Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067297.t1 | AFK35236.1 | 99.5 | 186 | 1 | 0 | 1 | 186 | 1 | 186 | 9.80E-102 | 379.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067297.t1 | P92964 | 76.1 | 180 | 40 | 2 | 1 | 177 | 1 | 180 | 1.6e-73 | 277.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067297.t1 | G7LAU9 | 99.5 | 186 | 1 | 0 | 1 | 186 | 1 | 186 | 7.0e-102 | 379.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene011973 | MS.gene067297 | PPI |
MS.gene047872 | MS.gene067297 | PPI |
MS.gene82776 | MS.gene067297 | PPI |
MS.gene053099 | MS.gene067297 | PPI |
MS.gene032681 | MS.gene067297 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067297.t1 | MTR_8g027190 | 99.197 | 249 | 2 | 0 | 1 | 249 | 1 | 249 | 4.89e-180 | 494 |
MS.gene067297.t1 | MTR_8g027190 | 98.157 | 217 | 4 | 0 | 33 | 249 | 19 | 235 | 1.30e-153 | 427 |
MS.gene067297.t1 | MTR_8g027190 | 95.495 | 222 | 10 | 0 | 28 | 249 | 8 | 229 | 3.32e-153 | 426 |
MS.gene067297.t1 | MTR_8g032590 | 54.373 | 263 | 88 | 4 | 1 | 243 | 1 | 251 | 4.01e-85 | 255 |
MS.gene067297.t1 | MTR_1g101520 | 56.604 | 265 | 88 | 7 | 1 | 248 | 1 | 255 | 1.17e-79 | 244 |
MS.gene067297.t1 | MTR_8g032590 | 52.402 | 229 | 77 | 4 | 35 | 243 | 24 | 240 | 1.32e-64 | 202 |
MS.gene067297.t1 | MTR_8g032590 | 52.036 | 221 | 74 | 4 | 43 | 243 | 2 | 210 | 1.53e-59 | 189 |
MS.gene067297.t1 | MTR_1g101520 | 55.157 | 223 | 73 | 7 | 43 | 248 | 2 | 214 | 6.62e-55 | 180 |
MS.gene067297.t1 | MTR_8g058530 | 31.953 | 169 | 93 | 5 | 2 | 150 | 7 | 173 | 2.87e-14 | 71.2 |
MS.gene067297.t1 | MTR_7g108810 | 32.716 | 162 | 87 | 5 | 2 | 143 | 108 | 267 | 1.12e-13 | 70.1 |
MS.gene067297.t1 | MTR_1g083400 | 32.298 | 161 | 87 | 5 | 2 | 142 | 38 | 196 | 2.78e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067297.t1 | AT3G61860 | 71.591 | 264 | 58 | 5 | 1 | 248 | 1 | 263 | 3.65e-120 | 343 |
MS.gene067297.t1 | AT2G46610 | 67.451 | 255 | 70 | 5 | 1 | 248 | 1 | 249 | 6.93e-110 | 317 |
MS.gene067297.t1 | AT2G46610 | 65.333 | 225 | 65 | 5 | 31 | 248 | 5 | 223 | 6.79e-90 | 265 |
MS.gene067297.t1 | AT2G46610 | 66.516 | 221 | 61 | 5 | 35 | 248 | 15 | 229 | 1.50e-89 | 265 |
MS.gene067297.t1 | AT2G46610 | 66.516 | 221 | 61 | 5 | 35 | 248 | 15 | 229 | 1.50e-89 | 265 |
MS.gene067297.t1 | AT4G25500 | 54.340 | 265 | 100 | 7 | 1 | 249 | 1 | 260 | 4.44e-79 | 242 |
MS.gene067297.t1 | AT4G25500 | 54.340 | 265 | 100 | 7 | 1 | 249 | 1 | 260 | 4.44e-79 | 242 |
MS.gene067297.t1 | AT5G52040 | 51.773 | 282 | 90 | 8 | 1 | 243 | 1 | 275 | 3.07e-74 | 230 |
MS.gene067297.t1 | AT5G52040 | 51.773 | 282 | 90 | 8 | 1 | 243 | 1 | 275 | 3.08e-74 | 230 |
MS.gene067297.t1 | AT4G25500 | 52.174 | 230 | 89 | 7 | 36 | 249 | 3 | 227 | 3.16e-58 | 187 |
MS.gene067297.t1 | AT4G25500 | 52.174 | 230 | 89 | 7 | 36 | 249 | 3 | 227 | 3.16e-58 | 187 |
MS.gene067297.t1 | AT4G25500 | 52.174 | 230 | 89 | 7 | 36 | 249 | 15 | 239 | 6.45e-58 | 187 |
MS.gene067297.t1 | AT4G25500 | 52.174 | 230 | 89 | 7 | 36 | 249 | 15 | 239 | 6.45e-58 | 187 |
MS.gene067297.t1 | AT4G25500 | 52.174 | 230 | 89 | 7 | 36 | 249 | 15 | 239 | 6.45e-58 | 187 |
MS.gene067297.t1 | AT4G25500 | 52.174 | 230 | 89 | 7 | 36 | 249 | 15 | 239 | 6.45e-58 | 187 |
MS.gene067297.t1 | AT5G52040 | 48.988 | 247 | 80 | 8 | 36 | 243 | 3 | 242 | 5.81e-53 | 174 |
MS.gene067297.t1 | AT5G52040 | 48.988 | 247 | 80 | 8 | 36 | 243 | 3 | 242 | 6.57e-53 | 174 |
MS.gene067297.t1 | AT5G52040 | 48.780 | 246 | 80 | 8 | 37 | 243 | 10 | 248 | 1.45e-51 | 171 |
MS.gene067297.t1 | AT5G52040 | 47.917 | 240 | 79 | 8 | 43 | 243 | 2 | 234 | 1.08e-47 | 160 |
MS.gene067297.t1 | AT5G52040 | 47.917 | 240 | 79 | 8 | 43 | 243 | 2 | 234 | 1.08e-47 | 160 |
