AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene067297


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067297.t1 MTR_8g027190 99.197 249 2 0 1 249 1 249 4.89e-180 494
MS.gene067297.t1 MTR_8g027190 98.157 217 4 0 33 249 19 235 1.30e-153 427
MS.gene067297.t1 MTR_8g027190 95.495 222 10 0 28 249 8 229 3.32e-153 426
MS.gene067297.t1 MTR_8g032590 54.373 263 88 4 1 243 1 251 4.01e-85 255
MS.gene067297.t1 MTR_1g101520 56.604 265 88 7 1 248 1 255 1.17e-79 244
MS.gene067297.t1 MTR_8g032590 52.402 229 77 4 35 243 24 240 1.32e-64 202
MS.gene067297.t1 MTR_8g032590 52.036 221 74 4 43 243 2 210 1.53e-59 189
MS.gene067297.t1 MTR_1g101520 55.157 223 73 7 43 248 2 214 6.62e-55 180
MS.gene067297.t1 MTR_8g058530 31.953 169 93 5 2 150 7 173 2.87e-14 71.2
MS.gene067297.t1 MTR_7g108810 32.716 162 87 5 2 143 108 267 1.12e-13 70.1
MS.gene067297.t1 MTR_1g083400 32.298 161 87 5 2 142 38 196 2.78e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067297.t1 AT3G61860 71.591 264 58 5 1 248 1 263 3.65e-120 343
MS.gene067297.t1 AT2G46610 67.451 255 70 5 1 248 1 249 6.93e-110 317
MS.gene067297.t1 AT2G46610 65.333 225 65 5 31 248 5 223 6.79e-90 265
MS.gene067297.t1 AT2G46610 66.516 221 61 5 35 248 15 229 1.50e-89 265
MS.gene067297.t1 AT2G46610 66.516 221 61 5 35 248 15 229 1.50e-89 265
MS.gene067297.t1 AT4G25500 54.340 265 100 7 1 249 1 260 4.44e-79 242
MS.gene067297.t1 AT4G25500 54.340 265 100 7 1 249 1 260 4.44e-79 242
MS.gene067297.t1 AT5G52040 51.773 282 90 8 1 243 1 275 3.07e-74 230
MS.gene067297.t1 AT5G52040 51.773 282 90 8 1 243 1 275 3.08e-74 230
MS.gene067297.t1 AT4G25500 52.174 230 89 7 36 249 3 227 3.16e-58 187
MS.gene067297.t1 AT4G25500 52.174 230 89 7 36 249 3 227 3.16e-58 187
MS.gene067297.t1 AT4G25500 52.174 230 89 7 36 249 15 239 6.45e-58 187
MS.gene067297.t1 AT4G25500 52.174 230 89 7 36 249 15 239 6.45e-58 187
MS.gene067297.t1 AT4G25500 52.174 230 89 7 36 249 15 239 6.45e-58 187
MS.gene067297.t1 AT4G25500 52.174 230 89 7 36 249 15 239 6.45e-58 187
MS.gene067297.t1 AT5G52040 48.988 247 80 8 36 243 3 242 5.81e-53 174
MS.gene067297.t1 AT5G52040 48.988 247 80 8 36 243 3 242 6.57e-53 174
MS.gene067297.t1 AT5G52040 48.780 246 80 8 37 243 10 248 1.45e-51 171
MS.gene067297.t1 AT5G52040 47.917 240 79 8 43 243 2 234 1.08e-47 160
MS.gene067297.t1 AT5G52040 47.917 240 79 8 43 243 2 234 1.08e-47 160
MS.gene067297.t1 AT1G02840 46.250 80 36 2 2 76 7 84 1.62e-12 66.2
MS.gene067297.t1 AT1G02840 46.250 80 36 2 2 76 7 84 1.92e-12 65.9
MS.gene067297.t1 AT1G02840 46.250 80 36 2 2 76 7 84 1.92e-12 65.9
MS.gene067297.t1 AT1G02840 46.250 80 36 2 2 76 7 84 1.92e-12 65.9
MS.gene067297.t1 AT1G02840 46.250 80 36 2 2 76 7 84 2.04e-12 65.9
MS.gene067297.t1 AT4G02430 43.750 80 38 2 2 76 7 84 1.01e-11 62.4
MS.gene067297.t1 AT2G43410 28.191 188 111 9 4 185 20 189 1.13e-11 64.7
MS.gene067297.t1 AT2G43410 28.191 188 111 9 4 185 20 189 1.13e-11 64.7
MS.gene067297.t1 AT2G43410 28.191 188 111 9 4 185 20 189 1.13e-11 64.7
MS.gene067297.t1 AT2G43410 28.191 188 111 9 4 185 20 189 1.25e-11 64.7
MS.gene067297.t1 AT2G43410 28.191 188 111 9 4 185 20 189 1.25e-11 64.7
MS.gene067297.t1 AT3G53500 41.237 97 54 2 4 99 13 107 1.62e-11 63.2
MS.gene067297.t1 AT2G37340 47.887 71 35 1 4 74 13 81 2.08e-11 63.2
MS.gene067297.t1 AT4G02430 43.750 80 38 2 2 76 7 84 5.21e-11 61.6
MS.gene067297.t1 AT4G02430 43.750 80 38 2 2 76 7 84 5.50e-11 62.0

