AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055124


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055124.t1 MTR_7g065980 98.418 569 9 0 4 572 3 571 0.0 1162
MS.gene055124.t1 MTR_7g065970 64.125 577 195 5 1 572 1 570 0.0 733
MS.gene055124.t1 MTR_4g019225 56.491 570 234 9 10 572 10 572 0.0 657
MS.gene055124.t1 MTR_5g083360 45.789 570 284 9 14 572 12 567 0.0 531
MS.gene055124.t1 MTR_5g073210 45.645 574 289 9 5 572 4 560 0.0 528
MS.gene055124.t1 MTR_7g062250 45.679 567 290 9 14 572 22 578 4.32e-177 513
MS.gene055124.t1 MTR_5g020620 45.841 565 281 12 12 572 18 561 1.54e-174 506
MS.gene055124.t1 MTR_7g060460 44.387 579 299 10 8 572 12 581 1.74e-172 501
MS.gene055124.t1 MTR_7g058690 44.898 588 291 13 6 572 5 580 2.17e-172 501
MS.gene055124.t1 MTR_7g458880 44.149 564 296 8 19 572 26 580 2.66e-172 501
MS.gene055124.t1 MTR_5g069680 44.599 574 297 9 1 572 4 558 9.29e-172 498
MS.gene055124.t1 MTR_2g008330 45.422 557 289 7 21 572 33 579 1.29e-171 499
MS.gene055124.t1 MTR_3g101635 47.069 563 277 10 6 562 9 556 4.41e-171 497
MS.gene055124.t1 MTR_4g015120 45.688 545 279 8 30 572 28 557 6.49e-170 494
MS.gene055124.t1 MTR_3g101640 47.160 581 283 14 2 572 5 571 1.51e-169 493
MS.gene055124.t1 MTR_4g064530 45.191 551 287 8 13 558 31 571 8.32e-169 492
MS.gene055124.t1 MTR_5g020600 44.858 564 287 11 14 572 22 566 1.47e-167 488
MS.gene055124.t1 MTR_7g062310 43.649 559 297 8 23 572 44 593 1.14e-166 487
MS.gene055124.t1 MTR_3g462760 44.587 545 282 10 30 572 30 556 1.04e-165 483
MS.gene055124.t1 MTR_5g081810 45.941 542 269 11 35 572 8 529 1.63e-162 474
MS.gene055124.t1 MTR_3g071890 46.388 526 254 12 14 528 18 526 1.94e-162 475
MS.gene055124.t1 MTR_4g064530 44.508 528 276 9 13 533 31 548 1.01e-155 457
MS.gene055124.t1 MTR_8g027375 41.409 582 316 10 1 572 5 571 9.10e-153 450
MS.gene055124.t1 MTR_8g091390 29.749 558 317 17 41 563 49 566 2.17e-65 224
MS.gene055124.t1 MTR_3g078700 28.623 559 349 15 1 550 1 518 8.39e-54 191
MS.gene055124.t1 MTR_3g078740 29.167 600 342 25 1 550 1 567 9.99e-54 192
MS.gene055124.t1 MTR_5g081790 39.194 273 149 7 258 530 165 420 2.43e-52 185
MS.gene055124.t1 MTR_5g081790 47.826 161 75 3 12 163 9 169 1.32e-37 144
MS.gene055124.t1 MTR_1g090707 26.712 584 350 19 13 572 7 536 3.37e-46 171
MS.gene055124.t1 MTR_3g078730 26.916 561 352 16 1 550 4 517 1.96e-45 169
MS.gene055124.t1 MTR_1g026410 29.622 503 301 20 40 537 43 497 4.14e-41 156
MS.gene055124.t1 MTR_3g115050 29.249 506 299 20 40 537 44 498 4.71e-41 156
MS.gene055124.t1 MTR_8g479380 27.223 551 328 19 12 545 10 504 1.85e-40 154
MS.gene055124.t1 MTR_4g049390 26.962 497 312 16 40 532 41 490 7.89e-39 150
MS.gene055124.t1 MTR_8g479390 26.346 520 333 14 29 545 34 506 8.60e-39 150
MS.gene055124.t1 MTR_4g101650 28.796 573 358 20 12 572 15 549 1.16e-37 147
MS.gene055124.t1 MTR_4g075690 28.169 497 305 19 40 532 44 492 3.29e-37 145
MS.gene055124.t1 MTR_4g048350 26.559 497 313 18 40 532 41 489 3.33e-36 142
MS.gene055124.t1 MTR_2g088080 26.886 517 309 16 29 532 33 493 3.70e-35 139
MS.gene055124.t1 MTR_3g008580 26.876 573 369 18 13 572 16 551 4.18e-35 140
MS.gene055124.t1 MTR_3g083430 27.052 536 335 17 29 554 28 517 4.84e-35 139
MS.gene055124.t1 MTR_3g083450 27.052 536 335 18 29 554 29 518 1.59e-34 137
MS.gene055124.t1 MTR_3g083400 26.866 536 336 17 29 554 28 517 3.96e-34 136
MS.gene055124.t1 MTR_3g083440 26.679 536 337 17 29 554 28 517 5.63e-34 136
MS.gene055124.t1 MTR_4g083210 27.057 547 340 19 11 545 5 504 9.21e-34 135
MS.gene055124.t1 MTR_3g083390 26.679 536 337 17 29 554 28 517 1.86e-33 134
MS.gene055124.t1 MTR_5g018270 25.720 521 318 16 29 538 34 496 9.52e-33 132
MS.gene055124.t1 MTR_4g083190 26.902 539 315 23 44 562 45 524 5.57e-32 130
MS.gene055124.t1 MTR_3g083410 26.255 518 326 17 47 554 10 481 8.82e-32 129
MS.gene055124.t1 MTR_8g073840 39.572 187 74 5 21 205 25 174 2.53e-31 123
MS.gene055124.t1 MTR_7g051440 28.463 527 325 18 32 546 35 521 3.61e-31 128
MS.gene055124.t1 MTR_4g132320 26.523 509 299 19 40 532 45 494 3.61e-31 127
MS.gene055124.t1 MTR_4g075690 27.494 451 276 18 40 486 44 447 7.87e-29 119
MS.gene055124.t1 MTR_2g088080 25.855 468 278 16 78 532 1 412 1.05e-26 113
MS.gene055124.t1 MTR_7g058670 48.148 81 40 2 83 161 13 93 4.79e-20 85.5
MS.gene055124.t1 MTR_6g055200 63.043 46 16 1 480 525 1 45 4.56e-13 64.3
MS.gene055124.t1 MTR_4g133150 32.847 137 78 4 150 283 44 169 2.57e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055124.t1 AT5G01050 54.145 567 242 7 12 572 14 568 0.0 624
MS.gene055124.t1 AT5G01040 52.660 564 253 5 12 572 14 566 0.0 617
MS.gene055124.t1 AT3G09220 54.265 551 235 9 11 555 11 550 0.0 605
MS.gene055124.t1 AT2G40370 43.686 586 305 9 2 572 5 580 0.0 524
MS.gene055124.t1 AT2G30210 45.951 568 277 11 18 572 20 570 0.0 522
MS.gene055124.t1 AT5G05390 45.503 567 289 9 12 572 13 565 2.38e-179 518
MS.gene055124.t1 AT2G29130 44.655 580 296 11 9 572 3 573 1.80e-175 508