MS.gene067297.t1 | AT1G02840 | 46.250 | 80 | 36 | 2 | 2 | 76 | 7 | 84 | 1.62e-12 | 66.2 |
MS.gene067297.t1 | AT1G02840 | 46.250 | 80 | 36 | 2 | 2 | 76 | 7 | 84 | 1.92e-12 | 65.9 |
MS.gene067297.t1 | AT1G02840 | 46.250 | 80 | 36 | 2 | 2 | 76 | 7 | 84 | 1.92e-12 | 65.9 |
MS.gene067297.t1 | AT1G02840 | 46.250 | 80 | 36 | 2 | 2 | 76 | 7 | 84 | 1.92e-12 | 65.9 |
MS.gene067297.t1 | AT1G02840 | 46.250 | 80 | 36 | 2 | 2 | 76 | 7 | 84 | 2.04e-12 | 65.9 |
MS.gene067297.t1 | AT4G02430 | 43.750 | 80 | 38 | 2 | 2 | 76 | 7 | 84 | 1.01e-11 | 62.4 |
MS.gene067297.t1 | AT2G43410 | 28.191 | 188 | 111 | 9 | 4 | 185 | 20 | 189 | 1.13e-11 | 64.7 |
MS.gene067297.t1 | AT2G43410 | 28.191 | 188 | 111 | 9 | 4 | 185 | 20 | 189 | 1.13e-11 | 64.7 |
MS.gene067297.t1 | AT2G43410 | 28.191 | 188 | 111 | 9 | 4 | 185 | 20 | 189 | 1.13e-11 | 64.7 |
MS.gene067297.t1 | AT2G43410 | 28.191 | 188 | 111 | 9 | 4 | 185 | 20 | 189 | 1.25e-11 | 64.7 |
MS.gene067297.t1 | AT2G43410 | 28.191 | 188 | 111 | 9 | 4 | 185 | 20 | 189 | 1.25e-11 | 64.7 |
MS.gene067297.t1 | AT3G53500 | 41.237 | 97 | 54 | 2 | 4 | 99 | 13 | 107 | 1.62e-11 | 63.2 |
MS.gene067297.t1 | AT2G37340 | 47.887 | 71 | 35 | 1 | 4 | 74 | 13 | 81 | 2.08e-11 | 63.2 |
MS.gene067297.t1 | AT4G02430 | 43.750 | 80 | 38 | 2 | 2 | 76 | 7 | 84 | 5.21e-11 | 61.6 |
MS.gene067297.t1 | AT4G02430 | 43.750 | 80 | 38 | 2 | 2 | 76 | 7 | 84 | 5.50e-11 | 62.0 |
Find 74 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGAGACACTTTAAACCTTA+TGG | 0.222757 | 8.2:-70775886 | MS.gene067297:CDS |
ATAGAGTCTTAGTGGGCTTC+TGG | 0.293503 | 8.2:+70775953 | None:intergenic |
CCTCATATTTGTACACTCTA+AGG | 0.314870 | 8.2:+70775789 | None:intergenic |
GTCTTAGTGGGCTTCTGGTT+TGG | 0.324442 | 8.2:+70775958 | None:intergenic |
CTGCGGTATCTGCCATATTC+AGG | 0.327516 | 8.2:+70775411 | None:intergenic |
GGCTATCTGTGGAGTGGGCT+AGG | 0.362539 | 8.2:-70776129 | MS.gene067297:CDS |
AGTGATAGGGTCGACAATTA+TGG | 0.367372 | 8.2:-70775615 | MS.gene067297:CDS |
AGGAATAGGAGTCCTGATTA+TGG | 0.387478 | 8.2:-70775447 | MS.gene067297:CDS |
CTGCGAGGACGGCCATAGTC+TGG | 0.389500 | 8.2:+70775525 | None:intergenic |
CTCCTATTCCTGCCATAATC+AGG | 0.390777 | 8.2:+70775459 | None:intergenic |
TCCAAATTTCCAGCGAAAAC+CGG | 0.392892 | 8.2:+70777561 | None:intergenic |
TTGCTCTTGCAGTAAGATAC+TGG | 0.395107 | 8.2:-70775676 | MS.gene067297:intron |
CTCTGAGGGATGATAGTGAT+AGG | 0.396401 | 8.2:-70775629 | MS.gene067297:CDS |
AGGCGGAGGAGTCCTGATTA+TGG | 0.398474 | 8.2:-70775471 | MS.gene067297:CDS |
AGAGACACTTTAAACCTTAT+GGG | 0.400181 | 8.2:-70775885 | MS.gene067297:CDS |
GCGCTTGACAATATTCCATT+TGG | 0.401690 | 8.2:-70776166 | MS.gene067297:CDS |
CTCCTGTTCCTGCCATAATC+AGG | 0.406180 | 8.2:+70775435 | None:intergenic |
AGGAACAGGAGTCCTGAATA+TGG | 0.409716 | 8.2:-70775423 | MS.gene067297:CDS |
CTTGGTCGCCTGCGATAACC+TGG | 0.421728 | 8.2:+70775549 | None:intergenic |
CACTAACTCTAGTGCGAATC+GGG | 0.422545 | 8.2:+70775914 | None:intergenic |
TCAGGACTCCTCCGCCTGTC+CGG | 0.438117 | 8.2:+70775477 | None:intergenic |
TCACTAACTCTAGTGCGAAT+CGG | 0.446534 | 8.2:+70775913 | None:intergenic |
GAACGCGTTGACATGAAATC+TGG | 0.450398 | 8.2:-70777483 | MS.gene067297:intron |
AATCACAAATAGAGTCTTAG+TGG | 0.463155 | 8.2:+70775945 | None:intergenic |
GTCCTGATTATGGCAGGAAC+AGG | 0.465754 | 8.2:-70775437 | MS.gene067297:CDS |
TCGCCTGCGATAACCTGGAC+TGG | 0.471164 | 8.2:+70775554 | None:intergenic |
ACATGATGAAGCGGCCCATA+AGG | 0.474793 | 8.2:+70775871 | None:intergenic |
CGCCTGCGATAACCTGGACT+GGG | 0.476215 | 8.2:+70775555 | None:intergenic |
AGGCGACCAAGTCCAGACTA+TGG | 0.483060 | 8.2:-70775537 | MS.gene067297:CDS |
GTCTGTGGAGTATGCTCTGA+GGG | 0.501476 | 8.2:-70775643 | MS.gene067297:CDS |
GTCCTGATTATGGCAGGAAT+AGG | 0.505340 | 8.2:-70775461 | MS.gene067297:CDS |