Find 74 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAGACACTTTAAACCTTA+TGG 0.222757 8.2:-70775886 MS.gene067297:CDS
ATAGAGTCTTAGTGGGCTTC+TGG 0.293503 8.2:+70775953 None:intergenic
CCTCATATTTGTACACTCTA+AGG 0.314870 8.2:+70775789 None:intergenic
GTCTTAGTGGGCTTCTGGTT+TGG 0.324442 8.2:+70775958 None:intergenic
CTGCGGTATCTGCCATATTC+AGG 0.327516 8.2:+70775411 None:intergenic
GGCTATCTGTGGAGTGGGCT+AGG 0.362539 8.2:-70776129 MS.gene067297:CDS
AGTGATAGGGTCGACAATTA+TGG 0.367372 8.2:-70775615 MS.gene067297:CDS
AGGAATAGGAGTCCTGATTA+TGG 0.387478 8.2:-70775447 MS.gene067297:CDS
CTGCGAGGACGGCCATAGTC+TGG 0.389500 8.2:+70775525 None:intergenic
CTCCTATTCCTGCCATAATC+AGG 0.390777 8.2:+70775459 None:intergenic
TCCAAATTTCCAGCGAAAAC+CGG 0.392892 8.2:+70777561 None:intergenic
TTGCTCTTGCAGTAAGATAC+TGG 0.395107 8.2:-70775676 MS.gene067297:intron
CTCTGAGGGATGATAGTGAT+AGG 0.396401 8.2:-70775629 MS.gene067297:CDS
AGGCGGAGGAGTCCTGATTA+TGG 0.398474 8.2:-70775471 MS.gene067297:CDS
AGAGACACTTTAAACCTTAT+GGG 0.400181 8.2:-70775885 MS.gene067297:CDS
GCGCTTGACAATATTCCATT+TGG 0.401690 8.2:-70776166 MS.gene067297:CDS
CTCCTGTTCCTGCCATAATC+AGG 0.406180 8.2:+70775435 None:intergenic
AGGAACAGGAGTCCTGAATA+TGG 0.409716 8.2:-70775423 MS.gene067297:CDS
CTTGGTCGCCTGCGATAACC+TGG 0.421728 8.2:+70775549 None:intergenic
CACTAACTCTAGTGCGAATC+GGG 0.422545 8.2:+70775914 None:intergenic
TCAGGACTCCTCCGCCTGTC+CGG 0.438117 8.2:+70775477 None:intergenic
TCACTAACTCTAGTGCGAAT+CGG 0.446534 8.2:+70775913 None:intergenic
GAACGCGTTGACATGAAATC+TGG 0.450398 8.2:-70777483 MS.gene067297:intron
AATCACAAATAGAGTCTTAG+TGG 0.463155 8.2:+70775945 None:intergenic
GTCCTGATTATGGCAGGAAC+AGG 0.465754 8.2:-70775437 MS.gene067297:CDS
TCGCCTGCGATAACCTGGAC+TGG 0.471164 8.2:+70775554 None:intergenic
ACATGATGAAGCGGCCCATA+AGG 0.474793 8.2:+70775871 None:intergenic
CGCCTGCGATAACCTGGACT+GGG 0.476215 8.2:+70775555 None:intergenic
AGGCGACCAAGTCCAGACTA+TGG 0.483060 8.2:-70775537 MS.gene067297:CDS
GTCTGTGGAGTATGCTCTGA+GGG 0.501476 8.2:-70775643 MS.gene067297:CDS
GTCCTGATTATGGCAGGAAT+AGG 0.505340 8.2:-70775461 MS.gene067297:CDS
CTCGCAGTCCTGTGTATGAT+AGG 0.516707 8.2:-70775509 MS.gene067297:CDS
GGCAGTCCCAGAAGAGGAGG+GGG 0.518717 8.2:-70775591 MS.gene067297:CDS
GGACGGCCATAGTCTGGACT+TGG 0.533541 8.2:+70775531 None:intergenic
CTTGCTAGATCTCCCAGTCC+AGG 0.540800 8.2:-70775567 MS.gene067297:CDS
CTTGCAGTAAGATACTGGAT+AGG 0.543043 8.2:-70775671 MS.gene067297:intron
CCTTAGAGTGTACAAATATG+AGG 0.549055 8.2:-70775789 MS.gene067297:intron
GAACGTGGGCGTCACCGTGA+TGG 0.553136 8.2:-70775988 MS.gene067297:CDS
CGTCGCTTGTCATAACCAAA+TGG 0.554953 8.2:+70776151 None:intergenic
GCTATCTGTGGAGTGGGCTA+GGG 0.556063 8.2:-70776128 MS.gene067297:intron
CTCCCAGTCCAGGTTATCGC+AGG 0.556272 8.2:-70775557 MS.gene067297:CDS
CCTGTGTATGATAGGTATAG+TGG 0.556286 8.2:-70775501 MS.gene067297:CDS
CTGAATATGGCAGATACCGC+AGG 0.560299 8.2:-70775410 MS.gene067297:intron
TTGCAGTAAGATACTGGATA+GGG 0.567226 8.2:-70775670 MS.gene067297:intron
GGAGGAGTCCTGATTATGGC+AGG 0.568022 8.2:-70775467 MS.gene067297:CDS
GGTGGCAGTCCCAGAAGAGG+AGG 0.570458 8.2:-70775594 MS.gene067297:CDS
ATAGGAGTCCTGATTATGGC+AGG 0.570791 8.2:-70775443 MS.gene067297:CDS
CATACACAGGACTGCGAGGA+CGG 0.574443 8.2:+70775514 None:intergenic
GGTTTGGCTTTGAGCCATCA+CGG 0.574706 8.2:+70775974 None:intergenic
ACTGGATAGGGTGGTGTCTG+TGG 0.574929 8.2:-70775658 MS.gene067297:CDS
TAAGTTCTTGACCTTCGCAC+TGG 0.577328 8.2:+70775298 None:intergenic
TTCATCATGTTCGAATTCGT+CGG 0.579765 8.2:-70775858 MS.gene067297:CDS
