AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060986


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060986.t1 MTR_2g072530 90.200 449 44 0 1 449 1 449 0.0 832
MS.gene060986.t1 MTR_2g072550 52.256 266 55 6 184 449 31 224 5.05e-71 224
MS.gene060986.t1 MTR_7g094030 34.735 452 262 13 12 446 27 462 3.20e-67 222
MS.gene060986.t1 MTR_2g082880 35.507 414 242 11 7 411 4 401 2.02e-65 216
MS.gene060986.t1 MTR_2g082800 37.280 397 235 10 3 398 17 400 4.07e-61 204
MS.gene060986.t1 MTR_2g072720 33.261 463 278 14 2 446 28 477 2.73e-59 202
MS.gene060986.t1 MTR_2g072730 34.014 441 269 14 10 436 13 445 3.77e-57 196
MS.gene060986.t1 MTR_1g115250 32.420 438 263 11 2 431 21 433 8.33e-57 194
MS.gene060986.t1 MTR_2g082850 36.695 357 195 11 12 350 21 364 8.58e-54 184
MS.gene060986.t1 MTR_4g032845 31.415 417 260 12 12 412 2 408 3.67e-51 179
MS.gene060986.t1 MTR_2g082780 40.553 217 124 5 1 216 1 213 4.48e-40 143
MS.gene060986.t1 MTR_1g025870 33.086 405 236 16 44 430 116 503 5.83e-40 150
MS.gene060986.t1 MTR_6g022350 27.682 466 259 16 11 409 4 458 1.14e-35 138
MS.gene060986.t1 MTR_2g067210 32.540 378 209 18 4 353 43 402 7.43e-32 127
MS.gene060986.t1 MTR_5g005700 27.426 474 295 14 11 446 30 492 7.23e-30 121
MS.gene060986.t1 MTR_5g005690 24.153 472 303 10 18 444 26 487 1.98e-28 117
MS.gene060986.t1 MTR_1g115245 31.955 266 159 7 5 261 18 270 7.94e-28 112
MS.gene060986.t1 MTR_5g007090 28.025 471 253 19 10 434 26 456 2.62e-27 114
MS.gene060986.t1 MTR_4g080590 26.941 438 302 12 5 434 15 442 5.76e-27 113
MS.gene060986.t1 MTR_4g080787 26.105 475 279 16 13 445 19 463 2.99e-25 108
MS.gene060986.t1 MTR_8g006910 28.710 411 243 16 11 400 50 431 1.62e-23 103
MS.gene060986.t1 MTR_4g080773 25.333 450 251 15 13 411 19 434 1.73e-22 100
MS.gene060986.t1 MTR_4g080773 25.333 450 251 15 13 411 19 434 1.85e-22 100
MS.gene060986.t1 MTR_7g023310 24.038 416 289 12 11 411 24 427 2.75e-22 99.4
MS.gene060986.t1 MTR_3g048290 24.891 458 303 15 13 445 23 464 1.62e-21 97.4
MS.gene060986.t1 MTR_5g007130 24.733 469 249 14 8 446 10 404 3.19e-21 95.5
MS.gene060986.t1 MTR_5g063450 29.893 281 158 9 12 283 26 276 1.60e-20 93.2
MS.gene060986.t1 MTR_5g084070 23.476 443 296 11 13 443 13 424 8.79e-20 91.7
MS.gene060986.t1 MTR_4g081030 27.635 351 188 14 9 331 12 324 3.81e-19 89.4
MS.gene060986.t1 MTR_0049s0110 25.541 462 263 20 13 445 8 417 3.70e-18 86.7
MS.gene060986.t1 MTR_5g039950 24.161 447 277 15 12 445 22 419 6.93e-18 85.9
MS.gene060986.t1 MTR_4g080590 26.613 372 255 12 5 369 15 375 5.06e-17 82.8
MS.gene060986.t1 MTR_8g467800 23.555 467 289 17 13 445 20 452 2.77e-16 81.3
MS.gene060986.t1 MTR_3g107160 23.778 450 247 14 12 443 9 380 4.20e-16 80.1
MS.gene060986.t1 MTR_1g013560 25.229 436 248 17 10 411 16 407 8.03e-16 79.7
MS.gene060986.t1 MTR_2g007450 22.410 473 274 18 7 447 10 421 8.34e-16 79.7
MS.gene060986.t1 MTR_8g062080 24.895 474 275 17 7 445 17 444 1.36e-15 79.0
MS.gene060986.t1 MTR_3g018680 30.357 224 131 8 11 221 20 231 2.33e-15 78.2
MS.gene060986.t1 MTR_2g082860 47.436 78 40 1 3 80 17 93 5.12e-15 71.6
MS.gene060986.t1 MTR_8g468810 24.086 465 296 19 12 445 24 462 5.79e-15 77.0
MS.gene060986.t1 MTR_2g072710 27.273 187 118 5 266 447 22 195 1.25e-14 72.8
MS.gene060986.t1 MTR_8g062310 22.545 448 301 14 7 445 17 427 1.33e-14 75.9
MS.gene060986.t1 MTR_2g007400 23.810 462 248 19 13 443 12 400 3.30e-14 74.7
MS.gene060986.t1 MTR_0049s0110 26.608 342 193 14 13 342 8 303 4.40e-14 73.6