CTCGCAGTCCTGTGTATGAT+AGG | 0.516707 | 8.2:-70775509 | MS.gene067297:CDS |
GGCAGTCCCAGAAGAGGAGG+GGG | 0.518717 | 8.2:-70775591 | MS.gene067297:CDS |
GGACGGCCATAGTCTGGACT+TGG | 0.533541 | 8.2:+70775531 | None:intergenic |
CTTGCTAGATCTCCCAGTCC+AGG | 0.540800 | 8.2:-70775567 | MS.gene067297:CDS |
CTTGCAGTAAGATACTGGAT+AGG | 0.543043 | 8.2:-70775671 | MS.gene067297:intron |
CCTTAGAGTGTACAAATATG+AGG | 0.549055 | 8.2:-70775789 | MS.gene067297:intron |
GAACGTGGGCGTCACCGTGA+TGG | 0.553136 | 8.2:-70775988 | MS.gene067297:CDS |
CGTCGCTTGTCATAACCAAA+TGG | 0.554953 | 8.2:+70776151 | None:intergenic |
GCTATCTGTGGAGTGGGCTA+GGG | 0.556063 | 8.2:-70776128 | MS.gene067297:intron |
CTCCCAGTCCAGGTTATCGC+AGG | 0.556272 | 8.2:-70775557 | MS.gene067297:CDS |
CCTGTGTATGATAGGTATAG+TGG | 0.556286 | 8.2:-70775501 | MS.gene067297:CDS |
CTGAATATGGCAGATACCGC+AGG | 0.560299 | 8.2:-70775410 | MS.gene067297:intron |
TTGCAGTAAGATACTGGATA+GGG | 0.567226 | 8.2:-70775670 | MS.gene067297:intron |
GGAGGAGTCCTGATTATGGC+AGG | 0.568022 | 8.2:-70775467 | MS.gene067297:CDS |
GGTGGCAGTCCCAGAAGAGG+AGG | 0.570458 | 8.2:-70775594 | MS.gene067297:CDS |
ATAGGAGTCCTGATTATGGC+AGG | 0.570791 | 8.2:-70775443 | MS.gene067297:CDS |
CATACACAGGACTGCGAGGA+CGG | 0.574443 | 8.2:+70775514 | None:intergenic |
GGTTTGGCTTTGAGCCATCA+CGG | 0.574706 | 8.2:+70775974 | None:intergenic |
ACTGGATAGGGTGGTGTCTG+TGG | 0.574929 | 8.2:-70775658 | MS.gene067297:CDS |
TAAGTTCTTGACCTTCGCAC+TGG | 0.577328 | 8.2:+70775298 | None:intergenic |
TTCATCATGTTCGAATTCGT+CGG | 0.579765 | 8.2:-70775858 | MS.gene067297:CDS |
TGAAGGAGGAAAGATGAGGC+CGG | 0.580481 | 8.2:-70777580 | None:intergenic |
GTGGCAGTCCCAGAAGAGGA+GGG | 0.580855 | 8.2:-70775593 | MS.gene067297:CDS |
CGAATTCGAACATGATGAAG+CGG | 0.587916 | 8.2:+70775862 | None:intergenic |
ATCACAAATAGAGTCTTAGT+GGG | 0.592629 | 8.2:+70775946 | None:intergenic |
GCGACGGCTATCTGTGGAGT+GGG | 0.593866 | 8.2:-70776134 | MS.gene067297:CDS |
ATAGGTATAGTGGACCGGAC+AGG | 0.595852 | 8.2:-70775491 | MS.gene067297:CDS |
GTATGATAGGTATAGTGGAC+CGG | 0.598217 | 8.2:-70775496 | MS.gene067297:CDS |
ATAGTGGACCGGACAGGCGG+AGG | 0.599511 | 8.2:-70775485 | MS.gene067297:CDS |
TGGCAGTCCCAGAAGAGGAG+GGG | 0.613456 | 8.2:-70775592 | MS.gene067297:CDS |
TCTGAGGGATGATAGTGATA+GGG | 0.620938 | 8.2:-70775628 | MS.gene067297:CDS |
TGACAAGCGACGGCTATCTG+TGG | 0.625155 | 8.2:-70776140 | MS.gene067297:CDS |
CAGTAAGATACTGGATAGGG+TGG | 0.630521 | 8.2:-70775667 | MS.gene067297:CDS |
AGCGACGGCTATCTGTGGAG+TGG | 0.634117 | 8.2:-70776135 | MS.gene067297:CDS |
ATTTGTGCAGTATGAAACAC+AGG | 0.636540 | 8.2:-70775827 | MS.gene067297:CDS |
ACAGTCGTTCACCAGTGCGA+AGG | 0.644913 | 8.2:-70775309 | MS.gene067297:intron |
TATGGTGGCAGTCCCAGAAG+AGG | 0.645974 | 8.2:-70775597 | MS.gene067297:CDS |
CATTTGGTTATGACAAGCGA+CGG | 0.649124 | 8.2:-70776150 | MS.gene067297:CDS |
CCACTATACCTATCATACAC+AGG | 0.654929 | 8.2:+70775501 | None:intergenic |
GGTATAGTGGACCGGACAGG+CGG | 0.664021 | 8.2:-70775488 | MS.gene067297:CDS |
TGTCTGTGGAGTATGCTCTG+AGG | 0.665943 | 8.2:-70775644 | MS.gene067297:CDS |
GATAGGGTCGACAATTATGG+TGG | 0.674418 | 8.2:-70775612 | MS.gene067297:CDS |
CTATCATACACAGGACTGCG+AGG | 0.693506 | 8.2:+70775510 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACAAAATAAATCATAAAACT+TGG | + | chr8.2:70775572-70775591 | None:intergenic | 15.0% |
!! | AGAAAAACTTAAAAAACCAA+AGG | + | chr8.2:70776062-70776081 | None:intergenic | 20.0% |
!! | AGAATAAATAAGTCGAAAAA+AGG | + | chr8.2:70777524-70777543 | None:intergenic | 20.0% |
!!! | AACAATGAATTTTTTAGTGT+TGG | - | chr8.2:70775636-70775655 | MS.gene067297:CDS | 20.0% |
!!! | TAAGTGATTTGTTTTCATTT+TGG | - | chr8.2:70776847-70776866 | MS.gene067297:intron | 20.0% |
