Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06650.t1 | XP_024635978.1 | 97.7 | 656 | 14 | 1 | 14 | 669 | 1 | 655 | 0.00E+00 | 1281.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06650.t1 | Q2EF88 | 76.5 | 652 | 149 | 3 | 19 | 669 | 12 | 660 | 2.8e-293 | 1008.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06650.t1 | G7J868 | 97.7 | 656 | 14 | 1 | 14 | 669 | 1 | 655 | 0.0e+00 | 1281.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057201 | MS.gene06650 | 0.923451 | 2.61E-89 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07505 | MS.gene06650 | PPI |
| MS.gene86821 | MS.gene06650 | PPI |
| MS.gene004968 | MS.gene06650 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06650.t1 | MTR_3g092090 | 97.565 | 657 | 15 | 1 | 14 | 670 | 1 | 656 | 0.0 | 1317 |
| MS.gene06650.t1 | MTR_3g092090 | 97.710 | 655 | 14 | 1 | 14 | 668 | 1 | 654 | 0.0 | 1315 |
| MS.gene06650.t1 | MTR_1g007580 | 75.301 | 664 | 155 | 5 | 14 | 670 | 1 | 662 | 0.0 | 1027 |
| MS.gene06650.t1 | MTR_0312s0020 | 74.659 | 659 | 160 | 5 | 18 | 670 | 5 | 662 | 0.0 | 1008 |
| MS.gene06650.t1 | MTR_1g007540 | 74.659 | 659 | 160 | 5 | 18 | 670 | 5 | 662 | 0.0 | 1008 |
| MS.gene06650.t1 | MTR_1g077840 | 64.955 | 662 | 216 | 4 | 17 | 670 | 17 | 670 | 0.0 | 905 |
| MS.gene06650.t1 | MTR_7g028250 | 54.114 | 632 | 284 | 2 | 45 | 670 | 35 | 666 | 0.0 | 753 |
| MS.gene06650.t1 | MTR_5g091600 | 55.723 | 664 | 283 | 6 | 14 | 670 | 1 | 660 | 0.0 | 747 |
| MS.gene06650.t1 | MTR_6g077870 | 52.950 | 661 | 293 | 7 | 21 | 670 | 37 | 690 | 0.0 | 734 |
| MS.gene06650.t1 | MTR_3g063490 | 54.519 | 675 | 288 | 7 | 3 | 670 | 12 | 674 | 0.0 | 729 |
| MS.gene06650.t1 | MTR_3g063520 | 54.478 | 670 | 284 | 6 | 19 | 670 | 2 | 668 | 0.0 | 713 |
| MS.gene06650.t1 | MTR_6g077870 | 55.303 | 528 | 222 | 5 | 154 | 670 | 5 | 529 | 0.0 | 607 |
| MS.gene06650.t1 | MTR_1626s0010 | 71.489 | 235 | 65 | 1 | 226 | 458 | 1 | 235 | 1.03e-120 | 359 |
| MS.gene06650.t1 | MTR_0312s0050 | 71.074 | 121 | 30 | 2 | 14 | 130 | 1 | 120 | 1.81e-47 | 163 |
| MS.gene06650.t1 | MTR_5g091615 | 60.417 | 144 | 56 | 1 | 528 | 670 | 57 | 200 | 6.03e-47 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06650.t1 | AT5G53550 | 75.836 | 658 | 157 | 2 | 14 | 670 | 5 | 661 | 0.0 | 1036 |
| MS.gene06650.t1 | AT5G53550 | 75.836 | 658 | 157 | 2 | 14 | 670 | 5 | 661 | 0.0 | 1036 |
| MS.gene06650.t1 | AT5G53550 | 75.836 | 658 | 157 | 2 | 14 | 670 | 5 | 661 | 0.0 | 1036 |
| MS.gene06650.t1 | AT5G53550 | 75.836 | 658 | 157 | 2 | 14 | 670 | 5 | 661 | 0.0 | 1036 |
| MS.gene06650.t1 | AT5G53550 | 75.836 | 658 | 157 | 2 | 14 | 670 | 5 | 661 | 0.0 | 1036 |
| MS.gene06650.t1 | AT5G24380 | 71.603 | 655 | 175 | 5 | 25 | 670 | 1 | 653 | 0.0 | 988 |
| MS.gene06650.t1 | AT4G24120 | 64.286 | 658 | 227 | 4 | 17 | 670 | 10 | 663 | 0.0 | 907 |
| MS.gene06650.t1 | AT5G53550 | 77.756 | 499 | 111 | 0 | 172 | 670 | 1 | 499 | 0.0 | 818 |
| MS.gene06650.t1 | AT1G65730 | 57.594 | 665 | 267 | 8 | 17 | 670 | 5 | 665 | 0.0 | 783 |
| MS.gene06650.t1 | AT5G41000 | 54.021 | 659 | 293 | 4 | 22 | 670 | 2 | 660 | 0.0 | 753 |
| MS.gene06650.t1 | AT3G27020 | 52.036 | 663 | 305 | 5 | 16 | 670 | 6 | 663 | 0.0 | 732 |
| MS.gene06650.t1 | AT5G41000 | 52.527 | 653 | 287 | 4 | 22 | 670 | 2 | 635 | 0.0 | 714 |
| MS.gene06650.t1 | AT1G48370 | 52.080 | 697 | 283 | 5 | 20 | 670 | 9 | 700 | 0.0 | 701 |
| MS.gene06650.t1 | AT3G17650 | 55.280 | 644 | 269 | 6 | 41 | 670 | 52 | 690 | 0.0 | 698 |
| MS.gene06650.t1 | AT3G17650 | 55.280 | 644 | 269 | 6 | 41 | 670 | 52 | 690 | 0.0 | 698 |
| MS.gene06650.t1 | AT1G48370 | 55.932 | 531 | 219 | 3 | 155 | 670 | 7 | 537 | 0.0 | 573 |
| MS.gene06650.t1 | AT5G41000 | 54.959 | 484 | 211 | 3 | 194 | 670 | 1 | 484 | 0.0 | 563 |
| MS.gene06650.t1 | AT5G45450 | 54.545 | 198 | 83 | 2 | 474 | 670 | 1 | 192 | 6.05e-62 | 206 |
Find 151 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATAGAAACATGGCAATTT+TGG | 0.087728 | 3.3:+76885164 | MS.gene06650:CDS |
| CTTTCTTCTTCATTGCTTCT+AGG | 0.098551 | 3.3:-76882348 | None:intergenic |
| GCTACTGCTGTTCTTATTAA+TGG | 0.102732 | 3.3:+76883722 | MS.gene06650:CDS |
| CATCAAGAGGCAACGGTTTC+TGG | 0.144768 | 3.3:-76884630 | None:intergenic |
| ATTTCCATTGCCTTGATTCT+TGG | 0.193274 | 3.3:+76884390 | MS.gene06650:CDS |
| TTTGTTCAATTTCCTACTTT+TGG | 0.201094 | 3.3:+76883965 | MS.gene06650:CDS |
| ATTTGCTATAGTAGCTAATT+TGG | 0.203777 | 3.3:+76885248 | MS.gene06650:CDS |
| ATCCATTCTCGCTTTGTTAA+AGG | 0.211152 | 3.3:+76885488 | MS.gene06650:CDS |
| TTCTTGGTGCTGTGGTTTCT+TGG | 0.236646 | 3.3:+76884184 | MS.gene06650:CDS |
| GTGATAATTGTAGGTGGTTT+TGG | 0.241603 | 3.3:+76883218 | MS.gene06650:intron |
| ATGATTCCTGCAGTTGCTTC+TGG | 0.250260 | 3.3:+76885429 | MS.gene06650:CDS |
| GTTAATTTATCATTACTTCT+TGG | 0.262551 | 3.3:+76884168 | MS.gene06650:CDS |
| CTCGGCTTCTGCAATGCTTA+TGG | 0.273052 | 3.3:+76884814 | MS.gene06650:CDS |
| AGCTACTTTCCCGTAGTTAT+AGG | 0.273083 | 3.3:-76884863 | None:intergenic |
