Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066977.t1 | XP_003619827.1 | 96 | 177 | 7 | 0 | 1 | 177 | 1 | 177 | 2.20E-92 | 348.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066977.t1 | Q9LVH4 | 67.8 | 171 | 55 | 0 | 7 | 177 | 7 | 177 | 3.2e-63 | 242.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066977.t1 | G7KPS8 | 96.0 | 177 | 7 | 0 | 1 | 177 | 1 | 177 | 1.6e-92 | 348.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04991 | MS.gene066977 | -0.841283 | 5.22E-58 | -1.69E-46 |
| MS.gene051122 | MS.gene066977 | 0.801756 | 7.75E-49 | -1.69E-46 |
| MS.gene060851 | MS.gene066977 | 0.807047 | 6.12E-50 | -1.69E-46 |
| MS.gene060852 | MS.gene066977 | 0.80673 | 7.14E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066977.t1 | MTR_6g069470 | 96.045 | 177 | 7 | 0 | 1 | 177 | 1 | 177 | 7.55e-128 | 356 |
| MS.gene066977.t1 | MTR_8g107340 | 73.529 | 170 | 45 | 0 | 8 | 177 | 12 | 181 | 8.40e-94 | 270 |
| MS.gene066977.t1 | MTR_3g067585 | 67.485 | 163 | 53 | 0 | 13 | 175 | 1 | 163 | 2.80e-82 | 241 |
| MS.gene066977.t1 | MTR_2g011590 | 65.644 | 163 | 56 | 0 | 15 | 177 | 2 | 164 | 1.79e-78 | 231 |
| MS.gene066977.t1 | MTR_1g031650 | 56.707 | 164 | 70 | 1 | 15 | 177 | 4 | 167 | 2.29e-66 | 201 |
| MS.gene066977.t1 | MTR_4g084280 | 50.000 | 164 | 82 | 0 | 13 | 176 | 1 | 164 | 5.02e-57 | 177 |
| MS.gene066977.t1 | MTR_1g031650 | 55.814 | 129 | 57 | 0 | 49 | 177 | 2 | 130 | 1.62e-50 | 159 |
| MS.gene066977.t1 | MTR_8g088320 | 44.375 | 160 | 88 | 1 | 13 | 171 | 161 | 320 | 9.93e-43 | 145 |
| MS.gene066977.t1 | MTR_2g030230 | 42.353 | 170 | 97 | 1 | 3 | 171 | 158 | 327 | 1.81e-40 | 139 |
| MS.gene066977.t1 | MTR_2g027100 | 38.854 | 157 | 94 | 2 | 13 | 167 | 1 | 157 | 1.76e-35 | 122 |
| MS.gene066977.t1 | MTR_8g038400 | 41.176 | 170 | 95 | 2 | 7 | 171 | 196 | 365 | 2.53e-33 | 121 |
| MS.gene066977.t1 | MTR_3g017500 | 38.750 | 160 | 97 | 1 | 13 | 171 | 209 | 368 | 2.38e-31 | 116 |
| MS.gene066977.t1 | MTR_3g017500 | 38.750 | 160 | 97 | 1 | 13 | 171 | 239 | 398 | 4.28e-31 | 116 |
| MS.gene066977.t1 | MTR_1g025550 | 41.573 | 89 | 47 | 3 | 13 | 96 | 255 | 343 | 1.55e-13 | 68.2 |
| MS.gene066977.t1 | MTR_4g073400 | 44.944 | 89 | 44 | 3 | 13 | 96 | 255 | 343 | 6.28e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066977.t1 | AT3G17980 | 66.102 | 177 | 60 | 0 | 1 | 177 | 1 | 177 | 1.88e-85 | 249 |
| MS.gene066977.t1 | AT1G73580 | 69.461 | 167 | 51 | 0 | 11 | 177 | 2 | 168 | 7.15e-82 | 239 |
| MS.gene066977.t1 | AT1G48590 | 66.864 | 169 | 55 | 1 | 9 | 177 | 2 | 169 | 8.50e-81 | 237 |
| MS.gene066977.t1 | AT1G48590 | 66.864 | 169 | 55 | 1 | 9 | 177 | 2 | 169 | 8.50e-81 | 237 |