! | AAAAAAAAATTTGCAGAGGT+TGG | + | chr8.2:70776140-70776159 | None:intergenic | 25.0% |
! | AAGAGATTTCAGAAATAGAA+GGG | + | chr8.2:70776356-70776375 | None:intergenic | 25.0% |
! | AAGGTTTAAATCCAAAATTC+AGG | + | chr8.2:70776424-70776443 | None:intergenic | 25.0% |
! | CATGTTAAATTAAGAAACTC+AGG | + | chr8.2:70777143-70777162 | None:intergenic | 25.0% |
! | CTTAAGTTCATATTATTCTC+AGG | + | chr8.2:70776831-70776850 | None:intergenic | 25.0% |
! | TTCCAAAAAAAAATTTGCAG+AGG | + | chr8.2:70776144-70776163 | None:intergenic | 25.0% |
!!! | AAACCAAAGGATTTTTTCAA+AGG | + | chr8.2:70776049-70776068 | None:intergenic | 25.0% |
!!! | AACCTCTGCAAATTTTTTTT+TGG | - | chr8.2:70776139-70776158 | MS.gene067297:CDS | 25.0% |
!!! | CAAATCATGATTGCTTTTAA+AGG | + | chr8.2:70776443-70776462 | None:intergenic | 25.0% |
AATCACAAATAGAGTCTTAG+TGG | + | chr8.2:70776922-70776941 | None:intergenic | 30.0% | |
AGAGACACTTTAAACCTTAT+GGG | - | chr8.2:70776979-70776998 | MS.gene067297:intron | 30.0% | |
AGTTGTAGTTTATGGTATGA+GGG | - | chr8.2:70775710-70775729 | MS.gene067297:intron | 30.0% | |
ATCACAAATAGAGTCTTAGT+GGG | + | chr8.2:70776921-70776940 | None:intergenic | 30.0% | |
CAAGAGATTTCAGAAATAGA+AGG | + | chr8.2:70776357-70776376 | None:intergenic | 30.0% | |
! | ATGCCTTTGAAAAAATCCTT+TGG | - | chr8.2:70776043-70776062 | MS.gene067297:intron | 30.0% |
! | GAAAATCGAGTTGTAGTTTA+TGG | - | chr8.2:70775702-70775721 | MS.gene067297:intron | 30.0% |
! | TTAAGTTTTTCTTTTGACGC+AGG | - | chr8.2:70776070-70776089 | MS.gene067297:intron | 30.0% |
!! | ATTCTAGCTTAACCCTTAAT+TGG | - | chr8.2:70775504-70775523 | MS.gene067297:CDS | 30.0% |
!! | GATTTGTTTTCATTTTGGCA+GGG | - | chr8.2:70776852-70776871 | MS.gene067297:intron | 30.0% |
!! | TTCTAGCTTAACCCTTAATT+GGG | - | chr8.2:70775505-70775524 | MS.gene067297:CDS | 30.0% |
!!! | TCTAATTTCAGTTTTGTTGC+AGG | - | chr8.2:70776623-70776642 | MS.gene067297:intron | 30.0% |
!!! | TGATTTGTTTTCATTTTGGC+AGG | - | chr8.2:70776851-70776870 | MS.gene067297:intron | 30.0% |
ACAACACCTGAATATAAGTG+TGG | + | chr8.2:70776506-70776525 | None:intergenic | 35.0% | |
AGTTCATATTATTCTCAGGC+AGG | + | chr8.2:70776827-70776846 | None:intergenic | 35.0% | |
ATAACATAGTGCCCCAATTA+AGG | + | chr8.2:70775520-70775539 | None:intergenic | 35.0% | |
ATCAGTCCACACTTATATTC+AGG | - | chr8.2:70776497-70776516 | MS.gene067297:intron | 35.0% | |
ATTTGTGCAGTATGAAACAC+AGG | - | chr8.2:70777037-70777056 | MS.gene067297:intron | 35.0% | |
CAATCAGAACTGATCTTAGA+GGG | - | chr8.2:70776256-70776275 | MS.gene067297:intron | 35.0% | |
CAGGATTATAGCCTAAGATA+TGG | + | chr8.2:70777124-70777143 | None:intergenic | 35.0% | |
CCTCATATTTGTACACTCTA+AGG | + | chr8.2:70777078-70777097 | None:intergenic | 35.0% | |
CCTTAGAGTGTACAAATATG+AGG | - | chr8.2:70777075-70777094 | MS.gene067297:intron | 35.0% | |
CTATTGTAAACTAGACCCTA+GGG | - | chr8.2:70775742-70775761 | MS.gene067297:intron | 35.0% | |
GACTTCAAATACAATACCTG+CGG | + | chr8.2:70777473-70777492 | None:intergenic | 35.0% | |
GAGAGACACTTTAAACCTTA+TGG | - | chr8.2:70776978-70776997 | MS.gene067297:intron | 35.0% | |
GAGTATGTGAATTGAGAAAG+AGG | + | chr8.2:70775415-70775434 | None:intergenic | 35.0% | |
GAGTTGTAGTTTATGGTATG+AGG | - | chr8.2:70775709-70775728 | MS.gene067297:intron | 35.0% | |
GTACTTTAGCGATCATGTTA+TGG | - | chr8.2:70776765-70776784 | MS.gene067297:intron | 35.0% | |
GTATTCCTTTGTTCCTAACA+GGG | - | chr8.2:70776524-70776543 | MS.gene067297:intron | 35.0% | |
TAACAGGGAAAATGATTTCC+TGG | - | chr8.2:70776539-70776558 | MS.gene067297:intron | 35.0% | |
TAACATAGTGCCCCAATTAA+GGG | + | chr8.2:70775519-70775538 | None:intergenic | 35.0% | |
TCAATCAGAACTGATCTTAG+AGG | - | chr8.2:70776255-70776274 | MS.gene067297:intron | 35.0% | |
