Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049402.t1 | KEH35544.1 | 96.7 | 209 | 7 | 0 | 7 | 215 | 21 | 229 | 3.70E-105 | 391 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049402.t1 | Q8VZW3 | 62.7 | 209 | 77 | 1 | 7 | 214 | 1 | 209 | 1.3e-66 | 254.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049402.t1 | A0A072V0J3 | 96.7 | 209 | 7 | 0 | 7 | 215 | 21 | 229 | 2.6e-105 | 391.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049259 | MS.gene049402 | 0.823892 | 1.08E-53 | -1.69E-46 |
| MS.gene049402 | MS.gene050165 | -0.80445 | 2.15E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene050612 | -0.802207 | 6.26E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene050832 | 0.82237 | 2.46E-53 | -1.69E-46 |
| MS.gene049402 | MS.gene050833 | 0.816465 | 5.45E-52 | -1.69E-46 |
| MS.gene049402 | MS.gene051044 | 0.811206 | 7.86E-51 | -1.69E-46 |
| MS.gene049402 | MS.gene051138 | 0.812763 | 3.60E-51 | -1.69E-46 |
| MS.gene049402 | MS.gene056224 | 0.809475 | 1.86E-50 | -1.69E-46 |
| MS.gene049402 | MS.gene056856 | 0.820659 | 6.10E-53 | -1.69E-46 |
| MS.gene049402 | MS.gene057246 | -0.803696 | 3.08E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene058603 | 0.80098 | 1.12E-48 | -1.69E-46 |
| MS.gene049402 | MS.gene059102 | 0.831143 | 1.97E-55 | -1.69E-46 |
| MS.gene049402 | MS.gene060823 | 0.801981 | 6.97E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene062071 | 0.807024 | 6.19E-50 | -1.69E-46 |
| MS.gene049402 | MS.gene06531 | 0.904526 | 1.12E-79 | -1.69E-46 |
| MS.gene049402 | MS.gene065424 | 0.845188 | 4.75E-59 | -1.69E-46 |
| MS.gene049402 | MS.gene06775 | 0.847093 | 1.44E-59 | -1.69E-46 |
| MS.gene049402 | MS.gene068320 | 0.821183 | 4.62E-53 | -1.69E-46 |
| MS.gene049402 | MS.gene070177 | 0.817128 | 3.87E-52 | -1.69E-46 |
| MS.gene049402 | MS.gene071942 | 0.820028 | 8.52E-53 | -1.69E-46 |
| MS.gene049402 | MS.gene072378 | 0.814763 | 1.31E-51 | -1.69E-46 |
| MS.gene049402 | MS.gene073183 | 0.806196 | 9.25E-50 | -1.69E-46 |
| MS.gene049402 | MS.gene08407 | 0.803265 | 3.79E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene09072 | 0.802518 | 5.40E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene20808 | 0.808037 | 3.77E-50 | -1.69E-46 |
| MS.gene049402 | MS.gene21595 | 0.800205 | 1.61E-48 | -1.69E-46 |
| MS.gene049402 | MS.gene23097 | 0.819137 | 1.36E-52 | -1.69E-46 |
| MS.gene049402 | MS.gene24420 | 0.842388 | 2.67E-58 | -1.69E-46 |
| MS.gene049402 | MS.gene25062 | 0.840524 | 8.26E-58 | -1.69E-46 |
| MS.gene049402 | MS.gene25899 | 0.805286 | 1.44E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene28629 | 0.815657 | 8.26E-52 | -1.69E-46 |