MS.gene060986.t1 MTR_3g105060 35.915 142 78 5 13 148 14 148 4.62e-14 73.9
MS.gene060986.t1 MTR_1g013560 26.829 328 186 13 10 321 16 305 6.33e-14 73.2
MS.gene060986.t1 MTR_0049s0110 26.608 342 193 14 13 342 8 303 6.68e-14 73.2
MS.gene060986.t1 MTR_7g094050 38.793 116 69 2 313 426 2 117 1.56e-13 67.8
MS.gene060986.t1 MTR_0049s0110 29.630 243 139 12 13 231 8 242 5.76e-13 69.3
MS.gene060986.t1 MTR_7g115270 22.833 473 252 19 6 443 5 399 1.39e-12 69.3
MS.gene060986.t1 MTR_2g047858 26.901 171 120 3 13 178 115 285 2.40e-12 69.3
MS.gene060986.t1 MTR_2g048140 26.772 127 89 1 13 135 7 133 3.45e-12 68.6
MS.gene060986.t1 MTR_1g021825 23.718 468 276 21 8 447 12 426 8.40e-12 67.4
MS.gene060986.t1 MTR_1g016340 24.268 478 284 20 5 449 7 439 9.93e-12 67.0
MS.gene060986.t1 MTR_2g005990 35.833 120 66 2 13 124 6 122 1.10e-11 66.6
MS.gene060986.t1 MTR_1g016340 24.268 478 284 20 5 449 12 444 1.11e-11 67.0
MS.gene060986.t1 MTR_1g021825 23.667 469 277 21 7 447 82 497 1.23e-11 67.0
MS.gene060986.t1 MTR_1g016310 27.803 223 132 8 5 200 12 232 1.47e-11 65.9
MS.gene060986.t1 MTR_1g016310 27.803 223 132 8 5 200 12 232 2.50e-11 65.9
MS.gene060986.t1 MTR_5g083890 31.410 156 85 4 12 148 5 157 5.34e-11 65.1
MS.gene060986.t1 MTR_7g032380 28.409 176 107 6 6 171 4 170 5.37e-11 64.3
MS.gene060986.t1 MTR_3g099830 37.000 100 62 1 1 100 1 99 8.85e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060986.t1 AT3G14710 28.764 445 276 11 13 445 26 441 2.84e-40 150
MS.gene060986.t1 AT4G26340 26.000 450 283 14 13 445 2 418 3.32e-22 99.0
MS.gene060986.t1 AT4G10400 25.250 400 259 10 13 403 2 370 9.38e-22 97.4
MS.gene060986.t1 AT4G10400 25.250 400 259 10 13 403 2 370 9.38e-22 97.4
MS.gene060986.t1 AT4G10400 25.250 400 259 10 13 403 2 370 9.38e-22 97.4
MS.gene060986.t1 AT3G59200 25.949 474 293 15 12 444 6 462 6.90e-21 95.5
MS.gene060986.t1 AT3G59200 27.957 372 224 10 12 353 6 363 1.45e-20 93.2
MS.gene060986.t1 AT4G14096 29.167 360 222 13 10 353 5 347 3.06e-20 93.2
MS.gene060986.t1 AT4G14096 29.167 360 222 13 10 353 5 347 3.06e-20 93.2
MS.gene060986.t1 AT3G03030 25.227 440 274 17 13 411 2 427 1.37e-19 91.3
MS.gene060986.t1 AT5G22730 25.109 458 299 16 10 443 26 463 4.48e-19 89.7
MS.gene060986.t1 AT5G22730 25.109 458 299 16 10 443 26 463 4.48e-19 89.7
MS.gene060986.t1 AT3G03030 26.899 316 199 12 13 303 2 310 2.41e-18 86.3
MS.gene060986.t1 AT3G42770 26.940 464 258 23 18 444 4 423 2.52e-18 87.8
MS.gene060986.t1 AT4G14103 27.397 365 227 13 10 352 5 353 2.72e-18 86.7
MS.gene060986.t1 AT4G14103 27.397 365 227 13 10 352 5 353 2.72e-18 86.7
MS.gene060986.t1 AT2G42730 25.361 485 283 19 12 450 4 455 4.23e-18 86.7
MS.gene060986.t1 AT4G14103 27.397 365 227 13 10 352 5 353 5.68e-18 86.3
MS.gene060986.t1 AT3G60040 27.045 440 264 16 1 404 1 419 6.75e-18 86.7
MS.gene060986.t1 AT3G60040 27.045 440 264 16 1 404 220 638 9.27e-18 86.3
MS.gene060986.t1 AT3G60040 27.045 440 264 16 1 404 218 636 9.93e-18 86.3
MS.gene060986.t1 AT5G38590 23.678 435 290 11 13 435 2 406 1.06e-17 85.1
MS.gene060986.t1 AT3G60040 27.045 440 264 16 1 404 221 639 1.56e-17 85.9
MS.gene060986.t1 AT3G60040 27.045 440 264 16 1 404 220 638 1.64e-17 85.9
MS.gene060986.t1 AT4G26350 24.249 466 286 19 13 448 2 430 1.73e-17 84.7
MS.gene060986.t1 AT1G06630 27.021 433 258 21 1 409 1 399 2.14e-17 84.3
MS.gene060986.t1 AT1G06630 27.021 433 258 21 1 409 1 399 2.14e-17 84.3
MS.gene060986.t1 AT1G06630 27.021 433 258 21 1 409 1 399 2.14e-17 84.3
MS.gene060986.t1 AT1G06630 27.021 433 258 21 1 409 1 399 2.14e-17 84.3