| MS.gene066977.t1 | AT1G48590 | 66.864 | 169 | 55 | 1 | 9 | 177 | 33 | 200 | 1.31e-80 | 238 |
| MS.gene066977.t1 | AT5G37740 | 61.905 | 168 | 61 | 1 | 13 | 177 | 1 | 168 | 3.50e-74 | 220 |
| MS.gene066977.t1 | AT1G70810 | 61.212 | 165 | 64 | 0 | 13 | 177 | 1 | 165 | 1.66e-71 | 213 |
| MS.gene066977.t1 | AT1G66360 | 60.366 | 164 | 63 | 1 | 13 | 174 | 1 | 164 | 7.05e-71 | 212 |
| MS.gene066977.t1 | AT5G37740 | 58.427 | 178 | 61 | 2 | 13 | 177 | 1 | 178 | 1.18e-70 | 212 |
| MS.gene066977.t1 | AT1G70790 | 61.963 | 163 | 60 | 1 | 17 | 177 | 6 | 168 | 2.07e-69 | 209 |
| MS.gene066977.t1 | AT1G70790 | 61.963 | 163 | 60 | 1 | 17 | 177 | 6 | 168 | 2.07e-69 | 209 |
| MS.gene066977.t1 | AT1G70790 | 61.963 | 163 | 60 | 1 | 17 | 177 | 6 | 168 | 2.07e-69 | 209 |
| MS.gene066977.t1 | AT2G01540 | 58.282 | 163 | 66 | 1 | 17 | 177 | 6 | 168 | 2.69e-67 | 203 |
| MS.gene066977.t1 | AT1G23140 | 57.407 | 162 | 69 | 0 | 13 | 174 | 1 | 162 | 2.17e-65 | 198 |
| MS.gene066977.t1 | AT1G70800 | 55.758 | 165 | 73 | 0 | 13 | 177 | 10 | 174 | 7.43e-65 | 197 |
| MS.gene066977.t1 | AT1G48590 | 52.071 | 169 | 48 | 2 | 9 | 177 | 33 | 168 | 2.04e-56 | 175 |
| MS.gene066977.t1 | AT1G70790 | 60.000 | 130 | 50 | 1 | 50 | 177 | 2 | 131 | 6.23e-51 | 160 |
| MS.gene066977.t1 | AT4G05330 | 43.750 | 160 | 89 | 1 | 13 | 171 | 140 | 299 | 2.33e-38 | 133 |
| MS.gene066977.t1 | AT5G47710 | 40.244 | 164 | 96 | 2 | 13 | 174 | 1 | 164 | 4.09e-38 | 129 |
| MS.gene066977.t1 | AT5G47710 | 40.244 | 164 | 96 | 2 | 13 | 174 | 1 | 164 | 4.09e-38 | 129 |
| MS.gene066977.t1 | AT5G47710 | 40.244 | 164 | 96 | 2 | 13 | 174 | 1 | 164 | 4.09e-38 | 129 |
| MS.gene066977.t1 | AT5G47710 | 40.244 | 164 | 96 | 2 | 13 | 174 | 1 | 164 | 4.09e-38 | 129 |
| MS.gene066977.t1 | AT4G05330 | 43.750 | 160 | 89 | 1 | 13 | 171 | 175 | 334 | 9.19e-38 | 132 |
| MS.gene066977.t1 | AT4G05330 | 43.750 | 160 | 89 | 1 | 13 | 171 | 175 | 334 | 9.19e-38 | 132 |
| MS.gene066977.t1 | AT4G21160 | 42.500 | 160 | 91 | 1 | 13 | 171 | 176 | 335 | 1.26e-36 | 129 |
| MS.gene066977.t1 | AT4G21160 | 42.500 | 160 | 91 | 1 | 13 | 171 | 176 | 335 | 1.26e-36 | 129 |
| MS.gene066977.t1 | AT4G21160 | 42.500 | 160 | 91 | 1 | 13 | 171 | 176 | 335 | 1.26e-36 | 129 |
| MS.gene066977.t1 | AT4G21160 | 42.500 | 160 | 91 | 1 | 13 | 171 | 176 | 335 | 1.26e-36 | 129 |
| MS.gene066977.t1 | AT3G07940 | 43.125 | 160 | 90 | 1 | 13 | 171 | 224 | 383 | 1.72e-35 | 127 |
| MS.gene066977.t1 | AT1G03370 | 34.746 | 118 | 67 | 3 | 20 | 132 | 3 | 115 | 1.08e-12 | 65.9 |
| MS.gene066977.t1 | AT1G03370 | 34.746 | 118 | 67 | 3 | 20 | 132 | 3 | 115 | 1.13e-12 | 65.9 |
| MS.gene066977.t1 | AT5G04220 | 44.706 | 85 | 42 | 3 | 17 | 96 | 38 | 122 | 1.27e-12 | 65.1 |