| AGGCAACGGTTTCTGGTTAC+TGG | 0.282115 | 3.3:-76884623 | None:intergenic |
| AGACTCCTCATGCTACTTTC+TGG | 0.288803 | 3.3:-76884264 | None:intergenic |
| AAATATTACTACCTTTCTAA+TGG | 0.292121 | 3.3:-76883393 | None:intergenic |
| CTAGGTAGAATGTTCGGATT+TGG | 0.292172 | 3.3:+76885544 | MS.gene06650:intron |
| TCTTGGTGCTGTGGTTTCTT+GGG | 0.298595 | 3.3:+76884185 | MS.gene06650:CDS |
| CAAGAGAAAACATTCCTATA+TGG | 0.305526 | 3.3:+76884677 | MS.gene06650:CDS |
| CTAATAGCTAGTCTTATAAT+TGG | 0.306234 | 3.3:+76882471 | MS.gene06650:CDS |
| TCACATCTCCTTTAGGAGTA+TGG | 0.316180 | 3.3:-76883748 | None:intergenic |
| GGTGTAGTTGCTGGACTTGT+AGG | 0.321187 | 3.3:+76884922 | MS.gene06650:CDS |
| TTTGTGCTTGCCGCCTTAGC+TGG | 0.321202 | 3.3:+76884889 | MS.gene06650:CDS |
| CTTACTTATTGGGGTTGAAT+AGG | 0.324163 | 3.3:+76883243 | MS.gene06650:CDS |
| AATATTACTACCTTTCTAAT+GGG | 0.327178 | 3.3:-76883392 | None:intergenic |
| AATGTTTCTGCTGCTCTACT+TGG | 0.337923 | 3.3:+76882555 | MS.gene06650:CDS |
| GCTAATTTGGTAAGAGATCT+TGG | 0.343946 | 3.3:+76885261 | MS.gene06650:CDS |
| TTTCCCAGGAAGCAGGTTCA+TGG | 0.348721 | 3.3:+76883866 | MS.gene06650:intron |
| TTGGCCATCACATCTCCTTT+AGG | 0.349476 | 3.3:-76883755 | None:intergenic |
| TGAAGAGGGTCAAGTGGCTT+TGG | 0.350110 | 3.3:+76882395 | MS.gene06650:CDS |
| CAGCAGAAACATTGAGATTA+GGG | 0.371403 | 3.3:-76882545 | None:intergenic |
| AGAATGTTCGGATTTGGATT+TGG | 0.378496 | 3.3:+76885550 | MS.gene06650:CDS |
| CCTTTAATCAAGGGACTAAA+AGG | 0.382404 | 3.3:+76884219 | MS.gene06650:CDS |
| AGCTAAAAGTCCAACAAAAC+TGG | 0.385920 | 3.3:-76883363 | None:intergenic |
| CAAGCAATTGGAACAGCAAT+AGG | 0.388777 | 3.3:+76885048 | MS.gene06650:CDS |
| ATTGCCTTGATTCTTGGTGA+TGG | 0.390268 | 3.3:+76884396 | MS.gene06650:CDS |
| ATGGCATATGCTGAACAAAA+AGG | 0.393790 | 3.3:+76885395 | MS.gene06650:CDS |
| GCAGCAGAAACATTGAGATT+AGG | 0.397117 | 3.3:-76882546 | None:intergenic |
| GCTGTCATCCAACCAATTGC+AGG | 0.397989 | 3.3:-76883326 | None:intergenic |
| TTGCCTTGATTCTTGGTGAT+GGG | 0.403326 | 3.3:+76884397 | MS.gene06650:CDS |
| GTTGCTTCTGGTTTGATTTG+TGG | 0.403400 | 3.3:+76885441 | MS.gene06650:CDS |
| CTATTGCTGTTCCAATTGCT+TGG | 0.404380 | 3.3:-76885047 | None:intergenic |
| CCTATATGGTTGGCATGTAC+AGG | 0.406055 | 3.3:+76884691 | MS.gene06650:CDS |
| GAGGAGTCTCAATGGTTATA+AGG | 0.419961 | 3.3:+76884278 | MS.gene06650:CDS |
| TCATTGCTTCTAGGATCCAT+TGG | 0.423466 | 3.3:-76882339 | None:intergenic |
| TTCTGCAATGCTTATGGTGC+TGG | 0.424165 | 3.3:+76884820 | MS.gene06650:CDS |
| TCCCATCTAGGTAGAATGTT+CGG | 0.426310 | 3.3:+76885538 | MS.gene06650:intron |
| ATGAACATGGCCTATAACTA+CGG | 0.432565 | 3.3:+76884853 | MS.gene06650:CDS |
| AGGAAACAAATAACAGTTAG+AGG | 0.435356 | 3.3:+76882447 | MS.gene06650:CDS |
| TTTCTATATATAATAGCATA+TGG | 0.439609 | 3.3:-76885150 | None:intergenic |
| TGGATTCGTGAAATTCTTCT+CGG | 0.439741 | 3.3:+76883886 | MS.gene06650:CDS |
| TTCTTTCAGTGGTTCTTCAC+CGG | 0.441235 | 3.3:+76883926 | MS.gene06650:CDS |
| GTTTCGTGTTTATTCGAAGT+TGG | 0.443395 | 3.3:+76882577 | MS.gene06650:CDS |
| ACTGTTATTTGTTTCCTCCA+TGG | 0.443580 | 3.3:-76882441 | None:intergenic |
| CACAATTGCAAGCAATGATC+TGG | 0.443822 | 3.3:-76885210 | None:intergenic |
| TGATTTGTGGAGATGGATTG+TGG | 0.443828 | 3.3:+76885454 | MS.gene06650:CDS |
| CTACTTTCTGGTATACTAGC+AGG | 0.446822 | 3.3:-76884252 | None:intergenic |
| CATCATGTGGCCTTTAATCA+AGG | 0.447164 | 3.3:+76884209 | MS.gene06650:CDS |
| GTTATAGGCCATGTTCATAT+CGG | 0.447379 | 3.3:-76884848 | None:intergenic |
| ATCATTACTTCTTGGTGCTG+TGG | 0.449328 | 3.3:+76884176 | MS.gene06650:CDS |
| ATGCTTGTAAGCCAAGCAAT+TGG | 0.450560 | 3.3:+76885036 | MS.gene06650:CDS |
| CAACTTCTTTCCCAGGAAGC+AGG | 0.452937 | 3.3:+76883859 | MS.gene06650:intron |
| CCAACCAATTGCAGGCTCCT+TGG | 0.459143 | 3.3:-76883318 | None:intergenic |
| AAAAGTGATGGTGTAGTTGC+TGG | 0.461342 | 3.3:+76884913 | MS.gene06650:CDS |
| GATTACAACGATTGAGATGA+TGG | 0.461979 | 3.3:-76884728 | None:intergenic |
| CATGCTTGCAATCCAAAAGT+AGG | 0.463508 | 3.3:-76883977 | None:intergenic |
| TTCACCTGAGGGAACATCAA+TGG | 0.466222 | 3.3:-76884751 | None:intergenic |
| TCTGGTTTGATTTGTGGAGA+TGG | 0.470689 | 3.3:+76885447 | MS.gene06650:CDS |
| ATGAAACTCAATCTCACTAC+TGG | 0.473510 | 3.3:+76882516 | MS.gene06650:CDS |
| TCACCTGAGGGAACATCAAT+GGG | 0.475560 | 3.3:-76884750 | None:intergenic |
| CTTGGTGCTGTGGTTTCTTG+GGG | 0.477037 | 3.3:+76884186 | MS.gene06650:CDS |
| GATTTCAGTATGACTTATGT+TGG | 0.478042 | 3.3:+76884120 | MS.gene06650:CDS |
| AGTACCAAGGAGCCTGCAAT+TGG | 0.478104 | 3.3:+76883314 | MS.gene06650:CDS |
| AACCTTTAACAAAGCGAGAA+TGG | 0.486612 | 3.3:-76885490 | None:intergenic |
| TTGATGCATGATTTGAAGAC+TGG | 0.491943 | 3.3:+76884985 | MS.gene06650:CDS |
| AGCTTTGGTCCCCATTAGAA+AGG | 0.492724 | 3.3:+76883382 | MS.gene06650:CDS |
| GGAGCCTTGTAAATACCATC+TGG | 0.494006 | 3.3:-76885129 | None:intergenic |
| AATGGATTCCATACTCCTAA+AGG | 0.499986 | 3.3:+76883740 | MS.gene06650:CDS |
| GGTTCCACTTCCAATGGCTA+TGG | 0.502799 | 3.3:+76885305 | MS.gene06650:CDS |
