Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068020.t1 | XP_003610866.2 | 97.4 | 312 | 8 | 0 | 1 | 312 | 1 | 312 | 4.00E-121 | 444.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068020.t1 | Q5M882 | 38.0 | 100 | 58 | 2 | 213 | 308 | 105 | 204 | 1.3e-11 | 72.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068020.t1 | G7K6I6 | 97.4 | 312 | 8 | 0 | 1 | 312 | 1 | 312 | 2.9e-121 | 444.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053583 | MS.gene068020 | 0.900717 | 5.54E-78 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04750 | MS.gene068020 | PPI |
| MS.gene05906 | MS.gene068020 | PPI |
| MS.gene068020 | MS.gene015759 | PPI |
| MS.gene068020 | MS.gene049112 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068020.t1 | MTR_5g007880 | 96.154 | 312 | 12 | 0 | 1 | 312 | 1 | 312 | 0.0 | 627 |
| MS.gene068020.t1 | MTR_5g007880 | 96.071 | 280 | 11 | 0 | 1 | 280 | 1 | 280 | 0.0 | 562 |
| MS.gene068020.t1 | MTR_5g014220 | 76.923 | 39 | 9 | 0 | 115 | 153 | 43 | 81 | 2.71e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068020.t1 | AT2G43190 | 54.274 | 234 | 102 | 2 | 75 | 308 | 62 | 290 | 8.15e-84 | 254 |
| MS.gene068020.t1 | AT2G43190 | 54.274 | 234 | 102 | 2 | 75 | 308 | 62 | 290 | 8.15e-84 | 254 |
| MS.gene068020.t1 | AT2G43190 | 57.407 | 216 | 91 | 1 | 93 | 308 | 75 | 289 | 2.27e-83 | 253 |
| MS.gene068020.t1 | AT2G43190 | 57.407 | 216 | 91 | 1 | 93 | 308 | 75 | 289 | 2.27e-83 | 253 |
| MS.gene068020.t1 | AT2G43190 | 44.017 | 234 | 91 | 2 | 75 | 308 | 62 | 255 | 8.57e-57 | 184 |
Find 58 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGAAACTGCAGAAGCTTT+TGG | 0.202603 | 4.3:+20925785 | MS.gene068020:CDS |
| GAAAGAGGAGGTTCAGTTTC+CGG | 0.213770 | 4.3:+20924240 | MS.gene068020:CDS |
| TGCCACCAGTTCCAGTAAAA+TGG | 0.225932 | 4.3:-20925754 | None:intergenic |
| AACTTACTTATGGAACTCTT+TGG | 0.264485 | 4.3:-20924481 | None:intergenic |
| GAAAATCTGCTCACAACTAA+TGG | 0.271857 | 4.3:+20924058 | MS.gene068020:CDS |
| TAAAATTGAATTACCTTTGT+TGG | 0.337100 | 4.3:-20923192 | None:intergenic |
| AAAATCTGCTCACAACTAAT+GGG | 0.354040 | 4.3:+20924059 | MS.gene068020:CDS |
| TTGTACTACAAGTTGATTGC+TGG | 0.357928 | 4.3:+20926806 | MS.gene068020:CDS |
| ACAGAAAGTTGGGCATATTC+TGG | 0.385740 | 4.3:-20924025 | None:intergenic |
| TCCGATGATGGACGACATAA+AGG | 0.385790 | 4.3:-20923164 | None:intergenic |
| GAAACGTGCAATGGAGGCTT+TGG | 0.387822 | 4.3:+20922983 | MS.gene068020:CDS |
| AAAATTGAATTACCTTTGTT+GGG | 0.395569 | 4.3:-20923191 | None:intergenic |