MS.gene055124.t1 AT3G09220 54.644 463 193 9 99 555 2 453 8.02e-174 500
MS.gene055124.t1 AT5G07130 44.310 580 295 13 8 572 3 569 4.01e-173 502
MS.gene055124.t1 AT5G60020 44.123 587 303 11 1 572 1 577 2.85e-171 498
MS.gene055124.t1 AT5G60020 45.570 553 277 10 35 572 2 545 4.10e-170 494
MS.gene055124.t1 AT5G03260 46.390 554 276 12 22 572 22 557 6.88e-170 494
MS.gene055124.t1 AT2G38080 43.937 569 296 12 10 572 7 558 1.24e-167 488
MS.gene055124.t1 AT5G58910 44.954 545 287 8 30 572 34 567 1.20e-166 486
MS.gene055124.t1 AT5G58910 45.251 537 281 8 38 572 41 566 1.41e-166 486
MS.gene055124.t1 AT5G09360 43.056 576 305 10 3 572 11 569 7.77e-166 484
MS.gene055124.t1 AT1G18140 45.343 569 284 13 21 572 23 581 1.52e-165 483
MS.gene055124.t1 AT5G01190 44.599 574 296 8 1 572 5 558 4.40e-164 479
MS.gene055124.t1 AT5G58910 44.693 537 277 9 38 572 5 523 1.49e-161 471
MS.gene055124.t1 AT5G01190 45.369 529 272 7 46 572 31 544 1.21e-156 459
MS.gene055124.t1 AT2G46570 43.964 555 292 9 23 572 29 569 9.58e-156 458
MS.gene055124.t1 AT5G48100 44.567 543 278 12 29 562 25 553 6.91e-153 451
MS.gene055124.t1 AT5G60020 43.119 545 285 11 1 530 1 535 1.84e-150 444
MS.gene055124.t1 AT5G07130 44.467 497 251 12 88 572 1 484 4.14e-145 428
MS.gene055124.t1 AT5G07130 44.467 497 251 12 88 572 1 484 4.14e-145 428
MS.gene055124.t1 AT2G46570 43.636 495 260 9 83 572 4 484 7.08e-134 399
MS.gene055124.t1 AT4G39830 28.856 603 338 20 13 572 23 577 1.02e-64 222
MS.gene055124.t1 AT5G21105 30.288 591 339 20 10 563 20 574 1.08e-64 222
MS.gene055124.t1 AT5G21100 29.433 564 325 19 21 551 19 542 2.33e-63 218
MS.gene055124.t1 AT5G21105 29.910 555 319 19 10 530 20 538 2.49e-56 198
MS.gene055124.t1 AT4G39830 28.868 530 287 19 85 572 1 482 4.66e-49 177
MS.gene055124.t1 AT4G39830 28.872 523 282 19 92 572 6 480 1.74e-47 173
MS.gene055124.t1 AT4G39830 28.355 529 278 18 85 572 1 469 6.26e-46 169
MS.gene055124.t1 AT1G41830 28.814 531 319 19 16 537 16 496 2.87e-42 160
MS.gene055124.t1 AT1G76160 27.402 562 350 18 9 562 6 517 8.60e-42 158
MS.gene055124.t1 AT4G37160 27.422 547 348 15 29 572 34 534 5.44e-41 156
MS.gene055124.t1 AT5G66920 27.387 555 336 18 29 572 40 538 2.75e-40 154
MS.gene055124.t1 AT1G21850 28.125 544 307 19 37 562 40 517 1.14e-39 152
MS.gene055124.t1 AT5G51480 27.273 583 352 18 14 572 16 550 1.84e-39 152
MS.gene055124.t1 AT5G48450 27.379 515 322 18 40 546 43 513 5.09e-39 151
MS.gene055124.t1 AT1G21860 26.731 520 314 20 37 545 40 503 7.21e-39 150
MS.gene055124.t1 AT5G48450 27.379 515 322 18 40 546 43 513 9.58e-39 150
MS.gene055124.t1 AT2G23630 27.057 547 349 17 29 572 33 532 1.29e-38 149
MS.gene055124.t1 AT2G23630 27.057 547 349 17 29 572 38 537 1.95e-38 149
MS.gene055124.t1 AT4G12420 27.103 535 346 17 30 554 29 529 2.46e-37 146
MS.gene055124.t1 AT4G12420 27.103 535 346 17 30 554 29 529 2.46e-37 146
MS.gene055124.t1 AT1G75790 27.258 598 341 25 1 572 12 541 3.88e-37 145
MS.gene055124.t1 AT4G25240 27.461 579 361 18 11 572 14 550 1.92e-36 144
MS.gene055124.t1 AT4G25240 27.461 579 361 18 11 572 14 550 1.92e-36 144
MS.gene055124.t1 AT4G22010 26.571 557 341 17 29 572 29 530 2.18e-36 143
MS.gene055124.t1 AT5G21105 30.769 364 212 12 209 563 51 383 5.87e-34 133
MS.gene055124.t1 AT1G55570 27.606 518 308 18 44 545 47 513 1.91e-33 134
MS.gene055124.t1 AT4G37160 28.246 439 270 13 29 464 34 430 1.51e-32 130
MS.gene055124.t1 AT4G28090 25.595 504 309 18 47 537 49 499 1.60e-32 132
MS.gene055124.t1 AT3G13390 25.954 524 325 16 36 545 38 512 2.70e-31 128
MS.gene055124.t1 AT4G38420 25.502 498 324 16 44 536 48 503 1.37e-30 126
MS.gene055124.t1 AT3G13400 27.071 495 313 17 44 532 45 497 1.51e-28 120
MS.gene055124.t1 AT3G13400 27.071 495 313 17 44 532 45 497 1.51e-28 120
MS.gene055124.t1 AT1G55560 25.852 499 314 19 44 532 44 496 2.15e-27 116
MS.gene055124.t1 AT4G38420 25.105 478 311 16 44 516 48 483 9.74e-27 114
MS.gene055124.t1 AT4G38420 29.344 259 169 6 37 291 41 289 1.75e-24 107

Find 126 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTCAATATGAAGATTT+TGG 0.185047 7.4:-38971877 None:intergenic
TGCTTCACCTTGGTCGATTT+TGG 0.187919 7.4:+38969311 None:intergenic
CAAGTGATTGTTACAGTTAA+TGG 0.188106 7.4:-38971160 MS.gene055124:CDS
TACAGTTGAACGCACTTTCT+TGG 0.249775 7.4:-38971796 MS.gene055124:intron
ACAGCTTTCATAGTTGAAAA+TGG 0.257214 7.4:-38968868 MS.gene055124:CDS
CCTGTACATTTAGCATTTAC+AGG 0.258852 7.4:+38969530 None:intergenic
AGTGGGACAGGGACCCAATT+TGG 0.259460 7.4:+38969605 None:intergenic
CGATAAACTCAAGTATAATT+TGG 0.260597 7.4:-38969153 MS.gene055124:CDS
TACCAATCACCTAATATTAT+TGG 0.268631 7.4:+38970264 None:intergenic
GGACATTGTGTTATATATTC+AGG 0.298929 7.4:+38970453 None:intergenic
TTCACTATCAACGGCTTTCC+TGG 0.299902 7.4:-38970174 MS.gene055124:CDS
TTTGGTGTAAATGTAACATT+AGG 0.316704 7.4:+38969329 None:intergenic
CCAATGAATTGTTATATTGT+AGG 0.324915 7.4:+38971066 None:intergenic
TATTATTGGTACTTCCTTGT+AGG 0.326514 7.4:+38970278 None:intergenic
