Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066329.t1 | XP_013454044.1 | 95 | 303 | 15 | 0 | 1 | 303 | 1 | 303 | 3.50E-170 | 607.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066329.t1 | Q52532 | 25.6 | 297 | 189 | 9 | 17 | 298 | 2 | 281 | 5.2e-13 | 76.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066329.t1 | A0A072UQE1 | 95.0 | 303 | 15 | 0 | 1 | 303 | 1 | 303 | 2.5e-170 | 607.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene066329 | 0.817664 | 2.93E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene066329 | 0.808282 | 3.34E-50 | -1.69E-46 |
| MS.gene052178 | MS.gene066329 | 0.803973 | 2.70E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene066329 | 0.80062 | 1.32E-48 | -1.69E-46 |
| MS.gene053557 | MS.gene066329 | 0.802161 | 6.40E-49 | -1.69E-46 |
| MS.gene055277 | MS.gene066329 | 0.809065 | 2.28E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene066329 | 0.80737 | 5.23E-50 | -1.69E-46 |
| MS.gene056410 | MS.gene066329 | 0.800732 | 1.26E-48 | -1.69E-46 |
| MS.gene057448 | MS.gene066329 | 0.800865 | 1.18E-48 | -1.69E-46 |
| MS.gene057450 | MS.gene066329 | 0.805902 | 1.07E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene066329 | 0.805158 | 1.53E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene066329 | 0.806322 | 8.70E-50 | -1.69E-46 |
| MS.gene059294 | MS.gene066329 | 0.814946 | 1.19E-51 | -1.69E-46 |
| MS.gene059807 | MS.gene066329 | 0.8325 | 9.13E-56 | -1.69E-46 |
| MS.gene060986 | MS.gene066329 | 0.801787 | 7.63E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066329.t1 | MTR_5g064035 | 95.050 | 303 | 15 | 0 | 1 | 303 | 1 | 303 | 0.0 | 607 |
| MS.gene066329.t1 | MTR_2g008880 | 58.746 | 303 | 122 | 2 | 2 | 303 | 6 | 306 | 3.50e-133 | 381 |
| MS.gene066329.t1 | MTR_3g087050 | 58.389 | 298 | 122 | 1 | 2 | 299 | 4 | 299 | 5.46e-131 | 375 |
| MS.gene066329.t1 | MTR_8g090060 | 51.815 | 303 | 108 | 3 | 1 | 301 | 1 | 267 | 4.07e-113 | 328 |
| MS.gene066329.t1 | MTR_3g105290 | 39.175 | 291 | 170 | 5 | 12 | 298 | 13 | 300 | 1.25e-67 | 213 |
| MS.gene066329.t1 | MTR_5g020320 | 35.333 | 300 | 176 | 8 | 13 | 300 | 9 | 302 | 1.00e-56 | 185 |
| MS.gene066329.t1 | MTR_5g020260 | 31.741 | 293 | 183 | 4 | 18 | 298 | 15 | 302 | 6.95e-52 | 173 |
| MS.gene066329.t1 | MTR_3g105290 | 40.909 | 220 | 124 | 4 | 12 | 228 | 13 | 229 | 2.93e-49 | 164 |
| MS.gene066329.t1 | MTR_8g077290 | 31.699 | 306 | 175 | 6 | 22 | 303 | 19 | 314 | 1.27e-47 | 162 |
| MS.gene066329.t1 | MTR_5g020250 | 30.769 | 299 | 178 | 6 | 22 | 300 | 19 | 308 | 7.38e-46 | 157 |
| MS.gene066329.t1 | MTR_8g077290 | 31.559 | 263 | 150 | 5 | 22 | 264 | 19 | 271 | 4.75e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066329.t1 | AT5G09430 | 58.824 | 306 | 119 | 2 | 1 | 301 | 7 | 310 | 6.37e-134 | 382 |
| MS.gene066329.t1 | AT1G78210 | 57.237 | 304 | 127 | 2 | 1 | 301 | 1 | 304 | 2.65e-131 | 376 |
| MS.gene066329.t1 | AT4G39955 | 56.187 | 299 | 128 | 2 | 1 | 298 | 1 | 297 | 6.38e-130 | 373 |
| MS.gene066329.t1 | AT5G21950 | 41.724 | 290 | 159 | 5 | 16 | 299 | 17 | 302 | 1.25e-69 | 218 |
| MS.gene066329.t1 | AT5G21950 | 41.724 | 290 | 159 | 5 | 16 | 299 | 69 | 354 | 5.01e-69 | 219 |