| GTATTCTCTTGTCTAGTGAA+TGG | 0.504845 | 3.3:-76882636 | None:intergenic |
| ACTTATTGGGGTTGAATAGG+AGG | 0.507032 | 3.3:+76883246 | MS.gene06650:CDS |
| AGGAGGACTTATGAGCAAGC+AGG | 0.511921 | 3.3:+76883263 | MS.gene06650:CDS |
| AACAGCAGTAGCAGTTCCAC+TGG | 0.515210 | 3.3:-76883711 | None:intergenic |
| GCAGTTTGATTGTGTTTGCA+TGG | 0.516966 | 3.3:+76885376 | MS.gene06650:CDS |
| TTGTTTGGGCATTCTTTCAG+TGG | 0.523035 | 3.3:+76883915 | MS.gene06650:CDS |
| AAGCCCATCACCAAGAATCA+AGG | 0.526795 | 3.3:-76884400 | None:intergenic |
| CCTGTACATGCCAACCATAT+AGG | 0.529263 | 3.3:-76884691 | None:intergenic |
| AATCCCATTGATGTTCCCTC+AGG | 0.531314 | 3.3:+76884747 | MS.gene06650:CDS |
| TGGTTTCTTGGGGCATCATG+TGG | 0.532153 | 3.3:+76884196 | MS.gene06650:CDS |
| AAAGGCACAGCCATAGCCAT+TGG | 0.535040 | 3.3:-76885315 | None:intergenic |
| CATGTTGGCATGGATATTTG+TGG | 0.538954 | 3.3:-76884454 | None:intergenic |
| TCAAGGGACTAAAAGGAGAA+TGG | 0.544830 | 3.3:+76884226 | MS.gene06650:CDS |
| CATTGCTTGCAATTGTGTTG+TGG | 0.546205 | 3.3:+76885216 | MS.gene06650:CDS |
| CCAAGGAGCCTGCAATTGGT+TGG | 0.548985 | 3.3:+76883318 | MS.gene06650:CDS |
| AGTATGACTTATGTTGGAGC+GGG | 0.549855 | 3.3:+76884126 | MS.gene06650:CDS |
| TACTGCACAAGTTTGAATGA+TGG | 0.550626 | 3.3:-76882658 | None:intergenic |
| AAATCCAGATGGTATTTACA+AGG | 0.553711 | 3.3:+76885125 | MS.gene06650:CDS |
| GTACTACCAGGAGTATTCCC+TGG | 0.553929 | 3.3:-76883296 | None:intergenic |
| GTTGCTGGACTTGTAGGGTG+TGG | 0.557924 | 3.3:+76884928 | MS.gene06650:CDS |
| TGCTATAGCATCGCTGTAGG+AGG | 0.558415 | 3.3:+76882684 | MS.gene06650:CDS |
| TTCACCGGTGGAGATAATTG+TGG | 0.560104 | 3.3:+76883941 | MS.gene06650:CDS |
| TGAACATGGCCTATAACTAC+GGG | 0.561537 | 3.3:+76884854 | MS.gene06650:CDS |
| ACAGCCATAGCCATTGGAAG+TGG | 0.562685 | 3.3:-76885309 | None:intergenic |
| AGTAGCATGAGGAGTCTCAA+TGG | 0.563553 | 3.3:+76884270 | MS.gene06650:CDS |
| CAAGCAGGGATTGATACACC+AGG | 0.567204 | 3.3:+76883278 | MS.gene06650:CDS |
| AGAAAACATTCCTATATGGT+TGG | 0.567556 | 3.3:+76884681 | MS.gene06650:CDS |
| TTTGATGTTGGAAATCCAGA+TGG | 0.571652 | 3.3:+76885114 | MS.gene06650:CDS |
| TTTCAGTGGTTCTTCACCGG+TGG | 0.574136 | 3.3:+76883929 | MS.gene06650:CDS |
| TACTCCTAAAGGAGATGTGA+TGG | 0.575555 | 3.3:+76883751 | MS.gene06650:CDS |
| ATCACCAAGAATCAAGGCAA+TGG | 0.577080 | 3.3:-76884394 | None:intergenic |
| ACTGCCTACACACATATCAA+TGG | 0.578744 | 3.3:-76885358 | None:intergenic |
| GCAGGCTCCTTGGTACTACC+AGG | 0.579102 | 3.3:-76883308 | None:intergenic |
| ACAAAATACCACTTCACCTG+AGG | 0.579884 | 3.3:-76884763 | None:intergenic |
| TGATGTTCCCTCAGGTGAAG+TGG | 0.583774 | 3.3:+76884755 | MS.gene06650:CDS |
| GATACACCAGGGAATACTCC+TGG | 0.584209 | 3.3:+76883290 | MS.gene06650:CDS |
| GAGATGGGTTCCACTTCCAA+TGG | 0.587735 | 3.3:+76885299 | MS.gene06650:CDS |
| CTATATGGTTGGCATGTACA+GGG | 0.588281 | 3.3:+76884692 | MS.gene06650:CDS |
| AACAAAGCGAGAATGGATGA+AGG | 0.588783 | 3.3:-76885483 | None:intergenic |
| GCATTGCAGAAGCCGAGCGA+GGG | 0.592829 | 3.3:-76884808 | None:intergenic |
| ATCAAACCAGAAGCAACTGC+AGG | 0.595717 | 3.3:-76885435 | None:intergenic |
| GGAGGACTTATGAGCAAGCA+GGG | 0.597449 | 3.3:+76883264 | MS.gene06650:CDS |
| GGAGGAATCTGTGAATCCAA+TGG | 0.600474 | 3.3:+76882323 | MS.gene06650:CDS |
| ATATTACTACCTTTCTAATG+GGG | 0.600914 | 3.3:-76883391 | None:intergenic |
| CAAAATACCACTTCACCTGA+GGG | 0.601804 | 3.3:-76884762 | None:intergenic |
| CTGAGATCATCAAGAGGCAA+CGG | 0.603310 | 3.3:-76884637 | None:intergenic |
| GTGTAGTTGCTGGACTTGTA+GGG | 0.605151 | 3.3:+76884923 | MS.gene06650:CDS |
| TACTTTCTGGTATACTAGCA+GGG | 0.607935 | 3.3:-76884251 | None:intergenic |
| ATCATGTGGCCTTTAATCAA+GGG | 0.610873 | 3.3:+76884210 | MS.gene06650:CDS |
| CAGTATGACTTATGTTGGAG+CGG | 0.615065 | 3.3:+76884125 | MS.gene06650:CDS |
| TGCTATTATATATAGAAACA+TGG | 0.616203 | 3.3:+76885155 | MS.gene06650:CDS |
| AATCATCATCACATTGAAGA+GGG | 0.616737 | 3.3:+76882381 | MS.gene06650:CDS |
| AAATCCACAATTATCTCCAC+CGG | 0.617289 | 3.3:-76883945 | None:intergenic |
| TTTGCCATTGATATGTGTGT+AGG | 0.620759 | 3.3:+76885354 | MS.gene06650:CDS |
| TGGATTAACCGATATGAACA+TGG | 0.621595 | 3.3:+76884840 | MS.gene06650:CDS |
| GAATCATCATCACATTGAAG+AGG | 0.626811 | 3.3:+76882380 | MS.gene06650:CDS |
| TCACATTGAAGAGGGTCAAG+TGG | 0.632388 | 3.3:+76882389 | MS.gene06650:CDS |
| AGCATTGCAGAAGCCGAGCG+AGG | 0.633923 | 3.3:-76884809 | None:intergenic |
| GTGGCGAAGTCAGAGTGAGA+TGG | 0.637116 | 3.3:-76885008 | None:intergenic |
| GCTTGCTATAGCATCGCTGT+AGG | 0.647898 | 3.3:+76882681 | MS.gene06650:CDS |
| GATTGGTTCAATCACAGTGG+AGG | 0.656647 | 3.3:+76882305 | MS.gene06650:CDS |
| ACAGCAGTAGCAGTTCCACT+GGG | 0.662632 | 3.3:-76883710 | None:intergenic |
| TTTCGTCTGAGATCATCAAG+AGG | 0.663470 | 3.3:-76884643 | None:intergenic |
| GTATACCAGAAAGTAGCATG+AGG | 0.678156 | 3.3:+76884259 | MS.gene06650:CDS |
| GAATACTCCTGGTAGTACCA+AGG | 0.678175 | 3.3:+76883301 | MS.gene06650:CDS |