TGATGAGATTGCCATATCTT+AGG | - | chr8.2:70777110-70777129 | MS.gene067297:intron | 35.0% | |
TGTATTCCTTTGTTCCTAAC+AGG | - | chr8.2:70776523-70776542 | MS.gene067297:intron | 35.0% | |
TTCATCATGTTCGAATTCGT+CGG | - | chr8.2:70777006-70777025 | MS.gene067297:intron | 35.0% | |
TTGCAGTAAGATACTGGATA+GGG | - | chr8.2:70777194-70777213 | MS.gene067297:intron | 35.0% | |
! | ACAATCTCAGACCTGAATTT+TGG | - | chr8.2:70776410-70776429 | MS.gene067297:intron | 35.0% |
! | AGGAAATCATTTTCCCTGTT+AGG | + | chr8.2:70776540-70776559 | None:intergenic | 35.0% |
! | ATTTTCCCTGTTAGGAACAA+AGG | + | chr8.2:70776532-70776551 | None:intergenic | 35.0% |
! | TCTAGCTTAACCCTTAATTG+GGG | - | chr8.2:70775506-70775525 | MS.gene067297:CDS | 35.0% |
!! | GAACGCTTGTTTTCAAAGTA+TGG | - | chr8.2:70775351-70775370 | MS.gene067297:intron | 35.0% |
AATATGCTGAGCATCTGTCT+TGG | - | chr8.2:70776110-70776129 | MS.gene067297:intron | 40.0% | |
AATCTCTTGTGCTGTCTGAA+TGG | - | chr8.2:70776368-70776387 | MS.gene067297:intron | 40.0% | |
ACCCACAATGACACAAATTG+GGG | + | chr8.2:70775604-70775623 | None:intergenic | 40.0% | |
AGAAAATGCAGATCTGTGGA+TGG | + | chr8.2:70776187-70776206 | None:intergenic | 40.0% | |
AGACCCACAATGACACAAAT+TGG | + | chr8.2:70775606-70775625 | None:intergenic | 40.0% | |
AGGAATAGGAGTCCTGATTA+TGG | - | chr8.2:70777417-70777436 | MS.gene067297:intron | 40.0% | |
AGTGATAGGGTCGACAATTA+TGG | - | chr8.2:70777249-70777268 | MS.gene067297:intron | 40.0% | |
ATCCAAATTCCAGAACATGG+TGG | + | chr8.2:70775777-70775796 | None:intergenic | 40.0% | |
CATTTGGTTATGACAAGCGA+CGG | - | chr8.2:70776714-70776733 | MS.gene067297:intron | 40.0% | |
CCACTATACCTATCATACAC+AGG | + | chr8.2:70777366-70777385 | None:intergenic | 40.0% | |
CCTATCCAAATTCCAGAACA+TGG | + | chr8.2:70775780-70775799 | None:intergenic | 40.0% | |
CCTGTGTATGATAGGTATAG+TGG | - | chr8.2:70777363-70777382 | MS.gene067297:intron | 40.0% | |
CGAATTCGAACATGATGAAG+CGG | + | chr8.2:70777005-70777024 | None:intergenic | 40.0% | |
CTGGCAGTGTTGTCAAATAT+CGG | - | chr8.2:70775837-70775856 | MS.gene067297:CDS | 40.0% | |
CTTGCAGTAAGATACTGGAT+AGG | - | chr8.2:70777193-70777212 | MS.gene067297:intron | 40.0% | |
GACCCACAATGACACAAATT+GGG | + | chr8.2:70775605-70775624 | None:intergenic | 40.0% | |
GATGAGAAAATGCAGATCTG+TGG | + | chr8.2:70776191-70776210 | None:intergenic | 40.0% | |
GCGCTTGACAATATTCCATT+TGG | - | chr8.2:70776698-70776717 | MS.gene067297:intron | 40.0% | |
GCTATTGTAAACTAGACCCT+AGG | - | chr8.2:70775741-70775760 | MS.gene067297:intron | 40.0% | |
GGGAAAATGATTTCCTGGTT+TGG | - | chr8.2:70776544-70776563 | MS.gene067297:intron | 40.0% | |
TCACTAACTCTAGTGCGAAT+CGG | + | chr8.2:70776954-70776973 | None:intergenic | 40.0% | |
TCCAAATTTCCAGCGAAAAC+CGG | + | chr8.2:70775306-70775325 | None:intergenic | 40.0% | |
TCTGAATGGAGAATCATGCT+TGG | - | chr8.2:70776382-70776401 | MS.gene067297:intron | 40.0% | |
TGGAATTTGGATAGGAGTGA+TGG | - | chr8.2:70775785-70775804 | MS.gene067297:intron | 40.0% | |
TGTCATTGTGGGTCTAAGAA+CGG | - | chr8.2:70775611-70775630 | MS.gene067297:CDS | 40.0% | |
TGTCCCGATGGAAAAAGAAA+CGG | - | chr8.2:70776004-70776023 | MS.gene067297:intron | 40.0% | |
TTATGGTATGAGGGTGATGT+AGG | - | chr8.2:70775719-70775738 | MS.gene067297:intron | 40.0% | |
TTGCTCTTGCAGTAAGATAC+TGG | - | chr8.2:70777188-70777207 | MS.gene067297:intron | 40.0% | |
! | ACCCCAATTTGTGTCATTGT+GGG | - | chr8.2:70775600-70775619 | MS.gene067297:CDS | 40.0% |
! | TACCCCAATTTGTGTCATTG+TGG | - | chr8.2:70775599-70775618 | MS.gene067297:CDS | 40.0% |
! | TCTGAGGGATGATAGTGATA+GGG | - | chr8.2:70777236-70777255 | MS.gene067297:intron | 40.0% |
! | TTCTTTTTCCATCGGGACAT+AGG | + | chr8.2:70776003-70776022 | None:intergenic | 40.0% |