| MS.gene049402 | MS.gene30459 | 0.802173 | 6.36E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene33336 | 0.827549 | 1.47E-54 | -1.69E-46 |
| MS.gene049402 | MS.gene33696 | 0.801153 | 1.03E-48 | -1.69E-46 |
| MS.gene049402 | MS.gene34589 | 0.816323 | 5.87E-52 | -1.69E-46 |
| MS.gene049402 | MS.gene35208 | 0.813165 | 2.94E-51 | -1.69E-46 |
| MS.gene049402 | MS.gene35546 | 0.821982 | 3.02E-53 | -1.69E-46 |
| MS.gene049402 | MS.gene38706 | 0.802508 | 5.43E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene39535 | 0.80147 | 8.87E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene41367 | 0.805035 | 1.62E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene46027 | 0.802607 | 5.18E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene46433 | 0.809491 | 1.84E-50 | -1.69E-46 |
| MS.gene049402 | MS.gene46537 | 0.803437 | 3.49E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene47349 | 0.807568 | 4.74E-50 | -1.69E-46 |
| MS.gene049402 | MS.gene47576 | 0.803339 | 3.66E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene47883 | 0.805531 | 1.28E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene51018 | 0.805482 | 1.31E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene51024 | 0.802035 | 6.79E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene51748 | 0.806698 | 7.25E-50 | -1.69E-46 |
| MS.gene049402 | MS.gene52027 | 0.809712 | 1.65E-50 | -1.69E-46 |
| MS.gene049402 | MS.gene54709 | -0.81317 | 2.93E-51 | -1.69E-46 |
| MS.gene049402 | MS.gene55078 | 0.818783 | 1.64E-52 | -1.69E-46 |
| MS.gene049402 | MS.gene56389 | 0.809014 | 2.33E-50 | -1.69E-46 |
| MS.gene049402 | MS.gene66184 | 0.807555 | 4.77E-50 | -1.69E-46 |
| MS.gene049402 | MS.gene67145 | 0.8315 | 1.61E-55 | -1.69E-46 |
| MS.gene049402 | MS.gene72411 | 0.816919 | 4.31E-52 | -1.69E-46 |
| MS.gene049402 | MS.gene72992 | 0.802909 | 4.49E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene75561 | -0.801377 | 9.27E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene79519 | 0.817922 | 2.57E-52 | -1.69E-46 |
| MS.gene049402 | MS.gene83774 | 0.801312 | 9.55E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene84947 | 0.802072 | 6.67E-49 | -1.69E-46 |
| MS.gene049402 | MS.gene85638 | 0.809582 | 1.76E-50 | -1.69E-46 |
| MS.gene049402 | MS.gene92255 | 0.807017 | 6.21E-50 | -1.69E-46 |
| MS.gene049402 | MS.gene92392 | 0.824099 | 9.70E-54 | -1.69E-46 |
| MS.gene049402 | MS.gene94262 | 0.821928 | 3.11E-53 | -1.69E-46 |
| MS.gene049402 | MS.gene95132 | 0.824219 | 9.09E-54 | -1.69E-46 |
| MS.gene049402 | MS.gene96299 | 0.821163 | 4.67E-53 | -1.69E-46 |
| MS.gene049402 | MS.gene97131 | 0.816275 | 6.02E-52 | -1.69E-46 |