TGAAGGAGGAAAGATGAGGC+CGG 0.580481 8.2:-70777580 None:intergenic
GTGGCAGTCCCAGAAGAGGA+GGG 0.580855 8.2:-70775593 MS.gene067297:CDS
CGAATTCGAACATGATGAAG+CGG 0.587916 8.2:+70775862 None:intergenic
ATCACAAATAGAGTCTTAGT+GGG 0.592629 8.2:+70775946 None:intergenic
GCGACGGCTATCTGTGGAGT+GGG 0.593866 8.2:-70776134 MS.gene067297:CDS
ATAGGTATAGTGGACCGGAC+AGG 0.595852 8.2:-70775491 MS.gene067297:CDS
GTATGATAGGTATAGTGGAC+CGG 0.598217 8.2:-70775496 MS.gene067297:CDS
ATAGTGGACCGGACAGGCGG+AGG 0.599511 8.2:-70775485 MS.gene067297:CDS
TGGCAGTCCCAGAAGAGGAG+GGG 0.613456 8.2:-70775592 MS.gene067297:CDS
TCTGAGGGATGATAGTGATA+GGG 0.620938 8.2:-70775628 MS.gene067297:CDS
TGACAAGCGACGGCTATCTG+TGG 0.625155 8.2:-70776140 MS.gene067297:CDS
CAGTAAGATACTGGATAGGG+TGG 0.630521 8.2:-70775667 MS.gene067297:CDS
AGCGACGGCTATCTGTGGAG+TGG 0.634117 8.2:-70776135 MS.gene067297:CDS
ATTTGTGCAGTATGAAACAC+AGG 0.636540 8.2:-70775827 MS.gene067297:CDS
ACAGTCGTTCACCAGTGCGA+AGG 0.644913 8.2:-70775309 MS.gene067297:intron
TATGGTGGCAGTCCCAGAAG+AGG 0.645974 8.2:-70775597 MS.gene067297:CDS
CATTTGGTTATGACAAGCGA+CGG 0.649124 8.2:-70776150 MS.gene067297:CDS
CCACTATACCTATCATACAC+AGG 0.654929 8.2:+70775501 None:intergenic
GGTATAGTGGACCGGACAGG+CGG 0.664021 8.2:-70775488 MS.gene067297:CDS
TGTCTGTGGAGTATGCTCTG+AGG 0.665943 8.2:-70775644 MS.gene067297:CDS
GATAGGGTCGACAATTATGG+TGG 0.674418 8.2:-70775612 MS.gene067297:CDS
CTATCATACACAGGACTGCG+AGG 0.693506 8.2:+70775510 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAATAAATCATAAAACT+TGG + chr8.2:70775572-70775591 None:intergenic 15.0%
!! AGAAAAACTTAAAAAACCAA+AGG + chr8.2:70776062-70776081 None:intergenic 20.0%
!! AGAATAAATAAGTCGAAAAA+AGG + chr8.2:70777524-70777543 None:intergenic 20.0%
!!! AACAATGAATTTTTTAGTGT+TGG - chr8.2:70775636-70775655 MS.gene067297:CDS 20.0%
!!! TAAGTGATTTGTTTTCATTT+TGG - chr8.2:70776847-70776866 MS.gene067297:intron 20.0%
! AAAAAAAAATTTGCAGAGGT+TGG + chr8.2:70776140-70776159 None:intergenic 25.0%
! AAGAGATTTCAGAAATAGAA+GGG + chr8.2:70776356-70776375 None:intergenic 25.0%
! AAGGTTTAAATCCAAAATTC+AGG + chr8.2:70776424-70776443 None:intergenic 25.0%
! CATGTTAAATTAAGAAACTC+AGG + chr8.2:70777143-70777162 None:intergenic 25.0%
! CTTAAGTTCATATTATTCTC+AGG + chr8.2:70776831-70776850 None:intergenic 25.0%
! TTCCAAAAAAAAATTTGCAG+AGG + chr8.2:70776144-70776163 None:intergenic 25.0%
!!! AAACCAAAGGATTTTTTCAA+AGG + chr8.2:70776049-70776068 None:intergenic 25.0%
!!! AACCTCTGCAAATTTTTTTT+TGG - chr8.2:70776139-70776158 MS.gene067297:CDS 25.0%
!!! CAAATCATGATTGCTTTTAA+AGG + chr8.2:70776443-70776462 None:intergenic 25.0%
AATCACAAATAGAGTCTTAG+TGG + chr8.2:70776922-70776941 None:intergenic 30.0%
AGAGACACTTTAAACCTTAT+GGG - chr8.2:70776979-70776998 MS.gene067297:intron 30.0%
AGTTGTAGTTTATGGTATGA+GGG - chr8.2:70775710-70775729 MS.gene067297:intron 30.0%
ATCACAAATAGAGTCTTAGT+GGG + chr8.2:70776921-70776940 None:intergenic 30.0%
CAAGAGATTTCAGAAATAGA+AGG + chr8.2:70776357-70776376 None:intergenic 30.0%
! ATGCCTTTGAAAAAATCCTT+TGG - chr8.2:70776043-70776062 MS.gene067297:intron 30.0%
! GAAAATCGAGTTGTAGTTTA+TGG - chr8.2:70775702-70775721 MS.gene067297:intron 30.0%
! TTAAGTTTTTCTTTTGACGC+AGG - chr8.2:70776070-70776089 MS.gene067297:intron 30.0%
!! ATTCTAGCTTAACCCTTAAT+TGG - chr8.2:70775504-70775523 MS.gene067297:CDS 30.0%
!! GATTTGTTTTCATTTTGGCA+GGG - chr8.2:70776852-70776871 MS.gene067297:intron 30.0%