| TACAAATTAACTTATCCCAG+TGG | 0.686829 | 3.3:+76883695 | MS.gene06650:CDS |
| TGGCTTACAAGCATCGAACG+TGG | 0.698607 | 3.3:-76885027 | None:intergenic |
| TGAATAGAATAGCACCATGG+AGG | 0.711294 | 3.3:+76882427 | MS.gene06650:CDS |
| AAGCAGGGATTGATACACCA+GGG | 0.727787 | 3.3:+76883279 | MS.gene06650:CDS |
| GATGATTGGTTCAATCACAG+TGG | 0.734769 | 3.3:+76882302 | None:intergenic |
| AGTTGAATAGAATAGCACCA+TGG | 0.738039 | 3.3:+76882424 | MS.gene06650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATCTATTTATCCAAAA+AGG | - | chr3.3:76882941-76882960 | None:intergenic | 15.0% |
| !! | CAAAAAAAGTTAAAAAGAAA+AGG | - | chr3.3:76883797-76883816 | None:intergenic | 15.0% |
| !! | TTAATCTATTTATCCAAAAA+GGG | - | chr3.3:76882940-76882959 | None:intergenic | 15.0% |
| !! | TTTCTATATATAATAGCATA+TGG | - | chr3.3:76885153-76885172 | None:intergenic | 15.0% |
| !!! | AAAGAAATATTAGATTTTAC+AGG | - | chr3.3:76884590-76884609 | None:intergenic | 15.0% |
| !!! | CTTTTCTTTTTAACTTTTTT+TGG | + | chr3.3:76883795-76883814 | MS.gene06650:intron | 15.0% |
| !! | AAATATTACTACCTTTCTAA+TGG | - | chr3.3:76883396-76883415 | None:intergenic | 20.0% |
| !! | AATATTACTACCTTTCTAAT+GGG | - | chr3.3:76883395-76883414 | None:intergenic | 20.0% |
| !! | GAGATAAAATAAAGTCAAAT+TGG | + | chr3.3:76882994-76883013 | MS.gene06650:intron | 20.0% |
| !! | GATTAATTGAGCTTATTTAT+CGG | - | chr3.3:76883130-76883149 | None:intergenic | 20.0% |
| !! | GTTAATTTATCATTACTTCT+TGG | + | chr3.3:76884168-76884187 | MS.gene06650:CDS | 20.0% |
| !! | TGCTATTATATATAGAAACA+TGG | + | chr3.3:76885155-76885174 | MS.gene06650:CDS | 20.0% |
| !!! | ATTAATTTGTTTTTCCAAAC+AGG | - | chr3.3:76882771-76882790 | None:intergenic | 20.0% |
| !!! | TAATCATTTTACCTTGTATT+GGG | + | chr3.3:76882744-76882763 | MS.gene06650:intron | 20.0% |
| !!! | TATTTTCATAAGTTATCTTG+TGG | + | chr3.3:76882866-76882885 | MS.gene06650:intron | 20.0% |
| ! | AAGTTAAAAAGAAAAGGCAA+AGG | - | chr3.3:76883791-76883810 | None:intergenic | 25.0% |
| ! | AGTTGTAGAACAAAAAACAA+AGG | - | chr3.3:76884021-76884040 | None:intergenic | 25.0% |
| ! | ATATTACTACCTTTCTAATG+GGG | - | chr3.3:76883394-76883413 | None:intergenic | 25.0% |
| ! | ATCCAATCCAAATAGATATT+TGG | + | chr3.3:76883147-76883166 | MS.gene06650:intron | 25.0% |
| ! | CAAATACTATAGATTCGATA+AGG | - | chr3.3:76884329-76884348 | None:intergenic | 25.0% |
| ! | TAAAAAAGGAAGAATGTGAT+AGG | - | chr3.3:76885087-76885106 | None:intergenic | 25.0% |
| ! | TGTTACACCAAATATCTATT+TGG | - | chr3.3:76883157-76883176 | None:intergenic | 25.0% |
| ! | TTCAAATGTTGCTAAAGAAT+TGG | + | chr3.3:76883481-76883500 | MS.gene06650:intron | 25.0% |
| !! | AAGTTTAAATCCTTTTAGCA+TGG | + | chr3.3:76883558-76883577 | MS.gene06650:intron | 25.0% |
| !! | AGTTTAATCTTGTTATCTCA+AGG | + | chr3.3:76883531-76883550 | MS.gene06650:intron | 25.0% |
| !! | ATATAGAAACATGGCAATTT+TGG | + | chr3.3:76885164-76885183 | MS.gene06650:CDS | 25.0% |
| !! | CTAATCATTTTACCTTGTAT+TGG | + | chr3.3:76882743-76882762 | MS.gene06650:intron | 25.0% |
| !! | GTTTAATCTTGTTATCTCAA+GGG | + | chr3.3:76883532-76883551 | MS.gene06650:intron | 25.0% |
| !! | TATAGAAACATGGCAATTTT+GGG | + | chr3.3:76885165-76885184 | MS.gene06650:CDS | 25.0% |
| !! | TTTATCTCTTGCTATAGAAA+TGG | - | chr3.3:76882982-76883001 | None:intergenic | 25.0% |
| !! | TTTGTTCAATTTCCTACTTT+TGG | + | chr3.3:76883965-76883984 | MS.gene06650:CDS | 25.0% |
| !!! | ATTTGCTATAGTAGCTAATT+TGG | + | chr3.3:76885248-76885267 | MS.gene06650:CDS | 25.0% |
| !!! | CTAATAGCTAGTCTTATAAT+TGG | + | chr3.3:76882471-76882490 | MS.gene06650:CDS | 25.0% |
| AAATCCAGATGGTATTTACA+AGG | + | chr3.3:76885125-76885144 | MS.gene06650:CDS | 30.0% | |
| AACACCATTCAAGTCAAATT+GGG | - | chr3.3:76883633-76883652 | None:intergenic | 30.0% | |
| AATCATCATCACATTGAAGA+GGG | + | chr3.3:76882381-76882400 | MS.gene06650:CDS | 30.0% | |
| AGAAAACATTCCTATATGGT+TGG | + | chr3.3:76884681-76884700 | MS.gene06650:CDS | 30.0% | |
| AGGAAACAAATAACAGTTAG+AGG | + | chr3.3:76882447-76882466 | MS.gene06650:CDS | 30.0% | |
| CAAGAGAAAACATTCCTATA+TGG | + | chr3.3:76884677-76884696 | MS.gene06650:CDS | 30.0% | |
| CACCAAATATCTATTTGGAT+TGG | - | chr3.3:76883152-76883171 | None:intergenic | 30.0% | |
| CTAAGTTTAGCTAAAACTGA+AGG | - | chr3.3:76884305-76884324 | None:intergenic | 30.0% | |
| GATTTCAGTATGACTTATGT+TGG | + | chr3.3:76884120-76884139 | MS.gene06650:CDS | 30.0% | |
| GTGCAAAAATATACGCAAAA+AGG | - | chr3.3:76884789-76884808 | None:intergenic | 30.0% | |
| GTGCTTTAATCAGTAACAAT+TGG | - | chr3.3:76884077-76884096 | None:intergenic | 30.0% | |
| TACAAATTAACTTATCCCAG+TGG | + | chr3.3:76883695-76883714 | MS.gene06650:CDS | 30.0% | |
| TGAACTTGTGTGATAATTGT+AGG | + | chr3.3:76883209-76883228 | MS.gene06650:intron | 30.0% | |
| TGCTAAAGAATTGGTGTATA+AGG | + | chr3.3:76883490-76883509 | MS.gene06650:intron | 30.0% | |
| ! | CATCAAAAGCCTTGTAAAAA+AGG | - | chr3.3:76885101-76885120 | None:intergenic | 30.0% |
| ! | TATAATTTTTCCTGTCCTTG+AGG | + | chr3.3:76884516-76884535 | MS.gene06650:intron | 30.0% |