MS.gene060986.t1 AT1G06630 28.421 380 224 18 1 356 10 365 2.21e-17 84.3
MS.gene060986.t1 AT1G06630 28.000 375 224 17 1 353 1 351 3.49e-17 83.2
MS.gene060986.t1 AT1G06630 28.000 375 224 17 1 353 1 351 3.49e-17 83.2
MS.gene060986.t1 AT1G06630 28.421 380 224 18 1 356 1 356 4.56e-17 84.0
MS.gene060986.t1 AT1G48400 30.303 231 140 9 12 230 9 230 1.35e-16 82.4
MS.gene060986.t1 AT4G09920 31.928 166 104 3 13 174 2 162 1.38e-16 80.5
MS.gene060986.t1 AT4G09920 31.928 166 104 3 13 174 2 162 1.38e-16 80.5
MS.gene060986.t1 AT4G09920 31.928 166 104 3 13 174 2 162 1.38e-16 80.5
MS.gene060986.t1 AT1G48400 30.303 231 140 9 12 230 9 230 1.51e-16 82.0
MS.gene060986.t1 AT4G09920 31.928 166 104 3 13 174 2 162 1.98e-16 80.5
MS.gene060986.t1 AT4G09920 31.928 166 104 3 13 174 2 162 1.98e-16 80.5
MS.gene060986.t1 AT3G59230 25.257 487 300 20 5 444 4 473 2.04e-16 81.6
MS.gene060986.t1 AT5G56560 23.596 445 292 14 15 445 7 417 2.30e-16 81.3
MS.gene060986.t1 AT4G27050 23.374 492 279 21 11 445 2 452 3.76e-16 80.9
MS.gene060986.t1 AT4G27050 23.374 492 279 21 11 445 2 452 3.76e-16 80.9
MS.gene060986.t1 AT4G27050 23.374 492 279 21 11 445 2 452 3.76e-16 80.9
MS.gene060986.t1 AT4G27050 23.374 492 279 21 11 445 2 452 3.76e-16 80.9
MS.gene060986.t1 AT4G27050 23.374 492 279 21 11 445 2 452 3.76e-16 80.9
MS.gene060986.t1 AT2G26860 24.658 438 250 17 13 412 2 397 4.60e-16 80.1
MS.gene060986.t1 AT2G26860 24.658 438 250 17 13 412 2 397 4.60e-16 80.1
MS.gene060986.t1 AT2G29930 24.583 480 302 18 3 445 2 458 5.33e-16 80.5
MS.gene060986.t1 AT2G29930 24.583 480 302 18 3 445 2 458 5.33e-16 80.5
MS.gene060986.t1 AT5G56380 23.246 456 310 14 13 446 2 439 1.02e-15 79.3
MS.gene060986.t1 AT5G56380 23.246 456 310 14 13 446 2 439 1.02e-15 79.3
MS.gene060986.t1 AT1G06630 29.832 238 147 10 1 226 1 230 1.16e-15 77.8
MS.gene060986.t1 AT4G13965 23.653 427 253 13 5 403 2 383 1.53e-15 79.0
MS.gene060986.t1 AT3G58930 24.025 487 297 18 13 445 2 469 1.90e-15 79.0
MS.gene060986.t1 AT3G58930 24.025 487 297 18 13 445 2 469 1.90e-15 79.0
MS.gene060986.t1 AT3G58930 24.025 487 297 18 13 445 2 469 1.90e-15 79.0
MS.gene060986.t1 AT5G53840 23.045 486 259 21 10 443 15 437 2.09e-15 78.6
MS.gene060986.t1 AT2G29910 29.018 224 141 6 9 227 1 211 2.17e-15 77.4
MS.gene060986.t1 AT2G29910 29.018 224 141 6 9 227 1 211 2.17e-15 77.4
MS.gene060986.t1 AT3G58940 41.379 116 60 4 13 122 2 115 2.48e-15 79.0
MS.gene060986.t1 AT3G58940 41.379 116 60 4 13 122 2 115 2.48e-15 79.0
MS.gene060986.t1 AT3G03040 23.529 459 288 16 13 432 2 436 3.19e-15 78.2
MS.gene060986.t1 AT2G29910 29.018 224 141 6 9 227 1 211 3.29e-15 77.0
MS.gene060986.t1 AT2G29910 29.018 224 141 6 9 227 1 211 3.29e-15 77.0
MS.gene060986.t1 AT2G29910 29.018 224 141 6 9 227 1 211 3.29e-15 77.0
MS.gene060986.t1 AT2G29910 29.018 224 141 6 9 227 1 211 3.29e-15 77.0
MS.gene060986.t1 AT3G26922 26.582 237 150 7 13 240 14 235 3.43e-15 76.6
MS.gene060986.t1 AT3G26922 26.582 237 150 7 13 240 14 235 3.43e-15 76.6
MS.gene060986.t1 AT3G49150 35.862 145 85 5 10 149 13 154 4.07e-15 77.8
MS.gene060986.t1 AT2G29910 29.018 224 141 6 9 227 25 235 4.10e-15 77.0
MS.gene060986.t1 AT3G59240 26.667 465 293 19 12 444 7 455 4.73e-15 77.8
MS.gene060986.t1 AT1G16930 23.409 487 280 18 6 443 4 446 8.89e-15 76.6
MS.gene060986.t1 AT1G16930 23.409 487 280 18 6 443 4 446 8.89e-15 76.6
MS.gene060986.t1 AT1G16930 23.409 487 280 18 6 443 4 446 8.89e-15 76.6