| AAGAAGTTCATGCAATATTC+CGG | 0.396909 | 4.3:-20924259 | None:intergenic |
| GAAGTAGAGGGTGGTGGAGT+AGG | 0.406154 | 4.3:-20923125 | None:intergenic |
| CATTTACAGTCACAGAAAGT+TGG | 0.409130 | 4.3:-20924036 | None:intergenic |
| AAACTAGATTCAAGAAAGGT+TGG | 0.424013 | 4.3:+20926850 | MS.gene068020:CDS |
| ATTTACAGTCACAGAAAGTT+GGG | 0.425288 | 4.3:-20924035 | None:intergenic |
| ACTTACTTATGGAACTCTTT+GGG | 0.426320 | 4.3:-20924480 | None:intergenic |
| TTCATTCAAAACGTTCTAAG+AGG | 0.430799 | 4.3:+20924412 | MS.gene068020:CDS |
| CAGTACAGTACCTTGTGAAA+TGG | 0.436121 | 4.3:-20923858 | None:intergenic |
| TGCTGGAAAGCCACTCTGCT+TGG | 0.452437 | 4.3:+20926823 | MS.gene068020:CDS |
| TTGTTCCAGGAATAATCAAT+TGG | 0.458394 | 4.3:+20924921 | MS.gene068020:intron |
| AAGTTGTTGCTTAAATCCAC+TGG | 0.460350 | 4.3:+20924787 | MS.gene068020:CDS |
| GCCTTTATGTCGTCCATCAT+CGG | 0.460662 | 4.3:+20923163 | MS.gene068020:CDS |
| GCCACCAGTTCCAGTAAAAT+GGG | 0.464672 | 4.3:-20925753 | None:intergenic |
| TTCTTCATCTTCTCAGACAA+GGG | 0.467025 | 4.3:+20924380 | MS.gene068020:CDS |
| AATTGCAGTTGTTCCGAAGA+AGG | 0.469187 | 4.3:+20926774 | MS.gene068020:intron |
| TATCAATGGCTGCTGAATCA+AGG | 0.478212 | 4.3:+20922961 | None:intergenic |
| ACAAATACAGAACCCTTCTT+CGG | 0.485262 | 4.3:-20926787 | None:intergenic |
| CAATTGGCTCAATGTCTCCT+AGG | 0.493446 | 4.3:+20924937 | MS.gene068020:CDS |
| TTTCTTCATCTTCTCAGACA+AGG | 0.512698 | 4.3:+20924379 | MS.gene068020:CDS |
| TCTTTCCACATGTCATGCAT+TGG | 0.514242 | 4.3:-20924757 | None:intergenic |
| TTGTTGGGTGTATCCGATGA+TGG | 0.532259 | 4.3:-20923176 | None:intergenic |
| ATTGCAGTTGTTCCGAAGAA+GGG | 0.540540 | 4.3:+20926775 | MS.gene068020:intron |
| CTTGCACAAAATTATCAAGA+AGG | 0.550602 | 4.3:-20924347 | None:intergenic |
| ATTGCATGAACTTCTTCAGA+AGG | 0.551548 | 4.3:+20924266 | MS.gene068020:CDS |
| TCATTAGAAGTAGAGGGTGG+TGG | 0.559781 | 4.3:-20923131 | None:intergenic |
| AGATAAACTAGATTCAAGAA+AGG | 0.561327 | 4.3:+20926846 | MS.gene068020:CDS |
| ACTGAAGCTAATAAATTCCA+AGG | 0.566213 | 4.3:+20925815 | MS.gene068020:CDS |
| TTTGGTCGTGCCATTTCACA+AGG | 0.566627 | 4.3:+20923848 | MS.gene068020:CDS |
| CTCCTAGGTGCAGATCTACA+TGG | 0.569680 | 4.3:+20924952 | MS.gene068020:CDS |
| GGACGGATCATTAGAAGTAG+AGG | 0.570525 | 4.3:-20923138 | None:intergenic |
| ATCAAGGAAACGTGCAATGG+AGG | 0.577785 | 4.3:+20922977 | MS.gene068020:CDS |
| TAATCTGTAGAGAAAGAAGA+TGG | 0.577837 | 4.3:+20924001 | MS.gene068020:intron |
| TTGCATGAACTTCTTCAGAA+GGG | 0.595042 | 4.3:+20924267 | MS.gene068020:CDS |
| AGTTGTTGCTTAAATCCACT+GGG | 0.610453 | 4.3:+20924788 | MS.gene068020:CDS |
