Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06531.t1 | KEH35544.1 | 96.7 | 209 | 7 | 0 | 7 | 215 | 21 | 229 | 3.70E-105 | 391 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06531.t1 | Q8VZW3 | 62.7 | 209 | 77 | 1 | 7 | 214 | 1 | 209 | 1.3e-66 | 254.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06531.t1 | A0A072V0J3 | 96.7 | 209 | 7 | 0 | 7 | 215 | 21 | 229 | 2.6e-105 | 391.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049402 | MS.gene06531 | 0.904526 | 1.12E-79 | -1.69E-46 |
| MS.gene050883 | MS.gene06531 | 0.802443 | 5.60E-49 | -1.69E-46 |
| MS.gene055124 | MS.gene06531 | 0.808876 | 2.50E-50 | -1.69E-46 |
| MS.gene058111 | MS.gene06531 | 0.811078 | 8.38E-51 | -1.69E-46 |
| MS.gene058171 | MS.gene06531 | 0.819892 | 9.15E-53 | -1.69E-46 |
| MS.gene058173 | MS.gene06531 | 0.816644 | 4.97E-52 | -1.69E-46 |
| MS.gene058175 | MS.gene06531 | 0.821639 | 3.63E-53 | -1.69E-46 |
| MS.gene059045 | MS.gene06531 | 0.812586 | 3.93E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06531.t1 | MTR_3g093980 | 96.651 | 209 | 7 | 0 | 7 | 215 | 21 | 229 | 2.57e-147 | 409 |
| MS.gene06531.t1 | MTR_3g093980 | 97.175 | 177 | 5 | 0 | 39 | 215 | 1 | 177 | 1.31e-125 | 352 |
| MS.gene06531.t1 | MTR_3g093980 | 95.541 | 157 | 7 | 0 | 7 | 163 | 1 | 157 | 1.53e-97 | 280 |
| MS.gene06531.t1 | MTR_1g115820 | 32.075 | 212 | 132 | 5 | 12 | 215 | 8 | 215 | 6.12e-21 | 87.4 |
| MS.gene06531.t1 | MTR_1g115820 | 35.220 | 159 | 96 | 3 | 12 | 166 | 8 | 163 | 8.06e-20 | 82.8 |
| MS.gene06531.t1 | MTR_1g115850 | 28.019 | 207 | 139 | 4 | 12 | 211 | 11 | 214 | 1.01e-18 | 81.3 |
| MS.gene06531.t1 | MTR_1g115840 | 29.048 | 210 | 137 | 6 | 12 | 213 | 11 | 216 | 1.46e-18 | 80.9 |
| MS.gene06531.t1 | MTR_1g115890 | 27.404 | 208 | 143 | 5 | 11 | 211 | 8 | 214 | 9.54e-18 | 79.0 |
| MS.gene06531.t1 | MTR_1g115870 | 28.972 | 214 | 143 | 6 | 6 | 211 | 2 | 214 | 3.71e-17 | 77.4 |
| MS.gene06531.t1 | MTR_1g115850 | 27.103 | 214 | 139 | 5 | 12 | 211 | 11 | 221 | 4.48e-16 | 74.3 |
| MS.gene06531.t1 | MTR_2g072510 | 28.000 | 200 | 133 | 6 | 16 | 213 | 86 | 276 | 7.32e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06531.t1 | AT5G05270 | 62.679 | 209 | 77 | 1 | 7 | 214 | 1 | 209 | 7.61e-84 | 248 |
| MS.gene06531.t1 | AT5G05270 | 62.679 | 209 | 77 | 1 | 7 | 214 | 1 | 209 | 7.61e-84 | 248 |