| MS.gene066977.t1 | AT5G04220 | 44.706 | 85 | 42 | 3 | 17 | 96 | 260 | 344 | 1.67e-12 | 65.1 |
| MS.gene066977.t1 | AT5G04220 | 44.706 | 85 | 42 | 3 | 17 | 96 | 198 | 282 | 1.70e-12 | 65.1 |
| MS.gene066977.t1 | AT2G20990 | 33.577 | 137 | 73 | 5 | 17 | 140 | 259 | 390 | 5.35e-12 | 63.5 |
| MS.gene066977.t1 | AT2G20990 | 33.577 | 137 | 73 | 5 | 17 | 140 | 297 | 428 | 6.10e-12 | 63.5 |
| MS.gene066977.t1 | AT2G20990 | 34.074 | 135 | 68 | 7 | 17 | 136 | 259 | 387 | 3.42e-11 | 61.2 |
Find 40 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCACTTACCAATGTAAC+TGG | 0.259798 | 6.4:-47640221 | None:intergenic |
| TTGCACTGGATTGATCTTCC+TGG | 0.299246 | 6.4:+47641351 | MS.gene066977:CDS |
| TCTCTGATGGAGAATCTATT+AGG | 0.386056 | 6.4:+47639385 | MS.gene066977:CDS |
| TACGGTGCCGTTTGCAAGGC+CGG | 0.395496 | 6.4:-47641196 | None:intergenic |
| ATTGATCTTCCTGGTTCTAA+AGG | 0.412234 | 6.4:+47641360 | MS.gene066977:CDS |
| GCAGTCTAAGGATCATATCT+TGG | 0.412690 | 6.4:-47641296 | None:intergenic |
| TACATCTTGATTACAACATA+AGG | 0.417586 | 6.4:-47639472 | None:intergenic |
| ACCAATGTAACTGGGTGATT+AGG | 0.417936 | 6.4:-47640212 | None:intergenic |
| TGGTTGTATCCGCTTGATTA+CGG | 0.424732 | 6.4:-47641214 | None:intergenic |
| GATCTATAACAGACAGAGTA+AGG | 0.440032 | 6.4:-47640190 | None:intergenic |
| GCAAGGCAGTTGTGCTTGCT+TGG | 0.456659 | 6.4:-47641234 | None:intergenic |
| TGTAATCAAGATGTATAATC+AGG | 0.457131 | 6.4:+47639480 | MS.gene066977:CDS |
| TTTAGCAAAGATGACAAAAT+GGG | 0.458958 | 6.4:+47641120 | MS.gene066977:CDS |
| GCCTTGAGGATGAATGTAAC+CGG | 0.480599 | 6.4:+47641177 | MS.gene066977:CDS |
| ATAATAAATACAGCTCTCTT+CGG | 0.487354 | 6.4:-47641256 | None:intergenic |
| AATGTAACCGGCCTTGCAAA+CGG | 0.489187 | 6.4:+47641189 | MS.gene066977:CDS |
| TGATTACGGTGCCGTTTGCA+AGG | 0.511473 | 6.4:-47641200 | None:intergenic |
| AAGTGGAAATCAGTTTGCAC+TGG | 0.519685 | 6.4:+47641337 | MS.gene066977:CDS |
| CATCCTCAAGGCTTCTATGT+AGG | 0.521839 | 6.4:-47641166 | None:intergenic |
| AGCTGTATTTATTATAGCAA+TGG | 0.541875 | 6.4:+47641264 | MS.gene066977:CDS |
| AGATGCGGTATTTGACGCCT+CGG | 0.547337 | 6.4:+47641143 | MS.gene066977:CDS |
| CAAGGCTTCTATGTAGGCCG+AGG | 0.548361 | 6.4:-47641160 | None:intergenic |
| GCCGGTTACATTCATCCTCA+AGG | 0.552249 | 6.4:-47641178 | None:intergenic |
| TCCTAATCACCCAGTTACAT+TGG | 0.552725 | 6.4:+47640211 | MS.gene066977:CDS |
| AGAATCTATTAGGCCTTCTG+AGG | 0.559791 | 6.4:+47639395 | MS.gene066977:CDS |
| GATTATAAACCTTTAGAACC+AGG | 0.577547 | 6.4:-47641369 | None:intergenic |
| GATCCTTAGACTGCAAAATG+TGG | 0.590504 | 6.4:+47641305 | MS.gene066977:CDS |