| TCAAGCCAATGCATGACATG+TGG | 0.623887 | 4.3:+20924752 | MS.gene068020:CDS |
| GGACGACATAAAGGCAAGGA+CGG | 0.625054 | 4.3:-20923155 | None:intergenic |
| GACGGATCATTAGAAGTAGA+GGG | 0.632740 | 4.3:-20923137 | None:intergenic |
| GCAGCACAAAAGTACATGCA+AGG | 0.640542 | 4.3:+20924294 | MS.gene068020:CDS |
| TCTGCTCACAACTAATGGGG+AGG | 0.647144 | 4.3:+20924063 | MS.gene068020:CDS |
| TGAATCAAGGAAACGTGCAA+TGG | 0.657298 | 4.3:+20922974 | MS.gene068020:CDS |
| AAATCTGCTCACAACTAATG+GGG | 0.672764 | 4.3:+20924060 | MS.gene068020:CDS |
| TCATCGGATACACCCAACAA+AGG | 0.673500 | 4.3:+20923179 | MS.gene068020:CDS |
| TAGTTTATCTCCAAGCAGAG+TGG | 0.678445 | 4.3:-20926833 | None:intergenic |
| TGATGGACGACATAAAGGCA+AGG | 0.683011 | 4.3:-20923159 | None:intergenic |
| CACCATGTAGATCTGCACCT+AGG | 0.706017 | 4.3:-20924954 | None:intergenic |
| GGATCATTAGAAGTAGAGGG+TGG | 0.734876 | 4.3:-20923134 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAAAAATCAAAGTATT+TGG | - | chr4.3:20926758-20926777 | None:intergenic | 10.0% |
| !!! | TTGATAATTAATGAATTATA+AGG | + | chr4.3:20925978-20925997 | MS.gene068020:intron | 10.0% |
| !! | AAAAGAAAAGAAAAACAAAA+GGG | + | chr4.3:20923034-20923053 | MS.gene068020:CDS | 15.0% |
| !! | TAAAAGAAAAGAAAAACAAA+AGG | + | chr4.3:20923033-20923052 | MS.gene068020:CDS | 15.0% |
| !! | TGAGTAAAAAAAAAATCAAT+AGG | - | chr4.3:20926421-20926440 | None:intergenic | 15.0% |
| !!! | AAGAATTTTGAAAAGAAAAT+AGG | - | chr4.3:20926524-20926543 | None:intergenic | 15.0% |
| !!! | AATATTTGTATTTGTTTTGA+AGG | - | chr4.3:20925646-20925665 | None:intergenic | 15.0% |
| !!! | ATTTCATTTTCTTAGTAAAA+GGG | - | chr4.3:20926548-20926567 | None:intergenic | 15.0% |
| !!! | TATTTCATTTTCTTAGTAAA+AGG | - | chr4.3:20926549-20926568 | None:intergenic | 15.0% |
| !!! | TTTGCTTATGATTATTTTTA+AGG | + | chr4.3:20923541-20923560 | MS.gene068020:intron | 15.0% |
| !!! | TTTTTTATTTCCTTTTCTTA+GGG | + | chr4.3:20923813-20923832 | MS.gene068020:intron | 15.0% |
| !! | AAAATTGAATTACCTTTGTT+GGG | - | chr4.3:20923194-20923213 | None:intergenic | 20.0% |
| !! | AATATTTCATATGCATAGAA+AGG | + | chr4.3:20925160-20925179 | MS.gene068020:intron | 20.0% |
| !! | AGTCATTCTTATAAACAATA+TGG | + | chr4.3:20926265-20926284 | MS.gene068020:intron | 20.0% |
| !! | ATAATTCCAAAAAGTCAATA+TGG | + | chr4.3:20924113-20924132 | MS.gene068020:intron | 20.0% |
| !! | ATGAAACAACATAAAAAACA+TGG | + | chr4.3:20924444-20924463 | MS.gene068020:CDS | 20.0% |
| !! | ATTTGTAACTTCAATTTATG+TGG | + | chr4.3:20923957-20923976 | MS.gene068020:intron | 20.0% |