| MS.gene06531.t1 | AT3G55120 | 30.374 | 214 | 129 | 8 | 14 | 215 | 21 | 226 | 8.49e-17 | 76.6 |
| MS.gene06531.t1 | AT1G53520 | 26.344 | 186 | 131 | 4 | 29 | 213 | 106 | 286 | 1.67e-15 | 73.9 |
| MS.gene06531.t1 | AT5G66230 | 29.108 | 213 | 125 | 8 | 14 | 215 | 11 | 208 | 8.81e-15 | 72.8 |
| MS.gene06531.t1 | AT5G66220 | 29.032 | 155 | 102 | 3 | 65 | 215 | 9 | 159 | 1.70e-13 | 66.2 |
Find 59 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTCAATTGGGGTTTATT+TGG | 0.127513 | 3.2:+78807699 | MS.gene06531:CDS |
| AGAATTTCACTTGGAGAAAA+TGG | 0.134571 | 3.2:-78807678 | None:intergenic |
| TTCTTTGACGCTCTCATTTC+TGG | 0.168815 | 3.2:+78807793 | MS.gene06531:CDS |
| TGTTGTGATTAAAGAGATTA+AGG | 0.213746 | 3.2:+78808047 | MS.gene06531:CDS |
| TCCTTCAACCATTACATCTT+TGG | 0.255062 | 3.2:+78808668 | MS.gene06531:CDS |
| CAAGTGAAATTCTATTCAAT+TGG | 0.286514 | 3.2:+78807688 | MS.gene06531:CDS |
| AATACAGATTGTGGTATCTT+TGG | 0.300414 | 3.2:+78808554 | MS.gene06531:intron |
| TGCAAGTGGCTTGCTACTTC+AGG | 0.308776 | 3.2:-78807724 | None:intergenic |
| AAGTGAAATTCTATTCAATT+GGG | 0.340514 | 3.2:+78807689 | MS.gene06531:CDS |
| AGTGGCTAGTGAAACTGTTT+TGG | 0.373529 | 3.2:+78807311 | MS.gene06531:intron |
| GAGATTAAGGGTGCACAATA+TGG | 0.383753 | 3.2:+78808060 | MS.gene06531:CDS |
| GGATGAAGAAGAAGAAGCTT+TGG | 0.390087 | 3.2:+78808137 | MS.gene06531:CDS |
| TTGTCTTCCAACTCCTTGGC+AGG | 0.403272 | 3.2:-78807763 | None:intergenic |
| ATTAAGAAATGGTATCTTGC+TGG | 0.410454 | 3.2:+78808630 | MS.gene06531:CDS |
| ACCAAGGAGAGAAAGGGTTT+TGG | 0.417350 | 3.2:-78807370 | None:intergenic |
| GACCGCTGTGAGGGACCGTT+TGG | 0.422176 | 3.2:+78808095 | MS.gene06531:CDS |
| ACCAAAACCCTTTCTCTCCT+TGG | 0.424712 | 3.2:+78807369 | MS.gene06531:CDS |
| TCAGCAGTTGGAGAATTTGC+TGG | 0.427232 | 3.2:-78808225 | None:intergenic |
| CTTAATAGTCTCTACTACAT+TGG | 0.428653 | 3.2:-78808613 | None:intergenic |
| TTGGTAGTAGTGATCTTTGA+AGG | 0.439710 | 3.2:-78807351 | None:intergenic |
| GTTGTGATTAAAGAGATTAA+GGG | 0.453545 | 3.2:+78808048 | MS.gene06531:CDS |
| TTCATCCTCATATTTGTCAT+CGG | 0.460901 | 3.2:-78808121 | None:intergenic |
| ATCATTGTCTTCCAACTCCT+TGG | 0.461782 | 3.2:-78807767 | None:intergenic |
| TAGTAGAGACTATTAAGAAA+TGG | 0.472191 | 3.2:+78808619 | MS.gene06531:CDS |
| GTTTCTTGAAGTACTTAGAC+TGG | 0.476418 | 3.2:-78808179 | None:intergenic |
| TACCATGACCAAGGAGAGAA+AGG | 0.488761 | 3.2:-78807377 | None:intergenic |