GACGATTATATCGGTGGTAT+AGG 0.340782 7.4:+38969889 None:intergenic
TTGCTGTGCCGGTGGGAGGA+TGG 0.341412 7.4:-38969106 MS.gene055124:CDS
CATTATCATTCAACCTCGTT+CGG 0.343561 7.4:-38970322 MS.gene055124:CDS
AAGGAAGTACCAATAATATT+AGG 0.349483 7.4:-38970273 MS.gene055124:CDS
CAAATTATACTTGAGTTTAT+CGG 0.350950 7.4:+38969154 None:intergenic
TATATAGCCAATTAACATTT+AGG 0.357318 7.4:+38968802 None:intergenic
CTGTAACAATCACTTGTTCA+TGG 0.365502 7.4:+38971167 None:intergenic
TGCTGTGCCGGTGGGAGGAT+GGG 0.368851 7.4:-38969105 MS.gene055124:CDS
CCATCCCTGACTTCCAGCTT+TGG 0.378346 7.4:+38971124 None:intergenic
ATGTGGATGATCATAATCTA+TGG 0.380123 7.4:-38968900 MS.gene055124:CDS
TCCTTGTAGGGCTTAGGAAA+TGG 0.399142 7.4:+38970291 None:intergenic
CAGGTCCAAAGCTGGAAGTC+AGG 0.405362 7.4:-38971129 MS.gene055124:CDS
ATTATTGGTACTTCCTTGTA+GGG 0.406166 7.4:+38970279 None:intergenic
CAATGAATTGTTATATTGTA+GGG 0.414174 7.4:+38971067 None:intergenic
CGAACGAGGTTGAATGATAA+TGG 0.418720 7.4:+38970323 None:intergenic
TCGCAACACGGTTGCTGTGC+CGG 0.420527 7.4:-38969117 MS.gene055124:CDS
CTGACTTCCAGCTTTGGACC+TGG 0.430307 7.4:+38971130 None:intergenic
GTTGTACGTGCAACAGTTCA+TGG 0.431433 7.4:-38970348 MS.gene055124:CDS
CACAACAAGAAGGAACATTA+TGG 0.433064 7.4:-38970389 MS.gene055124:CDS
CGAGTGCAGCGTTGACCATT+CGG 0.438662 7.4:+38969984 None:intergenic
TACCAATAATATTAGGTGAT+TGG 0.440913 7.4:-38970266 MS.gene055124:CDS
GCAACATAACTGGTCTTGTA+GGG 0.442902 7.4:-38969631 MS.gene055124:CDS
ACGATTATATCGGTGGTATA+GGG 0.445298 7.4:+38969890 None:intergenic
GGTACTTCCTTGTAGGGCTT+AGG 0.446960 7.4:+38970285 None:intergenic
AAGTATATCGGCACTTTGGC+CGG 0.451299 7.4:+38969859 None:intergenic
AGTCATCCCATGCATCTTCA+TGG 0.452974 7.4:-38969227 MS.gene055124:CDS
ATATTAGGTGATTGGTATGA+TGG 0.463238 7.4:-38970258 MS.gene055124:CDS
GCCATGTAGTATGAACCTTT+TGG 0.463483 7.4:+38969821 None:intergenic
ACATACCAGGATTGTCAGTT+CGG 0.465483 7.4:+38969069 None:intergenic
GCAACCGTGTTGCGAATTGA+AGG 0.469608 7.4:+38969125 None:intergenic
CCTGTAAATGCTAAATGTAC+AGG 0.471155 7.4:-38969530 MS.gene055124:CDS
TACTTGAGTTTATCGGTAGT+AGG 0.471637 7.4:+38969161 None:intergenic
GCTGCATCACCTTATGTTGT+TGG 0.473113 7.4:-38969800 MS.gene055124:CDS
CCAACACCTTCAACTTCACT+TGG 0.476302 7.4:-38968844 MS.gene055124:CDS
CCTACAATATAACAATTCAT+TGG 0.477224 7.4:-38971066 MS.gene055124:intron
GTTGACCATTCGGAACAAAT+AGG 0.478262 7.4:+38969994 None:intergenic
TGACTTCCAGCTTTGGACCT+GGG 0.483976 7.4:+38971131 None:intergenic
GTCTGCTGTGAAAAGTATAT+CGG 0.485158 7.4:+38969847 None:intergenic
CTGACCATGCACTATATAGC+TGG 0.487286 7.4:+38970481 None:intergenic
TGGAAAAGGATATTCCATAA+TGG 0.491498 7.4:-38969450 MS.gene055124:CDS
AGCAACATAACTGGTCTTGT+AGG 0.494287 7.4:-38969632 MS.gene055124:CDS
TTCGGTGTATGCGGCATCCA+TGG 0.503408 7.4:+38969913 None:intergenic
CATGTATATCACAATTAACA+TGG 0.511581 7.4:-38969567 MS.gene055124:CDS
ACTGGTTCACCAACAACATA+AGG 0.513560 7.4:+38969791 None:intergenic
TCATCCACTTCAAGTGGGAC+AGG 0.515815 7.4:+38969593 None:intergenic
TGTGGATGATCATAATCTAT+GGG 0.516377 7.4:-38968899 MS.gene055124:CDS
GATATAATCGTCATCGCAGC+CGG 0.517961 7.4:-38969878 MS.gene055124:CDS
GAACAATTGAAGAGATCGCC+AGG 0.518140 7.4:+38970156 None:intergenic
ATTATCATTCAACCTCGTTC+GGG 0.518373 7.4:-38970321 MS.gene055124:CDS
TTCACAGCAGACCAACCAAA+AGG 0.519262 7.4:-38969836 MS.gene055124:CDS
CATTTAGCATTTACAGGACA+AGG 0.523265 7.4:+38969536 None:intergenic
CAACACGGTTGCTGTGCCGG+TGG 0.525329 7.4:-38969114 MS.gene055124:CDS
CGTGCCGTCGTCTTCTACGA+GGG 0.526381 7.4:-38969743 MS.gene055124:CDS
TCCATTTCCTAAGCCCTACA+AGG 0.531828 7.4:-38970292 MS.gene055124:CDS
ACTTTACCCAGGTCCAAAGC+TGG 0.536979 7.4:-38971137 MS.gene055124:CDS
TTCATACCATGAAGATGCAT+GGG 0.538306 7.4:+38969221 None:intergenic
ATTCATACCATGAAGATGCA+TGG 0.538422 7.4:+38969220 None:intergenic
TGAAAAGTATATCGGCACTT+TGG 0.541927 7.4:+38969855 None:intergenic
TATATCGGTGGTATAGGGTT+CGG 0.546559 7.4:+38969895 None:intergenic
ACATATAGTACCTTTGATGC+CGG 0.551649 7.4:-38969699 MS.gene055124:CDS
CAAATACAATTCAACGGTGG+AGG 0.551874 7.4:-38969285 MS.gene055124:CDS
AGTGGTAATGCCGGCATCAA+AGG 0.554962 7.4:+38969689 None:intergenic
GTATTTGAATTGCTTCACCT+TGG 0.558071 7.4:+38969301 None:intergenic
TAACATTTAGGCAAATCAGC+AGG 0.558427 7.4:+38968814 None:intergenic
AGATTCCGAACTGACAATCC+TGG 0.559455 7.4:-38969074 MS.gene055124:intron
TTAGGCAAATCAGCAGGTGG+TGG 0.560545 7.4:+38968820 None:intergenic
CAAATTCACAGTGGTAGCCA+TGG 0.562677 7.4:-38969930 MS.gene055124:CDS
GGTCCCTGTCCCACTTGAAG+TGG 0.563821 7.4:-38969597 MS.gene055124:CDS
GAATTGTCGAAGAGTCCTAC+TGG 0.567261 7.4:+38969773 None:intergenic
AGGTCCAAAGCTGGAAGTCA+GGG 0.569821 7.4:-38971128 MS.gene055124:CDS
AACACGGTTGCTGTGCCGGT+GGG 0.573459 7.4:-38969113 MS.gene055124:CDS
GGCTGCGATGACGATTATAT+CGG 0.574707 7.4:+38969880 None:intergenic
AAAGACCTATTTGTTCCGAA+TGG 0.575759 7.4:-38969999 MS.gene055124:CDS
GCTAAATGTACAGGTCCACT+TGG 0.578008 7.4:-38969521 MS.gene055124:CDS
