Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067650.t1 | AES87697.1 | 97.3 | 365 | 10 | 0 | 1 | 365 | 1 | 365 | 4.40E-175 | 624 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067650.t1 | F4HT21 | 59.8 | 296 | 115 | 2 | 10 | 305 | 13 | 304 | 8.8e-92 | 338.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067650.t1 | G7JN60 | 97.3 | 365 | 10 | 0 | 1 | 365 | 1 | 365 | 3.1e-175 | 624.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51627 | MS.gene067650 | PPI |
| MS.gene56256 | MS.gene067650 | PPI |
| MS.gene63514 | MS.gene067650 | PPI |
| MS.gene009458 | MS.gene067650 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067650.t1 | MTR_4g032350 | 96.712 | 365 | 12 | 0 | 1 | 365 | 1 | 365 | 0.0 | 723 |
| MS.gene067650.t1 | MTR_4g032300 | 80.826 | 339 | 61 | 2 | 1 | 338 | 1 | 336 | 0.0 | 555 |
| MS.gene067650.t1 | MTR_4g032220 | 71.299 | 331 | 89 | 1 | 10 | 334 | 9 | 339 | 2.45e-162 | 458 |
| MS.gene067650.t1 | MTR_4g032240 | 65.165 | 333 | 108 | 2 | 10 | 334 | 9 | 341 | 5.81e-150 | 427 |
| MS.gene067650.t1 | MTR_4g032330 | 77.778 | 63 | 14 | 0 | 276 | 338 | 17 | 79 | 1.05e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067650.t1 | AT1G33970 | 58.385 | 322 | 130 | 2 | 10 | 331 | 13 | 330 | 3.41e-122 | 356 |
| MS.gene067650.t1 | AT1G33970 | 58.385 | 322 | 130 | 2 | 10 | 331 | 13 | 330 | 3.41e-122 | 356 |
| MS.gene067650.t1 | AT1G33970 | 58.385 | 322 | 130 | 2 | 10 | 331 | 13 | 330 | 3.41e-122 | 356 |
| MS.gene067650.t1 | AT1G33970 | 58.385 | 322 | 130 | 2 | 10 | 331 | 13 | 330 | 3.41e-122 | 356 |
| MS.gene067650.t1 | AT1G33970 | 58.801 | 267 | 106 | 2 | 10 | 276 | 13 | 275 | 5.87e-101 | 300 |
| MS.gene067650.t1 | AT1G33900 | 47.810 | 274 | 142 | 1 | 18 | 291 | 13 | 285 | 1.29e-88 | 270 |
| MS.gene067650.t1 | AT1G33950 | 48.718 | 273 | 139 | 1 | 21 | 293 | 13 | 284 | 1.46e-87 | 267 |
| MS.gene067650.t1 | AT4G09940 | 47.712 | 306 | 152 | 7 | 24 | 326 | 47 | 347 | 2.04e-85 | 264 |
| MS.gene067650.t1 | AT4G09940 | 47.712 | 306 | 152 | 7 | 24 | 326 | 90 | 390 | 1.11e-84 | 264 |
| MS.gene067650.t1 | AT1G33930 | 45.936 | 283 | 149 | 2 | 9 | 291 | 23 | 301 | 4.61e-82 | 253 |
| MS.gene067650.t1 | AT1G33960 | 49.446 | 271 | 134 | 2 | 13 | 283 | 33 | 300 | 5.97e-82 | 254 |
| MS.gene067650.t1 | AT1G33960 | 49.446 | 271 | 134 | 2 | 13 | 283 | 57 | 324 | 1.67e-81 | 253 |
| MS.gene067650.t1 | AT1G33950 | 46.886 | 273 | 138 | 2 | 21 | 293 | 13 | 278 | 1.66e-80 | 248 |
| MS.gene067650.t1 | AT4G09950 | 43.636 | 330 | 171 | 7 | 3 | 329 | 4 | 321 | 8.92e-80 | 248 |
| MS.gene067650.t1 | AT2G26820 | 42.857 | 336 | 164 | 6 | 20 | 327 | 1 | 336 | 2.43e-77 | 242 |
| MS.gene067650.t1 | AT2G26820 | 42.857 | 336 | 164 | 6 | 20 | 327 | 1 | 336 | 7.57e-77 | 242 |
| MS.gene067650.t1 | AT1G33910 | 46.520 | 273 | 140 | 2 | 19 | 291 | 8 | 274 | 1.31e-75 | 236 |
| MS.gene067650.t1 | AT2G26820 | 42.604 | 338 | 166 | 6 | 20 | 329 | 1 | 338 | 1.50e-75 | 241 |