| MS.gene049402 | MS.gene97682 | 0.838754 | 2.38E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049402.t1 | MTR_3g093980 | 96.651 | 209 | 7 | 0 | 7 | 215 | 21 | 229 | 2.57e-147 | 409 |
| MS.gene049402.t1 | MTR_3g093980 | 97.175 | 177 | 5 | 0 | 39 | 215 | 1 | 177 | 1.31e-125 | 352 |
| MS.gene049402.t1 | MTR_3g093980 | 95.541 | 157 | 7 | 0 | 7 | 163 | 1 | 157 | 1.53e-97 | 280 |
| MS.gene049402.t1 | MTR_1g115820 | 32.075 | 212 | 132 | 5 | 12 | 215 | 8 | 215 | 6.12e-21 | 87.4 |
| MS.gene049402.t1 | MTR_1g115820 | 35.220 | 159 | 96 | 3 | 12 | 166 | 8 | 163 | 8.06e-20 | 82.8 |
| MS.gene049402.t1 | MTR_1g115850 | 28.019 | 207 | 139 | 4 | 12 | 211 | 11 | 214 | 1.01e-18 | 81.3 |
| MS.gene049402.t1 | MTR_1g115840 | 29.048 | 210 | 137 | 6 | 12 | 213 | 11 | 216 | 1.46e-18 | 80.9 |
| MS.gene049402.t1 | MTR_1g115890 | 27.404 | 208 | 143 | 5 | 11 | 211 | 8 | 214 | 9.54e-18 | 79.0 |
| MS.gene049402.t1 | MTR_1g115870 | 28.972 | 214 | 143 | 6 | 6 | 211 | 2 | 214 | 3.71e-17 | 77.4 |
| MS.gene049402.t1 | MTR_1g115850 | 27.103 | 214 | 139 | 5 | 12 | 211 | 11 | 221 | 4.48e-16 | 74.3 |
| MS.gene049402.t1 | MTR_2g072510 | 28.000 | 200 | 133 | 6 | 16 | 213 | 86 | 276 | 7.32e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049402.t1 | AT5G05270 | 62.679 | 209 | 77 | 1 | 7 | 214 | 1 | 209 | 7.61e-84 | 248 |
| MS.gene049402.t1 | AT5G05270 | 62.679 | 209 | 77 | 1 | 7 | 214 | 1 | 209 | 7.61e-84 | 248 |
| MS.gene049402.t1 | AT3G55120 | 30.374 | 214 | 129 | 8 | 14 | 215 | 21 | 226 | 8.49e-17 | 76.6 |
| MS.gene049402.t1 | AT1G53520 | 26.344 | 186 | 131 | 4 | 29 | 213 | 106 | 286 | 1.67e-15 | 73.9 |
| MS.gene049402.t1 | AT5G66230 | 29.108 | 213 | 125 | 8 | 14 | 215 | 11 | 208 | 8.81e-15 | 72.8 |
| MS.gene049402.t1 | AT5G66220 | 29.032 | 155 | 102 | 3 | 65 | 215 | 9 | 159 | 1.70e-13 | 66.2 |
Find 59 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGATGCTCTCATTTC+TGG | 0.108688 | 3.1:+75170966 | MS.gene049402:CDS |
| CTATTCAATTGGGGTTTATT+TGG | 0.127513 | 3.1:+75170872 | MS.gene049402:CDS |
| AGAATTTCACTTGGAGAAAA+TGG | 0.134571 | 3.1:-75170851 | None:intergenic |
| TGTTGTGATTAAAGAGATTA+AGG | 0.213746 | 3.1:+75171220 | MS.gene049402:CDS |
| TCCTTCAACCATTACATCTT+TGG | 0.255062 | 3.1:+75171886 | MS.gene049402:CDS |
| CAAGTGAAATTCTATTCAAT+TGG | 0.286514 | 3.1:+75170861 | MS.gene049402:CDS |
| AATACAGATTGTGGTATCTT+TGG | 0.300414 | 3.1:+75171772 | MS.gene049402:intron |
| TGCAAGTGGCTTGCTACTTC+AGG | 0.308776 | 3.1:-75170897 | None:intergenic |
| AAGTGAAATTCTATTCAATT+GGG | 0.340514 | 3.1:+75170862 | MS.gene049402:CDS |
| AGTGGCTAGTGAAACTGTTT+TGG | 0.373529 | 3.1:+75170484 | MS.gene049402:intron |