| GCCAAAGATGTAATGGTTGA+AGG | 0.506201 | 3.2:-78808669 | None:intergenic |
| TGGATAATTCCTCTGAGAGA+TGG | 0.511898 | 3.2:-78808695 | None:intergenic |
| CAATTGAATAGAATTTCACT+TGG | 0.511986 | 3.2:-78807687 | None:intergenic |
| AGCTACTTTACCTCAGCAGT+TGG | 0.518480 | 3.2:-78808237 | None:intergenic |
| AGTCTAATTGCCTTCTCCAC+AGG | 0.518956 | 3.2:-78808024 | None:intergenic |
| CAGATTGTGGTATCTTTGGA+AGG | 0.521938 | 3.2:+78808558 | MS.gene06531:intron |
| TACCTTTCCACTGTTGCAAG+TGG | 0.522349 | 3.2:-78807738 | None:intergenic |
| ATGTGCAGCTCCTGTGGAGA+AGG | 0.525875 | 3.2:+78808014 | MS.gene06531:intron |
| ATGGGTAGCCAAAGATGTAA+TGG | 0.528630 | 3.2:-78808676 | None:intergenic |
| CAGCAGTTGGAGAATTTGCT+GGG | 0.534064 | 3.2:-78808224 | None:intergenic |
| GGATAATTCCTCTGAGAGAT+GGG | 0.538139 | 3.2:-78808694 | None:intergenic |
| ACCATGACCAAGGAGAGAAA+GGG | 0.540135 | 3.2:-78807376 | None:intergenic |
| ACCCTTTCTCTCCTTGGTCA+TGG | 0.540415 | 3.2:+78807375 | MS.gene06531:CDS |
| GTGAATATGTGCAGCTCCTG+TGG | 0.541590 | 3.2:+78808008 | MS.gene06531:intron |
| AATGGTATCTTGCTGGCTCA+AGG | 0.546466 | 3.2:+78808637 | MS.gene06531:CDS |
| ATTTGTCATCGGCTGCCAAA+CGG | 0.557673 | 3.2:-78808110 | None:intergenic |
| AGTGAAATTCTATTCAATTG+GGG | 0.558547 | 3.2:+78807690 | MS.gene06531:CDS |
| TGGTAGTAGTGATCTTTGAA+GGG | 0.566326 | 3.2:-78807350 | None:intergenic |
| ATGGTATCTTGCTGGCTCAA+GGG | 0.567607 | 3.2:+78808638 | MS.gene06531:CDS |
| AGGTAAGCCTGCCAAGGAGT+TGG | 0.569479 | 3.2:+78807756 | MS.gene06531:CDS |
| TAGCAAGCCACTTGCAACAG+TGG | 0.573061 | 3.2:+78807731 | MS.gene06531:CDS |
| GGCAGCCGATGACAAATATG+AGG | 0.581635 | 3.2:+78808116 | MS.gene06531:CDS |
| TTTGATAGGGATTACCGACA+TGG | 0.591441 | 3.2:+78807651 | MS.gene06531:intron |
| AGCCACTTGCAACAGTGGAA+AGG | 0.600159 | 3.2:+78807736 | MS.gene06531:CDS |
| AGATTGTGGTATCTTTGGAA+GGG | 0.601655 | 3.2:+78808559 | MS.gene06531:intron |
| AGCAAATTCTCCAACTGCTG+AGG | 0.619172 | 3.2:+78808227 | MS.gene06531:CDS |
| GTGGAAAGGTAAGCCTGCCA+AGG | 0.623835 | 3.2:+78807750 | MS.gene06531:CDS |
| GAGAAAATGGATCTCCATGT+CGG | 0.629435 | 3.2:-78807665 | None:intergenic |
| TCAGATTGAGACCGCTGTGA+GGG | 0.629678 | 3.2:+78808086 | MS.gene06531:CDS |
| TGCCAAACGGTCCCTCACAG+CGG | 0.689378 | 3.2:-78808097 | None:intergenic |
| TTTGGCTACCCATCTCTCAG+AGG | 0.689828 | 3.2:+78808686 | MS.gene06531:CDS |