| !! | TAAAATTGAATTACCTTTGT+TGG | - | chr4.3:20923195-20923214 | None:intergenic | 20.0% |
| !! | TTTGTAACTTCAATTTATGT+GGG | + | chr4.3:20923958-20923977 | MS.gene068020:intron | 20.0% |
| !!! | AAAGCTCTAGATAAATAAAA+TGG | - | chr4.3:20925061-20925080 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTATGTTGTTTCA+TGG | - | chr4.3:20924445-20924464 | None:intergenic | 20.0% |
| !!! | ATTCTATTTTAAGTAGTGAA+AGG | - | chr4.3:20925845-20925864 | None:intergenic | 20.0% |
| !!! | ATTTGCTACATATAATTGTA+CGG | + | chr4.3:20926361-20926380 | MS.gene068020:intron | 20.0% |
| !!! | CTCTATTTTTGTTTTGTTTT+TGG | + | chr4.3:20925000-20925019 | MS.gene068020:intron | 20.0% |
| !!! | CTTTTTTATTTCCTTTTCTT+AGG | + | chr4.3:20923812-20923831 | MS.gene068020:intron | 20.0% |
| !!! | TACATTTTATGGAAGTATTT+TGG | + | chr4.3:20924519-20924538 | MS.gene068020:intron | 20.0% |
| !!! | TCATAATTTTCTTTTCTTTC+AGG | - | chr4.3:20923079-20923098 | None:intergenic | 20.0% |
| !!! | TTTATTTATCTAGAGCTTTT+TGG | + | chr4.3:20925062-20925081 | MS.gene068020:intron | 20.0% |
| !!! | TTTCATTTTCTTAGTAAAAG+GGG | - | chr4.3:20926547-20926566 | None:intergenic | 20.0% |
| !!! | TTTTGATCTAACTAAAACTT+TGG | - | chr4.3:20926500-20926519 | None:intergenic | 20.0% |
| ! | AAAAAAAAATCCCAAGTGTA+AGG | - | chr4.3:20925435-20925454 | None:intergenic | 25.0% |
| ! | AAAACTTCAACTTAAGCAAA+TGG | - | chr4.3:20926676-20926695 | None:intergenic | 25.0% |
| ! | AAGTCAAATTAGAACAAACA+GGG | - | chr4.3:20924194-20924213 | None:intergenic | 25.0% |
| ! | ACAATTATATGTAGCAAATC+TGG | - | chr4.3:20926360-20926379 | None:intergenic | 25.0% |
| ! | ACATAAAAAACATGGATCAA+TGG | + | chr4.3:20924452-20924471 | MS.gene068020:CDS | 25.0% |
| ! | AGATAAACTAGATTCAAGAA+AGG | + | chr4.3:20926846-20926865 | MS.gene068020:CDS | 25.0% |
| ! | GCTTATATGTTTGAATGTAA+AGG | + | chr4.3:20926142-20926161 | MS.gene068020:intron | 25.0% |
| ! | TAACTAGCAGACAATTATTT+AGG | - | chr4.3:20925682-20925701 | None:intergenic | 25.0% |
| ! | TAAGTCAAATTAGAACAAAC+AGG | - | chr4.3:20924195-20924214 | None:intergenic | 25.0% |
| !! | ACTATGCTGAATTTTCAAAA+CGG | - | chr4.3:20926015-20926034 | None:intergenic | 25.0% |
| !! | CAACTCTTTTCTAAATTCAA+AGG | - | chr4.3:20925610-20925629 | None:intergenic | 25.0% |
| !! | GAACTAATGTTGAATGTTTT+AGG | + | chr4.3:20925466-20925485 | MS.gene068020:intron | 25.0% |
| !! | GTAAAAAAAGTACATGTATG+TGG | + | chr4.3:20923501-20923520 | MS.gene068020:intron | 25.0% |