TCTGATGCTTTCACTATCAA+CGG 0.586303 7.4:-38970183 MS.gene055124:CDS
ACCAAAAGGTTCATACTACA+TGG 0.591334 7.4:-38969822 MS.gene055124:CDS
ATGTGTTCATCCACTTCAAG+TGG 0.592927 7.4:+38969587 None:intergenic
ACGGTTGCTGTGCCGGTGGG+AGG 0.595198 7.4:-38969110 MS.gene055124:CDS
CTATATAGTGCATGGTCAGA+CGG 0.595622 7.4:-38970477 MS.gene055124:CDS
TTTAATGTGACACAACAAGA+AGG 0.597981 7.4:-38970399 MS.gene055124:CDS
GAATCCTTCAATTCGCAACA+CGG 0.600436 7.4:-38969129 MS.gene055124:CDS
ATAGCAGCCCATCCTCCCAC+CGG 0.601570 7.4:+38969098 None:intergenic
TTTGGTGTTATGGCAAACAT+GGG 0.609087 7.4:-38971859 MS.gene055124:CDS
CATCCACTTCAAGTGGGACA+GGG 0.612302 7.4:+38969594 None:intergenic
GCAATTCAAATACAATTCAA+CGG 0.613563 7.4:-38969291 MS.gene055124:CDS
TTGTTATGAAGTGGTAATGC+CGG 0.614295 7.4:+38969680 None:intergenic
CCAAGTGAAGTTGAAGGTGT+TGG 0.618280 7.4:+38968844 None:intergenic
TATGTTGTTGGTGAACCAGT+AGG 0.621180 7.4:-38969788 MS.gene055124:CDS
ATGTATATCACAATTAACAT+GGG 0.622921 7.4:-38969566 MS.gene055124:CDS
AATGGAAATCGACCCGAACG+AGG 0.625609 7.4:+38970309 None:intergenic
ACAGTTAATGGACTTTACCC+AGG 0.628423 7.4:-38971148 MS.gene055124:CDS
TGTTCCAGCTATATAGTGCA+TGG 0.629241 7.4:-38970485 MS.gene055124:CDS
TCGTGCCGTCGTCTTCTACG+AGG 0.630285 7.4:-38969744 MS.gene055124:CDS
TGCGATGACGATTATATCGG+TGG 0.631020 7.4:+38969883 None:intergenic
CAACATAACTGGTCTTGTAG+GGG 0.631983 7.4:-38969630 MS.gene055124:CDS
ATTGGTGTATTGTTATGAAG+TGG 0.638592 7.4:+38969671 None:intergenic
TATAAGCTGAAAGTGAAGCA+AGG 0.638942 7.4:-38970022 MS.gene055124:CDS
TTGATAGTGAAAGCATCAGA+TGG 0.646028 7.4:+38970186 None:intergenic
TACCACTGTGAATTTGTGAT+CGG 0.646281 7.4:+38969937 None:intergenic
CCAAAGCTGGAAGTCAGGGA+TGG 0.647318 7.4:-38971124 MS.gene055124:CDS
GGTGGACCAAGTGAAGTTGA+AGG 0.647739 7.4:+38968838 None:intergenic
CATTTAGGCAAATCAGCAGG+TGG 0.649176 7.4:+38968817 None:intergenic
AACATAACTGGTCTTGTAGG+GGG 0.652841 7.4:-38969629 MS.gene055124:CDS
GGTATAGGGTTCGGTGTATG+CGG 0.655841 7.4:+38969904 None:intergenic
ATTTACACCAAAATCGACCA+AGG 0.656064 7.4:-38969318 MS.gene055124:CDS
TTGGTATGATGGAAATGTTG+AGG 0.683745 7.4:-38970247 MS.gene055124:CDS
GTGGATGATCATAATCTATG+GGG 0.686953 7.4:-38968898 MS.gene055124:CDS
AACAAGAAGGAACATTATGG+TGG 0.690252 7.4:-38970386 MS.gene055124:CDS
TGTGTTCATCCACTTCAAGT+GGG 0.704295 7.4:+38969588 None:intergenic
ATTCAAATACAATTCAACGG+TGG 0.707341 7.4:-38969288 MS.gene055124:CDS
GTAACCCTCGTAGAAGACGA+CGG 0.715302 7.4:+38969739 None:intergenic
TGCCGATCACAAATTCACAG+TGG 0.784044 7.4:-38969939 MS.gene055124:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTCTTGATTGTTTATTT+TGG - chr7.4:38971733-38971752 MS.gene055124:intron 15.0%
!!! ACATTATTTTTAACTTTCTT+TGG - chr7.4:38969783-38969802 MS.gene055124:CDS 15.0%
!!! GATAATCTTTTTAGAATAAT+CGG + chr7.4:38969203-38969222 None:intergenic 15.0%
!!! TCTAATTTTATCTTCATTTA+TGG - chr7.4:38968851-38968870 MS.gene055124:CDS 15.0%
!!! TTGTATGTAAATTTATTTTC+AGG + chr7.4:38970260-38970279 None:intergenic 15.0%
!! AAAAAAAAAATGCCTTCAAT+TGG + chr7.4:38969697-38969716 None:intergenic 20.0%
!! ATAAAATACTTATACATACC+AGG + chr7.4:38971627-38971646 None:intergenic 20.0%
!! ATGATTGCAATTAGTTATAT+TGG + chr7.4:38969009-38969028 None:intergenic 20.0%
!! ATGTATATCACAATTAACAT+GGG - chr7.4:38971114-38971133 MS.gene055124:CDS 20.0%
!! ATGTATCTATTCTAATACTT+GGG + chr7.4:38970005-38970024 None:intergenic 20.0%
!! ATTATCAAAAGTCTATAGAA+AGG - chr7.4:38969217-38969236 MS.gene055124:CDS 20.0%
!! CAAATTATACTTGAGTTTAT+CGG + chr7.4:38971529-38971548 None:intergenic 20.0%
!! CAATGAATTGTTATATTGTA+GGG + chr7.4:38969616-38969635 None:intergenic 20.0%
!! TGATTGCAATTAGTTATATT+GGG + chr7.4:38969008-38969027 None:intergenic 20.0%
!! TTACAACTTAATGAAATAGT+TGG + chr7.4:38970030-38970049 None:intergenic 20.0%
!! TTATAAATCTCACTTTCTTA+TGG + chr7.4:38969077-38969096 None:intergenic 20.0%
!!! AAAATCGTATGTTTCTATTT+CGG - chr7.4:38970549-38970568 MS.gene055124:intron 20.0%
!!! AAATTTTTTAGCAACATAAC+TGG - chr7.4:38971039-38971058 MS.gene055124:intron 20.0%
!!! CATTTTTTTTTTGCCAAATT+TGG - chr7.4:38969705-38969724 MS.gene055124:CDS 20.0%
!!! GACTAATTAAATTTGCTTTT+TGG + chr7.4:38969937-38969956 None:intergenic 20.0%
!!! GATTTCACTATATTTTCTTT+TGG - chr7.4:38969360-38969379 MS.gene055124:CDS 20.0%
!!! TGAATTTTTGAACTATGTAA+AGG - chr7.4:38970165-38970184 MS.gene055124:CDS 20.0%
!!! TTAGGATCCAAAAATATTTT+CGG + chr7.4:38971336-38971355 None:intergenic 20.0%
!!! TTATTTTTAACTTTCTTTGG+TGG - chr7.4:38969786-38969805 MS.gene055124:CDS 20.0%
! AAAAATAATGTCTCATCTCA+TGG + chr7.4:38969774-38969793 None:intergenic 25.0%
! AGACATCGTATTATATATAC+AGG + chr7.4:38969868-38969887 None:intergenic 25.0%
! CATGTATATCACAATTAACA+TGG - chr7.4:38971113-38971132 MS.gene055124:CDS 25.0%
! CATGTATCTATTCTAATACT+TGG + chr7.4:38970006-38970025 None:intergenic 25.0%
! CCAATGAATTGTTATATTGT+AGG + chr7.4:38969617-38969636 None:intergenic 25.0%