| GAGATTAAGGGTGCACAATA+TGG | 0.383753 | 3.1:+75171233 | MS.gene049402:CDS |
| GGATGAAGAAGAAGAAGCTT+TGG | 0.390087 | 3.1:+75171310 | MS.gene049402:CDS |
| TTGTCTTCCAACTCCTTGGC+AGG | 0.403272 | 3.1:-75170936 | None:intergenic |
| TCTGCAGTTGGAGAGTTTGC+TGG | 0.409543 | 3.1:-75171398 | None:intergenic |
| ATTAAGAAATGGTATCTTGC+TGG | 0.410454 | 3.1:+75171848 | MS.gene049402:CDS |
| ACCAAGGAGAGAAAGGGTTT+TGG | 0.417350 | 3.1:-75170543 | None:intergenic |
| GACCGCTGTGAGGGACCGTT+TGG | 0.422176 | 3.1:+75171268 | MS.gene049402:CDS |
| ACCAAAACCCTTTCTCTCCT+TGG | 0.424712 | 3.1:+75170542 | MS.gene049402:CDS |
| CTTAATAGTCTCTACTACAT+TGG | 0.428653 | 3.1:-75171831 | None:intergenic |
| TTGGTAGTAGTGATCTTTGA+AGG | 0.439710 | 3.1:-75170524 | None:intergenic |
| TGCTACTTTACCTCTGCAGT+TGG | 0.445412 | 3.1:-75171410 | None:intergenic |
| GTTGTGATTAAAGAGATTAA+GGG | 0.453545 | 3.1:+75171221 | MS.gene049402:CDS |
| TTCATCCTCATATTTGTCAT+CGG | 0.460901 | 3.1:-75171294 | None:intergenic |
| ATCATTGTCTTCCAACTCCT+TGG | 0.461782 | 3.1:-75170940 | None:intergenic |
| TAGTAGAGACTATTAAGAAA+TGG | 0.472191 | 3.1:+75171837 | MS.gene049402:CDS |
| GTTTCTTGAAGTACTTAGAC+TGG | 0.476418 | 3.1:-75171352 | None:intergenic |
| TACCATGACCAAGGAGAGAA+AGG | 0.488761 | 3.1:-75170550 | None:intergenic |
| CTGCAGTTGGAGAGTTTGCT+GGG | 0.497551 | 3.1:-75171397 | None:intergenic |
| GCCAAAGATGTAATGGTTGA+AGG | 0.506201 | 3.1:-75171887 | None:intergenic |
| TGGATAATTCCTCTGAGAGA+TGG | 0.511898 | 3.1:-75171913 | None:intergenic |
| CAATTGAATAGAATTTCACT+TGG | 0.511986 | 3.1:-75170860 | None:intergenic |
| AGTCTAATTGCCTTCTCCAC+AGG | 0.518956 | 3.1:-75171197 | None:intergenic |
| CAGATTGTGGTATCTTTGGA+AGG | 0.521938 | 3.1:+75171776 | MS.gene049402:intron |
| TACCTTTCCACTGTTGCAAG+TGG | 0.522349 | 3.1:-75170911 | None:intergenic |
| ATGTGCAGCTCCTGTGGAGA+AGG | 0.525875 | 3.1:+75171187 | MS.gene049402:intron |
| ATGGGTAGCCAAAGATGTAA+TGG | 0.528630 | 3.1:-75171894 | None:intergenic |
| GGATAATTCCTCTGAGAGAT+GGG | 0.538139 | 3.1:-75171912 | None:intergenic |
| ACCATGACCAAGGAGAGAAA+GGG | 0.540135 | 3.1:-75170549 | None:intergenic |
| ACCCTTTCTCTCCTTGGTCA+TGG | 0.540415 | 3.1:+75170548 | MS.gene049402:CDS |
| GTGAATATGTGCAGCTCCTG+TGG | 0.541590 | 3.1:+75171181 | MS.gene049402:intron |
| AATGGTATCTTGCTGGCTCA+AGG | 0.546466 | 3.1:+75171855 | MS.gene049402:CDS |
| ATTTGTCATCGGCTGCCAAA+CGG | 0.557673 | 3.1:-75171283 | None:intergenic |
| AGTGAAATTCTATTCAATTG+GGG | 0.558547 | 3.1:+75170863 | MS.gene049402:CDS |
| TGGTAGTAGTGATCTTTGAA+GGG | 0.566326 | 3.1:-75170523 | None:intergenic |
| ATGGTATCTTGCTGGCTCAA+GGG | 0.567607 | 3.1:+75171856 | MS.gene049402:CDS |