!! TTCTAGCTTAACCCTTAATT+GGG - chr8.2:70775505-70775524 MS.gene067297:CDS 30.0%
!!! TCTAATTTCAGTTTTGTTGC+AGG - chr8.2:70776623-70776642 MS.gene067297:intron 30.0%
!!! TGATTTGTTTTCATTTTGGC+AGG - chr8.2:70776851-70776870 MS.gene067297:intron 30.0%
ACAACACCTGAATATAAGTG+TGG + chr8.2:70776506-70776525 None:intergenic 35.0%
AGTTCATATTATTCTCAGGC+AGG + chr8.2:70776827-70776846 None:intergenic 35.0%
ATAACATAGTGCCCCAATTA+AGG + chr8.2:70775520-70775539 None:intergenic 35.0%
ATCAGTCCACACTTATATTC+AGG - chr8.2:70776497-70776516 MS.gene067297:intron 35.0%
ATTTGTGCAGTATGAAACAC+AGG - chr8.2:70777037-70777056 MS.gene067297:intron 35.0%
CAATCAGAACTGATCTTAGA+GGG - chr8.2:70776256-70776275 MS.gene067297:intron 35.0%
CAGGATTATAGCCTAAGATA+TGG + chr8.2:70777124-70777143 None:intergenic 35.0%
CCTCATATTTGTACACTCTA+AGG + chr8.2:70777078-70777097 None:intergenic 35.0%
CCTTAGAGTGTACAAATATG+AGG - chr8.2:70777075-70777094 MS.gene067297:intron 35.0%
CTATTGTAAACTAGACCCTA+GGG - chr8.2:70775742-70775761 MS.gene067297:intron 35.0%
GACTTCAAATACAATACCTG+CGG + chr8.2:70777473-70777492 None:intergenic 35.0%
GAGAGACACTTTAAACCTTA+TGG - chr8.2:70776978-70776997 MS.gene067297:intron 35.0%
GAGTATGTGAATTGAGAAAG+AGG + chr8.2:70775415-70775434 None:intergenic 35.0%
GAGTTGTAGTTTATGGTATG+AGG - chr8.2:70775709-70775728 MS.gene067297:intron 35.0%
GTACTTTAGCGATCATGTTA+TGG - chr8.2:70776765-70776784 MS.gene067297:intron 35.0%
GTATTCCTTTGTTCCTAACA+GGG - chr8.2:70776524-70776543 MS.gene067297:intron 35.0%
TAACAGGGAAAATGATTTCC+TGG - chr8.2:70776539-70776558 MS.gene067297:intron 35.0%
TAACATAGTGCCCCAATTAA+GGG + chr8.2:70775519-70775538 None:intergenic 35.0%
TCAATCAGAACTGATCTTAG+AGG - chr8.2:70776255-70776274 MS.gene067297:intron 35.0%
TGATGAGATTGCCATATCTT+AGG - chr8.2:70777110-70777129 MS.gene067297:intron 35.0%
TGTATTCCTTTGTTCCTAAC+AGG - chr8.2:70776523-70776542 MS.gene067297:intron 35.0%
TTCATCATGTTCGAATTCGT+CGG - chr8.2:70777006-70777025 MS.gene067297:intron 35.0%
TTGCAGTAAGATACTGGATA+GGG - chr8.2:70777194-70777213 MS.gene067297:intron 35.0%
! ACAATCTCAGACCTGAATTT+TGG - chr8.2:70776410-70776429 MS.gene067297:intron 35.0%
! AGGAAATCATTTTCCCTGTT+AGG + chr8.2:70776540-70776559 None:intergenic 35.0%
! ATTTTCCCTGTTAGGAACAA+AGG + chr8.2:70776532-70776551 None:intergenic 35.0%
! TCTAGCTTAACCCTTAATTG+GGG - chr8.2:70775506-70775525 MS.gene067297:CDS 35.0%
!! GAACGCTTGTTTTCAAAGTA+TGG - chr8.2:70775351-70775370 MS.gene067297:intron 35.0%
AATATGCTGAGCATCTGTCT+TGG - chr8.2:70776110-70776129 MS.gene067297:intron 40.0%
AATCTCTTGTGCTGTCTGAA+TGG - chr8.2:70776368-70776387 MS.gene067297:intron 40.0%
ACCCACAATGACACAAATTG+GGG + chr8.2:70775604-70775623 None:intergenic 40.0%
AGAAAATGCAGATCTGTGGA+TGG + chr8.2:70776187-70776206 None:intergenic 40.0%
AGACCCACAATGACACAAAT+TGG + chr8.2:70775606-70775625 None:intergenic 40.0%
AGGAATAGGAGTCCTGATTA+TGG - chr8.2:70777417-70777436 MS.gene067297:intron 40.0%
AGTGATAGGGTCGACAATTA+TGG - chr8.2:70777249-70777268 MS.gene067297:intron 40.0%
ATCCAAATTCCAGAACATGG+TGG + chr8.2:70775777-70775796 None:intergenic 40.0%
CATTTGGTTATGACAAGCGA+CGG - chr8.2:70776714-70776733 MS.gene067297:intron 40.0%
CCACTATACCTATCATACAC+AGG + chr8.2:70777366-70777385 None:intergenic 40.0%
CCTATCCAAATTCCAGAACA+TGG + chr8.2:70775780-70775799 None:intergenic 40.0%
CCTGTGTATGATAGGTATAG+TGG - chr8.2:70777363-70777382 MS.gene067297:intron 40.0%
CGAATTCGAACATGATGAAG+CGG + chr8.2:70777005-70777024 None:intergenic 40.0%