MS.gene060986.t1 AT3G58860 26.111 360 224 14 13 353 7 343 9.65e-15 76.6
MS.gene060986.t1 AT5G56690 25.253 396 258 13 15 392 4 379 1.13e-14 75.9
MS.gene060986.t1 AT3G59190 30.667 150 97 3 3 146 2 150 1.28e-14 75.9
MS.gene060986.t1 AT1G66310 24.843 479 258 20 11 443 17 439 2.52e-14 75.1
MS.gene060986.t1 AT1G55030 25.952 420 253 17 13 412 19 400 2.78e-14 75.1
MS.gene060986.t1 AT1G55030 25.952 420 253 17 13 412 9 390 3.11e-14 74.7
MS.gene060986.t1 AT1G58310 26.200 500 284 20 12 445 7 487 3.14e-14 75.1
MS.gene060986.t1 AT5G56420 22.009 468 286 16 9 445 2 421 3.16e-14 74.7
MS.gene060986.t1 AT5G56420 22.009 468 286 16 9 445 2 421 3.16e-14 74.7
MS.gene060986.t1 AT5G56420 22.009 468 286 16 9 445 2 421 3.16e-14 74.7
MS.gene060986.t1 AT3G59190 30.882 136 88 2 3 133 2 136 3.19e-14 75.1
MS.gene060986.t1 AT3G49030 24.946 461 287 18 11 448 19 443 4.11e-14 74.3
MS.gene060986.t1 AT5G44490 23.493 481 287 19 5 443 9 450 4.75e-14 74.3
MS.gene060986.t1 AT5G44490 23.493 481 287 19 5 443 9 450 5.79e-14 73.9
MS.gene060986.t1 AT3G58900 25.854 410 256 17 13 385 2 400 5.93e-14 73.9
MS.gene060986.t1 AT5G41630 35.000 120 72 2 10 124 9 127 6.58e-14 73.9
MS.gene060986.t1 AT5G41830 30.556 180 102 5 1 158 1 179 8.54e-14 73.9
MS.gene060986.t1 AT2G26030 21.991 432 277 17 13 411 4 408 1.00e-13 73.2
MS.gene060986.t1 AT2G26030 21.991 432 277 17 13 411 4 408 1.00e-13 73.2
MS.gene060986.t1 AT1G69630 34.896 192 105 8 1 180 1 184 1.08e-13 73.2
MS.gene060986.t1 AT1G78760 24.160 476 271 25 10 443 13 440 1.47e-13 72.8
MS.gene060986.t1 AT2G26030 21.818 440 273 17 13 411 4 413 1.49e-13 72.8
MS.gene060986.t1 AT3G59210 25.581 473 294 19 12 444 6 460 1.73e-13 72.8
MS.gene060986.t1 AT3G59210 25.581 473 294 19 12 444 6 460 1.73e-13 72.8
MS.gene060986.t1 AT3G59210 25.581 473 294 19 12 444 6 460 1.73e-13 72.8
MS.gene060986.t1 AT3G59210 25.581 473 294 19 12 444 6 460 1.73e-13 72.8
MS.gene060986.t1 AT3G59210 25.581 473 294 19 12 444 6 460 1.73e-13 72.8
MS.gene060986.t1 AT5G56410 24.651 430 259 18 20 412 10 411 2.05e-13 72.4
MS.gene060986.t1 AT4G00160 24.211 475 291 17 2 445 5 441 2.76e-13 72.0
MS.gene060986.t1 AT3G58900 37.405 131 72 5 13 135 2 130 3.13e-13 70.9
MS.gene060986.t1 AT3G58900 37.405 131 72 5 13 135 2 130 4.78e-13 70.5
MS.gene060986.t1 AT3G58900 37.405 131 72 5 13 135 2 130 4.78e-13 70.5
MS.gene060986.t1 AT3G52680 21.610 472 305 14 2 445 10 444 6.26e-13 70.9
MS.gene060986.t1 AT3G44060 24.444 450 289 14 18 444 4 425 6.58e-13 70.9
MS.gene060986.t1 AT1G80470 23.810 483 273 20 3 443 5 434 7.93e-13 70.5
MS.gene060986.t1 AT3G50710 21.272 456 301 16 13 443 2 424 8.53e-13 70.5
MS.gene060986.t1 AT5G38392 32.215 149 90 4 13 152 2 148 1.04e-12 67.8
MS.gene060986.t1 AT4G10410 32.653 147 93 2 27 172 1 142 1.31e-12 68.2
MS.gene060986.t1 AT3G58880 35.398 113 65 3 13 119 3 113 1.53e-12 69.7
MS.gene060986.t1 AT3G49030 28.704 216 141 5 11 221 19 226 1.59e-12 69.3
MS.gene060986.t1 AT1G64540 27.035 344 193 15 12 346 4 298 1.64e-12 69.7
MS.gene060986.t1 AT1G64540 27.035 344 193 15 12 346 4 298 1.64e-12 69.7
MS.gene060986.t1 AT4G13960 24.263 441 258 17 13 407 2 412 2.61e-12 68.9
MS.gene060986.t1 AT4G13960 24.263 441 258 17 13 407 2 412 2.61e-12 68.9
MS.gene060986.t1 AT5G22730 26.158 367 233 13 10 354 26 376 5.97e-12 67.4
MS.gene060986.t1 AT1G52650 25.296 423 262 16 13 400 2 405 7.34e-12 67.8
MS.gene060986.t1 AT3G59000 26.891 238 159 8 13 241 2 233 9.50e-12 66.6
MS.gene060986.t1 AT5G22610 33.333 144 82 3 13 148 18 155 1.16e-11 67.0