| MS.gene066329.t1 | AT5G21950 | 41.339 | 254 | 139 | 5 | 16 | 263 | 17 | 266 | 1.69e-59 | 191 |
| MS.gene066329.t1 | AT1G17430 | 39.100 | 289 | 157 | 7 | 24 | 301 | 52 | 332 | 7.79e-58 | 189 |
| MS.gene066329.t1 | AT1G72620 | 39.502 | 281 | 161 | 7 | 24 | 299 | 56 | 332 | 2.27e-56 | 185 |
| MS.gene066329.t1 | AT4G33180 | 35.495 | 293 | 179 | 6 | 16 | 301 | 18 | 307 | 1.74e-55 | 182 |
| MS.gene066329.t1 | AT2G18360 | 32.550 | 298 | 180 | 4 | 22 | 303 | 19 | 311 | 5.02e-53 | 176 |
| MS.gene066329.t1 | AT4G36610 | 30.743 | 296 | 186 | 4 | 22 | 303 | 19 | 309 | 2.40e-47 | 161 |
| MS.gene066329.t1 | AT2G18360 | 32.046 | 259 | 155 | 4 | 22 | 264 | 19 | 272 | 1.82e-45 | 155 |
| MS.gene066329.t1 | AT5G21950 | 40.609 | 197 | 110 | 3 | 16 | 208 | 17 | 210 | 5.18e-43 | 147 |
| MS.gene066329.t1 | AT5G21950 | 40.609 | 197 | 110 | 3 | 16 | 208 | 17 | 210 | 5.18e-43 | 147 |
| MS.gene066329.t1 | AT5G21950 | 40.609 | 197 | 110 | 3 | 16 | 208 | 69 | 262 | 1.75e-42 | 147 |
| MS.gene066329.t1 | AT5G21950 | 40.609 | 197 | 110 | 3 | 16 | 208 | 69 | 262 | 1.75e-42 | 147 |
| MS.gene066329.t1 | AT4G33180 | 36.318 | 201 | 119 | 5 | 16 | 210 | 18 | 215 | 1.01e-33 | 123 |
Find 85 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAATTCTTCCGTTCTTT+CGG | 0.143721 | 5.4:-49750914 | None:intergenic |
| TGAAATTCTTCCGTTCTTTC+GGG | 0.171977 | 5.4:-49750913 | None:intergenic |
| GCCTCGGCGCCAATGCTTTA+TGG | 0.184523 | 5.4:+49750800 | MS.gene066329:CDS |
| GATTTGAATCACAGGCATTT+AGG | 0.187250 | 5.4:+49752591 | MS.gene066329:intron |
| TGCAGCCTACATTAATTATC+TGG | 0.212400 | 5.4:+49752440 | MS.gene066329:intron |
| GTTATTTCCTGTTTCTGATT+TGG | 0.256321 | 5.4:+49751113 | MS.gene066329:CDS |
| GGATGAAGCTGCTAATATTT+TGG | 0.259695 | 5.4:+49751134 | MS.gene066329:CDS |
| TTTCTTGACGTCCTTTCTAT+TGG | 0.301400 | 5.4:+49752689 | MS.gene066329:CDS |
| CGCCAATGCTTTATGGCAAT+GGG | 0.307277 | 5.4:+49750807 | MS.gene066329:CDS |
| TTGTGGATCAGGGGTGAGTT+TGG | 0.315958 | 5.4:+49751068 | MS.gene066329:CDS |
| TTCTGTCCTTTGCAATGGCT+TGG | 0.317817 | 5.4:-49752108 | None:intergenic |
| AAATGAACCTGAGATATCTT+AGG | 0.334634 | 5.4:-49752145 | None:intergenic |
| ATTTGAATCACAGGCATTTA+GGG | 0.337555 | 5.4:+49752592 | MS.gene066329:intron |
| TGGCGCCGAGGCCGTGGATT+AGG | 0.342440 | 5.4:-49750789 | None:intergenic |
| AAGGTTGTAATTTGTGGATC+AGG | 0.356794 | 5.4:+49751057 | MS.gene066329:CDS |
| CAAGTGTTCCCTTTGGAGCT+TGG | 0.363428 | 5.4:+49752475 | MS.gene066329:CDS |
| GGGTTTGTAGCGTATAGTTT+AGG | 0.371628 | 5.4:+49751009 | MS.gene066329:CDS |
| GTGAGGAATGTGAGTGTTGT+GGG | 0.383177 | 5.4:+49750973 | MS.gene066329:CDS |
| GTGGAGAAGGTTGTAATTTG+TGG | 0.401388 | 5.4:+49751051 | MS.gene066329:CDS |
| TTCGGCCACATCGTTTGGCT+TGG | 0.410504 | 5.4:+49751205 | MS.gene066329:CDS |
| TGTGAAGTATAAAGAGTTTG+TGG | 0.429449 | 5.4:+49751032 | MS.gene066329:CDS |
| ACGGAACAATAATGCATTGT+TGG | 0.437761 | 5.4:+49750728 | MS.gene066329:CDS |
| GTTTAACTGAAACAAGAAAC+TGG | 0.439521 | 5.4:+49750647 | MS.gene066329:CDS |
| TTGTGGGGTTGAGTTATGGT+GGG | 0.442930 | 5.4:+49750989 | MS.gene066329:CDS |
| AGTGTTGTGGGGTTGAGTTA+TGG | 0.443139 | 5.4:+49750985 | MS.gene066329:CDS |
| GCGCCAATGCTTTATGGCAA+TGG | 0.449507 | 5.4:+49750806 | MS.gene066329:CDS |