| TTCAGATTGAGACCGCTGTG+AGG | 0.696200 | 3.2:+78808085 | MS.gene06531:CDS |
| GTAGCAACTTACCATGACCA+AGG | 0.712424 | 3.2:-78807386 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAACATTTATGATATAATTA+AGG | - | chr3.2:78807954-78807973 | None:intergenic | 15.0% |
| !!! | AAAAAAATTAAGTTGGTTAT+AGG | - | chr3.2:78808380-78808399 | None:intergenic | 15.0% |
| !!! | AATTAGTTTAAGTTGATTTT+AGG | + | chr3.2:78808307-78808326 | MS.gene06531:intron | 15.0% |
| !! | AAAGAAGTTGGATTATAAAA+GGG | - | chr3.2:78807830-78807849 | None:intergenic | 20.0% |
| !! | AAGATATTATTGAAAGAAGT+TGG | - | chr3.2:78807842-78807861 | None:intergenic | 20.0% |
| !! | AAGTGAAATTCTATTCAATT+GGG | + | chr3.2:78807689-78807708 | MS.gene06531:CDS | 20.0% |
| !! | TCAAATCAAGAAAAAGAATT+TGG | - | chr3.2:78807440-78807459 | None:intergenic | 20.0% |
| !! | TTGTTAATATTAGTTGAAGT+TGG | - | chr3.2:78808493-78808512 | None:intergenic | 20.0% |
| !!! | AACTAATTCTAAGAATGAAT+AGG | - | chr3.2:78808295-78808314 | None:intergenic | 20.0% |
| !!! | CTTGATTTGATTTTGAATAT+GGG | + | chr3.2:78807450-78807469 | MS.gene06531:intron | 20.0% |
| !!! | TCTTGATTTGATTTTGAATA+TGG | + | chr3.2:78807449-78807468 | MS.gene06531:intron | 20.0% |
| !!! | TTGATTTGATTTTGAATATG+GGG | + | chr3.2:78807451-78807470 | MS.gene06531:intron | 20.0% |
| ! | AGAATGAATAGGATCAATTA+AGG | - | chr3.2:78808284-78808303 | None:intergenic | 25.0% |
| ! | AGTGAAATTCTATTCAATTG+GGG | + | chr3.2:78807690-78807709 | MS.gene06531:CDS | 25.0% |
| ! | CAAGTGAAATTCTATTCAAT+TGG | + | chr3.2:78807688-78807707 | MS.gene06531:CDS | 25.0% |
| ! | CAATTGAATAGAATTTCACT+TGG | - | chr3.2:78807690-78807709 | None:intergenic | 25.0% |
| ! | GAAAGAAGTTGGATTATAAA+AGG | - | chr3.2:78807831-78807850 | None:intergenic | 25.0% |
| ! | GAATTTGGAAGAATTTCAAA+AGG | - | chr3.2:78807425-78807444 | None:intergenic | 25.0% |
| ! | GAGCTCATCTATTTATTATT+TGG | + | chr3.2:78807902-78807921 | MS.gene06531:intron | 25.0% |
| ! | GTTGTGATTAAAGAGATTAA+GGG | + | chr3.2:78808048-78808067 | MS.gene06531:CDS | 25.0% |
| ! | TAGTAGAGACTATTAAGAAA+TGG | + | chr3.2:78808619-78808638 | MS.gene06531:CDS | 25.0% |
| ! | TATGAGATTTGAATTTCATC+CGG | + | chr3.2:78808420-78808439 | MS.gene06531:intron | 25.0% |
| ! | TGTTGTGATTAAAGAGATTA+AGG | + | chr3.2:78808047-78808066 | MS.gene06531:CDS | 25.0% |
| !! | GGAAAATCAAGTTATTGATT+TGG | - | chr3.2:78807628-78807647 | None:intergenic | 25.0% |