| MS.gene067650.t1 | AT2G26820 | 43.168 | 322 | 171 | 5 | 20 | 329 | 1 | 322 | 2.84e-75 | 240 |
| MS.gene067650.t1 | AT1G33890 | 43.273 | 275 | 155 | 1 | 18 | 292 | 7 | 280 | 4.11e-73 | 231 |
| MS.gene067650.t1 | AT1G33890 | 43.273 | 275 | 155 | 1 | 18 | 292 | 7 | 280 | 4.11e-73 | 231 |
| MS.gene067650.t1 | AT4G09930 | 42.675 | 314 | 169 | 6 | 24 | 335 | 26 | 330 | 3.36e-69 | 221 |
| MS.gene067650.t1 | AT1G33870 | 43.348 | 233 | 130 | 1 | 49 | 281 | 1 | 231 | 7.70e-67 | 212 |
| MS.gene067650.t1 | AT1G33830 | 47.368 | 209 | 110 | 0 | 27 | 235 | 11 | 219 | 7.23e-66 | 208 |
| MS.gene067650.t1 | AT1G33880 | 40.376 | 213 | 121 | 2 | 18 | 230 | 17 | 223 | 1.62e-55 | 182 |
| MS.gene067650.t1 | AT1G33880 | 40.376 | 213 | 121 | 2 | 18 | 230 | 17 | 223 | 1.62e-55 | 182 |
| MS.gene067650.t1 | AT4G09950 | 41.569 | 255 | 144 | 5 | 77 | 329 | 7 | 258 | 8.94e-53 | 176 |
Find 61 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGTCTTGGTGCCGATAAT+TGG | 0.262974 | 4.1:-68904843 | MS.gene067650:CDS |
| TTAAACAACTCATCTGTATA+AGG | 0.274695 | 4.1:+68903698 | None:intergenic |
| CGATTGTCCAGAGCCTTTAA+AGG | 0.279472 | 4.1:-68904190 | MS.gene067650:intron |
| TACATGATTATCGTCTTTAC+CGG | 0.324469 | 4.1:-68904264 | MS.gene067650:CDS |
| AACAGAGAATACTACAATTA+AGG | 0.334336 | 4.1:+68904362 | None:intergenic |
| GGTTGCACTCTTCCCATTCC+CGG | 0.338813 | 4.1:+68904759 | None:intergenic |
| AATAGTCAAGTGCATTGATT+TGG | 0.350778 | 4.1:-68904403 | MS.gene067650:CDS |
| AGAATGGCACAACGATCTTC+TGG | 0.354035 | 4.1:+68902709 | None:intergenic |
| GAAACACTGGACCAGTATTT+AGG | 0.362040 | 4.1:-68904216 | MS.gene067650:CDS |
| GCAACCGGAAATAGTATTCT+TGG | 0.364280 | 4.1:-68904742 | MS.gene067650:CDS |
| AGAAGCAAACTCCCAATTAT+CGG | 0.404869 | 4.1:+68904831 | None:intergenic |
| TACAAGGTTGGAGGAACAAT+TGG | 0.406298 | 4.1:-68902929 | MS.gene067650:CDS |
| GTCGACCGAGGCTAAGACTT+TGG | 0.407299 | 4.1:-68904797 | MS.gene067650:CDS |
| TTGCTTGGACGTACCGGGAA+TGG | 0.417653 | 4.1:-68904772 | MS.gene067650:CDS |
| AGGTCTTGGTGCCGATAATT+GGG | 0.419484 | 4.1:-68904842 | MS.gene067650:CDS |
| ATGTACAAAAGAAGATATAT+TGG | 0.429182 | 4.1:-68903525 | MS.gene067650:CDS |
| CGGAGCGTGCAGAAATTATT+CGG | 0.444715 | 4.1:-68904303 | MS.gene067650:CDS |
| TGCTTGGACGTACCGGGAAT+GGG | 0.450806 | 4.1:-68904771 | MS.gene067650:CDS |
| TGAGTTGTTTAAAGAACTAA+AGG | 0.456734 | 4.1:-68903687 | MS.gene067650:intron |
| GACAATCGCGACCTAAATAC+TGG | 0.463624 | 4.1:+68904205 | None:intergenic |
| TTGGCTTCAGAAACGAGAAA+TGG | 0.469540 | 4.1:-68903588 | MS.gene067650:intron |
| TCGGTTGGAATTGAACTACT+TGG | 0.471172 | 4.1:-68904432 | MS.gene067650:CDS |
| AAGAGAGAAGTTGTTGAACT+TGG | 0.473678 | 4.1:+68903756 | None:intergenic |
| GTAGGTAGAGTCAAAGTTGA+GGG | 0.496709 | 4.1:-68902959 | MS.gene067650:intron |
| CAAACAACTGAGCTTAATGA+TGG | 0.498734 | 4.1:-68904661 | MS.gene067650:CDS |