| CCGTGGATTAGGAGTAGGTT+TGG | 0.450435 | 5.4:-49750778 | None:intergenic |
| GTTGTGGGGTTGAGTTATGG+TGG | 0.450760 | 5.4:+49750988 | MS.gene066329:CDS |
| AAGCATTGGCGCCGAGGCCG+TGG | 0.453888 | 5.4:-49750795 | None:intergenic |
| GAAGAGAAGGATATTAGAGA+AGG | 0.455398 | 5.4:+49751090 | MS.gene066329:CDS |
| GCTTCATCCAAATCAGAAAC+AGG | 0.455482 | 5.4:-49751120 | None:intergenic |
| ACATGATCAAGTGTTCCCTT+TGG | 0.457850 | 5.4:+49752468 | MS.gene066329:CDS |
| CACAAACTCCACAAAAGCTT+AGG | 0.460472 | 5.4:+49751160 | MS.gene066329:CDS |
| AATGAACCTGAGATATCTTA+GGG | 0.467659 | 5.4:-49752144 | None:intergenic |
| GTATAAAGAGTTTGTGGAGA+AGG | 0.472110 | 5.4:+49751038 | MS.gene066329:CDS |
| GCAGCCTACATTAATTATCT+GGG | 0.481732 | 5.4:+49752441 | MS.gene066329:intron |
| TGACCTCCCTAAGATATCTC+AGG | 0.482755 | 5.4:+49752138 | MS.gene066329:CDS |
| AGGGGTGAGTTTGGAAGAGA+AGG | 0.483774 | 5.4:+49751077 | MS.gene066329:CDS |
| CGATCAACATTCACCGGTGC+AGG | 0.488016 | 5.4:+49750676 | MS.gene066329:CDS |
| AGGTTGTAATTTGTGGATCA+GGG | 0.499937 | 5.4:+49751058 | MS.gene066329:CDS |
| AACTTACATGAATGAAATCA+TGG | 0.500805 | 5.4:-49751245 | None:intergenic |
| GCTATGTGAATCCAATAGAA+AGG | 0.522083 | 5.4:-49752700 | None:intergenic |
| TGTGAGGAATGTGAGTGTTG+TGG | 0.522425 | 5.4:+49750972 | MS.gene066329:CDS |
| GTTGTGTTAGATTGCGGATG+AGG | 0.522581 | 5.4:-49750834 | None:intergenic |
| TCAAGCCGAGTGTGTGATGA+AGG | 0.524335 | 5.4:+49750933 | MS.gene066329:CDS |
| ACAAACTCCACAAAAGCTTA+GGG | 0.525227 | 5.4:+49751161 | MS.gene066329:CDS |
| AAGAGAAGGATATTAGAGAA+GGG | 0.525360 | 5.4:+49751091 | MS.gene066329:CDS |
| CATTACCTTCATCACACACT+CGG | 0.526290 | 5.4:-49750938 | None:intergenic |
| AATCTGTGGCCAAGCTCCAA+AGG | 0.534296 | 5.4:-49752484 | None:intergenic |
| AATTTGAGTAGGCAATGTGC+AGG | 0.538549 | 5.4:+49752056 | MS.gene066329:intron |
| AGGGGACAATGCTCAAATAG+TGG | 0.539089 | 5.4:+49752611 | MS.gene066329:CDS |
| TGCTACCGATCAACATTCAC+CGG | 0.540437 | 5.4:+49750670 | MS.gene066329:CDS |
| CGAGGCCGTGGATTAGGAGT+AGG | 0.543552 | 5.4:-49750783 | None:intergenic |
| ATCTGTGGCCAAGCTCCAAA+GGG | 0.545147 | 5.4:-49752483 | None:intergenic |
| CACGTCTCGACCCGAAAGAA+CGG | 0.550232 | 5.4:+49750903 | MS.gene066329:CDS |
| GCCATAAAGCATTGGCGCCG+AGG | 0.551141 | 5.4:-49750801 | None:intergenic |
| TGTGGAACGGAGACCTGCAC+CGG | 0.552081 | 5.4:-49750689 | None:intergenic |
| ATAGTGGTGATCAAGAATGC+AGG | 0.552457 | 5.4:+49752627 | MS.gene066329:CDS |
| ACCCCATTGCCATAAAGCAT+TGG | 0.556342 | 5.4:-49750809 | None:intergenic |
| TTAGGTCAGTTATTGTGGAA+CGG | 0.561360 | 5.4:-49750702 | None:intergenic |
| CCTCCAAAGAAAACAAGGTC+CGG | 0.562615 | 5.4:-49750874 | None:intergenic |
| AGCTTGGCCACAGATTGAAA+AGG | 0.584312 | 5.4:+49752491 | MS.gene066329:CDS |
| TCTCCCCAGATAATTAATGT+AGG | 0.604303 | 5.4:-49752445 | None:intergenic |
| ACTCTTCAATGTATACGTAC+CGG | 0.608199 | 5.4:+49750855 | MS.gene066329:CDS |
| ACAATAACTGACCTAAAAGA+CGG | 0.610006 | 5.4:+49750709 | MS.gene066329:CDS |
| CTGCACCGGTGAATGTTGAT+CGG | 0.616681 | 5.4:-49750675 | None:intergenic |
| TGAAGAGTTGTGTTAGATTG+CGG | 0.618679 | 5.4:-49750840 | None:intergenic |