!! | AACCACCATGTTCTGGAATT+TGG | - | chr8.2:70775772-70775791 | MS.gene067297:intron | 40.0% |
!! | CCATGTTCTGGAATTTGGAT+AGG | - | chr8.2:70775777-70775796 | MS.gene067297:intron | 40.0% |
!! | GTATGATAGGTATAGTGGAC+CGG | - | chr8.2:70777368-70777387 | MS.gene067297:intron | 40.0% |
!! | TCTGCCGTTTCTTTTTCCAT+CGG | + | chr8.2:70776011-70776030 | None:intergenic | 40.0% |
ACCACCATATCTGAGTATGG+GGG | + | chr8.2:70775916-70775935 | None:intergenic | 45.0% | |
AGGAACAGGAGTCCTGAATA+TGG | - | chr8.2:70777441-70777460 | MS.gene067297:intron | 45.0% | |
ATAGGAGTCCTGATTATGGC+AGG | - | chr8.2:70777421-70777440 | MS.gene067297:intron | 45.0% | |
ATGCAGATCTGTGGATGGAA+AGG | + | chr8.2:70776182-70776201 | None:intergenic | 45.0% | |
ATGTTCAGTGAAGCTAGGCA+TGG | + | chr8.2:70776303-70776322 | None:intergenic | 45.0% | |
CACCACCATATCTGAGTATG+GGG | + | chr8.2:70775917-70775936 | None:intergenic | 45.0% | |
CACTAACTCTAGTGCGAATC+GGG | + | chr8.2:70776953-70776972 | None:intergenic | 45.0% | |
CAGTAAGATACTGGATAGGG+TGG | - | chr8.2:70777197-70777216 | MS.gene067297:intron | 45.0% | |
CCTAGCTTCACTGAACATAG+GGG | - | chr8.2:70776305-70776324 | MS.gene067297:intron | 45.0% | |
CGTCGCTTGTCATAACCAAA+TGG | + | chr8.2:70776716-70776735 | None:intergenic | 45.0% | |
CTAGACATCAGTGTTGTCGA+TGG | + | chr8.2:70775978-70775997 | None:intergenic | 45.0% | |
CTCCTATTCCTGCCATAATC+AGG | + | chr8.2:70777408-70777427 | None:intergenic | 45.0% | |
GACGCAGGAACTTCTACTAA+GGG | - | chr8.2:70776085-70776104 | MS.gene067297:intron | 45.0% | |
GAGCCAACAATCTGATATGC+TGG | + | chr8.2:70775951-70775970 | None:intergenic | 45.0% | |
GATAGGGTCGACAATTATGG+TGG | - | chr8.2:70777252-70777271 | MS.gene067297:intron | 45.0% | |
GCACCACCATATCTGAGTAT+GGG | + | chr8.2:70775918-70775937 | None:intergenic | 45.0% | |
GCCTAGCTTCACTGAACATA+GGG | - | chr8.2:70776304-70776323 | MS.gene067297:intron | 45.0% | |
GTCCTGATTATGGCAGGAAT+AGG | - | chr8.2:70777403-70777422 | MS.gene067297:intron | 45.0% | |
GTGTTGTCAAATATCGGCCA+TGG | - | chr8.2:70775843-70775862 | MS.gene067297:CDS | 45.0% | |
TAAGTTCTTGACCTTCGCAC+TGG | + | chr8.2:70777569-70777588 | None:intergenic | 45.0% | |
TGACGCAGGAACTTCTACTA+AGG | - | chr8.2:70776084-70776103 | MS.gene067297:intron | 45.0% | |
TGATGCACATGAAGCTGTAG+AGG | + | chr8.2:70776481-70776500 | None:intergenic | 45.0% | |
TGCAGATCTGTGGATGGAAA+GGG | + | chr8.2:70776181-70776200 | None:intergenic | 45.0% | |
TGCCTAGCTTCACTGAACAT+AGG | - | chr8.2:70776303-70776322 | MS.gene067297:intron | 45.0% | |
TGGCCAGCATATCAGATTGT+TGG | - | chr8.2:70775945-70775964 | MS.gene067297:CDS | 45.0% | |
TGTGAAGTTCGTGTGTCAGT+TGG | - | chr8.2:70775677-70775696 | MS.gene067297:intron | 45.0% | |
TTGTCAAATATCGGCCATGG+CGG | - | chr8.2:70775846-70775865 | MS.gene067297:CDS | 45.0% | |
! | CTCTGAGGGATGATAGTGAT+AGG | - | chr8.2:70777235-70777254 | MS.gene067297:intron | 45.0% |
! | GAACGCGTTGACATGAAATC+TGG | - | chr8.2:70775381-70775400 | MS.gene067297:intron | 45.0% |
! | TTGGCTGATGTACTTGGTGA+GGG | - | chr8.2:70776563-70776582 | MS.gene067297:intron | 45.0% |
! | TTTGGCTGATGTACTTGGTG+AGG | - | chr8.2:70776562-70776581 | MS.gene067297:intron | 45.0% |
!! | AGCTGTAGAGGTGTTGAATG+TGG | + | chr8.2:70776469-70776488 | None:intergenic | 45.0% |
!! | ATAGAGTCTTAGTGGGCTTC+TGG | + | chr8.2:70776914-70776933 | None:intergenic | 45.0% |
!! | CTGCCGTTTCTTTTTCCATC+GGG | + | chr8.2:70776010-70776029 | None:intergenic | 45.0% |
!! | GGATATTGGTTGTGGGGTTT+TGG | - | chr8.2:70775867-70775886 | MS.gene067297:CDS | 45.0% |
AACGCCCCCATACTCAGATA+TGG | - | chr8.2:70775909-70775928 | MS.gene067297:CDS | 50.0% | |
ACATGATGAAGCGGCCCATA+AGG | + | chr8.2:70776996-70777015 | None:intergenic | 50.0% | |