| AGGTAAGCCTGCCAAGGAGT+TGG | 0.569479 | 3.1:+75170929 | MS.gene049402:CDS |
| TAGCAAGCCACTTGCAACAG+TGG | 0.573061 | 3.1:+75170904 | MS.gene049402:CDS |
| GGCAGCCGATGACAAATATG+AGG | 0.581635 | 3.1:+75171289 | MS.gene049402:CDS |
| TTTGATAGGGATTACCGACA+TGG | 0.591441 | 3.1:+75170824 | MS.gene049402:intron |
| AGCCACTTGCAACAGTGGAA+AGG | 0.600159 | 3.1:+75170909 | MS.gene049402:CDS |
| AGATTGTGGTATCTTTGGAA+GGG | 0.601655 | 3.1:+75171777 | MS.gene049402:intron |
| GTGGAAAGGTAAGCCTGCCA+AGG | 0.623835 | 3.1:+75170923 | MS.gene049402:CDS |
| GAGAAAATGGATCTCCATGT+CGG | 0.629435 | 3.1:-75170838 | None:intergenic |
| TCAGATTGAGACCGCTGTGA+GGG | 0.629678 | 3.1:+75171259 | MS.gene049402:CDS |
| AGCAAACTCTCCAACTGCAG+AGG | 0.645259 | 3.1:+75171400 | MS.gene049402:CDS |
| TGCCAAACGGTCCCTCACAG+CGG | 0.689378 | 3.1:-75171270 | None:intergenic |
| TTTGGCTACCCATCTCTCAG+AGG | 0.689828 | 3.1:+75171904 | MS.gene049402:CDS |
| TTCAGATTGAGACCGCTGTG+AGG | 0.696200 | 3.1:+75171258 | MS.gene049402:CDS |
| GTAGCAACTTACCATGACCA+AGG | 0.712424 | 3.1:-75170559 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAATAAATTGAGGA+AGG | + | chr3.1:75171564-75171583 | MS.gene049402:intron | 15.0% |
| !! | CAACATTTATGATATAATTA+AGG | - | chr3.1:75171127-75171146 | None:intergenic | 15.0% |
| !! | TTTAAAGAAAAAGTTTAAGT+TGG | - | chr3.1:75171546-75171565 | None:intergenic | 15.0% |
| !!! | AATTAGTTTAAGTTGATTTT+AGG | + | chr3.1:75171477-75171496 | MS.gene049402:intron | 15.0% |
| !! | AAAGAAGTTGGATTATAAAA+GGG | - | chr3.1:75171003-75171022 | None:intergenic | 20.0% |
| !! | AAGATATTATTGAAAGAAGT+TGG | - | chr3.1:75171015-75171034 | None:intergenic | 20.0% |
| !! | AAGTGAAATTCTATTCAATT+GGG | + | chr3.1:75170862-75170881 | MS.gene049402:CDS | 20.0% |
| !! | TCAAATCAAGAAAAAGAATT+TGG | - | chr3.1:75170613-75170632 | None:intergenic | 20.0% |
| !! | TTGTTAATATTAGTTGAAGT+AGG | - | chr3.1:75171711-75171730 | None:intergenic | 20.0% |
| !!! | AAAAAGTTTAAGTTGGTTAT+AGG | - | chr3.1:75171539-75171558 | None:intergenic | 20.0% |
| !!! | AACTAATTCTAAGAATGAAT+AGG | - | chr3.1:75171465-75171484 | None:intergenic | 20.0% |
| !!! | CTTGATTTGATTTTGAATAT+GGG | + | chr3.1:75170623-75170642 | MS.gene049402:intron | 20.0% |
| !!! | TCTTGATTTGATTTTGAATA+TGG | + | chr3.1:75170622-75170641 | MS.gene049402:intron | 20.0% |
| !!! | TTGATTTGATTTTGAATATG+GGG | + | chr3.1:75170624-75170643 | MS.gene049402:intron | 20.0% |
| ! | AGTGAAATTCTATTCAATTG+GGG | + | chr3.1:75170863-75170882 | MS.gene049402:CDS | 25.0% |
| ! | CAAGTGAAATTCTATTCAAT+TGG | + | chr3.1:75170861-75170880 | MS.gene049402:CDS | 25.0% |
| ! | CAATTGAATAGAATTTCACT+TGG | - | chr3.1:75170863-75170882 | None:intergenic | 25.0% |