| ! | TTTTACAAGGCTTTTGATGT+TGG | + | chr3.3:76885102-76885121 | MS.gene06650:CDS | 30.0% |
| !! | AAGATCCTTCTTTTTCATGT+TGG | - | chr3.3:76884472-76884491 | None:intergenic | 30.0% |
| !! | GTTTTGGATCTTACTTATTG+GGG | + | chr3.3:76883234-76883253 | MS.gene06650:CDS | 30.0% |
| !!! | CACATTCTTCCTTTTTTACA+AGG | + | chr3.3:76885089-76885108 | MS.gene06650:CDS | 30.0% |
| !!! | GGTTTTGGATCTTACTTATT+GGG | + | chr3.3:76883233-76883252 | MS.gene06650:CDS | 30.0% |
| !!! | TGGTTTTGGATCTTACTTAT+TGG | + | chr3.3:76883232-76883251 | MS.gene06650:CDS | 30.0% |
| !!! | TTTTGTTGGACTTTTAGCTT+TGG | + | chr3.3:76883367-76883386 | MS.gene06650:CDS | 30.0% |
| AAATCCACAATTATCTCCAC+CGG | - | chr3.3:76883948-76883967 | None:intergenic | 35.0% | |
| AACCTTTAACAAAGCGAGAA+TGG | - | chr3.3:76885493-76885512 | None:intergenic | 35.0% | |
| AAGAAGCTCATACATATTGG+GGG | - | chr3.3:76885519-76885538 | None:intergenic | 35.0% | |
| AAGTAGCCACCAACTAAAAA+AGG | - | chr3.3:76885336-76885355 | None:intergenic | 35.0% | |
| ACACCATTCAAGTCAAATTG+GGG | - | chr3.3:76883632-76883651 | None:intergenic | 35.0% | |
| ACTTGTGTGATAATTGTAGG+TGG | + | chr3.3:76883212-76883231 | MS.gene06650:intron | 35.0% | |
| AGAATGTTCGGATTTGGATT+TGG | + | chr3.3:76885550-76885569 | MS.gene06650:CDS | 35.0% | |
| AGCTAAAAGTCCAACAAAAC+TGG | - | chr3.3:76883366-76883385 | None:intergenic | 35.0% | |
| AGTTGAATAGAATAGCACCA+TGG | + | chr3.3:76882424-76882443 | MS.gene06650:CDS | 35.0% | |
| ATCATGTGGCCTTTAATCAA+GGG | + | chr3.3:76884210-76884229 | MS.gene06650:CDS | 35.0% | |
| ATCTTGGCCCCAAAAAAATT+GGG | + | chr3.3:76885277-76885296 | MS.gene06650:CDS | 35.0% | |
| ATGAAACTCAATCTCACTAC+TGG | + | chr3.3:76882516-76882535 | MS.gene06650:CDS | 35.0% | |
| ATGAACATGGCCTATAACTA+CGG | + | chr3.3:76884853-76884872 | MS.gene06650:CDS | 35.0% | |
| ATGGCATATGCTGAACAAAA+AGG | + | chr3.3:76885395-76885414 | MS.gene06650:CDS | 35.0% | |
| ATTCAAGTCAAATTGGGGAA+GGG | - | chr3.3:76883627-76883646 | None:intergenic | 35.0% | |
| ATTTCCATTGCCTTGATTCT+TGG | + | chr3.3:76884390-76884409 | MS.gene06650:CDS | 35.0% | |
| CAACACCATTCAAGTCAAAT+TGG | - | chr3.3:76883634-76883653 | None:intergenic | 35.0% | |
| CAGCAGAAACATTGAGATTA+GGG | - | chr3.3:76882548-76882567 | None:intergenic | 35.0% | |
| CATTCTACAACCATGCTAAA+AGG | - | chr3.3:76883571-76883590 | None:intergenic | 35.0% | |
| CCTTTAATCAAGGGACTAAA+AGG | + | chr3.3:76884219-76884238 | MS.gene06650:CDS | 35.0% | |
| CTTACTTATTGGGGTTGAAT+AGG | + | chr3.3:76883243-76883262 | MS.gene06650:CDS | 35.0% | |
| CTTTCTTCTTCATTGCTTCT+AGG | - | chr3.3:76882351-76882370 | None:intergenic | 35.0% | |
| GAAGAAGCTCATACATATTG+GGG | - | chr3.3:76885520-76885539 | None:intergenic | 35.0% | |
| GAATCATCATCACATTGAAG+AGG | + | chr3.3:76882380-76882399 | MS.gene06650:CDS | 35.0% | |
| GAATCTGAATGAAATCCTCA+AGG | - | chr3.3:76884534-76884553 | None:intergenic | 35.0% | |
| GATTACAACGATTGAGATGA+TGG | - | chr3.3:76884731-76884750 | None:intergenic | 35.0% | |
| GCTAATTTGGTAAGAGATCT+TGG | + | chr3.3:76885261-76885280 | MS.gene06650:CDS | 35.0% | |
| GCTACTGCTGTTCTTATTAA+TGG | + | chr3.3:76883722-76883741 | MS.gene06650:CDS | 35.0% | |
| GGAAATAAAAACCTGTAGCA+AGG | - | chr3.3:76884376-76884395 | None:intergenic | 35.0% | |
| GGAAGAAGCTCATACATATT+GGG | - | chr3.3:76885521-76885540 | None:intergenic | 35.0% | |
| GTATTCTCTTGTCTAGTGAA+TGG | - | chr3.3:76882639-76882658 | None:intergenic | 35.0% | |
| GTTATAGGCCATGTTCATAT+CGG | - | chr3.3:76884851-76884870 | None:intergenic | 35.0% | |
| GTTTCGTGTTTATTCGAAGT+TGG | + | chr3.3:76882577-76882596 | MS.gene06650:CDS | 35.0% | |
| TACTGCACAAGTTTGAATGA+TGG | - | chr3.3:76882661-76882680 | None:intergenic | 35.0% | |
| TCAAATTGTATCCTTGCTAC+AGG | + | chr3.3:76884362-76884381 | MS.gene06650:intron | 35.0% | |
| TGGATTAACCGATATGAACA+TGG | + | chr3.3:76884840-76884859 | MS.gene06650:CDS | 35.0% | |
| TGGATTCGTGAAATTCTTCT+CGG | + | chr3.3:76883886-76883905 | MS.gene06650:CDS | 35.0% | |
| TTGATGCATGATTTGAAGAC+TGG | + | chr3.3:76884985-76885004 | MS.gene06650:CDS | 35.0% | |
| TTTGATGTTGGAAATCCAGA+TGG | + | chr3.3:76885114-76885133 | MS.gene06650:CDS | 35.0% | |
| TTTGCCATTGATATGTGTGT+AGG | + | chr3.3:76885354-76885373 | MS.gene06650:CDS | 35.0% | |
| ! | AATGGATTCCATACTCCTAA+AGG | + | chr3.3:76883740-76883759 | MS.gene06650:CDS | 35.0% |
| ! | ACATTGAATTGGACCCTTTT+TGG | + | chr3.3:76882924-76882943 | MS.gene06650:intron | 35.0% |
| ! | ACTGTTATTTGTTTCCTCCA+TGG | - | chr3.3:76882444-76882463 | None:intergenic | 35.0% |
| ! | ATCCATTCTCGCTTTGTTAA+AGG | + | chr3.3:76885488-76885507 | MS.gene06650:CDS | 35.0% |
| ! | CCTTTTAGTCCCTTGATTAA+AGG | - | chr3.3:76884222-76884241 | None:intergenic | 35.0% |
| ! | GTGATAATTGTAGGTGGTTT+TGG | + | chr3.3:76883218-76883237 | MS.gene06650:intron | 35.0% |
| ! | GTTGTAAAAGTTGTCGACTA+TGG | + | chr3.3:76884042-76884061 | MS.gene06650:intron | 35.0% |