| !! | TTGATTTTCCTCTTTTGATA+GGG | + | chr3.2:78807638-78807657 | MS.gene06531:intron | 25.0% |
| !!! | TAAGAGTTTGATTTTGTAAC+CGG | - | chr3.2:78808442-78808461 | None:intergenic | 25.0% |
| AATACAGATTGTGGTATCTT+TGG | + | chr3.2:78808554-78808573 | MS.gene06531:intron | 30.0% | |
| ACAACAAACAATCATCACAT+TGG | - | chr3.2:78808534-78808553 | None:intergenic | 30.0% | |
| AGAATTTCACTTGGAGAAAA+TGG | - | chr3.2:78807681-78807700 | None:intergenic | 30.0% | |
| ATTAAGAAATGGTATCTTGC+TGG | + | chr3.2:78808630-78808649 | MS.gene06531:CDS | 30.0% | |
| CTATTCAATTGGGGTTTATT+TGG | + | chr3.2:78807699-78807718 | MS.gene06531:CDS | 30.0% | |
| CTTAATAGTCTCTACTACAT+TGG | - | chr3.2:78808616-78808635 | None:intergenic | 30.0% | |
| GTTTGTGAATTTGATTACAG+TGG | + | chr3.2:78807293-78807312 | MS.gene06531:intron | 30.0% | |
| TTCATCCTCATATTTGTCAT+CGG | - | chr3.2:78808124-78808143 | None:intergenic | 30.0% | |
| ! | CTTGATTTTCCTCTTTTGAT+AGG | + | chr3.2:78807637-78807656 | MS.gene06531:intron | 30.0% |
| !! | GTTTGTTGTAATACAGATTG+TGG | + | chr3.2:78808545-78808564 | MS.gene06531:intron | 30.0% |
| CTAAAAGTAGCAAGAGATGT+AGG | + | chr3.2:78807568-78807587 | MS.gene06531:intron | 35.0% | |
| GGTAGTTACAACTTACAAGT+TGG | + | chr3.2:78808328-78808347 | MS.gene06531:intron | 35.0% | |
| TCCTTCAACCATTACATCTT+TGG | + | chr3.2:78808668-78808687 | MS.gene06531:CDS | 35.0% | |
| TGGTAGTAGTGATCTTTGAA+GGG | - | chr3.2:78807353-78807372 | None:intergenic | 35.0% | |
| ! | AGATTGTGGTATCTTTGGAA+GGG | + | chr3.2:78808559-78808578 | MS.gene06531:intron | 35.0% |
| ! | GTTTCTTGAAGTACTTAGAC+TGG | - | chr3.2:78808182-78808201 | None:intergenic | 35.0% |
| ! | TTGGTAGTAGTGATCTTTGA+AGG | - | chr3.2:78807354-78807373 | None:intergenic | 35.0% |
| !! | GTTACAACTTACAAGTTGGT+TGG | + | chr3.2:78808332-78808351 | MS.gene06531:intron | 35.0% |
| ATCATTGTCTTCCAACTCCT+TGG | - | chr3.2:78807770-78807789 | None:intergenic | 40.0% | |
| ATGGGTAGCCAAAGATGTAA+TGG | - | chr3.2:78808679-78808698 | None:intergenic | 40.0% | |
| CAGATTGTGGTATCTTTGGA+AGG | + | chr3.2:78808558-78808577 | MS.gene06531:intron | 40.0% | |
| GAGAAAATGGATCTCCATGT+CGG | - | chr3.2:78807668-78807687 | None:intergenic | 40.0% | |
| GCCAAAGATGTAATGGTTGA+AGG | - | chr3.2:78808672-78808691 | None:intergenic | 40.0% | |