! CCTACAATATAACAATTCAT+TGG - chr7.4:38969614-38969633 MS.gene055124:CDS 25.0%
! CGATAAACTCAAGTATAATT+TGG - chr7.4:38971527-38971546 MS.gene055124:intron 25.0%
! CTAAAAAATTTGTGAGCTAT+TGG + chr7.4:38971030-38971049 None:intergenic 25.0%
! GACATCGTATTATATATACA+GGG + chr7.4:38969867-38969886 None:intergenic 25.0%
! GCAATTCAAATACAATTCAA+CGG - chr7.4:38971389-38971408 MS.gene055124:intron 25.0%
! GTAAAAATATGCTTCCATTA+TGG + chr7.4:38971247-38971266 None:intergenic 25.0%
! TACCAATAATATTAGGTGAT+TGG - chr7.4:38970414-38970433 MS.gene055124:CDS 25.0%
! TACCAATCACCTAATATTAT+TGG + chr7.4:38970419-38970438 None:intergenic 25.0%
! TTATATATGAGTTCTTTCTC+TGG + chr7.4:38970080-38970099 None:intergenic 25.0%
!! CTATGACATAAATTTTTGCA+AGG - chr7.4:38969046-38969065 MS.gene055124:intron 25.0%
!! TAGGATCCAAAAATATTTTC+GGG + chr7.4:38971335-38971354 None:intergenic 25.0%
!! TGGTATGAATTTTCATGTTT+TGG - chr7.4:38971473-38971492 MS.gene055124:intron 25.0%
!! TTTACGAAGTCGAAAAATTT+TGG + chr7.4:38971312-38971331 None:intergenic 25.0%
!! TTTGGTGTAAATGTAACATT+AGG + chr7.4:38971354-38971373 None:intergenic 25.0%
!!! AAGGAAGTACCAATAATATT+AGG - chr7.4:38970407-38970426 MS.gene055124:CDS 25.0%
!!! AATTTATTTTCAGGACGAAT+TGG + chr7.4:38970251-38970270 None:intergenic 25.0%
!!! TTGGCTTCTAATGTTTTTTT+TGG - chr7.4:38969397-38969416 MS.gene055124:CDS 25.0%
ACAGCTTTCATAGTTGAAAA+TGG - chr7.4:38971812-38971831 MS.gene055124:CDS 30.0%
ATATTAGGTGATTGGTATGA+TGG - chr7.4:38970422-38970441 MS.gene055124:CDS 30.0%
ATGTGGATGATCATAATCTA+TGG - chr7.4:38971780-38971799 MS.gene055124:intron 30.0%
ATTATTGGTACTTCCTTGTA+GGG + chr7.4:38970404-38970423 None:intergenic 30.0%
ATTCAAATACAATTCAACGG+TGG - chr7.4:38971392-38971411 MS.gene055124:intron 30.0%
ATTGAAATTGAATGAGTTGC+AGG - chr7.4:38969462-38969481 MS.gene055124:CDS 30.0%
ATTGGTGTATTGTTATGAAG+TGG + chr7.4:38971012-38971031 None:intergenic 30.0%
CAAGTGATTGTTACAGTTAA+TGG - chr7.4:38969520-38969539 MS.gene055124:CDS 30.0%
CGTATTATATATACAGGGTT+CGG + chr7.4:38969862-38969881 None:intergenic 30.0%
CTAATTGCAATCATTTCTCA+CGG - chr7.4:38969015-38969034 MS.gene055124:intron 30.0%
GGACATTGTGTTATATATTC+AGG + chr7.4:38970230-38970249 None:intergenic 30.0%
GTATTATATATACAGGGTTC+GGG + chr7.4:38969861-38969880 None:intergenic 30.0%
TATTATTGGTACTTCCTTGT+AGG + chr7.4:38970405-38970424 None:intergenic 30.0%
TGGAAAAGGATATTCCATAA+TGG - chr7.4:38971230-38971249 MS.gene055124:intron 30.0%
TGTGGATGATCATAATCTAT+GGG - chr7.4:38971781-38971800 MS.gene055124:intron 30.0%
TTTAATGTGACACAACAAGA+AGG - chr7.4:38970281-38970300 MS.gene055124:CDS 30.0%
! CATTAGAAGCCAATTTTACT+TGG + chr7.4:38969390-38969409 None:intergenic 30.0%
! CGTAAACCCGAAAATATTTT+TGG - chr7.4:38971326-38971345 MS.gene055124:intron 30.0%
! GACATAAATTTTTGCAAGGT+CGG - chr7.4:38969050-38969069 MS.gene055124:intron 30.0%
! TTCTCTTTATCTTTTTGCGA+AGG - chr7.4:38969264-38969283 MS.gene055124:CDS 30.0%
! TTTTGAACTATGTAAAGGCA+TGG - chr7.4:38970170-38970189 MS.gene055124:CDS 30.0%
!! AAAAATTTTGGAGGGTTATC+TGG + chr7.4:38971300-38971319 None:intergenic 30.0%
!! GCATATTTTTACAATGTGAG+TGG - chr7.4:38971255-38971274 MS.gene055124:intron 30.0%
!!! CTTGATTGTTTATTTTGGCA+GGG - chr7.4:38971738-38971757 MS.gene055124:intron 30.0%
!!! TCTTGATTGTTTATTTTGGC+AGG - chr7.4:38971737-38971756 MS.gene055124:intron 30.0%
!!! TTGATTGTTTATTTTGGCAG+GGG - chr7.4:38971739-38971758 MS.gene055124:intron 30.0%
AAAGACCTATTTGTTCCGAA+TGG - chr7.4:38970681-38970700 MS.gene055124:intron 35.0%
AAATGCCTTCAATTGGTGAA+AGG + chr7.4:38969690-38969709 None:intergenic 35.0%
AACAAGAAGGAACATTATGG+TGG - chr7.4:38970294-38970313 MS.gene055124:CDS 35.0%
ACATATAGTACCTTTGATGC+CGG - chr7.4:38970981-38971000 MS.gene055124:intron 35.0%
ACCAAAAGGTTCATACTACA+TGG - chr7.4:38970858-38970877 MS.gene055124:intron 35.0%
ACGATTATATCGGTGGTATA+GGG + chr7.4:38970793-38970812 None:intergenic 35.0%
ATCCAAAAAGAACTCGAAAC+AGG - chr7.4:38970461-38970480 MS.gene055124:CDS 35.0%
ATCGCTTGAGATGAATAAAC+GGG - chr7.4:38969819-38969838 MS.gene055124:CDS 35.0%
ATTATCATTCAACCTCGTTC+GGG - chr7.4:38970359-38970378 MS.gene055124:CDS 35.0%
ATTCATACCATGAAGATGCA+TGG + chr7.4:38971463-38971482 None:intergenic 35.0%
ATTTACACCAAAATCGACCA+AGG - chr7.4:38971362-38971381 MS.gene055124:intron 35.0%
CAATTGTGACGAACCAAATT+TGG + chr7.4:38969721-38969740 None:intergenic 35.0%
CACAACAAGAAGGAACATTA+TGG - chr7.4:38970291-38970310 MS.gene055124:CDS 35.0%
CATCGCTTGAGATGAATAAA+CGG - chr7.4:38969818-38969837 MS.gene055124:CDS 35.0%
CATTATCATTCAACCTCGTT+CGG - chr7.4:38970358-38970377 MS.gene055124:CDS 35.0%
CATTTAGCATTTACAGGACA+AGG + chr7.4:38971147-38971166 None:intergenic 35.0%
CCTGTAAATGCTAAATGTAC+AGG - chr7.4:38971150-38971169 MS.gene055124:CDS 35.0%
CCTGTACATTTAGCATTTAC+AGG + chr7.4:38971153-38971172 None:intergenic 35.0%
CTGTAACAATCACTTGTTCA+TGG + chr7.4:38969516-38969535 None:intergenic 35.0%
GTATTTGAATTGCTTCACCT+TGG + chr7.4:38971382-38971401 None:intergenic 35.0%
