AlfalfaGEDB | MS.gene066755

M. sativa cultivar XinJiangDaYe / MS.gene066755

KEGG: K20826
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066755.t1	XP_004490227.1	61.2	85	30	3	12	95	638	720	1.40E-12	82.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066755.t1	Q8GYU3	48.3	58	28	1	15	70	588	645	6.3e-06	51.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066755.t1	A0A1S2XKY2	61.2	85	30	3	12	95	638	720	1.0e-12	82.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene066755	0.805733	1.16E-49	-1.69E-46
MS.gene049821	MS.gene066755	0.808866	2.51E-50	-1.69E-46
MS.gene050807	MS.gene066755	0.8155	8.96E-52	-1.69E-46
MS.gene051243	MS.gene066755	0.80497	1.67E-49	-1.69E-46
MS.gene054657	MS.gene066755	0.804909	1.72E-49	-1.69E-46
MS.gene057444	MS.gene066755	0.80018	1.63E-48	-1.69E-46
MS.gene057869	MS.gene066755	0.814122	1.81E-51	-1.69E-46
MS.gene060803	MS.gene066755	0.804111	2.53E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066755.t1	MTR_2g060610	66.667	72	11	2	12	70	46	117	4.04e-22	84.0
MS.gene066755.t1	MTR_5g046240	75.000	60	14	1	12	70	546	605	3.84e-21	87.0
MS.gene066755.t1	MTR_2g060600	70.833	48	11	1	61	105	27	74	1.81e-15	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 25 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTGTAAAACTCTTGA+AGG	0.378482	2.2:+28479494	MS.gene066755:CDS
AAGCCAATGGACCTGTGCCA+CGG	0.617584	2.2:+28480153	MS.gene066755:CDS
AATCCGTGGCACAGGTCCAT+TGG	0.518651	2.2:-28480156	None:intergenic
AATTCTGGAATCCGTGGCAC+AGG	0.526371	2.2:-28480164	None:intergenic
ACAATTGTACAGAGATTTAT+TGG	0.191689	2.2:+28479444	MS.gene066755:CDS
ACTTGAGTTGATCAAAATAT+TGG	0.275160	2.2:+28480202	MS.gene066755:CDS
AGGTCTTGGCTCAGTTGGAG+CGG	0.602503	2.2:+28479616	MS.gene066755:intron
ATCAACTCAAGTCCGATCTT+TGG	0.291108	2.2:-28480191	None:intergenic
ATGCTTTCAGAGTTCTTGAA+AGG	0.511397	2.2:+28480117	MS.gene066755:intron
CAATTGTACAGAGATTTATT+GGG	0.454992	2.2:+28479445	MS.gene066755:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTCATATTAGGGAAAAGAA+AGG	-	chr2.2:28478697-28478716	None:intergenic	30.0%
CTAAACCTCTGCAATTAATT+TGG	-	chr2.2:28479961-28479980	None:intergenic	30.0%
GAAGGAAAAAAAGTAAACTC+GGG	+	chr2.2:28479737-28479756	MS.gene066755:intron	30.0%
GCAAATGAATGAATTTGGAA+TGG	-	chr2.2:28478560-28478579	None:intergenic	30.0%
GGAAGGAAAAAAAGTAAACT+CGG	+	chr2.2:28479736-28479755	MS.gene066755:intron	30.0%
TATTCTCTAATGATTGCAGA+TGG	+	chr2.2:28479325-28479344	MS.gene066755:intron	30.0%
AAACTGTTTCAAGGGCAATT+TGG	+	chr2.2:28478497-28478516	MS.gene066755:intron	35.0%
AACTGTTTCAAGGGCAATTT+GGG	+	chr2.2:28478498-28478517	MS.gene066755:intron	35.0%
AAGATCCAACCAAAAAGAGA+AGG	-	chr2.2:28479851-28479870	None:intergenic	35.0%
AGGATTGACTACCTAGATTT+GGG	+	chr2.2:28479149-28479168	MS.gene066755:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	28478367	28480259	28478367	ID=MS.gene066755
chr2.2	mRNA	28478367	28480259	28478367	ID=MS.gene066755.t1;Parent=MS.gene066755
chr2.2	exon	28478367	28478409	28478367	ID=MS.gene066755.t1.exon1;Parent=MS.gene066755.t1
chr2.2	CDS	28478367	28478409	28478367	ID=cds.MS.gene066755.t1;Parent=MS.gene066755.t1
chr2.2	exon	28479418	28479515	28479418	ID=MS.gene066755.t1.exon2;Parent=MS.gene066755.t1
chr2.2	CDS	28479418	28479515	28479418	ID=cds.MS.gene066755.t1;Parent=MS.gene066755.t1
chr2.2	exon	28479618	28479667	28479618	ID=MS.gene066755.t1.exon3;Parent=MS.gene066755.t1
chr2.2	CDS	28479618	28479667	28479618	ID=cds.MS.gene066755.t1;Parent=MS.gene066755.t1
chr2.2	exon	28480127	28480259	28480127	ID=MS.gene066755.t1.exon4;Parent=MS.gene066755.t1
chr2.2	CDS	28480127	28480259	28480127	ID=cds.MS.gene066755.t1;Parent=MS.gene066755.t1