| GGATGAAGAAGAAGAAGCTT+TGG | + | chr3.2:78808137-78808156 | MS.gene06531:CDS | 40.0% | |
| GTAAAGTAGCTAGCAGCATT+AGG | + | chr3.2:78808249-78808268 | MS.gene06531:intron | 40.0% | |
| TCGGTAATCCCTATCAAAAG+AGG | - | chr3.2:78807649-78807668 | None:intergenic | 40.0% | |
| TTCTTTGACGCTCTCATTTC+TGG | + | chr3.2:78807793-78807812 | MS.gene06531:CDS | 40.0% | |
| TTTGATAGGGATTACCGACA+TGG | + | chr3.2:78807651-78807670 | MS.gene06531:intron | 40.0% | |
| ! | AGTGGCTAGTGAAACTGTTT+TGG | + | chr3.2:78807311-78807330 | MS.gene06531:intron | 40.0% |
| ! | GAGATTAAGGGTGCACAATA+TGG | + | chr3.2:78808060-78808079 | MS.gene06531:CDS | 40.0% |
| ! | GGATAATTCCTCTGAGAGAT+GGG | - | chr3.2:78808697-78808716 | None:intergenic | 40.0% |
| ! | TGGATAATTCCTCTGAGAGA+TGG | - | chr3.2:78808698-78808717 | None:intergenic | 40.0% |
| ACCAAAACCCTTTCTCTCCT+TGG | + | chr3.2:78807369-78807388 | MS.gene06531:CDS | 45.0% | |
| ACCATGACCAAGGAGAGAAA+GGG | - | chr3.2:78807379-78807398 | None:intergenic | 45.0% | |
| AGCAAATTCTCCAACTGCTG+AGG | + | chr3.2:78808227-78808246 | MS.gene06531:CDS | 45.0% | |
| AGTCTAATTGCCTTCTCCAC+AGG | - | chr3.2:78808027-78808046 | None:intergenic | 45.0% | |
| GTAGCAACTTACCATGACCA+AGG | - | chr3.2:78807389-78807408 | None:intergenic | 45.0% | |
| TACCATGACCAAGGAGAGAA+AGG | - | chr3.2:78807380-78807399 | None:intergenic | 45.0% | |
| TACCTTTCCACTGTTGCAAG+TGG | - | chr3.2:78807741-78807760 | None:intergenic | 45.0% | |
| TCAGCAGTTGGAGAATTTGC+TGG | - | chr3.2:78808228-78808247 | None:intergenic | 45.0% | |
| ! | ACCAAGGAGAGAAAGGGTTT+TGG | - | chr3.2:78807373-78807392 | None:intergenic | 45.0% |
| ! | AGCTACTTTACCTCAGCAGT+TGG | - | chr3.2:78808240-78808259 | None:intergenic | 45.0% |
| ! | ATTTGTCATCGGCTGCCAAA+CGG | - | chr3.2:78808113-78808132 | None:intergenic | 45.0% |
| ! | CAGCAGTTGGAGAATTTGCT+GGG | - | chr3.2:78808227-78808246 | None:intergenic | 45.0% |
| !! | AATGGTATCTTGCTGGCTCA+AGG | + | chr3.2:78808637-78808656 | MS.gene06531:CDS | 45.0% |
| !! | ATGGTATCTTGCTGGCTCAA+GGG | + | chr3.2:78808638-78808657 | MS.gene06531:CDS | 45.0% |
| !! | AAAAAAAAAAAAAATTAAGT+TGG | - | chr3.2:78808387-78808406 | None:intergenic | 5.0% |
| ACCCTTTCTCTCCTTGGTCA+TGG | + | chr3.2:78807375-78807394 | MS.gene06531:CDS | 50.0% | |
| AGCCACTTGCAACAGTGGAA+AGG | + | chr3.2:78807736-78807755 | MS.gene06531:CDS | 50.0% | |