| TTCTTCCAATTCATCTCCCC+CGG | 0.507786 | 4.1:+68904245 | None:intergenic |
| AAGTCGAGGACTAGCTCTTC+CGG | 0.512151 | 4.1:-68904706 | MS.gene067650:CDS |
| AGGCACAAGGAGAACTTCGC+AGG | 0.512296 | 4.1:-68902738 | MS.gene067650:CDS |
| AGGCAATTCTTTCTCTGTGT+GGG | 0.516428 | 4.1:-68903832 | MS.gene067650:CDS |
| TGCATTGATTTGGCAAAGGA+CGG | 0.519113 | 4.1:-68904393 | MS.gene067650:CDS |
| GGGAATGGGAAGAGTGCAAC+CGG | 0.533029 | 4.1:-68904757 | MS.gene067650:CDS |
| AGGAAGAAGAGAGTGCTCTA+CGG | 0.540042 | 4.1:-68904323 | MS.gene067650:CDS |
| AGTTGTTTGCATTTCGCATG+AGG | 0.544861 | 4.1:+68904675 | None:intergenic |
| ACATGATTATCGTCTTTACC+GGG | 0.549360 | 4.1:-68904263 | MS.gene067650:CDS |
| TCTCAGTAATGCGATTCAGC+TGG | 0.552598 | 4.1:+68903468 | None:intergenic |
| AGTTGAGGGCAGCAACTACA+AGG | 0.558512 | 4.1:-68902945 | MS.gene067650:CDS |
| AGAGAGGCTGATGCATTGAA+AGG | 0.561590 | 4.1:-68903548 | MS.gene067650:CDS |
| TTCGCATGAGGTGGTGACAC+CGG | 0.562942 | 4.1:+68904687 | None:intergenic |
| GAGGGCAGCAACTACAAGGT+TGG | 0.566036 | 4.1:-68902941 | MS.gene067650:CDS |
| GCTACTAGTAGATCAGAGAA+TGG | 0.570168 | 4.1:+68902693 | None:intergenic |
| CAGGCAATTCTTTCTCTGTG+TGG | 0.576595 | 4.1:-68903833 | MS.gene067650:CDS |
| GGAAGAAAATAATGAAACAC+TGG | 0.577525 | 4.1:-68904229 | MS.gene067650:CDS |
| ACTCAGAAGAAATCTTGAGC+AGG | 0.583310 | 4.1:-68902827 | MS.gene067650:CDS |
| GTGAATGTTATCGACACTCC+AGG | 0.584952 | 4.1:-68904631 | MS.gene067650:intron |
| CAAAACCAAAGTCTTAGCCT+CGG | 0.594491 | 4.1:+68904792 | None:intergenic |
| GCTGAATCGCATTACTGAGA+TGG | 0.594828 | 4.1:-68903465 | MS.gene067650:intron |
| GCAAGCTGCAAGACTAGAGG+CGG | 0.596459 | 4.1:-68902899 | MS.gene067650:CDS |
| CAAGTGCATTGATTTGGCAA+AGG | 0.599510 | 4.1:-68904397 | MS.gene067650:CDS |
| GGCAGCAACTACAAGGTTGG+AGG | 0.599892 | 4.1:-68902938 | MS.gene067650:CDS |
| TGTAGGTAGAGTCAAAGTTG+AGG | 0.615435 | 4.1:-68902960 | MS.gene067650:intron |
| TTGTTCTTCTATGTCGACCG+AGG | 0.619257 | 4.1:-68904809 | MS.gene067650:CDS |
| TGTTTGCATTTCGCATGAGG+TGG | 0.621167 | 4.1:+68904678 | None:intergenic |
| AGAGCAAGCTGCAAGACTAG+AGG | 0.632155 | 4.1:-68902902 | MS.gene067650:CDS |
| ATGATGTATCTTGAGCTCGC+AGG | 0.640263 | 4.1:+68902788 | None:intergenic |
| ATGATTATCGTCTTTACCGG+GGG | 0.649473 | 4.1:-68904261 | MS.gene067650:CDS |
| TGTTAGAACACGCTTTACTG+AGG | 0.655556 | 4.1:-68904343 | MS.gene067650:CDS |
| CATGATTATCGTCTTTACCG+GGG | 0.681075 | 4.1:-68904262 | MS.gene067650:CDS |
| AACGTGGTAATATCACAGAA+TGG | 0.694251 | 4.1:-68903728 | MS.gene067650:CDS |
| AGAATACTACAATTAAGGCG+TGG | 0.694461 | 4.1:+68904367 | None:intergenic |
| TAATATCACAGAATGGTGGA+CGG | 0.698141 | 4.1:-68903721 | MS.gene067650:CDS |
| GTGGTAATATCACAGAATGG+TGG | 0.698978 | 4.1:-68903725 | MS.gene067650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTAATAAAAACCTTTAA+AGG | + | chr4.1:68903387-68903406 | None:intergenic | 15.0% |