MS.gene060986.t1 AT5G62970 24.385 447 255 17 20 417 10 422 1.24e-11 67.0
MS.gene060986.t1 AT5G22610 33.333 144 82 3 13 148 18 155 1.44e-11 66.6
MS.gene060986.t1 AT5G38590 26.636 214 146 4 13 223 2 207 1.61e-11 65.5
MS.gene060986.t1 AT5G56440 31.395 172 105 7 13 178 2 166 2.62e-11 65.9
MS.gene060986.t1 AT3G58960 25.410 366 232 15 13 353 2 351 2.69e-11 65.9
MS.gene060986.t1 AT3G49040 30.088 226 121 9 13 221 17 222 2.75e-11 64.7
MS.gene060986.t1 AT4G00320 29.252 147 93 2 1 142 1 141 3.33e-11 65.5
MS.gene060986.t1 AT1G05080 23.305 472 285 15 9 445 9 438 3.64e-11 65.5
MS.gene060986.t1 AT1G78840 23.661 448 307 16 12 443 4 432 3.88e-11 65.1
MS.gene060986.t1 AT1G78840 23.661 448 307 16 12 443 4 432 3.88e-11 65.1
MS.gene060986.t1 AT4G13985 29.379 177 104 7 1 157 1 176 4.38e-11 65.1
MS.gene060986.t1 AT3G58980 23.555 467 300 19 13 447 2 443 6.29e-11 65.1
MS.gene060986.t1 AT1G78750 29.442 197 116 7 1 180 1 191 6.34e-11 64.7
MS.gene060986.t1 AT1G78750 29.442 197 116 7 1 180 1 191 6.34e-11 64.7
MS.gene060986.t1 AT5G38390 24.201 438 242 14 13 400 2 399 7.02e-11 64.3
MS.gene060986.t1 AT3G59170 31.548 168 86 4 12 151 6 172 7.82e-11 64.3
MS.gene060986.t1 AT3G59160 25.728 412 223 17 1 352 2 390 8.09e-11 64.3

Find 49 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAAGTATTTCAGTTTAA+AGG 0.139696 2.3:-23863110 MS.gene060986:CDS
CAAGAAGATGGATTCAAGTT+TGG 0.268140 2.3:-23864658 MS.gene060986:CDS
AAACAAGAGTATTAAGAATA+GGG 0.284563 2.3:+23863633 None:intergenic
ATCATGTAAATATGCCATTA+AGG 0.287357 2.3:-23864093 MS.gene060986:CDS
GCATCGACTATAAACCTTAA+TGG 0.306271 2.3:+23864079 None:intergenic
TGTTGTTGATGAAGATAAAA+AGG 0.327183 2.3:-23863970 MS.gene060986:CDS
TTCATCAATCTGCCTGTCTT+TGG 0.333180 2.3:-23863722 MS.gene060986:CDS
AAAACAAGAGTATTAAGAAT+AGG 0.361596 2.3:+23863632 None:intergenic
GCTTCAAACACTCTGAGAAT+TGG 0.368609 2.3:+23864212 None:intergenic
TCTCCTACTGTTGTTTCCCT+TGG 0.376624 2.3:+23864773 None:intergenic
AAACTAATGTTCTGTGTTGT+TGG 0.384561 2.3:+23864173 None:intergenic
TCTGAGATGCATCATATTGA+TGG 0.389112 2.3:+23864486 None:intergenic
CCTAACAGATTTCTCTTATG+AGG 0.392166 2.3:-23864057 MS.gene060986:CDS
GAACGAGCACGATCTTTGTT+TGG 0.397360 2.3:-23863078 MS.gene060986:CDS
TACATGATTCATTTGAATGA+TGG 0.398273 2.3:+23864108 None:intergenic
TGTTGATTTGAAGAAAGTTA+AGG 0.423111 2.3:-23862979 MS.gene060986:CDS
TTAAGCAAAGAGAGAAACTT+TGG 0.423904 2.3:+23864513 None:intergenic
AGAAGGAAGGAAAACTTTAT+CGG 0.440007 2.3:+23864403 None:intergenic
GTGCTAACCGCGTCTACGAT+TGG 0.447348 2.3:+23864692 None:intergenic
ACTATCATCAAAATCTAGAT+TGG 0.449212 2.3:+23864625 None:intergenic
GGATTTGCTTTATCTTAGAA+AGG 0.458843 2.3:-23864454 MS.gene060986:CDS
GTTGGCAGATGCAGCAATCA+TGG 0.478397 2.3:-23863045 MS.gene060986:CDS
TTGCATTTGTTAGAACACTT+TGG 0.479866 2.3:+23862939 None:intergenic
CTAGCGTCTTATCAAGAAGA+TGG 0.494487 2.3:-23864670 MS.gene060986:CDS
TAAGTTAACCTTCCAAAGAC+AGG 0.506614 2.3:+23863710 None:intergenic
CCTCATAAGAGAAATCTGTT+AGG 0.515819 2.3:+23864057 None:intergenic
AACTTATCTGCAACTAAATG+AGG 0.518407 2.3:-23863693 MS.gene060986:CDS
CTCAGAGTGTTTGAAGCTAG+AGG 0.531893 2.3:-23864206 MS.gene060986:CDS
TCAATCTGCCTGTCTTTGGA+AGG 0.533036 2.3:-23863718 MS.gene060986:CDS
AACAAGAGTATTAAGAATAG+GGG 0.536684 2.3:+23863634 None:intergenic
CTAACAGATTTCTCTTATGA+GGG 0.536932 2.3:-23864056 MS.gene060986:CDS
CTACGATTGGAATGAAAGAC+AGG 0.557450 2.3:+23864705 None:intergenic
ATGCATCTCAGATAAGTGAA+TGG 0.564518 2.3:-23864475 MS.gene060986:CDS