| AAATGTGGAATGTGGTGAAG+TGG | 0.600672 | 6.4:+47641320 | MS.gene066977:CDS |
| GCTTCACACGAACCCTCAGA+AGG | 0.617469 | 6.4:-47639408 | None:intergenic |
| GTAAGGTCTTCATTCCACTC+AGG | 0.618175 | 6.4:-47640173 | None:intergenic |
| AAAAGAATGTTAATCCTGAG+TGG | 0.623609 | 6.4:+47640159 | MS.gene066977:CDS |
| AGATGACAAAATGGGAGATG+CGG | 0.626598 | 6.4:+47641128 | MS.gene066977:CDS |
| CGGCCTACATAGAAGCCTTG+AGG | 0.640768 | 6.4:+47641163 | MS.gene066977:CDS |
| AAATACAGCTCTCTTCGGCA+AGG | 0.644242 | 6.4:-47641251 | None:intergenic |
| GAATCTATTAGGCCTTCTGA+GGG | 0.645365 | 6.4:+47639396 | MS.gene066977:CDS |
| CTGAGGGTTCGTGTGAAGCG+TGG | 0.662794 | 6.4:+47639412 | MS.gene066977:CDS |
| TACGAACATCACGAACAGCA+AGG | 0.662931 | 6.4:-47639441 | None:intergenic |
| AATCACTTACCAATGTAACT+GGG | 0.672409 | 6.4:-47640220 | None:intergenic |
| CAAACGGCACCGTAATCAAG+CGG | 0.692308 | 6.4:+47641205 | MS.gene066977:CDS |
| AGACTGCAAAATGTGGAATG+TGG | 0.721570 | 6.4:+47641312 | MS.gene066977:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAAAAAAATAAAATAAAG+TGG | - | chr6.4:47639684-47639703 | None:intergenic | 10.0% |
| !! | TTTGTTGAAAAAAAATTAAA+GGG | - | chr6.4:47639620-47639639 | None:intergenic | 10.0% |
| !!! | ATTTGTTGAAAAAAAATTAA+AGG | - | chr6.4:47639621-47639640 | None:intergenic | 10.0% |
| !! | TTATAATCAGAAACATTTAA+TGG | - | chr6.4:47640718-47640737 | None:intergenic | 15.0% |
| !! | TTGTTGAAAAAAAATTAAAG+GGG | - | chr6.4:47639619-47639638 | None:intergenic | 15.0% |
| !!! | CTTTTAATATATTGAATCAA+GGG | + | chr6.4:47639785-47639804 | MS.gene066977:intron | 15.0% |
| !!! | TTACAAATATTTGACTTAAT+CGG | - | chr6.4:47640943-47640962 | None:intergenic | 15.0% |
| !! | AAATATTTGTAATGATCTGA+CGG | + | chr6.4:47640951-47640970 | MS.gene066977:intron | 20.0% |
| !! | ATTCAAAGTGATAAAAGAAA+GGG | - | chr6.4:47640605-47640624 | None:intergenic | 20.0% |
| !! | CAAAAATTGTTTAACTGAAA+TGG | - | chr6.4:47640291-47640310 | None:intergenic | 20.0% |
| !! | GAATTAACATTAAGAAAAGT+TGG | - | chr6.4:47639590-47639609 | None:intergenic | 20.0% |
| !! | TATTTGTTCATTCAATGTAT+TGG | + | chr6.4:47641039-47641058 | MS.gene066977:intron | 20.0% |
| !! | TGGTAAAAAAATCTAATGAA+AGG | - | chr6.4:47640790-47640809 | None:intergenic | 20.0% |
| !! | TTGAATGAACAAATATTGAT+AGG | - | chr6.4:47641034-47641053 | None:intergenic | 20.0% |
| !!! | GCTTTTAATATATTGAATCA+AGG | + | chr6.4:47639784-47639803 | MS.gene066977:intron | 20.0% |
| ! | AATCTAATGAAAGGTAAAAC+AGG | - | chr6.4:47640781-47640800 | None:intergenic | 25.0% |
| ! | AGCTGTATTTATTATAGCAA+TGG | + | chr6.4:47641264-47641283 | MS.gene066977:CDS | 25.0% |
| ! | ATAATAAATACAGCTCTCTT+CGG | - | chr6.4:47641259-47641278 | None:intergenic | 25.0% |