GTGGATGATCATAATCTATG+GGG - chr7.4:38971782-38971801 MS.gene055124:intron 35.0%
GTTATATTGGGTAAGCTAAG+TGG + chr7.4:38968996-38969015 None:intergenic 35.0%
TAACATTTAGGCAAATCAGC+AGG + chr7.4:38971869-38971888 None:intergenic 35.0%
TACCACTGTGAATTTGTGAT+CGG + chr7.4:38970746-38970765 None:intergenic 35.0%
TACTTGAGTTTATCGGTAGT+AGG + chr7.4:38971522-38971541 None:intergenic 35.0%
TATAAGCTGAAAGTGAAGCA+AGG - chr7.4:38970658-38970677 MS.gene055124:intron 35.0%
TATAGTGAAATCCACGTGTT+AGG + chr7.4:38969352-38969371 None:intergenic 35.0%
TCAAACCTTTCACCAATTGA+AGG - chr7.4:38969682-38969701 MS.gene055124:CDS 35.0%
TCTGATGCTTTCACTATCAA+CGG - chr7.4:38970497-38970516 MS.gene055124:intron 35.0%
TTCATACCATGAAGATGCAT+GGG + chr7.4:38971462-38971481 None:intergenic 35.0%
TTGATCTCTTGAGCATAACT+CGG + chr7.4:38969898-38969917 None:intergenic 35.0%
TTTGGACAGCCAAGTAAAAT+TGG - chr7.4:38969378-38969397 MS.gene055124:CDS 35.0%
! ACGAAGTCGAAAAATTTTGG+AGG + chr7.4:38971309-38971328 None:intergenic 35.0%
! ATACTTGGGTTTACTAGTCT+TGG + chr7.4:38969991-38970010 None:intergenic 35.0%
! ATGGAATATCCTTTTCCAAC+AGG + chr7.4:38971228-38971247 None:intergenic 35.0%
! ATGGTTTTTGCATTGTCATG+TGG - chr7.4:38971763-38971782 MS.gene055124:intron 35.0%
! CGAAGTCGAAAAATTTTGGA+GGG + chr7.4:38971308-38971327 None:intergenic 35.0%
! CTTTATCTTTTTGCGAAGGT+GGG - chr7.4:38969268-38969287 MS.gene055124:CDS 35.0%
! GATGCAAATTTTTGTCCAAG+TGG + chr7.4:38971177-38971196 None:intergenic 35.0%
! GTCTGCTGTGAAAAGTATAT+CGG + chr7.4:38970836-38970855 None:intergenic 35.0%
! GTTCTTTCTCTGGATTTTGA+TGG + chr7.4:38970070-38970089 None:intergenic 35.0%
! TCTTTATCTTTTTGCGAAGG+TGG - chr7.4:38969267-38969286 MS.gene055124:CDS 35.0%
! TGAAAAGTATATCGGCACTT+TGG + chr7.4:38970828-38970847 None:intergenic 35.0%
! TGTAGTATGAACCTTTTGGT+TGG + chr7.4:38970858-38970877 None:intergenic 35.0%
! TTGGTATGATGGAAATGTTG+AGG - chr7.4:38970433-38970452 MS.gene055124:CDS 35.0%
! TTGTTATGAAGTGGTAATGC+CGG + chr7.4:38971003-38971022 None:intergenic 35.0%
! TTTTTGCTTCCTGTTGGAAA+AGG - chr7.4:38971216-38971235 MS.gene055124:intron 35.0%
!! TTGATAGTGAAAGCATCAGA+TGG + chr7.4:38970497-38970516 None:intergenic 35.0%
!! TTTGGTGTTATGGCAAACAT+GGG - chr7.4:38968821-38968840 MS.gene055124:CDS 35.0%
!!! ATGTTTTGGCTCAAGATTTC+GGG - chr7.4:38971487-38971506 MS.gene055124:intron 35.0%
!!! CAACTTTTGATAGTGAGTTC+CGG + chr7.4:38969303-38969322 None:intergenic 35.0%
!!! CATGTTTTGGCTCAAGATTT+CGG - chr7.4:38971486-38971505 MS.gene055124:intron 35.0%
!!! TTTTGGTGTTATGGCAAACA+TGG - chr7.4:38968820-38968839 MS.gene055124:CDS 35.0%
AACCCTGATCATTTGCAACT+TGG + chr7.4:38969174-38969193 None:intergenic 40.0%
ACATACCAGGATTGTCAGTT+CGG + chr7.4:38971614-38971633 None:intergenic 40.0%
ATGTGTTCATCCACTTCAAG+TGG + chr7.4:38971096-38971115 None:intergenic 40.0%
CAAATACAATTCAACGGTGG+AGG - chr7.4:38971395-38971414 MS.gene055124:intron 40.0%
CGAACGAGGTTGAATGATAA+TGG + chr7.4:38970360-38970379 None:intergenic 40.0%
CGGAACTCACTATCAAAAGT+TGG - chr7.4:38969301-38969320 MS.gene055124:CDS 40.0%
CTATATAGTGCATGGTCAGA+CGG - chr7.4:38970203-38970222 MS.gene055124:CDS 40.0%
GAATCCTTCAATTCGCAACA+CGG - chr7.4:38971551-38971570 MS.gene055124:intron 40.0%
GACGATTATATCGGTGGTAT+AGG + chr7.4:38970794-38970813 None:intergenic 40.0%
GTCCAAGTTGCAAATGATCA+GGG - chr7.4:38969169-38969188 MS.gene055124:CDS 40.0%
GTTGACCATTCGGAACAAAT+AGG + chr7.4:38970689-38970708 None:intergenic 40.0%
TACAGTTGAACGCACTTTCT+TGG - chr7.4:38968884-38968903 MS.gene055124:CDS 40.0%
TATATCGGTGGTATAGGGTT+CGG + chr7.4:38970788-38970807 None:intergenic 40.0%
TGTCCAAGTTGCAAATGATC+AGG - chr7.4:38969168-38969187 MS.gene055124:CDS 40.0%
TGTGTTCATCCACTTCAAGT+GGG + chr7.4:38971095-38971114 None:intergenic 40.0%
TGTTCCAGCTATATAGTGCA+TGG - chr7.4:38970195-38970214 MS.gene055124:CDS 40.0%
! ACTGGTTCACCAACAACATA+AGG + chr7.4:38970892-38970911 None:intergenic 40.0%
! GCCATGTAGTATGAACCTTT+TGG + chr7.4:38970862-38970881 None:intergenic 40.0%
! TATGTTGTTGGTGAACCAGT+AGG - chr7.4:38970892-38970911 MS.gene055124:intron 40.0%
!! AACATAACTGGTCTTGTAGG+GGG - chr7.4:38971051-38971070 MS.gene055124:intron 40.0%
!! ACAGTTAATGGACTTTACCC+AGG - chr7.4:38969532-38969551 MS.gene055124:CDS 40.0%
!! AGCAACATAACTGGTCTTGT+AGG - chr7.4:38971048-38971067 MS.gene055124:intron 40.0%
!! CAACATAACTGGTCTTGTAG+GGG - chr7.4:38971050-38971069 MS.gene055124:intron 40.0%
!! CTTTCTCTGGATTTTGATGG+TGG + chr7.4:38970067-38970086 None:intergenic 40.0%
!! GCAACATAACTGGTCTTGTA+GGG - chr7.4:38971049-38971068 MS.gene055124:intron 40.0%
!!! GAGTCATTTTTGCTTCCTGT+TGG - chr7.4:38971210-38971229 MS.gene055124:intron 40.0%
!!! TGTTTATTTTGGCAGGGGTA+TGG - chr7.4:38971744-38971763 MS.gene055124:intron 40.0%
AAGTATATCGGCACTTTGGC+CGG + chr7.4:38970824-38970843 None:intergenic 45.0%
AGATTCCGAACTGACAATCC+TGG - chr7.4:38971606-38971625 MS.gene055124:intron 45.0%