| GGCAGCCGATGACAAATATG+AGG | + | chr3.2:78808116-78808135 | MS.gene06531:CDS | 50.0% | |
| GTGAATATGTGCAGCTCCTG+TGG | + | chr3.2:78808008-78808027 | MS.gene06531:intron | 50.0% | |
| TAGCAAGCCACTTGCAACAG+TGG | + | chr3.2:78807731-78807750 | MS.gene06531:CDS | 50.0% | |
| TCAGATTGAGACCGCTGTGA+GGG | + | chr3.2:78808086-78808105 | MS.gene06531:CDS | 50.0% | |
| TTCAGATTGAGACCGCTGTG+AGG | + | chr3.2:78808085-78808104 | MS.gene06531:CDS | 50.0% | |
| TTGTCTTCCAACTCCTTGGC+AGG | - | chr3.2:78807766-78807785 | None:intergenic | 50.0% | |
| TTTGGCTACCCATCTCTCAG+AGG | + | chr3.2:78808686-78808705 | MS.gene06531:CDS | 50.0% | |
| !! | TGCAAGTGGCTTGCTACTTC+AGG | - | chr3.2:78807727-78807746 | None:intergenic | 50.0% |
| AGGTAAGCCTGCCAAGGAGT+TGG | + | chr3.2:78807756-78807775 | MS.gene06531:CDS | 55.0% | |
| ATGTGCAGCTCCTGTGGAGA+AGG | + | chr3.2:78808014-78808033 | MS.gene06531:intron | 55.0% | |
| GTGGAAAGGTAAGCCTGCCA+AGG | + | chr3.2:78807750-78807769 | MS.gene06531:CDS | 55.0% | |
| TGCCAAACGGTCCCTCACAG+CGG | - | chr3.2:78808100-78808119 | None:intergenic | 60.0% | |
| GACCGCTGTGAGGGACCGTT+TGG | + | chr3.2:78808095-78808114 | MS.gene06531:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 78807226 | 78808722 | 78807226 | ID=MS.gene06531 |
| chr3.2 | mRNA | 78807226 | 78808722 | 78807226 | ID=MS.gene06531.t1;Parent=MS.gene06531 |
| chr3.2 | exon | 78807226 | 78807244 | 78807226 | ID=MS.gene06531.t1.exon1;Parent=MS.gene06531.t1 |
| chr3.2 | CDS | 78807226 | 78807244 | 78807226 | ID=cds.MS.gene06531.t1;Parent=MS.gene06531.t1 |
| chr3.2 | exon | 78807313 | 78807396 | 78807313 | ID=MS.gene06531.t1.exon2;Parent=MS.gene06531.t1 |
| chr3.2 | CDS | 78807313 | 78807396 | 78807313 | ID=cds.MS.gene06531.t1;Parent=MS.gene06531.t1 |
| chr3.2 | exon | 78807659 | 78807814 | 78807659 | ID=MS.gene06531.t1.exon3;Parent=MS.gene06531.t1 |
| chr3.2 | CDS | 78807659 | 78807814 | 78807659 | ID=cds.MS.gene06531.t1;Parent=MS.gene06531.t1 |
| chr3.2 | exon | 78808022 | 78808248 | 78808022 | ID=MS.gene06531.t1.exon4;Parent=MS.gene06531.t1 |
| chr3.2 | CDS | 78808022 | 78808248 | 78808022 | ID=cds.MS.gene06531.t1;Parent=MS.gene06531.t1 |
| chr3.2 | exon | 78808561 | 78808722 | 78808561 | ID=MS.gene06531.t1.exon5;Parent=MS.gene06531.t1 |
| chr3.2 | CDS | 78808561 | 78808722 | 78808561 | ID=cds.MS.gene06531.t1;Parent=MS.gene06531.t1 |
| Gene Sequence |
| Protein sequence |