| !! | GTCTCTAAACTTACATTTTA+TGG | + | chr4.3:20924508-20924527 | MS.gene068020:intron | 25.0% |
| !! | TACTTATATTTAAAGCCTGA+TGG | - | chr4.3:20923484-20923503 | None:intergenic | 25.0% |
| !! | TGGAAATAAATACGCTTTTA+TGG | + | chr4.3:20923302-20923321 | MS.gene068020:intron | 25.0% |
| !! | TTTTCATTTCGTCTTTCATT+GGG | + | chr4.3:20924589-20924608 | MS.gene068020:intron | 25.0% |
| !! | TTTTTCATTTCGTCTTTCAT+TGG | + | chr4.3:20924588-20924607 | MS.gene068020:intron | 25.0% |
| !!! | CTTATGATTATTTTTAAGGC+TGG | + | chr4.3:20923545-20923564 | MS.gene068020:intron | 25.0% |
| !!! | GAGTTCTCACTTTTTATTTA+GGG | + | chr4.3:20926465-20926484 | MS.gene068020:intron | 25.0% |
| !!! | TGAGTTCTCACTTTTTATTT+AGG | + | chr4.3:20926464-20926483 | MS.gene068020:intron | 25.0% |
| !!! | TTCTACATTTTGATTTCTGA+AGG | + | chr4.3:20923917-20923936 | MS.gene068020:intron | 25.0% |
| AAAATCTGCTCACAACTAAT+GGG | + | chr4.3:20924059-20924078 | MS.gene068020:CDS | 30.0% | |
| AAACTAGATTCAAGAAAGGT+TGG | + | chr4.3:20926850-20926869 | MS.gene068020:CDS | 30.0% | |
| AACTTACTTATGGAACTCTT+TGG | - | chr4.3:20924484-20924503 | None:intergenic | 30.0% | |
| AAGAAGTTCATGCAATATTC+CGG | - | chr4.3:20924262-20924281 | None:intergenic | 30.0% | |
| ACTGAAGCTAATAAATTCCA+AGG | + | chr4.3:20925815-20925834 | MS.gene068020:CDS | 30.0% | |
| ACTTACTTATGGAACTCTTT+GGG | - | chr4.3:20924483-20924502 | None:intergenic | 30.0% | |
| ACTTATTCAGTATGACACTT+GGG | + | chr4.3:20923244-20923263 | MS.gene068020:intron | 30.0% | |
| ATATGGCTGAGATTCTTATT+TGG | + | chr4.3:20926282-20926301 | MS.gene068020:intron | 30.0% | |
| ATGTGACACTTGCATTATTA+TGG | + | chr4.3:20926603-20926622 | MS.gene068020:intron | 30.0% | |
| ATTCAAATGAGAAACATTCC+CGG | - | chr4.3:20925367-20925386 | None:intergenic | 30.0% | |
| ATTTACAGTCACAGAAAGTT+GGG | - | chr4.3:20924038-20924057 | None:intergenic | 30.0% | |
| CATTAATACTTGAGAAACAC+AGG | - | chr4.3:20925896-20925915 | None:intergenic | 30.0% | |
| CTTGCACAAAATTATCAAGA+AGG | - | chr4.3:20924350-20924369 | None:intergenic | 30.0% | |
| GATATTCTTAGATTCATGCT+AGG | + | chr4.3:20924611-20924630 | MS.gene068020:intron | 30.0% | |
| TAAATACTTGCATGACTGTT+TGG | - | chr4.3:20923716-20923735 | None:intergenic | 30.0% | |
| TAATCTGTAGAGAAAGAAGA+TGG | + | chr4.3:20924001-20924020 | MS.gene068020:intron | 30.0% | |
| TACTAAAGATATAACCTGAC+AGG | - | chr4.3:20926322-20926341 | None:intergenic | 30.0% | |
| TTATATGTAGCAAATCTGGT+TGG | - | chr4.3:20926356-20926375 | None:intergenic | 30.0% | |
| TTATTCCTGGAACAATAAAC+AGG | - | chr4.3:20924916-20924935 | None:intergenic | 30.0% | |