| !! | ATTCTATATTAGATACATTA+TGG | - | chr4.1:68904128-68904147 | MS.gene067650:intron | 15.0% |
| !!! | TTTATTACTATCCTTTTTTT+TGG | - | chr4.1:68903396-68903415 | MS.gene067650:intron | 15.0% |
| !! | AAAATCAAATAATCCTGTAA+AGG | + | chr4.1:68903109-68903128 | None:intergenic | 20.0% |
| !! | AAATAGTATTCTTGGAAAAA+AGG | - | chr4.1:68902827-68902846 | MS.gene067650:CDS | 20.0% |
| !! | ATGTACAAAAGAAGATATAT+TGG | - | chr4.1:68904036-68904055 | MS.gene067650:intron | 20.0% |
| !! | ATGTTTATTCTCTACAAATA+AGG | + | chr4.1:68904459-68904478 | None:intergenic | 20.0% |
| !! | GTAGAGAATAAACATTATTA+GGG | - | chr4.1:68904464-68904483 | MS.gene067650:intron | 20.0% |
| !! | TGTAGAGAATAAACATTATT+AGG | - | chr4.1:68904463-68904482 | MS.gene067650:intron | 20.0% |
| !!! | CAATTGTTATATGATTTTGT+AGG | - | chr4.1:68904584-68904603 | MS.gene067650:intron | 20.0% |
| !!! | TACAGGATTATTTGATTTTT+CGG | - | chr4.1:68903110-68903129 | MS.gene067650:intron | 20.0% |
| ! | AACAGAGAATACTACAATTA+AGG | + | chr4.1:68903202-68903221 | None:intergenic | 25.0% |
| ! | AACATTATTAGGGACAATAA+TGG | - | chr4.1:68904474-68904493 | MS.gene067650:intron | 25.0% |
| ! | AATCCAATGAACCAAAAAAA+AGG | + | chr4.1:68903410-68903429 | None:intergenic | 25.0% |
| ! | GTTGATGTTAATATTAATGC+AGG | - | chr4.1:68903709-68903728 | MS.gene067650:CDS | 25.0% |
| ! | TAGTTGAAATCATTATTGGT+CGG | + | chr4.1:68904430-68904449 | None:intergenic | 25.0% |
| ! | TGAGTTGTTTAAAGAACTAA+AGG | - | chr4.1:68903874-68903893 | MS.gene067650:intron | 25.0% |
| ! | TGTTTATTAGCATGCAAATA+GGG | + | chr4.1:68903610-68903629 | None:intergenic | 25.0% |
| ! | TTAAACAACTCATCTGTATA+AGG | + | chr4.1:68903866-68903885 | None:intergenic | 25.0% |
| ! | TTAAATAGGGGAAATTGTAA+CGG | - | chr4.1:68904265-68904284 | MS.gene067650:CDS | 25.0% |
| ! | TTCCTAGTTGAAATCATTAT+TGG | + | chr4.1:68904434-68904453 | None:intergenic | 25.0% |
| ! | TTGTTTATTAGCATGCAAAT+AGG | + | chr4.1:68903611-68903630 | None:intergenic | 25.0% |
| !! | GAACATTCTTGTTATATAGT+GGG | - | chr4.1:68903525-68903544 | MS.gene067650:CDS | 25.0% |
| !! | GTTTAAAGAACTAAAGGTAT+AGG | - | chr4.1:68903880-68903899 | MS.gene067650:intron | 25.0% |
| !! | TATATAGTGGGAAAAAGATA+AGG | - | chr4.1:68903537-68903556 | MS.gene067650:CDS | 25.0% |
| !! | TGAACATTCTTGTTATATAG+TGG | - | chr4.1:68903524-68903543 | MS.gene067650:CDS | 25.0% |
| !! | TGTTCTAAACATGAAATCTA+TGG | - | chr4.1:68904509-68904528 | MS.gene067650:intron | 25.0% |
| !! | TTTTCCAAGAATACTATTTC+CGG | + | chr4.1:68902826-68902845 | None:intergenic | 25.0% |
| !!! | GCATAATCTAAGATTGATTT+TGG | - | chr4.1:68904554-68904573 | MS.gene067650:intron | 25.0% |
| !!! | GTTGTTTTGGTAGTTAAATA+GGG | - | chr4.1:68904252-68904271 | MS.gene067650:CDS | 25.0% |
| !!! | TATCCTTTTTTTTGGTTCAT+TGG | - | chr4.1:68903404-68903423 | MS.gene067650:intron | 25.0% |
| !!! | TCTTAATCCTTTGGTTTTTA+GGG | - | chr4.1:68904358-68904377 | MS.gene067650:CDS | 25.0% |