| ! | TACTTTCTGGTATACTAGCA+GGG | - | chr3.3:76884254-76884273 | None:intergenic | 35.0% |
| !! | CTATTTGTGACCAGTTTTGT+TGG | + | chr3.3:76883353-76883372 | MS.gene06650:CDS | 35.0% |
| !!! | AACCCATCTCCCAATTTTTT+TGG | - | chr3.3:76885289-76885308 | None:intergenic | 35.0% |
| !!! | ACCCATCTCCCAATTTTTTT+GGG | - | chr3.3:76885288-76885307 | None:intergenic | 35.0% |
| AACAAAGCGAGAATGGATGA+AGG | - | chr3.3:76885486-76885505 | None:intergenic | 40.0% | |
| ACAAAATACCACTTCACCTG+AGG | - | chr3.3:76884766-76884785 | None:intergenic | 40.0% | |
| ACTAGTTCAACTTCTTTCCC+AGG | + | chr3.3:76883852-76883871 | MS.gene06650:intron | 40.0% | |
| ACTGCCTACACACATATCAA+TGG | - | chr3.3:76885361-76885380 | None:intergenic | 40.0% | |
| ACTTATTGGGGTTGAATAGG+AGG | + | chr3.3:76883246-76883265 | MS.gene06650:CDS | 40.0% | |
| AGTATGACTTATGTTGGAGC+GGG | + | chr3.3:76884126-76884145 | MS.gene06650:CDS | 40.0% | |
| ATCACCAAGAATCAAGGCAA+TGG | - | chr3.3:76884397-76884416 | None:intergenic | 40.0% | |
| ATCCGAACATTCTACCTAGA+TGG | - | chr3.3:76885543-76885562 | None:intergenic | 40.0% | |
| ATGCTGAACAAAAAGGAAGC+TGG | + | chr3.3:76885402-76885421 | MS.gene06650:CDS | 40.0% | |
| ATGCTTGTAAGCCAAGCAAT+TGG | + | chr3.3:76885036-76885055 | MS.gene06650:CDS | 40.0% | |
| ATTGCCTTGATTCTTGGTGA+TGG | + | chr3.3:76884396-76884415 | MS.gene06650:CDS | 40.0% | |
| ATTTCCATAAGCTCACTCTC+TGG | - | chr3.3:76883056-76883075 | None:intergenic | 40.0% | |
| CAAAATACCACTTCACCTGA+GGG | - | chr3.3:76884765-76884784 | None:intergenic | 40.0% | |
| CAAGCAATTGGAACAGCAAT+AGG | + | chr3.3:76885048-76885067 | MS.gene06650:CDS | 40.0% | |
| CACAATTGCAAGCAATGATC+TGG | - | chr3.3:76885213-76885232 | None:intergenic | 40.0% | |
| CAGTATGACTTATGTTGGAG+CGG | + | chr3.3:76884125-76884144 | MS.gene06650:CDS | 40.0% | |
| CATCATGTGGCCTTTAATCA+AGG | + | chr3.3:76884209-76884228 | MS.gene06650:CDS | 40.0% | |
| CATGCTTGCAATCCAAAAGT+AGG | - | chr3.3:76883980-76883999 | None:intergenic | 40.0% | |
| CATGTTGGCATGGATATTTG+TGG | - | chr3.3:76884457-76884476 | None:intergenic | 40.0% | |
| CATTCAAGTCAAATTGGGGA+AGG | - | chr3.3:76883628-76883647 | None:intergenic | 40.0% | |
| CATTGCTTGCAATTGTGTTG+TGG | + | chr3.3:76885216-76885235 | MS.gene06650:CDS | 40.0% | |
| CCATGCCAACATGAAAAAGA+AGG | + | chr3.3:76884464-76884483 | MS.gene06650:CDS | 40.0% | |
| CCCCAAAAAAATTGGGAGAT+GGG | + | chr3.3:76885284-76885303 | MS.gene06650:CDS | 40.0% | |
| CTAGGTAGAATGTTCGGATT+TGG | + | chr3.3:76885544-76885563 | MS.gene06650:intron | 40.0% | |
| CTATATGGTTGGCATGTACA+GGG | + | chr3.3:76884692-76884711 | MS.gene06650:CDS | 40.0% | |
| GAGGAGTCTCAATGGTTATA+AGG | + | chr3.3:76884278-76884297 | MS.gene06650:CDS | 40.0% | |
| GATCTTGGCCCCAAAAAAAT+TGG | + | chr3.3:76885276-76885295 | MS.gene06650:CDS | 40.0% | |
| GCAGCAGAAACATTGAGATT+AGG | - | chr3.3:76882549-76882568 | None:intergenic | 40.0% | |
| GCAGCTTACAGACATTGAAT+TGG | + | chr3.3:76882913-76882932 | MS.gene06650:intron | 40.0% | |
| GCAGTTTGATTGTGTTTGCA+TGG | + | chr3.3:76885376-76885395 | MS.gene06650:CDS | 40.0% | |
| GGGAAGAAGCTCATACATAT+TGG | - | chr3.3:76885522-76885541 | None:intergenic | 40.0% | |
| GTATACCAGAAAGTAGCATG+AGG | + | chr3.3:76884259-76884278 | MS.gene06650:CDS | 40.0% | |
| TACTCCTAAAGGAGATGTGA+TGG | + | chr3.3:76883751-76883770 | MS.gene06650:CDS | 40.0% | |
| TCAAGGGACTAAAAGGAGAA+TGG | + | chr3.3:76884226-76884245 | MS.gene06650:CDS | 40.0% | |
| TCCCATCTAGGTAGAATGTT+CGG | + | chr3.3:76885538-76885557 | MS.gene06650:intron | 40.0% | |
| TCCGAACATTCTACCTAGAT+GGG | - | chr3.3:76885542-76885561 | None:intergenic | 40.0% | |
| TGAACATGGCCTATAACTAC+GGG | + | chr3.3:76884854-76884873 | MS.gene06650:CDS | 40.0% | |
| TGAATAGAATAGCACCATGG+AGG | + | chr3.3:76882427-76882446 | MS.gene06650:CDS | 40.0% | |
| TGAATGAAATCCTCAAGGAC+AGG | - | chr3.3:76884529-76884548 | None:intergenic | 40.0% | |
| TTCTTTCAGTGGTTCTTCAC+CGG | + | chr3.3:76883926-76883945 | MS.gene06650:CDS | 40.0% | |
| TTGTTTGGGCATTCTTTCAG+TGG | + | chr3.3:76883915-76883934 | MS.gene06650:CDS | 40.0% | |
| TTTCCATAAGCTCACTCTCT+GGG | - | chr3.3:76883055-76883074 | None:intergenic | 40.0% | |
| ! | AAAAGTGATGGTGTAGTTGC+TGG | + | chr3.3:76884913-76884932 | MS.gene06650:CDS | 40.0% |
| ! | AATGTTTCTGCTGCTCTACT+TGG | + | chr3.3:76882555-76882574 | MS.gene06650:CDS | 40.0% |
| ! | AGCTACTTTCCCGTAGTTAT+AGG | - | chr3.3:76884866-76884885 | None:intergenic | 40.0% |
| ! | AGGCAAAGGAAGTACATACT+TGG | - | chr3.3:76883777-76883796 | None:intergenic | 40.0% |
| ! | CTACTTTCTGGTATACTAGC+AGG | - | chr3.3:76884255-76884274 | None:intergenic | 40.0% |
| ! | CTATTGCTGTTCCAATTGCT+TGG | - | chr3.3:76885050-76885069 | None:intergenic | 40.0% |
| ! | TCACATCTCCTTTAGGAGTA+TGG | - | chr3.3:76883751-76883770 | None:intergenic | 40.0% |
| ! | TTGCCTTGATTCTTGGTGAT+GGG | + | chr3.3:76884397-76884416 | MS.gene06650:CDS | 40.0% |
| ! | TTTCGTCTGAGATCATCAAG+AGG | - | chr3.3:76884646-76884665 | None:intergenic | 40.0% |