AGTCATCCCATGCATCTTCA+TGG - chr7.4:38971453-38971472 MS.gene055124:intron 45.0%
CAAATTCACAGTGGTAGCCA+TGG - chr7.4:38970750-38970769 MS.gene055124:intron 45.0%
CATTTAGGCAAATCAGCAGG+TGG + chr7.4:38971866-38971885 None:intergenic 45.0%
CCAACACCTTCAACTTCACT+TGG - chr7.4:38971836-38971855 MS.gene055124:CDS 45.0%
CTGACCATGCACTATATAGC+TGG + chr7.4:38970202-38970221 None:intergenic 45.0%
GAACAATTGAAGAGATCGCC+AGG + chr7.4:38970527-38970546 None:intergenic 45.0%
GAATTGTCGAAGAGTCCTAC+TGG + chr7.4:38970910-38970929 None:intergenic 45.0%
GATATAATCGTCATCGCAGC+CGG - chr7.4:38970802-38970821 MS.gene055124:intron 45.0%
GCTAAATGTACAGGTCCACT+TGG - chr7.4:38971159-38971178 MS.gene055124:CDS 45.0%
GCTGCATCACCTTATGTTGT+TGG - chr7.4:38970880-38970899 MS.gene055124:intron 45.0%
GGCTGCGATGACGATTATAT+CGG + chr7.4:38970803-38970822 None:intergenic 45.0%
GTGAAATCCACGTGTTAGGT+CGG + chr7.4:38969348-38969367 None:intergenic 45.0%
GTTGTACGTGCAACAGTTCA+TGG - chr7.4:38970332-38970351 MS.gene055124:CDS 45.0%
TCCATTTCCTAAGCCCTACA+AGG - chr7.4:38970388-38970407 MS.gene055124:CDS 45.0%
TCCTTGTAGGGCTTAGGAAA+TGG + chr7.4:38970392-38970411 None:intergenic 45.0%
TCTTGTAGGGGGTCCAAATT+GGG - chr7.4:38971062-38971081 MS.gene055124:intron 45.0%
TGAAATCCACGTGTTAGGTC+GGG + chr7.4:38969347-38969366 None:intergenic 45.0%
TGCCGATCACAAATTCACAG+TGG - chr7.4:38970741-38970760 MS.gene055124:intron 45.0%
TGCGATGACGATTATATCGG+TGG + chr7.4:38970800-38970819 None:intergenic 45.0%
TTCACAGCAGACCAACCAAA+AGG - chr7.4:38970844-38970863 MS.gene055124:intron 45.0%
TTCACTATCAACGGCTTTCC+TGG - chr7.4:38970506-38970525 MS.gene055124:intron 45.0%
! ACAGGGTTCGGGTTTAAACT+CGG + chr7.4:38969850-38969869 None:intergenic 45.0%
! ATCTTTTTGCGAAGGTGGGT+TGG - chr7.4:38969272-38969291 MS.gene055124:CDS 45.0%
! CCAAGTGAAGTTGAAGGTGT+TGG + chr7.4:38971839-38971858 None:intergenic 45.0%
!! TCTTTTTGCGAAGGTGGGTT+GGG - chr7.4:38969273-38969292 MS.gene055124:CDS 45.0%
!! TGCTTCACCTTGGTCGATTT+TGG + chr7.4:38971372-38971391 None:intergenic 45.0%
!!! CGCCTGTTTCGAGTTCTTTT+TGG + chr7.4:38970466-38970485 None:intergenic 45.0%
AATGGAAATCGACCCGAACG+AGG + chr7.4:38970374-38970393 None:intergenic 50.0%
AATTTCCCCGACCTAACACG+TGG - chr7.4:38969338-38969357 MS.gene055124:CDS 50.0%
ACGTGTTAGGTCGGGGAAAT+TGG + chr7.4:38969339-38969358 None:intergenic 50.0%
ACTTTACCCAGGTCCAAAGC+TGG - chr7.4:38969543-38969562 MS.gene055124:CDS 50.0%
AGGTCCAAAGCTGGAAGTCA+GGG - chr7.4:38969552-38969571 MS.gene055124:CDS 50.0%
CATCCACTTCAAGTGGGACA+GGG + chr7.4:38971089-38971108 None:intergenic 50.0%
GAAATCCACGTGTTAGGTCG+GGG + chr7.4:38969346-38969365 None:intergenic 50.0%
GCAACCGTGTTGCGAATTGA+AGG + chr7.4:38971558-38971577 None:intergenic 50.0%
GGTACTTCCTTGTAGGGCTT+AGG + chr7.4:38970398-38970417 None:intergenic 50.0%
GGTGGACCAAGTGAAGTTGA+AGG + chr7.4:38971845-38971864 None:intergenic 50.0%
GTAACCCTCGTAGAAGACGA+CGG + chr7.4:38970944-38970963 None:intergenic 50.0%
GTCTTGTAGGGGGTCCAAAT+TGG - chr7.4:38971061-38971080 MS.gene055124:intron 50.0%
TCATCCACTTCAAGTGGGAC+AGG + chr7.4:38971090-38971109 None:intergenic 50.0%
TTAGGCAAATCAGCAGGTGG+TGG + chr7.4:38971863-38971882 None:intergenic 50.0%
! AGTGGTAATGCCGGCATCAA+AGG + chr7.4:38970994-38971013 None:intergenic 50.0%
! CAGGGTTCGGGTTTAAACTC+GGG + chr7.4:38969849-38969868 None:intergenic 50.0%
!! GGTATAGGGTTCGGTGTATG+CGG + chr7.4:38970779-38970798 None:intergenic 50.0%
!! TGACTTCCAGCTTTGGACCT+GGG + chr7.4:38969552-38969571 None:intergenic 50.0%
!!! CTTTTTGCGAAGGTGGGTTG+GGG - chr7.4:38969274-38969293 MS.gene055124:CDS 50.0%
AGTGGGACAGGGACCCAATT+TGG + chr7.4:38971078-38971097 None:intergenic 55.0%
CAGGTCCAAAGCTGGAAGTC+AGG - chr7.4:38969551-38969570 MS.gene055124:CDS 55.0%
CCAAAGCTGGAAGTCAGGGA+TGG - chr7.4:38969556-38969575 MS.gene055124:CDS 55.0%
CCATCCCTGACTTCCAGCTT+TGG + chr7.4:38969559-38969578 None:intergenic 55.0%
! TTCGGTGTATGCGGCATCCA+TGG + chr7.4:38970770-38970789 None:intergenic 55.0%
!! CGAGTGCAGCGTTGACCATT+CGG + chr7.4:38970699-38970718 None:intergenic 55.0%
!! CTGACTTCCAGCTTTGGACC+TGG + chr7.4:38969553-38969572 None:intergenic 55.0%
ATAGCAGCCCATCCTCCCAC+CGG + chr7.4:38971585-38971604 None:intergenic 60.0%
CGTGCCGTCGTCTTCTACGA+GGG - chr7.4:38970937-38970956 MS.gene055124:intron 60.0%
GGTCCCTGTCCCACTTGAAG+TGG - chr7.4:38971083-38971102 MS.gene055124:CDS 60.0%
TCGCAACACGGTTGCTGTGC+CGG - chr7.4:38971563-38971582 MS.gene055124:intron 60.0%
TCGTGCCGTCGTCTTCTACG+AGG - chr7.4:38970936-38970955 MS.gene055124:intron 60.0%
! AACACGGTTGCTGTGCCGGT+GGG - chr7.4:38971567-38971586 MS.gene055124:intron 60.0%
!! CGAAGGTGGGTTGGGGAAAC+CGG - chr7.4:38969281-38969300 MS.gene055124:CDS 60.0%
CAACACGGTTGCTGTGCCGG+TGG - chr7.4:38971566-38971585 MS.gene055124:intron 65.0%
! TGCTGTGCCGGTGGGAGGAT+GGG - chr7.4:38971575-38971594 MS.gene055124:intron 65.0%
! TTGCTGTGCCGGTGGGAGGA+TGG - chr7.4:38971574-38971593 MS.gene055124:intron 65.0%