CTGGCAGTGTTGTCAAATAT+CGG - chr8.2:70775837-70775856 MS.gene067297:CDS 40.0%
CTTGCAGTAAGATACTGGAT+AGG - chr8.2:70777193-70777212 MS.gene067297:intron 40.0%
GACCCACAATGACACAAATT+GGG + chr8.2:70775605-70775624 None:intergenic 40.0%
GATGAGAAAATGCAGATCTG+TGG + chr8.2:70776191-70776210 None:intergenic 40.0%
GCGCTTGACAATATTCCATT+TGG - chr8.2:70776698-70776717 MS.gene067297:intron 40.0%
GCTATTGTAAACTAGACCCT+AGG - chr8.2:70775741-70775760 MS.gene067297:intron 40.0%
GGGAAAATGATTTCCTGGTT+TGG - chr8.2:70776544-70776563 MS.gene067297:intron 40.0%
TCACTAACTCTAGTGCGAAT+CGG + chr8.2:70776954-70776973 None:intergenic 40.0%
TCCAAATTTCCAGCGAAAAC+CGG + chr8.2:70775306-70775325 None:intergenic 40.0%
TCTGAATGGAGAATCATGCT+TGG - chr8.2:70776382-70776401 MS.gene067297:intron 40.0%
TGGAATTTGGATAGGAGTGA+TGG - chr8.2:70775785-70775804 MS.gene067297:intron 40.0%
TGTCATTGTGGGTCTAAGAA+CGG - chr8.2:70775611-70775630 MS.gene067297:CDS 40.0%
TGTCCCGATGGAAAAAGAAA+CGG - chr8.2:70776004-70776023 MS.gene067297:intron 40.0%
TTATGGTATGAGGGTGATGT+AGG - chr8.2:70775719-70775738 MS.gene067297:intron 40.0%
TTGCTCTTGCAGTAAGATAC+TGG - chr8.2:70777188-70777207 MS.gene067297:intron 40.0%
! ACCCCAATTTGTGTCATTGT+GGG - chr8.2:70775600-70775619 MS.gene067297:CDS 40.0%
! TACCCCAATTTGTGTCATTG+TGG - chr8.2:70775599-70775618 MS.gene067297:CDS 40.0%
! TCTGAGGGATGATAGTGATA+GGG - chr8.2:70777236-70777255 MS.gene067297:intron 40.0%
! TTCTTTTTCCATCGGGACAT+AGG + chr8.2:70776003-70776022 None:intergenic 40.0%
!! AACCACCATGTTCTGGAATT+TGG - chr8.2:70775772-70775791 MS.gene067297:intron 40.0%
!! CCATGTTCTGGAATTTGGAT+AGG - chr8.2:70775777-70775796 MS.gene067297:intron 40.0%
!! GTATGATAGGTATAGTGGAC+CGG - chr8.2:70777368-70777387 MS.gene067297:intron 40.0%
!! TCTGCCGTTTCTTTTTCCAT+CGG + chr8.2:70776011-70776030 None:intergenic 40.0%
ACCACCATATCTGAGTATGG+GGG + chr8.2:70775916-70775935 None:intergenic 45.0%
AGGAACAGGAGTCCTGAATA+TGG - chr8.2:70777441-70777460 MS.gene067297:intron 45.0%
ATAGGAGTCCTGATTATGGC+AGG - chr8.2:70777421-70777440 MS.gene067297:intron 45.0%
ATGCAGATCTGTGGATGGAA+AGG + chr8.2:70776182-70776201 None:intergenic 45.0%
ATGTTCAGTGAAGCTAGGCA+TGG + chr8.2:70776303-70776322 None:intergenic 45.0%
CACCACCATATCTGAGTATG+GGG + chr8.2:70775917-70775936 None:intergenic 45.0%
CACTAACTCTAGTGCGAATC+GGG + chr8.2:70776953-70776972 None:intergenic 45.0%
CAGTAAGATACTGGATAGGG+TGG - chr8.2:70777197-70777216 MS.gene067297:intron 45.0%
CCTAGCTTCACTGAACATAG+GGG - chr8.2:70776305-70776324 MS.gene067297:intron 45.0%
CGTCGCTTGTCATAACCAAA+TGG + chr8.2:70776716-70776735 None:intergenic 45.0%
CTAGACATCAGTGTTGTCGA+TGG + chr8.2:70775978-70775997 None:intergenic 45.0%
CTCCTATTCCTGCCATAATC+AGG + chr8.2:70777408-70777427 None:intergenic 45.0%
GACGCAGGAACTTCTACTAA+GGG - chr8.2:70776085-70776104 MS.gene067297:intron 45.0%
GAGCCAACAATCTGATATGC+TGG + chr8.2:70775951-70775970 None:intergenic 45.0%
GATAGGGTCGACAATTATGG+TGG - chr8.2:70777252-70777271 MS.gene067297:intron 45.0%
GCACCACCATATCTGAGTAT+GGG + chr8.2:70775918-70775937 None:intergenic 45.0%
GCCTAGCTTCACTGAACATA+GGG - chr8.2:70776304-70776323 MS.gene067297:intron 45.0%
GTCCTGATTATGGCAGGAAT+AGG - chr8.2:70777403-70777422 MS.gene067297:intron 45.0%
GTGTTGTCAAATATCGGCCA+TGG - chr8.2:70775843-70775862 MS.gene067297:CDS 45.0%
TAAGTTCTTGACCTTCGCAC+TGG + chr8.2:70777569-70777588 None:intergenic 45.0%
TGACGCAGGAACTTCTACTA+AGG - chr8.2:70776084-70776103 MS.gene067297:intron 45.0%