| ! | ATTGATGTTGAATGTAACAT+AGG | + | chr6.4:47639996-47640015 | MS.gene066977:intron | 25.0% |
| ! | CATTCAAAGTGATAAAAGAA+AGG | - | chr6.4:47640606-47640625 | None:intergenic | 25.0% |
| ! | CTTCTGATTTATTGAATCAA+GGG | + | chr6.4:47639658-47639677 | MS.gene066977:intron | 25.0% |
| ! | GTAAAAAATCTTTACACTGA+AGG | + | chr6.4:47640992-47641011 | MS.gene066977:intron | 25.0% |
| ! | TACATCTTGATTACAACATA+AGG | - | chr6.4:47639475-47639494 | None:intergenic | 25.0% |
| ! | TCAATAACAAGAAAATTGAG+TGG | - | chr6.4:47639730-47639749 | None:intergenic | 25.0% |
| ! | TGAAAAAAAATTAAAGGGGT+TGG | - | chr6.4:47639615-47639634 | None:intergenic | 25.0% |
| ! | TGTAATCAAGATGTATAATC+AGG | + | chr6.4:47639480-47639499 | MS.gene066977:CDS | 25.0% |
| ! | TTTAGCAAAGATGACAAAAT+GGG | + | chr6.4:47641120-47641139 | MS.gene066977:CDS | 25.0% |
| !! | ATGATGATGATGTTGAAAAA+TGG | - | chr6.4:47639534-47639553 | None:intergenic | 25.0% |
| !! | TTTTAGCAAAGATGACAAAA+TGG | + | chr6.4:47641119-47641138 | MS.gene066977:CDS | 25.0% |
| !!! | ACATAGGTTTTAGTTATTGA+AGG | + | chr6.4:47640012-47640031 | MS.gene066977:intron | 25.0% |
| !!! | CATAGGTTTTAGTTATTGAA+GGG | + | chr6.4:47640013-47640032 | MS.gene066977:intron | 25.0% |
| !!! | TGTTGACACTTTTTCTATAT+AGG | + | chr6.4:47639925-47639944 | MS.gene066977:intron | 25.0% |
| AAAAGAATGTTAATCCTGAG+TGG | + | chr6.4:47640159-47640178 | MS.gene066977:CDS | 30.0% | |
| AATCACTTACCAATGTAACT+GGG | - | chr6.4:47640223-47640242 | None:intergenic | 30.0% | |
| ACAGTATAAACATTTGACAC+TGG | - | chr6.4:47640877-47640896 | None:intergenic | 30.0% | |
| AGCATCAAAAAAATCTCTGA+TGG | + | chr6.4:47639372-47639391 | MS.gene066977:CDS | 30.0% | |
| CAATATCTAGTATCTCTACT+AGG | - | chr6.4:47640058-47640077 | None:intergenic | 30.0% | |
| GATAAAAGAAAGGGTTTGAA+AGG | - | chr6.4:47640596-47640615 | None:intergenic | 30.0% | |
| GCTTCTGATTTATTGAATCA+AGG | + | chr6.4:47639657-47639676 | MS.gene066977:intron | 30.0% | |
| TGAAGAAAATGAGTAGAAAC+TGG | + | chr6.4:47639892-47639911 | MS.gene066977:intron | 30.0% | |
| TGACAACACTGATCTATTTA+TGG | + | chr6.4:47640498-47640517 | MS.gene066977:intron | 30.0% | |
| ! | AGTAATGAATTTTGAACCTG+TGG | + | chr6.4:47640559-47640578 | MS.gene066977:intron | 30.0% |
| !!! | AGAGATTTTTTTGATGCTGA+TGG | - | chr6.4:47639370-47639389 | None:intergenic | 30.0% |
| AGCACTCGTTAAAGAAACAA+TGG | - | chr6.4:47640810-47640829 | None:intergenic | 35.0% | |
| CAATCACTTACCAATGTAAC+TGG | - | chr6.4:47640224-47640243 | None:intergenic | 35.0% | |
| CAATGTATTGGATTGCTCAT+TGG | + | chr6.4:47641051-47641070 | MS.gene066977:intron | 35.0% | |
| CTCAAAAAAATGAGTTCCCT+TGG | - | chr6.4:47640833-47640852 | None:intergenic | 35.0% | |