| TGAGGAATGTGAGTGTTGTG+GGG | 0.629615 | 5.4:+49750974 | MS.gene066329:CDS |
| GGTTGTAATTTGTGGATCAG+GGG | 0.631089 | 5.4:+49751059 | MS.gene066329:CDS |
| TAGTGGTGATCAAGAATGCA+GGG | 0.631565 | 5.4:+49752628 | MS.gene066329:CDS |
| CTACTCCTAATCCACGGCCT+CGG | 0.636289 | 5.4:+49750784 | MS.gene066329:CDS |
| TTTGAATCACAGGCATTTAG+GGG | 0.641677 | 5.4:+49752593 | MS.gene066329:intron |
| AAATCATGGAGGAAGCAAGA+GGG | 0.642638 | 5.4:-49751231 | None:intergenic |
| GGCAACCAAGCCAAACGATG+TGG | 0.653313 | 5.4:-49751210 | None:intergenic |
| ATGACCCTCCAAAGAAAACA+AGG | 0.654054 | 5.4:-49750879 | None:intergenic |
| GAAATCATGGAGGAAGCAAG+AGG | 0.654459 | 5.4:-49751232 | None:intergenic |
| ATTGATCCAAGCCATTGCAA+AGG | 0.655390 | 5.4:+49752102 | MS.gene066329:CDS |
| CAGCCTACATTAATTATCTG+GGG | 0.659468 | 5.4:+49752442 | MS.gene066329:intron |
| CCAAACCTACTCCTAATCCA+CGG | 0.666360 | 5.4:+49750778 | MS.gene066329:CDS |
| TAATGGAAATGAAGTGTGTG+AGG | 0.683645 | 5.4:+49750956 | MS.gene066329:CDS |
| ATTTGAGTAGGCAATGTGCA+GGG | 0.685108 | 5.4:+49752057 | MS.gene066329:intron |
| CGAGTGTGTGATGAAGGTAA+TGG | 0.686165 | 5.4:+49750939 | MS.gene066329:CDS |
| GCCAATGCTTTATGGCAATG+GGG | 0.711559 | 5.4:+49750808 | MS.gene066329:CDS |
| GAACCTGAGATATCTTAGGG+AGG | 0.715923 | 5.4:-49752141 | None:intergenic |
| TTACATGAATGAAATCATGG+AGG | 0.744111 | 5.4:-49751242 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTTTAATAACTAAACTA+TGG | + | chr5.4:49751994-49752013 | MS.gene066329:intron | 15.0% |
| !! | CATTACAAAGTTATTACAAT+GGG | - | chr5.4:49752389-49752408 | None:intergenic | 20.0% |
| !! | TTAAAGTATATATAAAGCGT+AGG | + | chr5.4:49751334-49751353 | MS.gene066329:intron | 20.0% |
| !! | TTTGTAATGGTTAAATTAAG+AGG | + | chr5.4:49752400-49752419 | MS.gene066329:intron | 20.0% |
| !!! | AGTTTTACCTTGATATAATA+TGG | + | chr5.4:49751497-49751516 | MS.gene066329:intron | 20.0% |
| !!! | ATTTTGAATTTTGAACTCAT+TGG | + | chr5.4:49752569-49752588 | MS.gene066329:intron | 20.0% |
| !!! | CAGTTTTTAAAAGTAAAAAC+AGG | - | chr5.4:49751734-49751753 | None:intergenic | 20.0% |
| !!! | GTAATTTAATGTAAAAGTGT+CGG | + | chr5.4:49752276-49752295 | MS.gene066329:intron | 20.0% |
| !!! | GTTTTGTAAAATCATGTTTA+GGG | + | chr5.4:49751665-49751684 | MS.gene066329:intron | 20.0% |
| !!! | TATTAATGTTTTATGAAGCA+TGG | + | chr5.4:49752188-49752207 | MS.gene066329:intron | 20.0% |
| !!! | TGTTTTGTAAAATCATGTTT+AGG | + | chr5.4:49751664-49751683 | MS.gene066329:intron | 20.0% |
| !!! | TTTTTGGATATGCTTTTTTT+CGG | + | chr5.4:49751187-49751206 | MS.gene066329:CDS | 20.0% |
| ! | AACATTAATATCCAACTAAG+AGG | - | chr5.4:49752178-49752197 | None:intergenic | 25.0% |
| ! | AACTTACATGAATGAAATCA+TGG | - | chr5.4:49751248-49751267 | None:intergenic | 25.0% |
| ! | AATGAAAGCAACAAAAATGT+CGG | + | chr5.4:49751466-49751485 | MS.gene066329:intron | 25.0% |
| ! | CCATTACAAAGTTATTACAA+TGG | - | chr5.4:49752390-49752409 | None:intergenic | 25.0% |
| ! | CCATTGTAATAACTTTGTAA+TGG | + | chr5.4:49752387-49752406 | MS.gene066329:intron | 25.0% |
| ! | TAAAACTGATGAATTTGAGT+AGG | + | chr5.4:49752045-49752064 | MS.gene066329:intron | 25.0% |
| ! | TGTTCTACCATATTATATCA+AGG | - | chr5.4:49751507-49751526 | None:intergenic | 25.0% |