| !! | AAACATGGCAATTTTGGGTG+TGG | + | chr3.3:76885170-76885189 | MS.gene06650:CDS | 40.0% |
| !! | ATCATTACTTCTTGGTGCTG+TGG | + | chr3.3:76884176-76884195 | MS.gene06650:CDS | 40.0% |
| !! | CCTTCTTTTTCATGTTGGCA+TGG | - | chr3.3:76884467-76884486 | None:intergenic | 40.0% |
| !! | CTACTTTTGGATTGCAAGCA+TGG | + | chr3.3:76883978-76883997 | MS.gene06650:CDS | 40.0% |
| !! | CTTCCCCAATTTGACTTGAA+TGG | + | chr3.3:76883626-76883645 | MS.gene06650:intron | 40.0% |
| !! | GTTGCTTCTGGTTTGATTTG+TGG | + | chr3.3:76885441-76885460 | MS.gene06650:CDS | 40.0% |
| !! | TATATTTTTGCACCCTCGCT+CGG | + | chr3.3:76884796-76884815 | MS.gene06650:CDS | 40.0% |
| !! | TCATTGCTTCTAGGATCCAT+TGG | - | chr3.3:76882342-76882361 | None:intergenic | 40.0% |
| !! | TCTGGTTTGATTTGTGGAGA+TGG | + | chr3.3:76885447-76885466 | MS.gene06650:CDS | 40.0% |
| !! | TGATTTGTGGAGATGGATTG+TGG | + | chr3.3:76885454-76885473 | MS.gene06650:CDS | 40.0% |
| !!! | ACCATCACTTTTTCCAGCTA+AGG | - | chr3.3:76884905-76884924 | None:intergenic | 40.0% |
| !!! | ATCACTTTTTCCAGCTAAGG+CGG | - | chr3.3:76884902-76884921 | None:intergenic | 40.0% |
| !!! | ATGGCTGTGCCTTTTTTAGT+TGG | + | chr3.3:76885324-76885343 | MS.gene06650:CDS | 40.0% |
| !!! | CCCATCTCCCAATTTTTTTG+GGG | - | chr3.3:76885287-76885306 | None:intergenic | 40.0% |
| !!! | CTTCTCGGCAAGTTTTGTTT+GGG | + | chr3.3:76883901-76883920 | MS.gene06650:CDS | 40.0% |
| !!! | TCTTCTCGGCAAGTTTTGTT+TGG | + | chr3.3:76883900-76883919 | MS.gene06650:CDS | 40.0% |
| AAGCACTTGTGAGGCTGTTT+GGG | - | chr3.3:76883104-76883123 | None:intergenic | 45.0% | |
| AAGCAGGGATTGATACACCA+GGG | + | chr3.3:76883279-76883298 | MS.gene06650:CDS | 45.0% | |
| AAGCCCATCACCAAGAATCA+AGG | - | chr3.3:76884403-76884422 | None:intergenic | 45.0% | |
| AATCCATGAACCTGCTTCCT+GGG | - | chr3.3:76883872-76883891 | None:intergenic | 45.0% | |
| AATCCCATTGATGTTCCCTC+AGG | + | chr3.3:76884747-76884766 | MS.gene06650:CDS | 45.0% | |
| ACCTTGTATTGGGTCCTGTT+TGG | + | chr3.3:76882754-76882773 | MS.gene06650:intron | 45.0% | |
| AGTAGCATGAGGAGTCTCAA+TGG | + | chr3.3:76884270-76884289 | MS.gene06650:CDS | 45.0% | |
| ATCAAACCAGAAGCAACTGC+AGG | - | chr3.3:76885438-76885457 | None:intergenic | 45.0% | |
| ATGATTCCTGCAGTTGCTTC+TGG | + | chr3.3:76885429-76885448 | MS.gene06650:CDS | 45.0% | |
| CCTATATGGTTGGCATGTAC+AGG | + | chr3.3:76884691-76884710 | MS.gene06650:CDS | 45.0% | |
| CCTGTACATGCCAACCATAT+AGG | - | chr3.3:76884694-76884713 | None:intergenic | 45.0% | |
| CTGAGATCATCAAGAGGCAA+CGG | - | chr3.3:76884640-76884659 | None:intergenic | 45.0% | |
| GAATACTCCTGGTAGTACCA+AGG | + | chr3.3:76883301-76883320 | MS.gene06650:CDS | 45.0% | |
| GCCCCAAAAAAATTGGGAGA+TGG | + | chr3.3:76885283-76885302 | MS.gene06650:CDS | 45.0% | |
| GCCTTAGCTGGAAAAAGTGA+TGG | + | chr3.3:76884901-76884920 | MS.gene06650:CDS | 45.0% | |
| GGAGGAATCTGTGAATCCAA+TGG | + | chr3.3:76882323-76882342 | MS.gene06650:CDS | 45.0% | |
| GTATGAGCTTCTTCCCATCT+AGG | + | chr3.3:76885526-76885545 | MS.gene06650:intron | 45.0% | |
| GTGTAGTTGCTGGACTTGTA+GGG | + | chr3.3:76884923-76884942 | MS.gene06650:CDS | 45.0% | |
| TAAGCACTTGTGAGGCTGTT+TGG | - | chr3.3:76883105-76883124 | None:intergenic | 45.0% | |
| TATCCCAGAGAGTGAGCTTA+TGG | + | chr3.3:76883049-76883068 | MS.gene06650:intron | 45.0% | |
| TATCGGCATAAGCACTTGTG+AGG | - | chr3.3:76883113-76883132 | None:intergenic | 45.0% | |
| TCACATTGAAGAGGGTCAAG+TGG | + | chr3.3:76882389-76882408 | MS.gene06650:CDS | 45.0% | |
| TCACCTGAGGGAACATCAAT+GGG | - | chr3.3:76884753-76884772 | None:intergenic | 45.0% | |
| TCCAAACAGGACCCAATACA+AGG | - | chr3.3:76882758-76882777 | None:intergenic | 45.0% | |
| TTCACCGGTGGAGATAATTG+TGG | + | chr3.3:76883941-76883960 | MS.gene06650:CDS | 45.0% | |
| TTCACCTGAGGGAACATCAA+TGG | - | chr3.3:76884754-76884773 | None:intergenic | 45.0% | |
| TTCTGCAATGCTTATGGTGC+TGG | + | chr3.3:76884820-76884839 | MS.gene06650:CDS | 45.0% | |
| TTGGCCATCACATCTCCTTT+AGG | - | chr3.3:76883758-76883777 | None:intergenic | 45.0% | |
| ! | AGCTTTGGTCCCCATTAGAA+AGG | + | chr3.3:76883382-76883401 | MS.gene06650:CDS | 45.0% |
| ! | GATTGGTTCAATCACAGTGG+AGG | + | chr3.3:76882305-76882324 | MS.gene06650:CDS | 45.0% |
| ! | GGAGCCTTGTAAATACCATC+TGG | - | chr3.3:76885132-76885151 | None:intergenic | 45.0% |
| !! | AGACTCCTCATGCTACTTTC+TGG | - | chr3.3:76884267-76884286 | None:intergenic | 45.0% |
| !! | ATGGCAATTTTGGGTGTGGA+AGG | + | chr3.3:76885174-76885193 | MS.gene06650:CDS | 45.0% |
| !! | TCTTGGTGCTGTGGTTTCTT+GGG | + | chr3.3:76884185-76884204 | MS.gene06650:CDS | 45.0% |
| !! | TTCTTGGTGCTGTGGTTTCT+TGG | + | chr3.3:76884184-76884203 | MS.gene06650:CDS | 45.0% |
| !!! | GCTGTGCCTTTTTTAGTTGG+TGG | + | chr3.3:76885327-76885346 | MS.gene06650:CDS | 45.0% |
| !!! | TTTAATTTAATGAATTTTTT+AGG | + | chr3.3:76883822-76883841 | MS.gene06650:intron | 5.0% |
| AACAGCAGTAGCAGTTCCAC+TGG | - | chr3.3:76883714-76883733 | None:intergenic | 50.0% | |