| GATCTATAACAGACAGAGTA+AGG | - | chr6.4:47640193-47640212 | None:intergenic | 35.0% | |
| TAGATCAGTGTTGTCAATTG+CGG | - | chr6.4:47640494-47640513 | None:intergenic | 35.0% | |
| TATAGCAGTGTACAACATAG+CGG | + | chr6.4:47640349-47640368 | MS.gene066977:intron | 35.0% | |
| TCTCAATATCCTGGTTTCAT+TGG | - | chr6.4:47640526-47640545 | None:intergenic | 35.0% | |
| TCTCTGATGGAGAATCTATT+AGG | + | chr6.4:47639385-47639404 | MS.gene066977:CDS | 35.0% | |
| TTGTCCATTCTACTCATTTG+CGG | + | chr6.4:47640637-47640656 | MS.gene066977:intron | 35.0% | |
| TTTATGGTTCCAATGAAACC+AGG | + | chr6.4:47640514-47640533 | MS.gene066977:intron | 35.0% | |
| ! | ATTCCACATTTTGCAGTCTA+AGG | - | chr6.4:47641311-47641330 | None:intergenic | 35.0% |
| ! | CTTAACCAGTTTTTCCCTTT+AGG | - | chr6.4:47640679-47640698 | None:intergenic | 35.0% |
| !! | ATTGATCTTCCTGGTTCTAA+AGG | + | chr6.4:47641360-47641379 | MS.gene066977:CDS | 35.0% |
| AAATGTGGAATGTGGTGAAG+TGG | + | chr6.4:47641320-47641339 | MS.gene066977:CDS | 40.0% | |
| AAGACCGCAAATGAGTAGAA+TGG | - | chr6.4:47640644-47640663 | None:intergenic | 40.0% | |
| AAGTGGAAATCAGTTTGCAC+TGG | + | chr6.4:47641337-47641356 | MS.gene066977:CDS | 40.0% | |
| ACCAATGTAACTGGGTGATT+AGG | - | chr6.4:47640215-47640234 | None:intergenic | 40.0% | |
| AGAATCTATTAGGCCTTCTG+AGG | + | chr6.4:47639395-47639414 | MS.gene066977:CDS | 40.0% | |
| AGACTGCAAAATGTGGAATG+TGG | + | chr6.4:47641312-47641331 | MS.gene066977:CDS | 40.0% | |
| AGATGACAAAATGGGAGATG+CGG | + | chr6.4:47641128-47641147 | MS.gene066977:CDS | 40.0% | |
| GAATCTATTAGGCCTTCTGA+GGG | + | chr6.4:47639396-47639415 | MS.gene066977:CDS | 40.0% | |
| GATCCTTAGACTGCAAAATG+TGG | + | chr6.4:47641305-47641324 | MS.gene066977:CDS | 40.0% | |
| GCAGTCTAAGGATCATATCT+TGG | - | chr6.4:47641299-47641318 | None:intergenic | 40.0% | |
| TCCTAATCACCCAGTTACAT+TGG | + | chr6.4:47640211-47640230 | MS.gene066977:CDS | 40.0% | |
| TGGTTGTATCCGCTTGATTA+CGG | - | chr6.4:47641217-47641236 | None:intergenic | 40.0% | |
| TTCTTTAACGAGTGCTCCAA+GGG | + | chr6.4:47640814-47640833 | MS.gene066977:intron | 40.0% | |
| TTGTACGACTCTCAATATCC+TGG | - | chr6.4:47640535-47640554 | None:intergenic | 40.0% | |
| TTTCTTTAACGAGTGCTCCA+AGG | + | chr6.4:47640813-47640832 | MS.gene066977:intron | 40.0% | |
| !! | ATTTGCGGTCTTGATAACGA+GGG | + | chr6.4:47640652-47640671 | MS.gene066977:intron | 40.0% |
| !! | TTGATAACGAGGGTCCTAAA+GGG | + | chr6.4:47640662-47640681 | MS.gene066977:intron | 40.0% |
| AAAGGTTTGCATGATGCCAC+AGG | - | chr6.4:47640578-47640597 | None:intergenic | 45.0% | |
| AAATACAGCTCTCTTCGGCA+AGG | - | chr6.4:47641254-47641273 | None:intergenic | 45.0% | |