| ! | TTATTAGCAAACATGATCAT+TGG | + | chr5.4:49751625-49751644 | MS.gene066329:intron | 25.0% |
| !! | ATATTAACCTTTTCAATCTG+TGG | - | chr5.4:49752501-49752520 | None:intergenic | 25.0% |
| !! | CTATGGTATTGAAAATAAAG+AGG | + | chr5.4:49752011-49752030 | MS.gene066329:intron | 25.0% |
| !!! | ACTTTTAAAAACTGAGTCAA+AGG | + | chr5.4:49751740-49751759 | MS.gene066329:intron | 25.0% |
| !!! | CGATTTTTGAAAATTGTTAC+CGG | - | chr5.4:49752255-49752274 | None:intergenic | 25.0% |
| !!! | TTTAGTTCTTAAACTGAATC+TGG | + | chr5.4:49751840-49751859 | MS.gene066329:intron | 25.0% |
| !!! | TTTTTTCTATGTAGACAAAG+TGG | - | chr5.4:49751444-49751463 | None:intergenic | 25.0% |
| AAATGAACCTGAGATATCTT+AGG | - | chr5.4:49752148-49752167 | None:intergenic | 30.0% | |
| AAGAGAAGGATATTAGAGAA+GGG | + | chr5.4:49751091-49751110 | MS.gene066329:CDS | 30.0% | |
| AATGAACCTGAGATATCTTA+GGG | - | chr5.4:49752147-49752166 | None:intergenic | 30.0% | |
| ACAATAACTGACCTAAAAGA+CGG | + | chr5.4:49750709-49750728 | MS.gene066329:CDS | 30.0% | |
| ATTTCTACTTTCCTCTTAGT+TGG | + | chr5.4:49752164-49752183 | MS.gene066329:intron | 30.0% | |
| ATTTGAATCACAGGCATTTA+GGG | + | chr5.4:49752592-49752611 | MS.gene066329:intron | 30.0% | |
| GGTGTCTAATCAAACAATAT+CGG | - | chr5.4:49751373-49751392 | None:intergenic | 30.0% | |
| GTTTAACTGAAACAAGAAAC+TGG | + | chr5.4:49750647-49750666 | MS.gene066329:CDS | 30.0% | |
| TAAATCCTAAAGACAGAGTT+TGG | - | chr5.4:49751702-49751721 | None:intergenic | 30.0% | |
| TGTGAAGTATAAAGAGTTTG+TGG | + | chr5.4:49751032-49751051 | MS.gene066329:CDS | 30.0% | |
| TTACATGAATGAAATCATGG+AGG | - | chr5.4:49751245-49751264 | None:intergenic | 30.0% | |
| TTGAAATTCTTCCGTTCTTT+CGG | - | chr5.4:49750917-49750936 | None:intergenic | 30.0% | |
| !! | GTTATTTCCTGTTTCTGATT+TGG | + | chr5.4:49751113-49751132 | MS.gene066329:CDS | 30.0% |
| AAACATGCTTCTGGATACTA+TGG | - | chr5.4:49751934-49751953 | None:intergenic | 35.0% | |
| ACAAACTCCACAAAAGCTTA+GGG | + | chr5.4:49751161-49751180 | MS.gene066329:CDS | 35.0% | |
| ACGGAACAATAATGCATTGT+TGG | + | chr5.4:49750728-49750747 | MS.gene066329:CDS | 35.0% | |
| ACTCATTGGATTTGAATCAC+AGG | + | chr5.4:49752583-49752602 | MS.gene066329:intron | 35.0% | |
| ACTCTTCAATGTATACGTAC+CGG | + | chr5.4:49750855-49750874 | MS.gene066329:CDS | 35.0% | |
| CAGCCTACATTAATTATCTG+GGG | + | chr5.4:49752442-49752461 | MS.gene066329:intron | 35.0% | |
| CTTCACATTGAACTCGTATT+CGG | - | chr5.4:49752339-49752358 | None:intergenic | 35.0% | |
| GAAGAGAAGGATATTAGAGA+AGG | + | chr5.4:49751090-49751109 | MS.gene066329:CDS | 35.0% | |
| GATTTGAATCACAGGCATTT+AGG | + | chr5.4:49752591-49752610 | MS.gene066329:intron | 35.0% | |
| GCAGCCTACATTAATTATCT+GGG | + | chr5.4:49752441-49752460 | MS.gene066329:intron | 35.0% | |
| GCTATGTGAATCCAATAGAA+AGG | - | chr5.4:49752703-49752722 | None:intergenic | 35.0% | |
| GTATAAAGAGTTTGTGGAGA+AGG | + | chr5.4:49751038-49751057 | MS.gene066329:CDS | 35.0% | |
| TAATGGAAATGAAGTGTGTG+AGG | + | chr5.4:49750956-49750975 | MS.gene066329:CDS | 35.0% | |
| TCTCCCCAGATAATTAATGT+AGG | - | chr5.4:49752448-49752467 | None:intergenic | 35.0% | |
| TGAAATTCTTCCGTTCTTTC+GGG | - | chr5.4:49750916-49750935 | None:intergenic | 35.0% | |