| ! | GAAAGAAGTTGGATTATAAA+AGG | - | chr3.1:75171004-75171023 | None:intergenic | 25.0% |
| ! | GAATGAATAGGATCAATTAT+AGG | - | chr3.1:75171453-75171472 | None:intergenic | 25.0% |
| ! | GAATTTGGAAGAATTTCAAA+AGG | - | chr3.1:75170598-75170617 | None:intergenic | 25.0% |
| ! | GAGCTCATCTATTTATTATT+TGG | + | chr3.1:75171075-75171094 | MS.gene049402:intron | 25.0% |
| ! | GTTACAAAATCAAACTCTTA+CGG | + | chr3.1:75171662-75171681 | MS.gene049402:intron | 25.0% |
| ! | GTTGTGATTAAAGAGATTAA+GGG | + | chr3.1:75171221-75171240 | MS.gene049402:CDS | 25.0% |
| ! | TAGTAGAGACTATTAAGAAA+TGG | + | chr3.1:75171837-75171856 | MS.gene049402:CDS | 25.0% |
| ! | TATGAGATTTGAATTTCATC+CGG | + | chr3.1:75171640-75171659 | MS.gene049402:intron | 25.0% |
| ! | TGTTGTGATTAAAGAGATTA+AGG | + | chr3.1:75171220-75171239 | MS.gene049402:CDS | 25.0% |
| !! | GGAAAATCAAGTTATTGATT+TGG | - | chr3.1:75170801-75170820 | None:intergenic | 25.0% |
| !! | TTGATTTTCCTCTTTTGATA+GGG | + | chr3.1:75170811-75170830 | MS.gene049402:intron | 25.0% |
| !!! | TAAGAGTTTGATTTTGTAAC+CGG | - | chr3.1:75171662-75171681 | None:intergenic | 25.0% |
| AATACAGATTGTGGTATCTT+TGG | + | chr3.1:75171772-75171791 | MS.gene049402:intron | 30.0% | |
| AGAATTTCACTTGGAGAAAA+TGG | - | chr3.1:75170854-75170873 | None:intergenic | 30.0% | |
| ATTAAGAAATGGTATCTTGC+TGG | + | chr3.1:75171848-75171867 | MS.gene049402:CDS | 30.0% | |
| CTATTCAATTGGGGTTTATT+TGG | + | chr3.1:75170872-75170891 | MS.gene049402:CDS | 30.0% | |
| CTTAATAGTCTCTACTACAT+TGG | - | chr3.1:75171834-75171853 | None:intergenic | 30.0% | |
| GTTTGTGAATTTGATTACAG+TGG | + | chr3.1:75170466-75170485 | MS.gene049402:intron | 30.0% | |
| TTCATCCTCATATTTGTCAT+CGG | - | chr3.1:75171297-75171316 | None:intergenic | 30.0% | |
| ! | CTTGATTTTCCTCTTTTGAT+AGG | + | chr3.1:75170810-75170829 | MS.gene049402:intron | 30.0% |
| !! | GTTTGTTGTAATACAGATTG+TGG | + | chr3.1:75171763-75171782 | MS.gene049402:intron | 30.0% |
| CTAAAAGTAGCAAGAGATGT+AGG | + | chr3.1:75170741-75170760 | MS.gene049402:intron | 35.0% | |
| TCCTTCAACCATTACATCTT+TGG | + | chr3.1:75171886-75171905 | MS.gene049402:CDS | 35.0% | |
| TGGTAGTAGTGATCTTTGAA+GGG | - | chr3.1:75170526-75170545 | None:intergenic | 35.0% | |
| TTCTTTGATGCTCTCATTTC+TGG | + | chr3.1:75170966-75170985 | MS.gene049402:CDS | 35.0% | |
| ! | AGATTGTGGTATCTTTGGAA+GGG | + | chr3.1:75171777-75171796 | MS.gene049402:intron | 35.0% |
| ! | GTTTCTTGAAGTACTTAGAC+TGG | - | chr3.1:75171355-75171374 | None:intergenic | 35.0% |
| ! | TTGGTAGTAGTGATCTTTGA+AGG | - | chr3.1:75170527-75170546 | None:intergenic | 35.0% |