! ACGGTTGCTGTGCCGGTGGG+AGG - chr7.4:38971570-38971589 MS.gene055124:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 38968813 38971889 38968813 ID=MS.gene055124
chr7.4 mRNA 38968813 38971889 38968813 ID=MS.gene055124.t1;Parent=MS.gene055124
chr7.4 exon 38971797 38971889 38971797 ID=MS.gene055124.t1.exon1;Parent=MS.gene055124.t1
chr7.4 CDS 38971797 38971889 38971797 ID=cds.MS.gene055124.t1;Parent=MS.gene055124.t1
chr7.4 exon 38971067 38971218 38971067 ID=MS.gene055124.t1.exon2;Parent=MS.gene055124.t1
chr7.4 CDS 38971067 38971218 38971067 ID=cds.MS.gene055124.t1;Parent=MS.gene055124.t1
chr7.4 exon 38970148 38970515 38970148 ID=MS.gene055124.t1.exon3;Parent=MS.gene055124.t1
chr7.4 CDS 38970148 38970515 38970148 ID=cds.MS.gene055124.t1;Parent=MS.gene055124.t1
chr7.4 exon 38969075 38970049 38969075 ID=MS.gene055124.t1.exon4;Parent=MS.gene055124.t1
chr7.4 CDS 38969075 38970049 38969075 ID=cds.MS.gene055124.t1;Parent=MS.gene055124.t1
chr7.4 exon 38968813 38968943 38968813 ID=MS.gene055124.t1.exon5;Parent=MS.gene055124.t1
chr7.4 CDS 38968813 38968943 38968813 ID=cds.MS.gene055124.t1;Parent=MS.gene055124.t1
Gene Sequence

>MS.gene055124

ATGAAGATTTTGGTGTTATGGCAAACATGGGCTTTTGCTCTAATTTTATCTTCATTTATGGCTTCTGCTGCTACAGTTGAACGCACTTTCTTGGTAAGATTTTAATGTGTTTTCTTAGTGTTGACTAGTCTTAGTTACATGACATTTTATTCAATCAATCTTTCACTTCAACTCAATTCTCCACTTAGCTTACCCAATATAACTAATTGCAATCATTTCTCACGGTGTATATACTATGACATAAATTTTTGCAAGGTCGGTCCATAAGAAAGTGAGATTTATAATAATATTATATCTCATGTAAAAAGTTAGTTTTTGAATATTGTAAAGTAAATCTCAATATAACAAAATGAATTGTCCAAGTTGCAAATGATCAGGGTTTAATCTCCGATTATTCTAAAAAGATTATCAAAAGTCTATAGAAAGGTTATTTTAAACTACTATATTTTTTTTCTCTTTATCTTTTTGCGAAGGTGGGTTGGGGAAACCGGAACTCACTATCAAAAGTTGGAGTGAATGAGTTCCAATTTCCCCGACCTAACACGTGGATTTCACTATATTTTCTTTTGGACAGCCAAGTAAAATTGGCTTCTAATGTTTTTTTTGGTACAATTTGTCTTTGAATTTTAGTATACTTTAATTTCATACTATTGAAATTGAATGAGTTGCAGGTTGAAAACAAGACTATTACACGATTGTGCCATGAACAAGTGATTGTTACAGTTAATGGACTTTACCCAGGTCCAAAGCTGGAAGTCAGGGATGGTGACTCTGTGATTGTTCATGTAATCAACAATTCACCCTACAATATAACAATTCATTGGTAAGCAATTTGAATAACATAATTTAATATGATATTGTTACATTTTTCAAACCTTTCACCAATTGAAGGCATTTTTTTTTTGCCAAATTTGGTTCGTCACAATTGAAAAATATGTCAAGTCTCTACATGTCTGATCCATGAGATGAGACATTATTTTTAACTTTCTTTGGTGGCTAAAAATACATCGCTTGAGATGAATAAACGGGAAATCCCGAGTTTAAACCCGAACCCTGTATATATAATACGATGTCTTTACTAACCGAGTTATGCTCAAGAGATCAACTTTATTTTTTATAAGCCAAAAAGCAAATTTAATTAGTCTTCGATACAAAAATTTAAGCACAAGATGTGACCAAGACTAGTAAACCCAAGTATTAGAATAGATACATGACCAACTATTTCATTAAGTTGTAAACAAAAACAGAACACCACCATCAAAATCCAGAGAAAGAACTCATATATAATCTTAGCTATATATAATTTCACTAGAATTTTGCTATATCTTAAAAAATTAATGTCTAATTGTTTATGAATTTTTGAACTATGTAAAGGCATGGAGTGTTCCAGCTATATAGTGCATGGTCAGACGGTCCTGAATATATAACACAATGTCCAATTCGTCCTGAAAATAAATTTACATACAAATTTAATGTGACACAACAAGAAGGAACATTATGGTGGCATGCTCATGCATCAGTTGTACGTGCAACAGTTCATGGTGCCATTATCATTCAACCTCGTTCGGGTCGATTTCCATTTCCTAAGCCCTACAAGGAAGTACCAATAATATTAGGTGATTGGTATGATGGAAATGTTGAGGAGATTATCCAAAAAGAACTCGAAACAGGCGATAAAATACCATCTGATGCTTTCACTATCAACGGCTTTCCTGGCGATCTCTTCAATTGTTCAAAAAATCGTATGTTTCTATTTCGGCATTCTCTAATTTAGTGTAAATTAGACTTGTATACTCTAATTCATGTGTTATGTGTATAAAATATGACTTATGTATTTCAGAGATGTATAAGCTGAAAGTGAAGCAAGGAAAGACCTATTTGTTCCGAATGGTCAACGCTGCACTCGCTAACAATCTTTTCTTCAAGATTGCCGATCACAAATTCACAGTGGTAGCCATGGATGCCGCATACACCGAACCCTATACCACCGATATAATCGTCATCGCAGCCGGCCAAAGTGCCGATATACTTTTCACAGCAGACCAACCAAAAGGTTCATACTACATGGCTGCATCACCTTATGTTGTTGGTGAACCAGTAGGACTCTTCGACAATTCGACAACTCGTGCCGTCGTCTTCTACGAGGGTTACAAAAAATTAAAAACAAAACATATAGTACCTTTGATGCCGGCATTACCACTTCATAACAATACACCAATAGCTCACAAATTTTTTAGCAACATAACTGGTCTTGTAGGGGGTCCAAATTGGGTCCCTGTCCCACTTGAAGTGGATGAACACATGTATATCACAATTAACATGGGTTTAGTACCTTGTCCTGTAAATGCTAAATGTACAGGTCCACTTGGACAAAAATTTGCATCTAGCATGAACAATGAGTCATTTTTGCTTCCTGTTGGAAAAGGATATTCCATAATGGAAGCATATTTTTACAATGTGAGTGGCATTTACACTACAGATTTTCCAGATAACCCTCCAAAATTTTTCGACTTCGTAAACCCGAAAATATTTTTGGATCCTAATGTTACATTTACACCAAAATCGACCAAGGTGAAGCAATTCAAATACAATTCAACGGTGGAGGTCGTGTTTCAAAATACAGCGATTTTGAATGCGCAAAGTCATCCCATGCATCTTCATGGTATGAATTTTCATGTTTTGGCTCAAGATTTCGGGATTTTCAATCCTACTACCGATAAACTCAAGTATAATTTGGTGAATCCTTCAATTCGCAACACGGTTGCTGTGCCGGTGGGAGGATGGGCTGCTATTAGATTCCGAACTGACAATCCTGGTATGTATAAGTATTTTATGTAACAACAGTTCACTTTTTTTTTTTTTTTAAAAAAATTTATTAGTTACATAAATTTAGATAAGAAAAGTTTAATAGCTTACTAAAAATTTCTTGATTGTTTATTTTGGCAGGGGTATGGTTTTTGCATTGTCATGTGGATGATCATAATCTATGGGGACTAGTCACAGCTTTCATAGTTGAAAATGGACCAACACCTTCAACTTCACTTGGTCCACCACCTGCTGATTTGCCTAAATGTTAA

Protein sequence

>MS.gene055124.t1

MKILVLWQTWAFALILSSFMASAATVERTFLVENKTITRLCHEQVIVTVNGLYPGPKLEVRDGDSVIVHVINNSPYNITIHWHGVFQLYSAWSDGPEYITQCPIRPENKFTYKFNVTQQEGTLWWHAHASVVRATVHGAIIIQPRSGRFPFPKPYKEVPIILGDWYDGNVEEIIQKELETGDKIPSDAFTINGFPGDLFNCSKNQMYKLKVKQGKTYLFRMVNAALANNLFFKIADHKFTVVAMDAAYTEPYTTDIIVIAAGQSADILFTADQPKGSYYMAASPYVVGEPVGLFDNSTTRAVVFYEGYKKLKTKHIVPLMPALPLHNNTPIAHKFFSNITGLVGGPNWVPVPLEVDEHMYITINMGLVPCPVNAKCTGPLGQKFASSMNNESFLLPVGKGYSIMEAYFYNVSGIYTTDFPDNPPKFFDFVNPKIFLDPNVTFTPKSTKVKQFKYNSTVEVVFQNTAILNAQSHPMHLHGMNFHVLAQDFGIFNPTTDKLKYNLVNPSIRNTVAVPVGGWAAIRFRTDNPGVWFLHCHVDDHNLWGLVTAFIVENGPTPSTSLGPPPADLPKC