TGATGCACATGAAGCTGTAG+AGG + chr8.2:70776481-70776500 None:intergenic 45.0%
TGCAGATCTGTGGATGGAAA+GGG + chr8.2:70776181-70776200 None:intergenic 45.0%
TGCCTAGCTTCACTGAACAT+AGG - chr8.2:70776303-70776322 MS.gene067297:intron 45.0%
TGGCCAGCATATCAGATTGT+TGG - chr8.2:70775945-70775964 MS.gene067297:CDS 45.0%
TGTGAAGTTCGTGTGTCAGT+TGG - chr8.2:70775677-70775696 MS.gene067297:intron 45.0%
TTGTCAAATATCGGCCATGG+CGG - chr8.2:70775846-70775865 MS.gene067297:CDS 45.0%
! CTCTGAGGGATGATAGTGAT+AGG - chr8.2:70777235-70777254 MS.gene067297:intron 45.0%
! GAACGCGTTGACATGAAATC+TGG - chr8.2:70775381-70775400 MS.gene067297:intron 45.0%
! TTGGCTGATGTACTTGGTGA+GGG - chr8.2:70776563-70776582 MS.gene067297:intron 45.0%
! TTTGGCTGATGTACTTGGTG+AGG - chr8.2:70776562-70776581 MS.gene067297:intron 45.0%
!! AGCTGTAGAGGTGTTGAATG+TGG + chr8.2:70776469-70776488 None:intergenic 45.0%
!! ATAGAGTCTTAGTGGGCTTC+TGG + chr8.2:70776914-70776933 None:intergenic 45.0%
!! CTGCCGTTTCTTTTTCCATC+GGG + chr8.2:70776010-70776029 None:intergenic 45.0%
!! GGATATTGGTTGTGGGGTTT+TGG - chr8.2:70775867-70775886 MS.gene067297:CDS 45.0%
AACGCCCCCATACTCAGATA+TGG - chr8.2:70775909-70775928 MS.gene067297:CDS 50.0%
ACATGATGAAGCGGCCCATA+AGG + chr8.2:70776996-70777015 None:intergenic 50.0%
ATCTGTGGATGGAAAGGGAG+CGG + chr8.2:70776176-70776195 None:intergenic 50.0%
CCAAGTACATCAGCCAAACC+AGG + chr8.2:70776560-70776579 None:intergenic 50.0%
CCCCTATGTTCAGTGAAGCT+AGG + chr8.2:70776308-70776327 None:intergenic 50.0%
CTATCATACACAGGACTGCG+AGG + chr8.2:70777357-70777376 None:intergenic 50.0%
CTCCTGTTCCTGCCATAATC+AGG + chr8.2:70777432-70777451 None:intergenic 50.0%
CTCGCAGTCCTGTGTATGAT+AGG - chr8.2:70777355-70777374 MS.gene067297:intron 50.0%
CTGAATATGGCAGATACCGC+AGG - chr8.2:70777454-70777473 MS.gene067297:intron 50.0%
CTGATATGCTGGCCAGCATA+TGG + chr8.2:70775940-70775959 None:intergenic 50.0%
CTGCGGTATCTGCCATATTC+AGG + chr8.2:70777456-70777475 None:intergenic 50.0%
GAAGTTCGTGTGTCAGTTGG+CGG - chr8.2:70775680-70775699 MS.gene067297:intron 50.0%
GGCACCACCATATCTGAGTA+TGG + chr8.2:70775919-70775938 None:intergenic 50.0%
GTCCTGATTATGGCAGGAAC+AGG - chr8.2:70777427-70777446 MS.gene067297:intron 50.0%
GTCTGTGGAGTATGCTCTGA+GGG - chr8.2:70777221-70777240 MS.gene067297:intron 50.0%
TACTGCGAACCACCATGTTC+TGG - chr8.2:70775765-70775784 MS.gene067297:intron 50.0%
TGTCTGTGGAGTATGCTCTG+AGG - chr8.2:70777220-70777239 MS.gene067297:intron 50.0%
! GTCTAGTTCCTATGTCCCGA+TGG - chr8.2:70775992-70776011 MS.gene067297:CDS 50.0%
!! ATAGGTATAGTGGACCGGAC+AGG - chr8.2:70777373-70777392 MS.gene067297:intron 50.0%
!! ATATCGGCCATGGCGGATAT+TGG - chr8.2:70775853-70775872 MS.gene067297:CDS 50.0%
!! CATGGCGGATATTGGTTGTG+GGG - chr8.2:70775861-70775880 MS.gene067297:CDS 50.0%
!! CATTTTGGCAGGGTGAACGT+GGG - chr8.2:70776862-70776881 MS.gene067297:intron 50.0%
!! CCATGGCGGATATTGGTTGT+GGG - chr8.2:70775860-70775879 MS.gene067297:CDS 50.0%
!! CCTGGTTTGGCTGATGTACT+TGG - chr8.2:70776557-70776576 MS.gene067297:intron 50.0%
!! GATATGGTGGTGCCATATGC+TGG - chr8.2:70775925-70775944 MS.gene067297:CDS 50.0%
!! GCCGGTTTTCGCTGGAAATT+TGG - chr8.2:70775302-70775321 MS.gene067297:CDS 50.0%
!! GGATAGGAGTGATGGACATG+AGG - chr8.2:70775793-70775812 MS.gene067297:CDS 50.0%
!! GGTTTGGCTTTGAGCCATCA+CGG + chr8.2:70776893-70776912 None:intergenic 50.0%
!! GTCTTAGTGGGCTTCTGGTT+TGG + chr8.2:70776909-70776928 None:intergenic 50.0%
!! TCATTTTGGCAGGGTGAACG+TGG - chr8.2:70776861-70776880 MS.gene067297:intron 50.0%