| !! | AGTTGATTTTAGGCACAAGT+TGG | + | chr3.1:75171487-75171506 | MS.gene049402:intron | 35.0% |
| ATCATTGTCTTCCAACTCCT+TGG | - | chr3.1:75170943-75170962 | None:intergenic | 40.0% | |
| ATGGGTAGCCAAAGATGTAA+TGG | - | chr3.1:75171897-75171916 | None:intergenic | 40.0% | |
| CAGATTGTGGTATCTTTGGA+AGG | + | chr3.1:75171776-75171795 | MS.gene049402:intron | 40.0% | |
| GAGAAAATGGATCTCCATGT+CGG | - | chr3.1:75170841-75170860 | None:intergenic | 40.0% | |
| GCCAAAGATGTAATGGTTGA+AGG | - | chr3.1:75171890-75171909 | None:intergenic | 40.0% | |
| GGATGAAGAAGAAGAAGCTT+TGG | + | chr3.1:75171310-75171329 | MS.gene049402:CDS | 40.0% | |
| GTAAAGTAGCAAGCAGCATT+AGG | + | chr3.1:75171422-75171441 | MS.gene049402:intron | 40.0% | |
| TCGGTAATCCCTATCAAAAG+AGG | - | chr3.1:75170822-75170841 | None:intergenic | 40.0% | |
| TTTGATAGGGATTACCGACA+TGG | + | chr3.1:75170824-75170843 | MS.gene049402:intron | 40.0% | |
| ! | AGTGGCTAGTGAAACTGTTT+TGG | + | chr3.1:75170484-75170503 | MS.gene049402:intron | 40.0% |
| ! | GAGATTAAGGGTGCACAATA+TGG | + | chr3.1:75171233-75171252 | MS.gene049402:CDS | 40.0% |
| ! | GGATAATTCCTCTGAGAGAT+GGG | - | chr3.1:75171915-75171934 | None:intergenic | 40.0% |
| ! | TGGATAATTCCTCTGAGAGA+TGG | - | chr3.1:75171916-75171935 | None:intergenic | 40.0% |
| !!! | GATTTTAGGCACAAGTTGGT+TGG | + | chr3.1:75171491-75171510 | MS.gene049402:intron | 40.0% |
| ACCAAAACCCTTTCTCTCCT+TGG | + | chr3.1:75170542-75170561 | MS.gene049402:CDS | 45.0% | |
| ACCATGACCAAGGAGAGAAA+GGG | - | chr3.1:75170552-75170571 | None:intergenic | 45.0% | |
| AGTCTAATTGCCTTCTCCAC+AGG | - | chr3.1:75171200-75171219 | None:intergenic | 45.0% | |
| GTAGCAACTTACCATGACCA+AGG | - | chr3.1:75170562-75170581 | None:intergenic | 45.0% | |
| TACCATGACCAAGGAGAGAA+AGG | - | chr3.1:75170553-75170572 | None:intergenic | 45.0% | |
| TACCTTTCCACTGTTGCAAG+TGG | - | chr3.1:75170914-75170933 | None:intergenic | 45.0% | |
| ! | ACCAAGGAGAGAAAGGGTTT+TGG | - | chr3.1:75170546-75170565 | None:intergenic | 45.0% |
| ! | ATTTGTCATCGGCTGCCAAA+CGG | - | chr3.1:75171286-75171305 | None:intergenic | 45.0% |
| !! | AATGGTATCTTGCTGGCTCA+AGG | + | chr3.1:75171855-75171874 | MS.gene049402:CDS | 45.0% |
| !! | ATGGTATCTTGCTGGCTCAA+GGG | + | chr3.1:75171856-75171875 | MS.gene049402:CDS | 45.0% |
| !! | TGCTACTTTACCTCTGCAGT+TGG | - | chr3.1:75171413-75171432 | None:intergenic | 45.0% |
| !! | TTTAAAAAATAAATAAATTG+AGG | + | chr3.1:75171560-75171579 | MS.gene049402:intron | 5.0% |
| ACCCTTTCTCTCCTTGGTCA+TGG | + | chr3.1:75170548-75170567 | MS.gene049402:CDS | 50.0% | |
| AGCAAACTCTCCAACTGCAG+AGG | + | chr3.1:75171400-75171419 | MS.gene049402:CDS | 50.0% | |
| AGCCACTTGCAACAGTGGAA+AGG | + | chr3.1:75170909-75170928 | MS.gene049402:CDS | 50.0% | |