ATCTGTGGATGGAAAGGGAG+CGG | + | chr8.2:70776176-70776195 | None:intergenic | 50.0% | |
CCAAGTACATCAGCCAAACC+AGG | + | chr8.2:70776560-70776579 | None:intergenic | 50.0% | |
CCCCTATGTTCAGTGAAGCT+AGG | + | chr8.2:70776308-70776327 | None:intergenic | 50.0% | |
CTATCATACACAGGACTGCG+AGG | + | chr8.2:70777357-70777376 | None:intergenic | 50.0% | |
CTCCTGTTCCTGCCATAATC+AGG | + | chr8.2:70777432-70777451 | None:intergenic | 50.0% | |
CTCGCAGTCCTGTGTATGAT+AGG | - | chr8.2:70777355-70777374 | MS.gene067297:intron | 50.0% | |
CTGAATATGGCAGATACCGC+AGG | - | chr8.2:70777454-70777473 | MS.gene067297:intron | 50.0% | |
CTGATATGCTGGCCAGCATA+TGG | + | chr8.2:70775940-70775959 | None:intergenic | 50.0% | |
CTGCGGTATCTGCCATATTC+AGG | + | chr8.2:70777456-70777475 | None:intergenic | 50.0% | |
GAAGTTCGTGTGTCAGTTGG+CGG | - | chr8.2:70775680-70775699 | MS.gene067297:intron | 50.0% | |
GGCACCACCATATCTGAGTA+TGG | + | chr8.2:70775919-70775938 | None:intergenic | 50.0% | |
GTCCTGATTATGGCAGGAAC+AGG | - | chr8.2:70777427-70777446 | MS.gene067297:intron | 50.0% | |
GTCTGTGGAGTATGCTCTGA+GGG | - | chr8.2:70777221-70777240 | MS.gene067297:intron | 50.0% | |
TACTGCGAACCACCATGTTC+TGG | - | chr8.2:70775765-70775784 | MS.gene067297:intron | 50.0% | |
TGTCTGTGGAGTATGCTCTG+AGG | - | chr8.2:70777220-70777239 | MS.gene067297:intron | 50.0% | |
! | GTCTAGTTCCTATGTCCCGA+TGG | - | chr8.2:70775992-70776011 | MS.gene067297:CDS | 50.0% |
!! | ATAGGTATAGTGGACCGGAC+AGG | - | chr8.2:70777373-70777392 | MS.gene067297:intron | 50.0% |
!! | ATATCGGCCATGGCGGATAT+TGG | - | chr8.2:70775853-70775872 | MS.gene067297:CDS | 50.0% |
!! | CATGGCGGATATTGGTTGTG+GGG | - | chr8.2:70775861-70775880 | MS.gene067297:CDS | 50.0% |
!! | CATTTTGGCAGGGTGAACGT+GGG | - | chr8.2:70776862-70776881 | MS.gene067297:intron | 50.0% |
!! | CCATGGCGGATATTGGTTGT+GGG | - | chr8.2:70775860-70775879 | MS.gene067297:CDS | 50.0% |
!! | CCTGGTTTGGCTGATGTACT+TGG | - | chr8.2:70776557-70776576 | MS.gene067297:intron | 50.0% |
!! | GATATGGTGGTGCCATATGC+TGG | - | chr8.2:70775925-70775944 | MS.gene067297:CDS | 50.0% |
!! | GCCGGTTTTCGCTGGAAATT+TGG | - | chr8.2:70775302-70775321 | MS.gene067297:CDS | 50.0% |
!! | GGATAGGAGTGATGGACATG+AGG | - | chr8.2:70775793-70775812 | MS.gene067297:CDS | 50.0% |
!! | GGTTTGGCTTTGAGCCATCA+CGG | + | chr8.2:70776893-70776912 | None:intergenic | 50.0% |
!! | GTCTTAGTGGGCTTCTGGTT+TGG | + | chr8.2:70776909-70776928 | None:intergenic | 50.0% |
!! | TCATTTTGGCAGGGTGAACG+TGG | - | chr8.2:70776861-70776880 | MS.gene067297:intron | 50.0% |
!!! | ATGAGGCTGCTTTTGTGGCT+CGG | - | chr8.2:70775810-70775829 | MS.gene067297:CDS | 50.0% |
!!! | TGGACATGAGGCTGCTTTTG+TGG | - | chr8.2:70775805-70775824 | MS.gene067297:CDS | 50.0% |
ACAGTCGTTCACCAGTGCGA+AGG | - | chr8.2:70777555-70777574 | MS.gene067297:CDS | 55.0% | |
ACTGGATAGGGTGGTGTCTG+TGG | - | chr8.2:70777206-70777225 | MS.gene067297:intron | 55.0% | |
AGGCGACCAAGTCCAGACTA+TGG | - | chr8.2:70777327-70777346 | MS.gene067297:intron | 55.0% | |
AGGCGGAGGAGTCCTGATTA+TGG | - | chr8.2:70777393-70777412 | MS.gene067297:intron | 55.0% | |
ATGGTGGTTCGCAGTACCCT+AGG | + | chr8.2:70775761-70775780 | None:intergenic | 55.0% | |
CATACACAGGACTGCGAGGA+CGG | + | chr8.2:70777353-70777372 | None:intergenic | 55.0% | |
CCCACAACCAATATCCGCCA+TGG | + | chr8.2:70775863-70775882 | None:intergenic | 55.0% | |
CTTGCTAGATCTCCCAGTCC+AGG | - | chr8.2:70777297-70777316 | MS.gene067297:intron | 55.0% | |
GCCCCCATACTCAGATATGG+TGG | - | chr8.2:70775912-70775931 | MS.gene067297:CDS | 55.0% | |
GGAGGAGTCCTGATTATGGC+AGG | - | chr8.2:70777397-70777416 | MS.gene067297:intron | 55.0% | |
TATGGTGGCAGTCCCAGAAG+AGG | - | chr8.2:70777267-70777286 | MS.gene067297:intron | 55.0% | |