| TGAAGAGTTGTGTTAGATTG+CGG | - | chr5.4:49750843-49750862 | None:intergenic | 35.0% | |
| TGCAGCCTACATTAATTATC+TGG | + | chr5.4:49752440-49752459 | MS.gene066329:intron | 35.0% | |
| TTAACCTACAAACATGCTTC+TGG | - | chr5.4:49751943-49751962 | None:intergenic | 35.0% | |
| TTAGGTCAGTTATTGTGGAA+CGG | - | chr5.4:49750705-49750724 | None:intergenic | 35.0% | |
| TTTCTTGACGTCCTTTCTAT+TGG | + | chr5.4:49752689-49752708 | MS.gene066329:CDS | 35.0% | |
| TTTGAATCACAGGCATTTAG+GGG | + | chr5.4:49752593-49752612 | MS.gene066329:intron | 35.0% | |
| ! | AAAAGTTCCCTAAGCTTTTG+TGG | - | chr5.4:49751171-49751190 | None:intergenic | 35.0% |
| ! | AAGGTTGTAATTTGTGGATC+AGG | + | chr5.4:49751057-49751076 | MS.gene066329:CDS | 35.0% |
| ! | AAGTTTTCTGTCCTTTGCAA+TGG | - | chr5.4:49752116-49752135 | None:intergenic | 35.0% |
| ! | AGGTTGTAATTTGTGGATCA+GGG | + | chr5.4:49751058-49751077 | MS.gene066329:CDS | 35.0% |
| ! | ATTTTGTGTGGAAAAGGCTA+AGG | + | chr5.4:49752656-49752675 | MS.gene066329:CDS | 35.0% |
| ! | CAAAAGCTTAGGGAACTTTT+TGG | + | chr5.4:49751171-49751190 | MS.gene066329:CDS | 35.0% |
| ! | GCATTATTGTTCCGTCTTTT+AGG | - | chr5.4:49750723-49750742 | None:intergenic | 35.0% |
| ! | GGATGAAGCTGCTAATATTT+TGG | + | chr5.4:49751134-49751153 | MS.gene066329:CDS | 35.0% |
| ! | TGTGAAGTGTCTGTTCTAAT+TGG | + | chr5.4:49752352-49752371 | MS.gene066329:intron | 35.0% |
| !! | GTCTTTTAGGTCAGTTATTG+TGG | - | chr5.4:49750710-49750729 | None:intergenic | 35.0% |
| !! | TCATCAGTTTTAGCACACTA+AGG | - | chr5.4:49752037-49752056 | None:intergenic | 35.0% |
| !!! | GAGTAGGTTTGGTTTTGATT+CGG | - | chr5.4:49750770-49750789 | None:intergenic | 35.0% |
| AAATCATGGAGGAAGCAAGA+GGG | - | chr5.4:49751234-49751253 | None:intergenic | 40.0% | |
| AATTTGAGTAGGCAATGTGC+AGG | + | chr5.4:49752056-49752075 | MS.gene066329:intron | 40.0% | |
| ACACCTTACACACAACTATG+AGG | - | chr5.4:49751419-49751438 | None:intergenic | 40.0% | |
| ACATGATCAAGTGTTCCCTT+TGG | + | chr5.4:49752468-49752487 | MS.gene066329:CDS | 40.0% | |
| ATAGTGGTGATCAAGAATGC+AGG | + | chr5.4:49752627-49752646 | MS.gene066329:CDS | 40.0% | |
| ATGACCCTCCAAAGAAAACA+AGG | - | chr5.4:49750882-49750901 | None:intergenic | 40.0% | |
| ATTGATCCAAGCCATTGCAA+AGG | + | chr5.4:49752102-49752121 | MS.gene066329:CDS | 40.0% | |
| ATTTGAGTAGGCAATGTGCA+GGG | + | chr5.4:49752057-49752076 | MS.gene066329:intron | 40.0% | |
| CACAAACTCCACAAAAGCTT+AGG | + | chr5.4:49751160-49751179 | MS.gene066329:CDS | 40.0% | |
| CATTACCTTCATCACACACT+CGG | - | chr5.4:49750941-49750960 | None:intergenic | 40.0% | |
| CCTTTACCCTTGTTCTAACT+CGG | + | chr5.4:49751391-49751410 | MS.gene066329:intron | 40.0% | |
| CGACACTGAGATATTGATAC+CGG | + | chr5.4:49752233-49752252 | MS.gene066329:intron | 40.0% | |
| CTAAAGACAGAGTTTGGAGA+AGG | - | chr5.4:49751696-49751715 | None:intergenic | 40.0% | |
| CTTCTCCAAACTCTGTCTTT+AGG | + | chr5.4:49751694-49751713 | MS.gene066329:intron | 40.0% | |
| GCTTCATCCAAATCAGAAAC+AGG | - | chr5.4:49751123-49751142 | None:intergenic | 40.0% | |
| GGGTTTGTAGCGTATAGTTT+AGG | + | chr5.4:49751009-49751028 | MS.gene066329:CDS | 40.0% | |
| GTACCTCATAGTTGTGTGTA+AGG | + | chr5.4:49751413-49751432 | MS.gene066329:intron | 40.0% | |