| !!! | TTGTTTTGGTAGTTAAATAG+GGG | - | chr4.1:68904253-68904272 | MS.gene067650:CDS | 25.0% |
| ACTTTCTTGTCTTAATCCTT+TGG | - | chr4.1:68904349-68904368 | MS.gene067650:CDS | 30.0% | |
| ATATCAATGAATTCGTCGTT+TGG | - | chr4.1:68903954-68903973 | MS.gene067650:intron | 30.0% | |
| CAAGTTAAAACATCTTTACC+TGG | + | chr4.1:68902951-68902970 | None:intergenic | 30.0% | |
| GACCAATAATGATTTCAACT+AGG | - | chr4.1:68904429-68904448 | MS.gene067650:CDS | 30.0% | |
| GCTAAATAAGAACACATACA+AGG | + | chr4.1:68903484-68903503 | None:intergenic | 30.0% | |
| GGAAGAAAATAATGAAACAC+TGG | - | chr4.1:68903332-68903351 | MS.gene067650:intron | 30.0% | |
| TAAATAGGGGAAATTGTAAC+GGG | - | chr4.1:68904266-68904285 | MS.gene067650:CDS | 30.0% | |
| TACATGATTATCGTCTTTAC+CGG | - | chr4.1:68903297-68903316 | MS.gene067650:intron | 30.0% | |
| TCTATTAAGAGATTCAGCAA+TGG | + | chr4.1:68903665-68903684 | None:intergenic | 30.0% | |
| ! | ATAAAAACCTTTAAAGGCTC+TGG | + | chr4.1:68903381-68903400 | None:intergenic | 30.0% |
| ! | CAAACTTTGTTTACCTTTAC+AGG | - | chr4.1:68903093-68903112 | MS.gene067650:intron | 30.0% |
| ! | CATGAAATCTATGGTCTTAA+TGG | - | chr4.1:68904518-68904537 | MS.gene067650:intron | 30.0% |
| !! | AATAGTCAAGTGCATTGATT+TGG | - | chr4.1:68903158-68903177 | MS.gene067650:intron | 30.0% |
| !! | GCAATGGATTTTCAAAAACT+AGG | + | chr4.1:68903649-68903668 | None:intergenic | 30.0% |
| !! | GGATTATTTGATTTTTCGGT+TGG | - | chr4.1:68903114-68903133 | MS.gene067650:intron | 30.0% |
| !!! | GGTTGTTTTGGTAGTTAAAT+AGG | - | chr4.1:68904251-68904270 | MS.gene067650:CDS | 30.0% |
| !!! | GTCTTAATCCTTTGGTTTTT+AGG | - | chr4.1:68904357-68904376 | MS.gene067650:CDS | 30.0% |
| AACGTGGTAATATCACAGAA+TGG | - | chr4.1:68903833-68903852 | MS.gene067650:CDS | 35.0% | |
| AAGAGAGAAGTTGTTGAACT+TGG | + | chr4.1:68903808-68903827 | None:intergenic | 35.0% | |
| ACATGATTATCGTCTTTACC+GGG | - | chr4.1:68903298-68903317 | MS.gene067650:intron | 35.0% | |
| AGAAGCAAACTCCCAATTAT+CGG | + | chr4.1:68902733-68902752 | None:intergenic | 35.0% | |
| AGAATACTACAATTAAGGCG+TGG | + | chr4.1:68903197-68903216 | None:intergenic | 35.0% | |
| CAAACAACTGAGCTTAATGA+TGG | - | chr4.1:68902900-68902919 | MS.gene067650:CDS | 35.0% | |
| CATCCTTAGTTGGGATATAA+GGG | - | chr4.1:68904323-68904342 | MS.gene067650:CDS | 35.0% | |
| TTAGAACTTTCCCCAAAAGT+TGG | + | chr4.1:68903457-68903476 | None:intergenic | 35.0% | |
| ! | AAAACTGAAGCATCCTTAGT+TGG | - | chr4.1:68904313-68904332 | MS.gene067650:CDS | 35.0% |
| ! | AAACTGAAGCATCCTTAGTT+GGG | - | chr4.1:68904314-68904333 | MS.gene067650:CDS | 35.0% |
| ! | GCTTTTCGATAACAAGACTA+AGG | - | chr4.1:68903763-68903782 | MS.gene067650:CDS | 35.0% |
| ! | TAATATCACAGAATGGTGGA+CGG | - | chr4.1:68903840-68903859 | MS.gene067650:intron | 35.0% |
| ! | TTATGGTCTGAAAAAGTGTG+CGG | - | chr4.1:68904145-68904164 | MS.gene067650:intron | 35.0% |