| TTGCATTATTATGGCTGAAT+TGG | + | chr4.3:20926612-20926631 | MS.gene068020:intron | 30.0% | |
| TTGGATGTTAATTATTCCCA+CGG | + | chr4.3:20925116-20925135 | MS.gene068020:intron | 30.0% | |
| TTGTTCCAGGAATAATCAAT+TGG | + | chr4.3:20924921-20924940 | MS.gene068020:intron | 30.0% | |
| ! | GAGAAGATGTATTTTATGAC+AGG | + | chr4.3:20926188-20926207 | MS.gene068020:intron | 30.0% |
| ! | GAGCTTTTTGGATAATTACA+AGG | + | chr4.3:20925074-20925093 | MS.gene068020:intron | 30.0% |
| ! | TAAACCCAAATGCATTTTTC+AGG | + | chr4.3:20923746-20923765 | MS.gene068020:intron | 30.0% |
| ! | TGTAAACTAACCCATTTTAC+TGG | + | chr4.3:20925743-20925762 | MS.gene068020:CDS | 30.0% |
| ! | TGTATGCTTTTCTTATACCA+GGG | + | chr4.3:20925941-20925960 | MS.gene068020:intron | 30.0% |
| ! | TTCATTCAAAACGTTCTAAG+AGG | + | chr4.3:20924412-20924431 | MS.gene068020:CDS | 30.0% |
| ! | TTCCTTTTCTTAGGGAATTT+CGG | + | chr4.3:20923821-20923840 | MS.gene068020:intron | 30.0% |
| ! | TTTCTAAGAACACCAAAAGT+AGG | - | chr4.3:20925230-20925249 | None:intergenic | 30.0% |
| !! | AAGGACAGTTATTTTGTCAT+TGG | + | chr4.3:20925093-20925112 | MS.gene068020:intron | 30.0% |
| !! | ACAGTTATTTTGTCATTGGT+TGG | + | chr4.3:20925097-20925116 | MS.gene068020:intron | 30.0% |
| !! | ACTCAGCTGTTTCTAATTTA+CGG | + | chr4.3:20926436-20926455 | MS.gene068020:intron | 30.0% |
| !! | CTTCTTGATAATTTTGTGCA+AGG | + | chr4.3:20924348-20924367 | MS.gene068020:CDS | 30.0% |
| !! | TTTTGATGACTTATCAGTTC+TGG | + | chr4.3:20926692-20926711 | MS.gene068020:intron | 30.0% |
| !!! | ATGATTATTTTTAAGGCTGG+AGG | + | chr4.3:20923548-20923567 | MS.gene068020:intron | 30.0% |
| !!! | CTACATGGTGCTATTATTTT+AGG | + | chr4.3:20924967-20924986 | MS.gene068020:CDS | 30.0% |
| !!! | GATTGACCATATTGACTTTT+TGG | - | chr4.3:20924122-20924141 | None:intergenic | 30.0% |
| !!! | GTGTTCAGTTGCTTTTAAAA+TGG | + | chr4.3:20926095-20926114 | MS.gene068020:intron | 30.0% |
| !!! | TGATTATTTTTAAGGCTGGA+GGG | + | chr4.3:20923549-20923568 | MS.gene068020:intron | 30.0% |
| !!! | TGCTTTTAAAATGGAACTTG+TGG | + | chr4.3:20926104-20926123 | MS.gene068020:intron | 30.0% |
| !!! | TTGGCTTATTTTTTAGCTCA+TGG | + | chr4.3:20923282-20923301 | MS.gene068020:intron | 30.0% |
| !!! | TTTTAGAGTTCAGACTTCAA+AGG | - | chr4.3:20924146-20924165 | None:intergenic | 30.0% |
| AAATCTGCTCACAACTAATG+GGG | + | chr4.3:20924060-20924079 | MS.gene068020:CDS | 35.0% | |
| AAGTAGTGAAAGGATTACCT+TGG | - | chr4.3:20925835-20925854 | None:intergenic | 35.0% | |
| ACAAACCTGTTTATTGTTCC+AGG | + | chr4.3:20924908-20924927 | MS.gene068020:intron | 35.0% | |