GGAGATGATGATGATATCGC+CGG 0.568358 2.3:-23863024 MS.gene060986:CDS
CTGCAACTAAATGAGGTCAC+TGG 0.573768 2.3:-23863686 MS.gene060986:CDS
ATGATGGTTCCATATTGCTA+TGG 0.577377 2.3:+23864124 None:intergenic
ATGGAAAACTTCTCAAGTAA+CGG 0.587903 2.3:+23864143 None:intergenic
TCAGAGTGTTTGAAGCTAGA+GGG 0.587975 2.3:-23864205 MS.gene060986:CDS
TTGTTTGGTAAAATTCGTGT+TGG 0.601366 2.3:-23863063 MS.gene060986:CDS
TTAAAAGTGAATCAGAAGGA+AGG 0.609122 2.3:+23864390 None:intergenic
AGATGTCTTTACTTCTGCAA+CGG 0.610724 2.3:-23863156 MS.gene060986:CDS
CAGCTTAAAAGTGAATCAGA+AGG 0.617029 2.3:+23864386 None:intergenic
TTGAAGCTAGAGGGTGCGAA+TGG 0.623897 2.3:-23864196 MS.gene060986:CDS
GGTAGTCATGGATTCACCAA+GGG 0.655137 2.3:-23864789 None:intergenic
TCACCAAGGGAAACAACAGT+AGG 0.661012 2.3:-23864776 MS.gene060986:CDS
TCTCAAACAAATCGATAACG+TGG 0.671900 2.3:-23863910 MS.gene060986:CDS
TTTCATTCCAATCGTAGACG+CGG 0.694985 2.3:-23864699 MS.gene060986:CDS
AGGTAGTCATGGATTCACCA+AGG 0.701421 2.3:-23864790 None:intergenic
AAGCTTGACAGAAAGCAGTG+AGG 0.745455 2.3:+23863131 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAAAATTTAGCATTTCT+GGG - chr2.3:23863401-23863420 MS.gene060986:intron 20.0%
!!! AAAACAAGAGTATTAAGAAT+AGG + chr2.3:23864061-23864080 None:intergenic 20.0%
!!! AAACAAGAGTATTAAGAATA+GGG + chr2.3:23864060-23864079 None:intergenic 20.0%
!!! ATTTATCTTTTGTTATACAC+AGG - chr2.3:23864428-23864447 MS.gene060986:CDS 20.0%
!!! TTCAAAGTATTTCAGTTTAA+AGG - chr2.3:23864580-23864599 MS.gene060986:CDS 20.0%
! ACTATCATCAAAATCTAGAT+TGG + chr2.3:23863068-23863087 None:intergenic 25.0%
! ATAGTTTATATGAGAACAGT+TGG - chr2.3:23864400-23864419 MS.gene060986:CDS 25.0%
! ATCATGTAAATATGCCATTA+AGG - chr2.3:23863597-23863616 MS.gene060986:intron 25.0%
! CTTCAAAAATTTAGCATTTC+TGG - chr2.3:23863400-23863419 MS.gene060986:intron 25.0%
! TAAGAAGAAAAAGATGCAAA+AGG - chr2.3:23863099-23863118 MS.gene060986:CDS 25.0%
! TACATGATTCATTTGAATGA+TGG + chr2.3:23863585-23863604 None:intergenic 25.0%
! TGAAGATAAAAAGGATAGAA+TGG - chr2.3:23863729-23863748 MS.gene060986:CDS 25.0%
!! AGTTATATCTTTTGAGCAAT+TGG + chr2.3:23863449-23863468 None:intergenic 25.0%
!! CAGAAATGCTAAATTTTTGA+AGG + chr2.3:23863402-23863421 None:intergenic 25.0%
!! TGTTGTTGATGAAGATAAAA+AGG - chr2.3:23863720-23863739 MS.gene060986:CDS 25.0%
!! TTTCTTTTACGATACATGAA+CGG - chr2.3:23863836-23863855 MS.gene060986:intron 25.0%
!!! AACAAGAGTATTAAGAATAG+GGG + chr2.3:23864059-23864078 None:intergenic 25.0%
!!! GCTAAAGTTATTGTTTTACA+AGG - chr2.3:23863807-23863826 MS.gene060986:intron 25.0%
!!! TAAATTTTTGAAGGTTTTGG+AGG + chr2.3:23863393-23863412 None:intergenic 25.0%
!!! TGCTAAATTTTTGAAGGTTT+TGG + chr2.3:23863396-23863415 None:intergenic 25.0%
!!! TGTTGATTTGAAGAAAGTTA+AGG - chr2.3:23864711-23864730 MS.gene060986:CDS 25.0%
AAACTAATGTTCTGTGTTGT+TGG + chr2.3:23863520-23863539 None:intergenic 30.0%
AACAAGCTGAAAACAAGTTA+AGG + chr2.3:23864240-23864259 None:intergenic 30.0%
AACACTAAACACATAAACTG+TGG + chr2.3:23864129-23864148 None:intergenic 30.0%
AACTTATCTGCAACTAAATG+AGG - chr2.3:23863997-23864016 MS.gene060986:CDS 30.0%
AAGGATAGAATGGAAAAACT+TGG - chr2.3:23863739-23863758 MS.gene060986:CDS 30.0%
ACTCATGACACAAAAATTTC+AGG - chr2.3:23864492-23864511 MS.gene060986:CDS 30.0%
AGAAGGAAGGAAAACTTTAT+CGG + chr2.3:23863290-23863309 None:intergenic 30.0%
ATGGAAAACTTCTCAAGTAA+CGG + chr2.3:23863550-23863569 None:intergenic 30.0%
CTAACAGATTTCTCTTATGA+GGG - chr2.3:23863634-23863653 MS.gene060986:CDS 30.0%