| AATGTAACCGGCCTTGCAAA+CGG | + | chr6.4:47641189-47641208 | MS.gene066977:CDS | 45.0% | |
| AGGGTCCTAAAGGGAAAAAC+TGG | + | chr6.4:47640671-47640690 | MS.gene066977:intron | 45.0% | |
| CATCCTCAAGGCTTCTATGT+AGG | - | chr6.4:47641169-47641188 | None:intergenic | 45.0% | |
| GCCTTGAGGATGAATGTAAC+CGG | + | chr6.4:47641177-47641196 | MS.gene066977:CDS | 45.0% | |
| GGCAGTGTATCAGAACATCT+CGG | - | chr6.4:47640856-47640875 | None:intergenic | 45.0% | |
| GTAAGGTCTTCATTCCACTC+AGG | - | chr6.4:47640176-47640195 | None:intergenic | 45.0% | |
| TACGAACATCACGAACAGCA+AGG | - | chr6.4:47639444-47639463 | None:intergenic | 45.0% | |
| TTGCACTGGATTGATCTTCC+TGG | + | chr6.4:47641351-47641370 | MS.gene066977:CDS | 45.0% | |
| !! | CATTTGCGGTCTTGATAACG+AGG | + | chr6.4:47640651-47640670 | MS.gene066977:intron | 45.0% |
| !! | CTTGATAACGAGGGTCCTAA+AGG | + | chr6.4:47640661-47640680 | MS.gene066977:intron | 45.0% |
| AGATGCGGTATTTGACGCCT+CGG | + | chr6.4:47641143-47641162 | MS.gene066977:CDS | 50.0% | |
| CAAACGGCACCGTAATCAAG+CGG | + | chr6.4:47641205-47641224 | MS.gene066977:CDS | 50.0% | |
| GCCGGTTACATTCATCCTCA+AGG | - | chr6.4:47641181-47641200 | None:intergenic | 50.0% | |
| !! | TGATTACGGTGCCGTTTGCA+AGG | - | chr6.4:47641203-47641222 | None:intergenic | 50.0% |
| CAAGGCTTCTATGTAGGCCG+AGG | - | chr6.4:47641163-47641182 | None:intergenic | 55.0% | |
| CGGCCTACATAGAAGCCTTG+AGG | + | chr6.4:47641163-47641182 | MS.gene066977:CDS | 55.0% | |
| GCAAGGCAGTTGTGCTTGCT+TGG | - | chr6.4:47641237-47641256 | None:intergenic | 55.0% | |
| GCTTCACACGAACCCTCAGA+AGG | - | chr6.4:47639411-47639430 | None:intergenic | 55.0% | |
| CTGAGGGTTCGTGTGAAGCG+TGG | + | chr6.4:47639412-47639431 | MS.gene066977:CDS | 60.0% | |
| !! | TACGGTGCCGTTTGCAAGGC+CGG | - | chr6.4:47641199-47641218 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 47639355 | 47641389 | 47639355 | ID=MS.gene066977 |
| chr6.4 | mRNA | 47639355 | 47641389 | 47639355 | ID=MS.gene066977.t1;Parent=MS.gene066977 |
| chr6.4 | exon | 47639355 | 47639501 | 47639355 | ID=MS.gene066977.t1.exon1;Parent=MS.gene066977.t1 |
| chr6.4 | CDS | 47639355 | 47639501 | 47639355 | ID=cds.MS.gene066977.t1;Parent=MS.gene066977.t1 |
| chr6.4 | exon | 47640137 | 47640232 | 47640137 | ID=MS.gene066977.t1.exon2;Parent=MS.gene066977.t1 |
| chr6.4 | CDS | 47640137 | 47640232 | 47640137 | ID=cds.MS.gene066977.t1;Parent=MS.gene066977.t1 |
| chr6.4 | exon | 47641099 | 47641389 | 47641099 | ID=MS.gene066977.t1.exon3;Parent=MS.gene066977.t1 |
| chr6.4 | CDS | 47641099 | 47641389 | 47641099 | ID=cds.MS.gene066977.t1;Parent=MS.gene066977.t1 |
| Gene Sequence |
| Protein sequence |