| !! | ACCTGTTTTTCTCCAACTTT+TGG | - | chr4.1:68903442-68903461 | MS.gene067650:intron | 35.0% |
| !! | ATTCACAATACCGACTTGAA+AGG | + | chr4.1:68904181-68904200 | None:intergenic | 35.0% |
| !! | CCTGTTTTTCTCCAACTTTT+GGG | - | chr4.1:68903443-68903462 | MS.gene067650:intron | 35.0% |
| !! | CTGTTTTTCTCCAACTTTTG+GGG | - | chr4.1:68903444-68903463 | MS.gene067650:intron | 35.0% |
| !! | TCTTAATGGTGTTGATCATG+TGG | - | chr4.1:68904532-68904551 | MS.gene067650:intron | 35.0% |
| !!! | AATCCTTTGGTTTTTAGGGA+AGG | - | chr4.1:68904362-68904381 | MS.gene067650:CDS | 35.0% |
| !!! | ATCCTTTGGTTTTTAGGGAA+GGG | - | chr4.1:68904363-68904382 | MS.gene067650:CDS | 35.0% |
| ACTCAGAAGAAATCTTGAGC+AGG | - | chr4.1:68904734-68904753 | MS.gene067650:CDS | 40.0% | |
| AGGCAATTCTTTCTCTGTGT+GGG | - | chr4.1:68903729-68903748 | MS.gene067650:CDS | 40.0% | |
| AGTTGTTTGCATTTCGCATG+AGG | + | chr4.1:68902889-68902908 | None:intergenic | 40.0% | |
| ATACATGTCATAGTGCCAGT+CGG | - | chr4.1:68904230-68904249 | MS.gene067650:CDS | 40.0% | |
| ATCCCTTCCCTAAAAACCAA+AGG | + | chr4.1:68904368-68904387 | None:intergenic | 40.0% | |
| ATCCCTTGTAATCCAAAGGT+TGG | - | chr4.1:68904386-68904405 | MS.gene067650:CDS | 40.0% | |
| ATGATTATCGTCTTTACCGG+GGG | - | chr4.1:68903300-68903319 | MS.gene067650:intron | 40.0% | |
| CAAAACCAAAGTCTTAGCCT+CGG | + | chr4.1:68902772-68902791 | None:intergenic | 40.0% | |
| CATGATTATCGTCTTTACCG+GGG | - | chr4.1:68903299-68903318 | MS.gene067650:intron | 40.0% | |
| CCCAAAAGTTGGAGAAAAAC+AGG | + | chr4.1:68903446-68903465 | None:intergenic | 40.0% | |
| GAAAAAAGGTCTTCAAGTCG+AGG | - | chr4.1:68902841-68902860 | MS.gene067650:CDS | 40.0% | |
| GAAACACTGGACCAGTATTT+AGG | - | chr4.1:68903345-68903364 | MS.gene067650:intron | 40.0% | |
| GCAACCGGAAATAGTATTCT+TGG | - | chr4.1:68902819-68902838 | MS.gene067650:CDS | 40.0% | |
| GCATCCTTAGTTGGGATATA+AGG | - | chr4.1:68904322-68904341 | MS.gene067650:CDS | 40.0% | |
| GCTGCAAAAACAACAAAGAG+AGG | - | chr4.1:68903997-68904016 | MS.gene067650:intron | 40.0% | |
| GTAGGTAGAGTCAAAGTTGA+GGG | - | chr4.1:68904602-68904621 | MS.gene067650:intron | 40.0% | |
| GTGGTAATATCACAGAATGG+TGG | - | chr4.1:68903836-68903855 | MS.gene067650:intron | 40.0% | |
| GTTCCCTTATATCCCAACTA+AGG | + | chr4.1:68904329-68904348 | None:intergenic | 40.0% | |
| TAACTACCAAAACAACCGAC+TGG | + | chr4.1:68904248-68904267 | None:intergenic | 40.0% | |
| TACAAGGTTGGAGGAACAAT+TGG | - | chr4.1:68904632-68904651 | MS.gene067650:CDS | 40.0% | |
| TCGGTTGGAATTGAACTACT+TGG | - | chr4.1:68903129-68903148 | MS.gene067650:intron | 40.0% | |
| TGTAGGTAGAGTCAAAGTTG+AGG | - | chr4.1:68904601-68904620 | MS.gene067650:intron | 40.0% | |
| TGTTAGAACACGCTTTACTG+AGG | - | chr4.1:68903218-68903237 | MS.gene067650:intron | 40.0% | |
| TTGGCTTCAGAAACGAGAAA+TGG | - | chr4.1:68903973-68903992 | MS.gene067650:intron | 40.0% | |
| ! | ACTCAGAAGACATTTTGAGC+AGG | - | chr4.1:68904803-68904822 | MS.gene067650:CDS | 40.0% |