TGACAAGCGACGGCTATCTG+TGG | - | chr8.2:70776724-70776743 | MS.gene067297:intron | 55.0% | |
TGGTGGTTCGCAGTACCCTA+GGG | + | chr8.2:70775760-70775779 | None:intergenic | 55.0% | |
!! | GCCATGGCGGATATTGGTTG+TGG | - | chr8.2:70775859-70775878 | MS.gene067297:CDS | 55.0% |
!! | GCTATCTGTGGAGTGGGCTA+GGG | - | chr8.2:70776736-70776755 | MS.gene067297:intron | 55.0% |
!! | GCTTTTGTGGCTCGGATGTC+TGG | - | chr8.2:70775818-70775837 | MS.gene067297:CDS | 55.0% |
AGCAAGACCCCCTCCTCTTC+TGG | + | chr8.2:70777283-70777302 | None:intergenic | 60.0% | |
AGCGACGGCTATCTGTGGAG+TGG | - | chr8.2:70776729-70776748 | MS.gene067297:intron | 60.0% | |
CGCCTGCGATAACCTGGACT+GGG | + | chr8.2:70777312-70777331 | None:intergenic | 60.0% | |
CTCCCAGTCCAGGTTATCGC+AGG | - | chr8.2:70777307-70777326 | MS.gene067297:intron | 60.0% | |
CTTGGTCGCCTGCGATAACC+TGG | + | chr8.2:70777318-70777337 | None:intergenic | 60.0% | |
GCAAGACCCCCTCCTCTTCT+GGG | + | chr8.2:70777282-70777301 | None:intergenic | 60.0% | |
GCGACGGCTATCTGTGGAGT+GGG | - | chr8.2:70776730-70776749 | MS.gene067297:intron | 60.0% | |
GGACGGCCATAGTCTGGACT+TGG | + | chr8.2:70777336-70777355 | None:intergenic | 60.0% | |
GTGGATGGAAAGGGAGCGGA+AGG | + | chr8.2:70776172-70776191 | None:intergenic | 60.0% | |
GTGGCAGTCCCAGAAGAGGA+GGG | - | chr8.2:70777271-70777290 | MS.gene067297:intron | 60.0% | |
TCGCCTGCGATAACCTGGAC+TGG | + | chr8.2:70777313-70777332 | None:intergenic | 60.0% | |
TGGCAGTCCCAGAAGAGGAG+GGG | - | chr8.2:70777272-70777291 | MS.gene067297:intron | 60.0% | |
! | GGCTATCTGTGGAGTGGGCT+AGG | - | chr8.2:70776735-70776754 | MS.gene067297:intron | 60.0% |
!! | GGTATAGTGGACCGGACAGG+CGG | - | chr8.2:70777376-70777395 | MS.gene067297:intron | 60.0% |
!!! | GGGGTTTTGGCTTTCCGCCA+TGG | - | chr8.2:70775880-70775899 | MS.gene067297:CDS | 60.0% |
CTGCGAGGACGGCCATAGTC+TGG | + | chr8.2:70777342-70777361 | None:intergenic | 65.0% | |
GAACGTGGGCGTCACCGTGA+TGG | - | chr8.2:70776876-70776895 | MS.gene067297:intron | 65.0% | |
GGCAGTCCCAGAAGAGGAGG+GGG | - | chr8.2:70777273-70777292 | MS.gene067297:intron | 65.0% | |
GGTGGCAGTCCCAGAAGAGG+AGG | - | chr8.2:70777270-70777289 | MS.gene067297:intron | 65.0% | |
TCAGGACTCCTCCGCCTGTC+CGG | + | chr8.2:70777390-70777409 | None:intergenic | 65.0% | |
!! | ATAGTGGACCGGACAGGCGG+AGG | - | chr8.2:70777379-70777398 | MS.gene067297:intron | 65.0% |
!! | ATGGGGGCGTTGCATCGCCA+TGG | + | chr8.2:70775900-70775919 | None:intergenic | 65.0% |
!! | GGGGCGTTGCATCGCCATGG+CGG | + | chr8.2:70775897-70775916 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 70775297 | 70777589 | 70775297 | ID=MS.gene067297 |
chr8.2 | mRNA | 70775297 | 70777589 | 70775297 | ID=MS.gene067297.t1;Parent=MS.gene067297 |
chr8.2 | exon | 70777484 | 70777589 | 70777484 | ID=MS.gene067297.t1.exon1;Parent=MS.gene067297.t1 |
chr8.2 | CDS | 70777484 | 70777589 | 70777484 | ID=cds.MS.gene067297.t1;Parent=MS.gene067297.t1 |
chr8.2 | exon | 70776129 | 70776241 | 70776129 | ID=MS.gene067297.t1.exon2;Parent=MS.gene067297.t1 |
chr8.2 | CDS | 70776129 | 70776241 | 70776129 | ID=cds.MS.gene067297.t1;Parent=MS.gene067297.t1 |
chr8.2 | exon | 70775790 | 70776013 | 70775790 | ID=MS.gene067297.t1.exon3;Parent=MS.gene067297.t1 |
chr8.2 | CDS | 70775790 | 70776013 | 70775790 | ID=cds.MS.gene067297.t1;Parent=MS.gene067297.t1 |
chr8.2 | exon | 70775411 | 70775686 | 70775411 | ID=MS.gene067297.t1.exon4;Parent=MS.gene067297.t1 |
chr8.2 | CDS | 70775411 | 70775686 | 70775411 | ID=cds.MS.gene067297.t1;Parent=MS.gene067297.t1 |
chr8.2 | exon | 70775297 | 70775327 | 70775297 | ID=MS.gene067297.t1.exon5;Parent=MS.gene067297.t1 |
chr8.2 | CDS | 70775297 | 70775327 | 70775297 | ID=cds.MS.gene067297.t1;Parent=MS.gene067297.t1 |
Gene Sequence |
Protein sequence |