| GTGGAGAAGGTTGTAATTTG+TGG | + | chr5.4:49751051-49751070 | MS.gene066329:CDS | 40.0% | |
| TAGTGGTGATCAAGAATGCA+GGG | + | chr5.4:49752628-49752647 | MS.gene066329:CDS | 40.0% | |
| ! | CTAAGCTTTTGTGGAGTTTG+TGG | - | chr5.4:49751162-49751181 | None:intergenic | 40.0% |
| ! | GCATGCATTTTGTGTGGAAA+AGG | + | chr5.4:49752650-49752669 | MS.gene066329:CDS | 40.0% |
| ! | GGTTGTAATTTGTGGATCAG+GGG | + | chr5.4:49751059-49751078 | MS.gene066329:CDS | 40.0% |
| ! | GTATCCAGAAGCATGTTTGT+AGG | + | chr5.4:49751936-49751955 | MS.gene066329:intron | 40.0% |
| !!! | GGTTTGGTTTTGATTCGGTT+CGG | - | chr5.4:49750765-49750784 | None:intergenic | 40.0% |
| !!! | GTTTGGTTTTGATTCGGTTC+GGG | - | chr5.4:49750764-49750783 | None:intergenic | 40.0% |
| !!! | TTTGATTCGGTTCGGGTTTT+AGG | - | chr5.4:49750757-49750776 | None:intergenic | 40.0% |
| !!! | TTTTTTTCGGCCACATCGTT+TGG | + | chr5.4:49751200-49751219 | MS.gene066329:CDS | 40.0% |
| ACCCCATTGCCATAAAGCAT+TGG | - | chr5.4:49750812-49750831 | None:intergenic | 45.0% | |
| AGCTTGGCCACAGATTGAAA+AGG | + | chr5.4:49752491-49752510 | MS.gene066329:CDS | 45.0% | |
| AGGGGACAATGCTCAAATAG+TGG | + | chr5.4:49752611-49752630 | MS.gene066329:CDS | 45.0% | |
| AGTGTTGTGGGGTTGAGTTA+TGG | + | chr5.4:49750985-49751004 | MS.gene066329:CDS | 45.0% | |
| CAATATCTCAGTGTCGCATC+TGG | - | chr5.4:49752229-49752248 | None:intergenic | 45.0% | |
| CCAAACCTACTCCTAATCCA+CGG | + | chr5.4:49750778-49750797 | MS.gene066329:CDS | 45.0% | |
| CCGAGTTAGAACAAGGGTAA+AGG | - | chr5.4:49751394-49751413 | None:intergenic | 45.0% | |
| CCTCCAAAGAAAACAAGGTC+CGG | - | chr5.4:49750877-49750896 | None:intergenic | 45.0% | |
| CGAGTGTGTGATGAAGGTAA+TGG | + | chr5.4:49750939-49750958 | MS.gene066329:CDS | 45.0% | |
| CGCCAATGCTTTATGGCAAT+GGG | + | chr5.4:49750807-49750826 | MS.gene066329:CDS | 45.0% | |
| GAAATCATGGAGGAAGCAAG+AGG | - | chr5.4:49751235-49751254 | None:intergenic | 45.0% | |
| GAACCTGAGATATCTTAGGG+AGG | - | chr5.4:49752144-49752163 | None:intergenic | 45.0% | |
| GCCAATGCTTTATGGCAATG+GGG | + | chr5.4:49750808-49750827 | MS.gene066329:CDS | 45.0% | |
| GTTGTGTTAGATTGCGGATG+AGG | - | chr5.4:49750837-49750856 | None:intergenic | 45.0% | |
| TGACCTCCCTAAGATATCTC+AGG | + | chr5.4:49752138-49752157 | MS.gene066329:CDS | 45.0% | |
| TGCTACCGATCAACATTCAC+CGG | + | chr5.4:49750670-49750689 | MS.gene066329:CDS | 45.0% | |
| TTCTGTCCTTTGCAATGGCT+TGG | - | chr5.4:49752111-49752130 | None:intergenic | 45.0% | |
| TTGTGGGGTTGAGTTATGGT+GGG | + | chr5.4:49750989-49751008 | MS.gene066329:CDS | 45.0% | |
| ! | GTGAGGAATGTGAGTGTTGT+GGG | + | chr5.4:49750973-49750992 | MS.gene066329:CDS | 45.0% |
| ! | TGAGGAATGTGAGTGTTGTG+GGG | + | chr5.4:49750974-49750993 | MS.gene066329:CDS | 45.0% |
| ! | TGTGAGGAATGTGAGTGTTG+TGG | + | chr5.4:49750972-49750991 | MS.gene066329:CDS | 45.0% |
| !! | GAGGTACCGAGTTAGAACAA+GGG | - | chr5.4:49751400-49751419 | None:intergenic | 45.0% |
| !! | TGAGGTACCGAGTTAGAACA+AGG | - | chr5.4:49751401-49751420 | None:intergenic | 45.0% |
| !!! | CGGACCTTGTTTTCTTTGGA+GGG | + | chr5.4:49750875-49750894 | MS.gene066329:CDS | 45.0% |