| ! | ACTTCTCTCTTTTGTGAACG+TGG | - | chr4.1:68903817-68903836 | MS.gene067650:CDS | 40.0% |
| ! | GTATCACTCACCTTTCAAGT+CGG | - | chr4.1:68904168-68904187 | MS.gene067650:intron | 40.0% |
| ! | TATGGTCTGAAAAAGTGTGC+GGG | - | chr4.1:68904146-68904165 | MS.gene067650:intron | 40.0% |
| !! | CAAGTGCATTGATTTGGCAA+AGG | - | chr4.1:68903164-68903183 | MS.gene067650:intron | 40.0% |
| !! | TGCATTGATTTGGCAAAGGA+CGG | - | chr4.1:68903168-68903187 | MS.gene067650:intron | 40.0% |
| !!! | GCTAAGACTTTGGTTTTGCT+TGG | - | chr4.1:68902774-68902793 | MS.gene067650:CDS | 40.0% |
| AGAATGGCACAACGATCTTC+TGG | + | chr4.1:68904855-68904874 | None:intergenic | 45.0% | |
| AGAGAGGCTGATGCATTGAA+AGG | - | chr4.1:68904013-68904032 | MS.gene067650:intron | 45.0% | |
| AGGGATCCCTTGTAATCCAA+AGG | - | chr4.1:68904382-68904401 | MS.gene067650:CDS | 45.0% | |
| ATGATGTATCTTGAGCTCGC+AGG | + | chr4.1:68904776-68904795 | None:intergenic | 45.0% | |
| CAGGCAATTCTTTCTCTGTG+TGG | - | chr4.1:68903728-68903747 | MS.gene067650:CDS | 45.0% | |
| CGAGATTTCTGATCAAGTCG+TGG | + | chr4.1:68902988-68903007 | None:intergenic | 45.0% | |
| CGATTGTCCAGAGCCTTTAA+AGG | - | chr4.1:68903371-68903390 | MS.gene067650:intron | 45.0% | |
| CGGAGCGTGCAGAAATTATT+CGG | - | chr4.1:68903258-68903277 | MS.gene067650:intron | 45.0% | |
| GACAATCGCGACCTAAATAC+TGG | + | chr4.1:68903359-68903378 | None:intergenic | 45.0% | |
| GCTGAATCGCATTACTGAGA+TGG | - | chr4.1:68904096-68904115 | MS.gene067650:intron | 45.0% | |
| GGCCAACCTTTGGATTACAA+GGG | + | chr4.1:68904391-68904410 | None:intergenic | 45.0% | |
| GTCGGACTTTACTTAGCTTC+TGG | + | chr4.1:68904412-68904431 | None:intergenic | 45.0% | |
| GTGAATGTTATCGACACTCC+AGG | - | chr4.1:68902930-68902949 | MS.gene067650:CDS | 45.0% | |
| TCTCAGTAATGCGATTCAGC+TGG | + | chr4.1:68904096-68904115 | None:intergenic | 45.0% | |
| TGGCCAACCTTTGGATTACA+AGG | + | chr4.1:68904392-68904411 | None:intergenic | 45.0% | |
| TGTTTGCATTTCGCATGAGG+TGG | + | chr4.1:68902886-68902905 | None:intergenic | 45.0% | |
| TTCTTCCAATTCATCTCCCC+CGG | + | chr4.1:68903319-68903338 | None:intergenic | 45.0% | |
| TTGTTCTTCTATGTCGACCG+AGG | - | chr4.1:68902752-68902771 | MS.gene067650:CDS | 45.0% | |
| ! | AGACATTTTGAGCAGGCACA+AGG | - | chr4.1:68904810-68904829 | MS.gene067650:CDS | 45.0% |
| ! | ATAGTGCCAGTCGGTTGTTT+TGG | - | chr4.1:68904239-68904258 | MS.gene067650:CDS | 45.0% |
| ! | GGGAAATTGTAACGGGAATG+TGG | - | chr4.1:68904273-68904292 | MS.gene067650:CDS | 45.0% |
| !! | AGGAAGAAGAGAGTGCTCTA+CGG | - | chr4.1:68903238-68903257 | MS.gene067650:intron | 45.0% |
| !! | AGGTCTTGGTGCCGATAATT+GGG | - | chr4.1:68902719-68902738 | MS.gene067650:CDS | 45.0% |
| !!! | TTGGTTTTGCTTGGACGTAC+CGG | - | chr4.1:68902783-68902802 | MS.gene067650:CDS | 45.0% |
| AGAGCAAGCTGCAAGACTAG+AGG | - | chr4.1:68904659-68904678 | MS.gene067650:CDS | 50.0% | |