!!! ATGAGGCTGCTTTTGTGGCT+CGG - chr8.2:70775810-70775829 MS.gene067297:CDS 50.0%
!!! TGGACATGAGGCTGCTTTTG+TGG - chr8.2:70775805-70775824 MS.gene067297:CDS 50.0%
ACAGTCGTTCACCAGTGCGA+AGG - chr8.2:70777555-70777574 MS.gene067297:CDS 55.0%
ACTGGATAGGGTGGTGTCTG+TGG - chr8.2:70777206-70777225 MS.gene067297:intron 55.0%
AGGCGACCAAGTCCAGACTA+TGG - chr8.2:70777327-70777346 MS.gene067297:intron 55.0%
AGGCGGAGGAGTCCTGATTA+TGG - chr8.2:70777393-70777412 MS.gene067297:intron 55.0%
ATGGTGGTTCGCAGTACCCT+AGG + chr8.2:70775761-70775780 None:intergenic 55.0%
CATACACAGGACTGCGAGGA+CGG + chr8.2:70777353-70777372 None:intergenic 55.0%
CCCACAACCAATATCCGCCA+TGG + chr8.2:70775863-70775882 None:intergenic 55.0%
CTTGCTAGATCTCCCAGTCC+AGG - chr8.2:70777297-70777316 MS.gene067297:intron 55.0%
GCCCCCATACTCAGATATGG+TGG - chr8.2:70775912-70775931 MS.gene067297:CDS 55.0%
GGAGGAGTCCTGATTATGGC+AGG - chr8.2:70777397-70777416 MS.gene067297:intron 55.0%
TATGGTGGCAGTCCCAGAAG+AGG - chr8.2:70777267-70777286 MS.gene067297:intron 55.0%
TGACAAGCGACGGCTATCTG+TGG - chr8.2:70776724-70776743 MS.gene067297:intron 55.0%
TGGTGGTTCGCAGTACCCTA+GGG + chr8.2:70775760-70775779 None:intergenic 55.0%
!! GCCATGGCGGATATTGGTTG+TGG - chr8.2:70775859-70775878 MS.gene067297:CDS 55.0%
!! GCTATCTGTGGAGTGGGCTA+GGG - chr8.2:70776736-70776755 MS.gene067297:intron 55.0%
!! GCTTTTGTGGCTCGGATGTC+TGG - chr8.2:70775818-70775837 MS.gene067297:CDS 55.0%
AGCAAGACCCCCTCCTCTTC+TGG + chr8.2:70777283-70777302 None:intergenic 60.0%
AGCGACGGCTATCTGTGGAG+TGG - chr8.2:70776729-70776748 MS.gene067297:intron 60.0%
CGCCTGCGATAACCTGGACT+GGG + chr8.2:70777312-70777331 None:intergenic 60.0%
CTCCCAGTCCAGGTTATCGC+AGG - chr8.2:70777307-70777326 MS.gene067297:intron 60.0%
CTTGGTCGCCTGCGATAACC+TGG + chr8.2:70777318-70777337 None:intergenic 60.0%
GCAAGACCCCCTCCTCTTCT+GGG + chr8.2:70777282-70777301 None:intergenic 60.0%
GCGACGGCTATCTGTGGAGT+GGG - chr8.2:70776730-70776749 MS.gene067297:intron 60.0%
GGACGGCCATAGTCTGGACT+TGG + chr8.2:70777336-70777355 None:intergenic 60.0%
GTGGATGGAAAGGGAGCGGA+AGG + chr8.2:70776172-70776191 None:intergenic 60.0%
GTGGCAGTCCCAGAAGAGGA+GGG - chr8.2:70777271-70777290 MS.gene067297:intron 60.0%
TCGCCTGCGATAACCTGGAC+TGG + chr8.2:70777313-70777332 None:intergenic 60.0%
TGGCAGTCCCAGAAGAGGAG+GGG - chr8.2:70777272-70777291 MS.gene067297:intron 60.0%
! GGCTATCTGTGGAGTGGGCT+AGG - chr8.2:70776735-70776754 MS.gene067297:intron 60.0%
!! GGTATAGTGGACCGGACAGG+CGG - chr8.2:70777376-70777395 MS.gene067297:intron 60.0%
!!! GGGGTTTTGGCTTTCCGCCA+TGG - chr8.2:70775880-70775899 MS.gene067297:CDS 60.0%
CTGCGAGGACGGCCATAGTC+TGG + chr8.2:70777342-70777361 None:intergenic 65.0%
GAACGTGGGCGTCACCGTGA+TGG - chr8.2:70776876-70776895 MS.gene067297:intron 65.0%
GGCAGTCCCAGAAGAGGAGG+GGG - chr8.2:70777273-70777292 MS.gene067297:intron 65.0%
GGTGGCAGTCCCAGAAGAGG+AGG - chr8.2:70777270-70777289 MS.gene067297:intron 65.0%
TCAGGACTCCTCCGCCTGTC+CGG + chr8.2:70777390-70777409 None:intergenic 65.0%
!! ATAGTGGACCGGACAGGCGG+AGG - chr8.2:70777379-70777398 MS.gene067297:intron 65.0%
!! ATGGGGGCGTTGCATCGCCA+TGG + chr8.2:70775900-70775919 None:intergenic 65.0%
!! GGGGCGTTGCATCGCCATGG+CGG + chr8.2:70775897-70775916 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 70775297 70777589 70775297 ID=MS.gene067297
chr8.2 mRNA 70775297 70777589 70775297 ID=MS.gene067297.t1;Parent=MS.gene067297
chr8.2 exon 70777484 70777589 70777484 ID=MS.gene067297.t1.exon1;Parent=MS.gene067297.t1