CTCATGACACAAAAATTTCA+GGG - chr2.3:23864493-23864512 MS.gene060986:CDS 30.0%
TTAAAAGTGAATCAGAAGGA+AGG + chr2.3:23863303-23863322 None:intergenic 30.0%
TTAAGCAAAGAGAGAAACTT+TGG + chr2.3:23863180-23863199 None:intergenic 30.0%
TTGTTTGGTAAAATTCGTGT+TGG - chr2.3:23864627-23864646 MS.gene060986:CDS 30.0%
! AGAAGTTTTCCATAGCAATA+TGG - chr2.3:23863557-23863576 MS.gene060986:intron 30.0%
! GGATTTGCTTTATCTTAGAA+AGG - chr2.3:23863236-23863255 MS.gene060986:intron 30.0%
! TTGCATTTGTTAGAACACTT+TGG + chr2.3:23864754-23864773 None:intergenic 30.0%
!!! GATTTTGATGATAGTTTGCT+CGG - chr2.3:23863073-23863092 MS.gene060986:CDS 30.0%
AGATGTCTTTACTTCTGCAA+CGG - chr2.3:23864534-23864553 MS.gene060986:CDS 35.0%
ATGATGGTTCCATATTGCTA+TGG + chr2.3:23863569-23863588 None:intergenic 35.0%
ATGCATCTCAGATAAGTGAA+TGG - chr2.3:23863215-23863234 MS.gene060986:intron 35.0%
CAGCTTAAAAGTGAATCAGA+AGG + chr2.3:23863307-23863326 None:intergenic 35.0%
CCTAACAGATTTCTCTTATG+AGG - chr2.3:23863633-23863652 MS.gene060986:CDS 35.0%
CCTCATAAGAGAAATCTGTT+AGG + chr2.3:23863636-23863655 None:intergenic 35.0%
GTGGAATTTCTTTGAACGAA+AGG + chr2.3:23864110-23864129 None:intergenic 35.0%
TAAAATTTCCCTTGTCCTAC+AGG - chr2.3:23863922-23863941 MS.gene060986:CDS 35.0%
TAAGTTAACCTTCCAAAGAC+AGG + chr2.3:23863983-23864002 None:intergenic 35.0%
TCTCAAACAAATCGATAACG+TGG - chr2.3:23863780-23863799 MS.gene060986:intron 35.0%
! CAAGAAGATGGATTCAAGTT+TGG - chr2.3:23863032-23863051 MS.gene060986:CDS 35.0%
! TCTGAGATGCATCATATTGA+TGG + chr2.3:23863207-23863226 None:intergenic 35.0%
!! CTTGTTTTCATAAGCTCTCT+AGG - chr2.3:23864254-23864273 MS.gene060986:CDS 35.0%
!! GCATCGACTATAAACCTTAA+TGG + chr2.3:23863614-23863633 None:intergenic 35.0%
!! TTTTCATAAGCTCTCTAGGA+TGG - chr2.3:23864258-23864277 MS.gene060986:CDS 35.0%
!! TTTTGGAGGCAAACAGATAT+GGG + chr2.3:23863379-23863398 None:intergenic 35.0%
CCTTAAAACCTGTAGGACAA+GGG + chr2.3:23863933-23863952 None:intergenic 40.0%
CTACGATTGGAATGAAAGAC+AGG + chr2.3:23862988-23863007 None:intergenic 40.0%
CTAGCGTCTTATCAAGAAGA+TGG - chr2.3:23863020-23863039 MS.gene060986:CDS 40.0%
TACCATGCCTTAAAACCTGT+AGG + chr2.3:23863940-23863959 None:intergenic 40.0%
TTCATCAATCTGCCTGTCTT+TGG - chr2.3:23863968-23863987 MS.gene060986:CDS 40.0%
TTTCATTCCAATCGTAGACG+CGG - chr2.3:23862991-23863010 MS.gene060986:CDS 40.0%
! GCTTCAAACACTCTGAGAAT+TGG + chr2.3:23863481-23863500 None:intergenic 40.0%
! TCAGAGTGTTTGAAGCTAGA+GGG - chr2.3:23863485-23863504 MS.gene060986:intron 40.0%
!!! GTTTTGGAGGCAAACAGATA+TGG + chr2.3:23863380-23863399 None:intergenic 40.0%
AAGCTTGACAGAAAGCAGTG+AGG + chr2.3:23864562-23864581 None:intergenic 45.0%
CTGCAACTAAATGAGGTCAC+TGG - chr2.3:23864004-23864023 MS.gene060986:CDS 45.0%
GAACGAGCACGATCTTTGTT+TGG - chr2.3:23864612-23864631 MS.gene060986:CDS 45.0%
GCCTTAAAACCTGTAGGACA+AGG + chr2.3:23863934-23863953 None:intergenic 45.0%
TCAATCTGCCTGTCTTTGGA+AGG - chr2.3:23863972-23863991 MS.gene060986:CDS 45.0%
TCACCAAGGGAAACAACAGT+AGG - chr2.3:23862914-23862933 MS.gene060986:CDS 45.0%
! CCCTTGTCCTACAGGTTTTA+AGG - chr2.3:23863930-23863949 MS.gene060986:CDS 45.0%
! CTCAGAGTGTTTGAAGCTAG+AGG - chr2.3:23863484-23863503 MS.gene060986:intron 45.0%
! GGAGATGATGATGATATCGC+CGG - chr2.3:23864666-23864685 MS.gene060986:CDS 45.0%
!! TCTCCTACTGTTGTTTCCCT+TGG + chr2.3:23862920-23862939 None:intergenic 45.0%
!!! GTCCTACAGGTTTTAAGGCA+TGG - chr2.3:23863935-23863954 MS.gene060986:CDS 45.0%
!!! TGATGATATCGCCGGCTTTT+TGG - chr2.3:23864674-23864693 MS.gene060986:CDS 45.0%