| GGCAGCCGATGACAAATATG+AGG | + | chr3.1:75171289-75171308 | MS.gene049402:CDS | 50.0% | |
| GTGAATATGTGCAGCTCCTG+TGG | + | chr3.1:75171181-75171200 | MS.gene049402:intron | 50.0% | |
| TAGCAAGCCACTTGCAACAG+TGG | + | chr3.1:75170904-75170923 | MS.gene049402:CDS | 50.0% | |
| TCAGATTGAGACCGCTGTGA+GGG | + | chr3.1:75171259-75171278 | MS.gene049402:CDS | 50.0% | |
| TCTGCAGTTGGAGAGTTTGC+TGG | - | chr3.1:75171401-75171420 | None:intergenic | 50.0% | |
| TTCAGATTGAGACCGCTGTG+AGG | + | chr3.1:75171258-75171277 | MS.gene049402:CDS | 50.0% | |
| TTGTCTTCCAACTCCTTGGC+AGG | - | chr3.1:75170939-75170958 | None:intergenic | 50.0% | |
| TTTGGCTACCCATCTCTCAG+AGG | + | chr3.1:75171904-75171923 | MS.gene049402:CDS | 50.0% | |
| ! | CTGCAGTTGGAGAGTTTGCT+GGG | - | chr3.1:75171400-75171419 | None:intergenic | 50.0% |
| !! | TGCAAGTGGCTTGCTACTTC+AGG | - | chr3.1:75170900-75170919 | None:intergenic | 50.0% |
| AGGTAAGCCTGCCAAGGAGT+TGG | + | chr3.1:75170929-75170948 | MS.gene049402:CDS | 55.0% | |
| ATGTGCAGCTCCTGTGGAGA+AGG | + | chr3.1:75171187-75171206 | MS.gene049402:intron | 55.0% | |
| GTGGAAAGGTAAGCCTGCCA+AGG | + | chr3.1:75170923-75170942 | MS.gene049402:CDS | 55.0% | |
| TGCCAAACGGTCCCTCACAG+CGG | - | chr3.1:75171273-75171292 | None:intergenic | 60.0% | |
| GACCGCTGTGAGGGACCGTT+TGG | + | chr3.1:75171268-75171287 | MS.gene049402:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 75170403 | 75171940 | 75170403 | ID=MS.gene049402 |
| chr3.1 | mRNA | 75170403 | 75171940 | 75170403 | ID=MS.gene049402.t1;Parent=MS.gene049402 |
| chr3.1 | exon | 75170403 | 75170421 | 75170403 | ID=MS.gene049402.t1.exon1;Parent=MS.gene049402.t1 |
| chr3.1 | CDS | 75170403 | 75170421 | 75170403 | ID=cds.MS.gene049402.t1;Parent=MS.gene049402.t1 |
| chr3.1 | exon | 75170486 | 75170569 | 75170486 | ID=MS.gene049402.t1.exon2;Parent=MS.gene049402.t1 |
| chr3.1 | CDS | 75170486 | 75170569 | 75170486 | ID=cds.MS.gene049402.t1;Parent=MS.gene049402.t1 |
| chr3.1 | exon | 75170832 | 75170987 | 75170832 | ID=MS.gene049402.t1.exon3;Parent=MS.gene049402.t1 |
| chr3.1 | CDS | 75170832 | 75170987 | 75170832 | ID=cds.MS.gene049402.t1;Parent=MS.gene049402.t1 |
| chr3.1 | exon | 75171195 | 75171421 | 75171195 | ID=MS.gene049402.t1.exon4;Parent=MS.gene049402.t1 |
| chr3.1 | CDS | 75171195 | 75171421 | 75171195 | ID=cds.MS.gene049402.t1;Parent=MS.gene049402.t1 |
| chr3.1 | exon | 75171779 | 75171940 | 75171779 | ID=MS.gene049402.t1.exon5;Parent=MS.gene049402.t1 |
| chr3.1 | CDS | 75171779 | 75171940 | 75171779 | ID=cds.MS.gene049402.t1;Parent=MS.gene049402.t1 |
| Gene Sequence |
| Protein sequence |