chr8.2 CDS 70777484 70777589 70777484 ID=cds.MS.gene067297.t1;Parent=MS.gene067297.t1
chr8.2 exon 70776129 70776241 70776129 ID=MS.gene067297.t1.exon2;Parent=MS.gene067297.t1
chr8.2 CDS 70776129 70776241 70776129 ID=cds.MS.gene067297.t1;Parent=MS.gene067297.t1
chr8.2 exon 70775790 70776013 70775790 ID=MS.gene067297.t1.exon3;Parent=MS.gene067297.t1
chr8.2 CDS 70775790 70776013 70775790 ID=cds.MS.gene067297.t1;Parent=MS.gene067297.t1
chr8.2 exon 70775411 70775686 70775411 ID=MS.gene067297.t1.exon4;Parent=MS.gene067297.t1
chr8.2 CDS 70775411 70775686 70775411 ID=cds.MS.gene067297.t1;Parent=MS.gene067297.t1
chr8.2 exon 70775297 70775327 70775297 ID=MS.gene067297.t1.exon5;Parent=MS.gene067297.t1
chr8.2 CDS 70775297 70775327 70775297 ID=cds.MS.gene067297.t1;Parent=MS.gene067297.t1
Gene Sequence

>MS.gene067297

ATGAGGCCGGTTTTCGCTGGAAATTTGGAGTACGATACTCGTCAATCAGAACTTGAACGCTTGTTTTCAAAGTATGGAAGAATTGAACGCGTTGACATGAAATCTGGTATAATCTCCTCTTTCTCAATTCACATACTCAAATTTTTCTTGTTTAATTGTTATTTTTTGTTGAAGATTTTAGTTTCATTTTGTTGATTAAGTTTCAAGATTCTAGCTTAACCCTTAATTGGGGCACTATGTTATGTTCATTAGTTTAATTTTGTAATCAATTACCAAGTTTTATGATTTATTTTGTTGATTTTTACCCCAATTTGTGTCATTGTGGGTCTAAGAACGGTAAACAATGAATTTTTTAGTGTTGGATTAGATGTCATAGCTTGTGTGAAGTTCGTGTGTCAGTTGGCGGAAAATCGAGTTGTAGTTTATGGTATGAGGGTGATGTAGGCTATTGTAAACTAGACCCTAGGGTACTGCGAACCACCATGTTCTGGAATTTGGATAGGAGTGATGGACATGAGGCTGCTTTTGTGGCTCGGATGTCTGGCAGTGTTGTCAAATATCGGCCATGGCGGATATTGGTTGTGGGGTTTTGGCTTTCCGCCATGGCGATGCAACGCCCCCATACTCAGATATGGTGGTGCCATATGCTGGCCAGCATATCAGATTGTTGGCTCTCTGCCATCGACAACACTGATGTCTAGTTCCTATGTCCCGATGGAAAAAGAAACGGCAGACGCGAAATTGCAATGCCTTTGAAAAAATCCTTTGGTTTTTTAAGTTTTTCTTTTGACGCAGGAACTTCTACTAAGGGAAAATATGCTGAGCATCTGTCTTGGCTTGCCAACCTCTGCAAATTTTTTTTTGGAAGAAAACCTTCCGCTCCCTTTCCATCCACAGATCTGCATTTTCTCATCTGATCATTCGTCACTCACTAACATCATCACTCATCATTGACATTTCAATCAGAACTGATCTTAGAGGGATCATCATTCAATTTATTAAGCCATGCCTAGCTTCACTGAACATAGGGGATCAATGAAATTCTGTCAAGTCATGCCCTTCTATTTCTGAAATCTCTTGTGCTGTCTGAATGGAGAATCATGCTTGGCAATTACAATCTCAGACCTGAATTTTGGATTTAAACCTTTAAAAGCAATCATGATTTGTTTCCACATTCAACACCTCTACAGCTTCATGTGCATCAGTCCACACTTATATTCAGGTGTTGTATTCCTTTGTTCCTAACAGGGAAAATGATTTCCTGGTTTGGCTGATGTACTTGGTGAGGGATAACATGCTGATATGTATTTTATCGTCATATATCTCTCTAATTTCAGTTTTGTTGCAGGATTTGCTTTTGTCTATTATGAAGACGAACGTGATGCTGAAGAAGCAATTCGTGCGCTTGACAATATTCCATTTGGTTATGACAAGCGACGGCTATCTGTGGAGTGGGCTAGGGTATGCAGTACTTTAGCGATCATGTTATGGTTTTATTTACTCATCAACGAAGACATTTGAATATGACCTGCCTGAGAATAATATGAACTTAAGTGATTTGTTTTCATTTTGGCAGGGTGAACGTGGGCGTCACCGTGATGGCTCAAAGCCAAACCAGAAGCCCACTAAGACTCTATTTGTGATTAACTTTGACCCGATTCGCACTAGAGTTAGTGATATAGAGAGACACTTTAAACCTTATGGGCCGCTTCATCATGTTCGAATTCGTCGGAATTTTGCATTTGTGCAGTATGAAACACAGGAAGATGCTACTAAAGCCTTAGAGTGTACAAATATGAGGTCAGTGTCTCATTGATGAGATTGCCATATCTTAGGCTATAATCCTGAGTTTCTTAATTTAACATGTACAATTATAAAGAGTTTCTGCTCATTGCTCTTGCAGTAAGATACTGGATAGGGTGGTGTCTGTGGAGTATGCTCTGAGGGATGATAGTGATAGGGTCGACAATTATGGTGGCAGTCCCAGAAGAGGAGGGGGTCTTGCTAGATCTCCCAGTCCAGGTTATCGCAGGCGACCAAGTCCAGACTATGGCCGTCCTCGCAGTCCTGTGTATGATAGGTATAGTGGACCGGACAGGCGGAGGAGTCCTGATTATGGCAGGAATAGGAGTCCTGATTATGGCAGGAACAGGAGTCCTGAATATGGCAGATACCGCAGGTATTGTATTTGAAGTCAATTTTATTTATCTCTTGCAATTATGTTCCTTTTTTCGACTTATTTATTCTGTTATGTATCTACAGTCGTTCACCAGTGCGAAGGTCAAGAACTTAG

Protein sequence

>MS.gene067297.t1

MRPVFAGNLEYDTRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPFGYDKRRLSVEWARGERGRHRDGSKPNQKPTKTLFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYGGSPRRGGGLARSPSPGYRRRPSPDYGRPRSPVYDRYSGPDRRRSPDYGRNRSPDYGRNRSPEYGRYRSRSPVRRSRT