| AGTTGAGGGCAGCAACTACA+AGG | - | chr4.1:68904616-68904635 | MS.gene067650:intron | 50.0% | |
| ATGGGGGAAAGTTCAGGTCT+TGG | - | chr4.1:68902705-68902724 | MS.gene067650:CDS | 50.0% | |
| CTTAGCTTCTGGCCAACCTT+TGG | + | chr4.1:68904401-68904420 | None:intergenic | 50.0% | |
| CTTTACCGGGGGAGATGAAT+TGG | - | chr4.1:68903311-68903330 | MS.gene067650:intron | 50.0% | |
| ! | GTAACGGGAATGTGGCACTT+AGG | - | chr4.1:68904281-68904300 | MS.gene067650:CDS | 50.0% |
| !! | AAGTCGAGGACTAGCTCTTC+CGG | - | chr4.1:68902855-68902874 | MS.gene067650:CDS | 50.0% |
| !! | CAGGTCTTGGTGCCGATAAT+TGG | - | chr4.1:68902718-68902737 | MS.gene067650:CDS | 50.0% |
| !! | TGGTTTTGCTTGGACGTACC+GGG | - | chr4.1:68902784-68902803 | MS.gene067650:CDS | 50.0% |
| AGGCACAAGGAGAACTTCGC+AGG | - | chr4.1:68904823-68904842 | MS.gene067650:CDS | 55.0% | |
| GAGGGCAGCAACTACAAGGT+TGG | - | chr4.1:68904620-68904639 | MS.gene067650:intron | 55.0% | |
| GCAAGCTGCAAGACTAGAGG+CGG | - | chr4.1:68904662-68904681 | MS.gene067650:CDS | 55.0% | |
| GGCAGCAACTACAAGGTTGG+AGG | - | chr4.1:68904623-68904642 | MS.gene067650:intron | 55.0% | |
| GGTTGCACTCTTCCCATTCC+CGG | + | chr4.1:68902805-68902824 | None:intergenic | 55.0% | |
| GTCGACCGAGGCTAAGACTT+TGG | - | chr4.1:68902764-68902783 | MS.gene067650:CDS | 55.0% | |
| TGCTTGGACGTACCGGGAAT+GGG | - | chr4.1:68902790-68902809 | MS.gene067650:CDS | 55.0% | |
| TTCGCATGAGGTGGTGACAC+CGG | + | chr4.1:68902877-68902896 | None:intergenic | 55.0% | |
| TTGCTTGGACGTACCGGGAA+TGG | - | chr4.1:68902789-68902808 | MS.gene067650:CDS | 55.0% | |
| ! | GGGAATGGGAAGAGTGCAAC+CGG | - | chr4.1:68902804-68902823 | MS.gene067650:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 68902705 | 68904878 | 68902705 | ID=MS.gene067650 |
| chr4.1 | mRNA | 68902705 | 68904878 | 68902705 | ID=MS.gene067650.t1;Parent=MS.gene067650 |
| chr4.1 | exon | 68904632 | 68904878 | 68904632 | ID=MS.gene067650.t1.exon1;Parent=MS.gene067650.t1 |
| chr4.1 | CDS | 68904632 | 68904878 | 68904632 | ID=cds.MS.gene067650.t1;Parent=MS.gene067650.t1 |
| chr4.1 | exon | 68904191 | 68904468 | 68904191 | ID=MS.gene067650.t1.exon2;Parent=MS.gene067650.t1 |
| chr4.1 | CDS | 68904191 | 68904468 | 68904191 | ID=cds.MS.gene067650.t1;Parent=MS.gene067650.t1 |
| chr4.1 | exon | 68903688 | 68903852 | 68903688 | ID=MS.gene067650.t1.exon3;Parent=MS.gene067650.t1 |
| chr4.1 | CDS | 68903688 | 68903852 | 68903688 | ID=cds.MS.gene067650.t1;Parent=MS.gene067650.t1 |
| chr4.1 | exon | 68903466 | 68903600 | 68903466 | ID=MS.gene067650.t1.exon4;Parent=MS.gene067650.t1 |
| chr4.1 | CDS | 68903466 | 68903600 | 68903466 | ID=cds.MS.gene067650.t1;Parent=MS.gene067650.t1 |
| chr4.1 | exon | 68902705 | 68902977 | 68902705 | ID=MS.gene067650.t1.exon5;Parent=MS.gene067650.t1 |
| chr4.1 | CDS | 68902705 | 68902977 | 68902705 | ID=cds.MS.gene067650.t1;Parent=MS.gene067650.t1 |
| Gene Sequence |
| Protein sequence |
