CDS 55.0%
GGAGCGTGGCTTATCAACCA+TGG - chr1.2:83360249-83360268 MS.gene065024:CDS 55.0%
GTTCGACCCTGGTTCATCCT+CGG + chr1.2:83359829-83359848 None:intergenic 55.0%
! CGGTTGAGGCTGATTCCCAT+TGG - chr1.2:83360921-83360940 MS.gene065024:CDS 55.0%
GGAGATGGAGGGAACCTTGG+AGG - chr1.2:83360764-83360783 MS.gene065024:CDS 60.0%
GGGTGACCGAGGATGAACCA+GGG - chr1.2:83359820-83359839 MS.gene065024:CDS 60.0%
TGGGTGACCGAGGATGAACC+AGG - chr1.2:83359819-83359838 MS.gene065024:CDS 60.0%
GGTCGAACGCAGTGCGCTAC+TGG - chr1.2:83359841-83359860 MS.gene065024:CDS 65.0%
TAGCGCACTGCGTTCGACCC+TGG + chr1.2:83359840-83359859 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 83359585 83361000 83359585 ID=MS.gene065024
chr1.2 mRNA 83359585 83361000 83359585 ID=MS.gene065024.t1;Parent=MS.gene065024
chr1.2 exon 83359585 83361000 83359585 ID=MS.gene065024.t1.exon1;Parent=MS.gene065024.t1
chr1.2 CDS 83359585 83361000 83359585 ID=cds.MS.gene065024.t1;Parent=MS.gene065024.t1
Gene Sequence

>MS.gene065024

ATGGGTATTTCTCAAGGATTATCAATTACTAGTTTTTTATTATCACTAGCTCTAGTTTTGAATTTGGTGTTTGTGTGTAATGGAGGCACAACTAGTGCTTTTGTTAGGAATGTTCAGAAGGGCGTTAATATGTCACTTGATAGTGATGTTTTTGCTGTTCCTTCTGGTTATAATGCTCCCCAACAGGTTCATATTACACAAGGTGATCTTGTTGGGAAAGCAGTGATCGTATCATGGGTGACCGAGGATGAACCAGGGTCGAACGCAGTGCGCTACTGGAGTACTGACAACACCAAACAAAAAAAGCTAGCTAAAGGGAAAATTGTTACTTATAGATTCTTCAATTACTCATCTGGTTTTATTCATCACACTACTATAAGGAATTTGGAGTACAACACTAAATACTATTATGAGGTTGGACTTGGGAACACAACAAGACAGTTTTGGTTTATAACTCCTCCTGAAATTGGTCCTGATGTGCCATACACATTTGGTCTCATAGGAGATCTTGGTCAGAGCTTTGATTCAAACAGAACACTTTCTCACTATGAATTGAATCCCAAAAAAGGGAAAACAGTGTTGTTTGTTGGAGATCTCTCTTATTCAGATAACTTCCCAAATCATGACAATGTTAGGTGGGATACTTGGGGAAGGTTTGTAGAAAGGAGCGTGGCTTATCAACCATGGATATGGACTGTAGGAAACCATGAAATTGATTTCGCCCCAGAAATTGGCGAAACCAAACCATTCAAACCTTATTCGCACCGATACTATACTCCTTATAAAGCATCACAAAGTACTTCACCCTTTTGGTATTCTATCAAAAGAGCTTCAGCTCACATCATTGTCTTGGCCTCGTATTCAGCATATGGAAAATATACACCACAGTACCAATGGCTTGAACAGGAGCTACCTAAAGTTAACAGGACAGAAACTCCTTGGTTGATTGTTCTAATGCATTCACCATGGTATAATAGCAACAATCAACATTATATGGAAGGGGAGACAATGAGAGTAATGTATGAGCCATGGTTTGTTAAGTACAAGGTTGATGTTGTGTATGCTGGACATGTGCATGCCTATGAAAGAACCGAACGTGTGTCGAATATTGCATATAATGTTGTGAATGGTATTTGCACTCCTATAAAAGATCAATCAGCTCCTGTATACATAACCATTGGAGATGGAGGGAACCTTGGAGGCTTAGAAACCAACATGACAGAACCACAGCCAGAGTACTCAGCATTCAGAGAGGCTAGCTTTGGACATGCCATTTTTGACATAATGAACAGAACACATGCTCACTATAGCTGGCATAGAAATCAAGATGGTTATTCGGTTGAGGCTGATTCCCATTGGTTTTTCAACAGATTTTGGCACCCAGTTGATGATTCCACCGCTCATGTTTTCCATTGA
Protein sequence

>MS.gene065024.t1

MGISQGLSITSFLLSLALVLNLVFVCNGGTTSAFVRNVQKGVNMSLDSDVFAVPSGYNAPQQVHITQGDLVGKAVIVSWVTEDEPGSNAVRYWSTDNTKQKKLAKGKIVTYRFFNYSSGFIHHTTIRNLEYNTKYYYEVGLGNTTRQFWFITPPEIGPDVPYTFGLIGDLGQSFDSNRTLSHYELNPKKGKTVLFVGDLSYSDNFPNHDNVRWDTWGRFVERSVAYQPWIWTVGNHEIDFAPEIGETKPFKPYSHRYYTPYKASQSTSPFWYSIKRASAHIIVLASYSAYGKYTPQYQWLEQELPKVNRTETPWLIVLMHSPWYNSNNQHYMEGETMRVMYEPWFVKYKVDVVYAGHVHAYERTERVSNIAYNVVNGICTPIKDQSAPVYITIGDGGNLGGLETNMTEPQPEYSAFREASFGHAIFDIMNRTHAHYSWHRNQDGYSVEADSHWFFNRFWHPVDDSTAHVFH