| ACAGCAGTAGCAGTTCCACT+GGG | - | chr3.3:76883713-76883732 | None:intergenic | 50.0% | |
| ACAGCCATAGCCATTGGAAG+TGG | - | chr3.3:76885312-76885331 | None:intergenic | 50.0% | |
| AGGAGGACTTATGAGCAAGC+AGG | + | chr3.3:76883263-76883282 | MS.gene06650:CDS | 50.0% | |
| AGTACCAAGGAGCCTGCAAT+TGG | + | chr3.3:76883314-76883333 | MS.gene06650:CDS | 50.0% | |
| CAACTTCTTTCCCAGGAAGC+AGG | + | chr3.3:76883859-76883878 | MS.gene06650:intron | 50.0% | |
| CAAGCAGGGATTGATACACC+AGG | + | chr3.3:76883278-76883297 | MS.gene06650:CDS | 50.0% | |
| CATCAAGAGGCAACGGTTTC+TGG | - | chr3.3:76884633-76884652 | None:intergenic | 50.0% | |
| CTCGGCTTCTGCAATGCTTA+TGG | + | chr3.3:76884814-76884833 | MS.gene06650:CDS | 50.0% | |
| GAATCCATGAACCTGCTTCC+TGG | - | chr3.3:76883873-76883892 | None:intergenic | 50.0% | |
| GATACACCAGGGAATACTCC+TGG | + | chr3.3:76883290-76883309 | MS.gene06650:CDS | 50.0% | |
| GCTGTCATCCAACCAATTGC+AGG | - | chr3.3:76883329-76883348 | None:intergenic | 50.0% | |
| GGAGGACTTATGAGCAAGCA+GGG | + | chr3.3:76883264-76883283 | MS.gene06650:CDS | 50.0% | |
| GGTGTAGTTGCTGGACTTGT+AGG | + | chr3.3:76884922-76884941 | MS.gene06650:CDS | 50.0% | |
| GGTTCCACTTCCAATGGCTA+TGG | + | chr3.3:76885305-76885324 | MS.gene06650:CDS | 50.0% | |
| TGAAGAGGGTCAAGTGGCTT+TGG | + | chr3.3:76882395-76882414 | MS.gene06650:CDS | 50.0% | |
| TGATGTTCCCTCAGGTGAAG+TGG | + | chr3.3:76884755-76884774 | MS.gene06650:CDS | 50.0% | |
| TGCTATAGCATCGCTGTAGG+AGG | + | chr3.3:76882684-76882703 | MS.gene06650:CDS | 50.0% | |
| TTTCAGTGGTTCTTCACCGG+TGG | + | chr3.3:76883929-76883948 | MS.gene06650:CDS | 50.0% | |
| TTTCCCAGGAAGCAGGTTCA+TGG | + | chr3.3:76883866-76883885 | MS.gene06650:intron | 50.0% | |
| ! | AAAGGCACAGCCATAGCCAT+TGG | - | chr3.3:76885318-76885337 | None:intergenic | 50.0% |
| ! | GAGATGGGTTCCACTTCCAA+TGG | + | chr3.3:76885299-76885318 | MS.gene06650:CDS | 50.0% |
| ! | TGGTTTCTTGGGGCATCATG+TGG | + | chr3.3:76884196-76884215 | MS.gene06650:CDS | 50.0% |
| !! | AGGCAACGGTTTCTGGTTAC+TGG | - | chr3.3:76884626-76884645 | None:intergenic | 50.0% |
| !! | CTTGGTGCTGTGGTTTCTTG+GGG | + | chr3.3:76884186-76884205 | MS.gene06650:CDS | 50.0% |
| !! | GCTTGCTATAGCATCGCTGT+AGG | + | chr3.3:76882681-76882700 | MS.gene06650:CDS | 50.0% |
| !! | GTACTACCAGGAGTATTCCC+TGG | - | chr3.3:76883299-76883318 | None:intergenic | 50.0% |
| !! | TGGCTTACAAGCATCGAACG+TGG | - | chr3.3:76885030-76885049 | None:intergenic | 50.0% |
| CCAACCAATTGCAGGCTCCT+TGG | - | chr3.3:76883321-76883340 | None:intergenic | 55.0% | |
| CCAAGGAGCCTGCAATTGGT+TGG | + | chr3.3:76883318-76883337 | MS.gene06650:CDS | 55.0% | |
| GTGGCGAAGTCAGAGTGAGA+TGG | - | chr3.3:76885011-76885030 | None:intergenic | 55.0% | |
| GTTGCTGGACTTGTAGGGTG+TGG | + | chr3.3:76884928-76884947 | MS.gene06650:CDS | 55.0% | |
| TTTGTGCTTGCCGCCTTAGC+TGG | + | chr3.3:76884889-76884908 | MS.gene06650:CDS | 55.0% | |
| AGCATTGCAGAAGCCGAGCG+AGG | - | chr3.3:76884812-76884831 | None:intergenic | 60.0% | |
| GCAGGCTCCTTGGTACTACC+AGG | - | chr3.3:76883311-76883330 | None:intergenic | 60.0% | |
| GCATTGCAGAAGCCGAGCGA+GGG | - | chr3.3:76884811-76884830 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 76882303 | 76885580 | 76882303 | ID=MS.gene06650 |
| chr3.3 | mRNA | 76882303 | 76885580 | 76882303 | ID=MS.gene06650.t1;Parent=MS.gene06650 |
| chr3.3 | exon | 76882303 | 76882705 | 76882303 | ID=MS.gene06650.t1.exon1;Parent=MS.gene06650.t1 |
| chr3.3 | CDS | 76882303 | 76882705 | 76882303 | ID=cds.MS.gene06650.t1;Parent=MS.gene06650.t1 |
| chr3.3 | exon | 76883231 | 76883403 | 76883231 | ID=MS.gene06650.t1.exon2;Parent=MS.gene06650.t1 |
| chr3.3 | CDS | 76883231 | 76883403 | 76883231 | ID=cds.MS.gene06650.t1;Parent=MS.gene06650.t1 |
| chr3.3 | exon | 76883680 | 76883777 | 76883680 | ID=MS.gene06650.t1.exon3;Parent=MS.gene06650.t1 |
| chr3.3 | CDS | 76883680 | 76883777 | 76883680 | ID=cds.MS.gene06650.t1;Parent=MS.gene06650.t1 |
| chr3.3 | exon | 76883874 | 76884008 | 76883874 | ID=MS.gene06650.t1.exon4;Parent=MS.gene06650.t1 |
| chr3.3 | CDS | 76883874 | 76884008 | 76883874 | ID=cds.MS.gene06650.t1;Parent=MS.gene06650.t1 |
| chr3.3 | exon | 76884110 | 76884299 | 76884110 | ID=MS.gene06650.t1.exon5;Parent=MS.gene06650.t1 |
| chr3.3 | CDS | 76884110 | 76884299 | 76884110 | ID=cds.MS.gene06650.t1;Parent=MS.gene06650.t1 |
| chr3.3 | exon | 76884384 | 76884498 | 76884384 | ID=MS.gene06650.t1.exon6;Parent=MS.gene06650.t1 |
| chr3.3 | CDS | 76884384 | 76884498 | 76884384 | ID=cds.MS.gene06650.t1;Parent=MS.gene06650.t1 |
| chr3.3 | exon | 76884620 | 76885509 | 76884620 | ID=MS.gene06650.t1.exon7;Parent=MS.gene06650.t1 |
| chr3.3 | CDS | 76884620 | 76885509 | 76884620 | ID=cds.MS.gene06650.t1;Parent=MS.gene06650.t1 |
| chr3.3 | exon | 76885548 | 76885580 | 76885548 | ID=MS.gene06650.t1.exon8;Parent=MS.gene06650.t1 |
| chr3.3 | CDS | 76885548 | 76885580 | 76885548 | ID=cds.MS.gene06650.t1;Parent=MS.gene06650.t1 |
| Gene Sequence |
| Protein sequence |