GCATATCGCAGCCAAAAAGC+CGG + chr2.3:23864688-23864707 None:intergenic 50.0%
GTTGGCAGATGCAGCAATCA+TGG - chr2.3:23864645-23864664 MS.gene060986:CDS 50.0%
! TTGAAGCTAGAGGGTGCGAA+TGG - chr2.3:23863494-23863513 MS.gene060986:intron 50.0%
GTGCTAACCGCGTCTACGAT+TGG + chr2.3:23863001-23863020 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 23862908 23864804 23862908 ID=MS.gene060986
chr2.3 mRNA 23862908 23864804 23862908 ID=MS.gene060986.t1;Parent=MS.gene060986
chr2.3 exon 23863884 23864804 23863884 ID=MS.gene060986.t1.exon1;Parent=MS.gene060986.t1
chr2.3 CDS 23863884 23864804 23863884 ID=cds.MS.gene060986.t1;Parent=MS.gene060986.t1
chr2.3 exon 23863625 23863768 23863625 ID=MS.gene060986.t1.exon2;Parent=MS.gene060986.t1
chr2.3 CDS 23863625 23863768 23863625 ID=cds.MS.gene060986.t1;Parent=MS.gene060986.t1
chr2.3 exon 23862908 23863198 23862908 ID=MS.gene060986.t1.exon3;Parent=MS.gene060986.t1
chr2.3 CDS 23862908 23863198 23862908 ID=cds.MS.gene060986.t1;Parent=MS.gene060986.t1
Gene Sequence

>MS.gene060986

ATGGATTCACCAAGGGAAACAACAGTAGGAGAAAGAGATTTGATTAGCACATTACATGAAAGCATTCTTAGTCAGATCCTGTCTTTCATTCCAATCGTAGACGCGGTTAGCACTAGCGTCTTATCAAGAAGATGGATTCAAGTTTGGAAATGCATAACCAATCTAGATTTTGATGATAGTTTGCTCGGTTCTAAGAAGAAAAAGATGCAAAAGGAACAGTTTGTGAATTTTGTTGAAAAAGTGCTTATTCACTTTACTAACTCAAGCATCCAAAGTTTCTCTCTTTGCTTAACTTGCCATCAATATGATGCATCTCAGATAAGTGAATGGATTTGCTTTATCTTAGAAAGGAGAGTTCAAAAGCTTCGTGTTCAATATGCCGATAAAGTTTTCCTTCCTTCTGATTCACTTTTAAGCTGCAATTCTTTAGTCGATTTGACGCTTCAAATGAGATGTACTCTTAGTCTTCCCATATCTGTTTGCCTCCAAAACCTTCAAAAATTTAGCATTTCTGGGATTAAATTAGTGAGTGATTTGTCCAATTGCTCAAAAGATATAACTCTTAACTTTCCAATTCTCAGAGTGTTTGAAGCTAGAGGGTGCGAATGGCCAACAACACAGAACATTAGTTTACAAGTACCGTTACTTGAGAAGTTTTCCATAGCAATATGGAACCATCATTCAAATGAATCATGTAAATATGCCATTAAGGTTTATAGTCGATGCCTAACAGATTTCTCTTATGAGGGCGATCTTGAACAAGACATCGTTCTCTGTGATTCGTCATCAATTCGTAATGCTTCTATTGTGATTGTTGTTGATGAAGATAAAAAGGATAGAATGGAAAAACTTGGATTTCAAGCACGTAGTCTTCTCAAACAAATCGATAACGTGGAACAGCTAAAGTTATTGTTTTACAAGGTATGTTTTTCTTTTACGATACATGAACGGAAATAGTTTTGTATGACAAAAACATGTTGTGATAATTGAACAAAAAAAAATATTAGAATTTGATAAAATTTCCCTTGTCCTACAGGTTTTAAGGCATGGTAAAGATATTTTCATCAATCTGCCTGTCTTTGGAAGGTTAACTTATCTGCAACTAAATGAGGTCACTGGTGAAGCTTTGTTGCAATTACTTCACAATTCCCCTATTCTTAATACTCTTGTTTTACTTAATGTAAGTTTAGTTATTCTTGCCTTTCGTTCAAAGAAATTCCACAGTTTATGTGTTTAGTGTTGTTTAGATTGACATATTTGAGTTTATCTACTAGTATAAACACTTATGAGACTGTTTGAGATAGCTTATAGAAACAACTTATGATATGTCCTTAACTTGTTTTCAGCTTGTTTTCATAAGCTCTCTAGGATGGTTTATGAAAACAGCTTATAGTTTATATGAGATAGCTTATAGAAACAACTTATGATATGTCCTTAACTTGTTTTCAGCTTGTTTTCATAAGCTCTCTAGGATGGTTTATGAAAACAGCTTATAGTTTATATGAGAACAGTTGGACTTAATTTATCTTTTGTTATACACAGGCAGCACTTATGTTATCACAAACTAATTTAAATGATAGAAAAACTCATGACACAAAAATTTCAGGGAGTTGCTGATTTAGACAAAGATGTCTTTACTTCTGCAACGGTGCCTCACTGCTTTCTGTCAAGCTTCAAAGTATTTCAGTTTAAAGGATTTAATGCGAACGAGCACGATCTTTGTTTGGTAAAATTCGTGTTGGCAGATGCAGCAATCATGGAGATGATGATGATATCGCCGGCTTTTTGGCTGCGATATGCAAATGTTGATTTGAAGAAAGTTAAGGAGCAGATACTCTCATTACCAAAGTGTTCTAACAAATGCAAGATAGAATTTTCTGATATCAGTAGATGCTGA

Protein sequence

>MS.gene060986.t1

MDSPRETTVGERDLISTLHESILSQILSFIPIVDAVSTSVLSRRWIQVWKCITNLDFDDSLLGSKKKKMQKEQFVNFVEKVLIHFTNSSIQSFSLCLTCHQYDASQISEWICFILERRVQKLRVQYADKVFLPSDSLLSCNSLVDLTLQMRCTLSLPISVCLQNLQKFSISGIKLVSDLSNCSKDITLNFPILRVFEARGCEWPTTQNISLQVPLLEKFSIAIWNHHSNESCKYAIKVYSRCLTDFSYEGDLEQDIVLCDSSSIRNASIVIVVDEDKKDRMEKLGFQARSLLKQIDNVEQLKLLFYKVLRHGKDIFINLPVFGRLTYLQLNEVTGEALLQLLHNSPILNTLVLLNGVADLDKDVFTSATVPHCFLSSFKVFQFKGFNANEHDLCLVKFVLADAAIMEMMMISPAFWLRYANVDLKKVKEQILSLPKCSNKCKIEFSDISRC