Gene Sequence

>MS.gene066755

ATGAGGATAATAGCGGAGCAGTTAACGATAGTAGCCGCTCCAGGTGAGATCTTGGCGGAGCGGGGTCGCAGAGCAGGAACAGCTTTAGCACCACTATATTGTTTTAATGTGGAAAATGACCCTAAAAATTAAACTGTTTCAAGGGCAATTTGGGTTTTTTTCTGTCTTCTCACTGCTTGAATGTTCTGATCCATTCCAAATTCATTCATTTGCGCCGTTCAAGTTTGTGAGCCCTAACCGTTTTCATCGCTCTGTTCCGTTCAAGTTTTGCACCCATCGCCGTACAGCCACCATGCAGTCATGTTCTTTCAATTACTCTGTTCTGCTCCTTTCTTTTCCCTAATATGAGTTATCTCTGTAAAATACATTCTTGTATGCATTATTTATATATGTTCTCTCTGTTCTTTTATGTTTTTCTCCATCATGCTTTTCTTCTTCCTCACTTTAAGATTTTTTTATACGTAATGTTCTTATGCATTGTATTTTTGTATGGTTACTATCACAAACTATTCATATCTCATCGTATTGCTTTTGAAAATGAACTTCATTCCTATATGCATTGTTCAGAATTTTATGGTATTGCCCTTAAGTTCATATTATATGTTCTCTCTGTTATTAATTTTTTTATTCATGTAATTTTATGAACTTCATTTTTATTCAGAGAATTTTTTGAGTTATTTGTTTAATTTTACATTAAGTATATGTTTATATCATTATTTATGTAATTTGTCCAAAACATGATCAAATAGCAGACATCCCGCTATAAGCTATCCCCGCTATCTAGGATTGACTACCTAGATTTGGGCTAGGTTTGAGTCAACCCCAAAAGCTATCTCAAGGGGGGAGGATTGCCCAAATTTTACGAGAAAAACATTGACTATATCTGTAGTTGACGTGCAATTAATTTCTATAAGAAACACTTTGATCATATTTGTAGTCAATGTGTAGTCAAACTCAGTATTCTCTAATGATTGCAGATGGATTCCACAGCAGCTTTGGAAGAGTCTATTGTTTCTACACTGATTGTCATAGCAAGGATGTGCTAATGCAGTGCTGAAGTGCGAAATGCTTATTCTGACAATTGTACAGAGATTTATTGGGAATTTTGAAATTCAATCTTCCAGAATAAAATCTGTAAAACTCTTGAAGGTGAGTTGTATCTTTAATTTCATTTTATTCCTTTTTCTGTTAAAATATTTTTGCATTTACAGTTAGAGAATCATACTAATGTTTGATATGATTTTGGTTAAGGTCTTGGCTCAGTTGGAGCGGAAAACTTGTTTGGAGTTTATAAAGAATGGGTACTTCAATGCCATGACTTGAAATTTATATCAACTTCCTTTGTCCATGGACAACTGGCTAAAGTTAGGGAAGGAAAAAAAGTAAACTCGGGTCTGCTCTGACTATTGAACAATTGCGATTCTGGAGGGTTTGCATTTGATATGGATATTTTGTGTCTTACTTCTCCGAGATATTCCATGCCTTCTCTTTTTGGTTGGATCTTCCTTCATTTGAAAAACTTATCGATAATGATGTCTTGTATGAATCTACTTGCATCTCTAGGGAGGCATATCTTGTTCTGGAATGACTTCCAAATTAATTGCAGAGGTTTAGTCTTGGAGTTATGTTGGTGCGATGGTTGACTTAAGAAAGTGGATTGCAACAAGAAGTGGTCCACATGTATCTAAAATTGTTAGGGGGAAATGTTATTGTAACTCTTTTTTCGTTGGTGTATGCTGCTGTGACTCACATGCTTTCAGAGTTCTTGAAAGGGTGACATTACAGGAAGCCAATGGACCTGTGCCACGGATTCCAGAATTTGTTCCAAAGATCGGACTTGAGTTGATCAAAATATTGGCATTTGGGCTTTTCAGGGACAAAATGTGCCGATGA

Protein sequence

>MS.gene066755.t1

MRIIAEQLTIVAAPVLKCEMLILTIVQRFIGNFEIQSSRIKSVKLLKVLAQLERKTCLEFIKNGVLERVTLQEANGPVPRIPEFVPKIGLELIKILAFGLFRDKMCR