| !!! | GTACCGGACCTTGTTTTCTT+TGG | + | chr5.4:49750871-49750890 | MS.gene066329:CDS | 45.0% |
| AATCTGTGGCCAAGCTCCAA+AGG | - | chr5.4:49752487-49752506 | None:intergenic | 50.0% | |
| AGGGGTGAGTTTGGAAGAGA+AGG | + | chr5.4:49751077-49751096 | MS.gene066329:CDS | 50.0% | |
| ATCTGTGGCCAAGCTCCAAA+GGG | - | chr5.4:49752486-49752505 | None:intergenic | 50.0% | |
| GCGCCAATGCTTTATGGCAA+TGG | + | chr5.4:49750806-49750825 | MS.gene066329:CDS | 50.0% | |
| GTTGTGGGGTTGAGTTATGG+TGG | + | chr5.4:49750988-49751007 | MS.gene066329:CDS | 50.0% | |
| TCAAGCCGAGTGTGTGATGA+AGG | + | chr5.4:49750933-49750952 | MS.gene066329:CDS | 50.0% | |
| TTGTGGATCAGGGGTGAGTT+TGG | + | chr5.4:49751068-49751087 | MS.gene066329:CDS | 50.0% | |
| ! | CTGCACCGGTGAATGTTGAT+CGG | - | chr5.4:49750678-49750697 | None:intergenic | 50.0% |
| ! | TGCAGGGCATGCATTTTGTG+TGG | + | chr5.4:49752644-49752663 | MS.gene066329:CDS | 50.0% |
| !! | CAAGTGTTCCCTTTGGAGCT+TGG | + | chr5.4:49752475-49752494 | MS.gene066329:CDS | 50.0% |
| !! | CCGTGGATTAGGAGTAGGTT+TGG | - | chr5.4:49750781-49750800 | None:intergenic | 50.0% |
| !!! | CCGGACCTTGTTTTCTTTGG+AGG | + | chr5.4:49750874-49750893 | MS.gene066329:CDS | 50.0% |
| CACGTCTCGACCCGAAAGAA+CGG | + | chr5.4:49750903-49750922 | MS.gene066329:CDS | 55.0% | |
| CGATCAACATTCACCGGTGC+AGG | + | chr5.4:49750676-49750695 | MS.gene066329:CDS | 55.0% | |
| CTACTCCTAATCCACGGCCT+CGG | + | chr5.4:49750784-49750803 | MS.gene066329:CDS | 55.0% | |
| GGCAACCAAGCCAAACGATG+TGG | - | chr5.4:49751213-49751232 | None:intergenic | 55.0% | |
| TTCGGCCACATCGTTTGGCT+TGG | + | chr5.4:49751205-49751224 | MS.gene066329:CDS | 55.0% | |
| GCCTCGGCGCCAATGCTTTA+TGG | + | chr5.4:49750800-49750819 | MS.gene066329:CDS | 60.0% | |
| TGTGGAACGGAGACCTGCAC+CGG | - | chr5.4:49750692-49750711 | None:intergenic | 60.0% | |
| !! | CGAGGCCGTGGATTAGGAGT+AGG | - | chr5.4:49750786-49750805 | None:intergenic | 60.0% |
| !! | GCCATAAAGCATTGGCGCCG+AGG | - | chr5.4:49750804-49750823 | None:intergenic | 60.0% |
| ! | TGGCGCCGAGGCCGTGGATT+AGG | - | chr5.4:49750792-49750811 | None:intergenic | 70.0% |
| !! | AAGCATTGGCGCCGAGGCCG+TGG | - | chr5.4:49750798-49750817 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 49750631 | 49752725 | 49750631 | ID=MS.gene066329 |
| chr5.4 | mRNA | 49750631 | 49752725 | 49750631 | ID=MS.gene066329.t1;Parent=MS.gene066329 |
| chr5.4 | exon | 49750631 | 49751260 | 49750631 | ID=MS.gene066329.t1.exon1;Parent=MS.gene066329.t1 |
| chr5.4 | CDS | 49750631 | 49751260 | 49750631 | ID=cds.MS.gene066329.t1;Parent=MS.gene066329.t1 |
| chr5.4 | exon | 49752067 | 49752159 | 49752067 | ID=MS.gene066329.t1.exon2;Parent=MS.gene066329.t1 |
| chr5.4 | CDS | 49752067 | 49752159 | 49752067 | ID=cds.MS.gene066329.t1;Parent=MS.gene066329.t1 |
| chr5.4 | exon | 49752445 | 49752512 | 49752445 | ID=MS.gene066329.t1.exon3;Parent=MS.gene066329.t1 |
| chr5.4 | CDS | 49752445 | 49752512 | 49752445 | ID=cds.MS.gene066329.t1;Parent=MS.gene066329.t1 |
| chr5.4 | exon | 49752605 | 49752725 | 49752605 | ID=MS.gene066329.t1.exon4;Parent=MS.gene066329.t1 |
| chr5.4 | CDS | 49752605 | 49752725 | 49752605 | ID=cds.MS.gene066329.t1;Parent=MS.gene066329.t1 |
| Gene Sequence |
| Protein sequence |