| ACAAATACAGAACCCTTCTT+CGG | - | chr4.3:20926790-20926809 | None:intergenic | 35.0% | |
| AGAGACCTTGAACTTACTTA+TGG | - | chr4.3:20924494-20924513 | None:intergenic | 35.0% | |
| ATAAAGACATAAGCATCCGT+GGG | - | chr4.3:20925135-20925154 | None:intergenic | 35.0% | |
| ATTGCATGAACTTCTTCAGA+AGG | + | chr4.3:20924266-20924285 | MS.gene068020:CDS | 35.0% | |
| CAAAACTAAGCCAATCCAAA+CGG | + | chr4.3:20923449-20923468 | MS.gene068020:intron | 35.0% | |
| CACTTATTCAGTATGACACT+TGG | + | chr4.3:20923243-20923262 | MS.gene068020:intron | 35.0% | |
| CATTTACAGTCACAGAAAGT+TGG | - | chr4.3:20924039-20924058 | None:intergenic | 35.0% | |
| CTAGCAGACAATTATTTAGG+AGG | - | chr4.3:20925679-20925698 | None:intergenic | 35.0% | |
| CTAGCCTGAAAAATGCATTT+GGG | - | chr4.3:20923753-20923772 | None:intergenic | 35.0% | |
| GAAAATCTGCTCACAACTAA+TGG | + | chr4.3:20924058-20924077 | MS.gene068020:CDS | 35.0% | |
| GACAATTATTTAGGAGGTAG+AGG | - | chr4.3:20925673-20925692 | None:intergenic | 35.0% | |
| GAGTTCCATAAGTAAGTTCA+AGG | + | chr4.3:20924486-20924505 | MS.gene068020:intron | 35.0% | |
| GGGATATAGTAGTAATGACA+AGG | - | chr4.3:20924546-20924565 | None:intergenic | 35.0% | |
| TAAAATGGAACTTGTGGACA+TGG | + | chr4.3:20926110-20926129 | MS.gene068020:intron | 35.0% | |
| TAGTAAGATGAGCTTCTGAT+TGG | + | chr4.3:20925315-20925334 | MS.gene068020:intron | 35.0% | |
| TATACAATAACAGTACCCAG+TGG | - | chr4.3:20924806-20924825 | None:intergenic | 35.0% | |
| TCTAGCCTGAAAAATGCATT+TGG | - | chr4.3:20923754-20923773 | None:intergenic | 35.0% | |
| TTCTTCATCTTCTCAGACAA+GGG | + | chr4.3:20924380-20924399 | MS.gene068020:CDS | 35.0% | |
| TTGAGCCAATTGATTATTCC+TGG | - | chr4.3:20924929-20924948 | None:intergenic | 35.0% | |
| TTGCATGAACTTCTTCAGAA+GGG | + | chr4.3:20924267-20924286 | MS.gene068020:CDS | 35.0% | |
| TTTCTTCATCTTCTCAGACA+AGG | + | chr4.3:20924379-20924398 | MS.gene068020:CDS | 35.0% | |
| ! | AAACTGTGAAAGCCTACTTT+TGG | + | chr4.3:20925215-20925234 | MS.gene068020:intron | 35.0% |
| ! | AAGTTGTTGCTTAAATCCAC+TGG | + | chr4.3:20924787-20924806 | MS.gene068020:CDS | 35.0% |
| ! | AGTGTAAGGAGCATGAAAAA+AGG | - | chr4.3:20925421-20925440 | None:intergenic | 35.0% |
| ! | AGTTGTTGCTTAAATCCACT+GGG | + | chr4.3:20924788-20924807 | MS.gene068020:CDS | 35.0% |
| ! | ATGCTGAATTTTCAAAACGG+AGG | - | chr4.3:20926012-20926031 | None:intergenic | 35.0% |
| ! | GAACTATTTTACGCAGTCAT+TGG | + | chr4.3:20925261-20925280 | MS.gene068020:intron | 35.0% |
| ! | GATGTATTTTATGACAGGCA+TGG | + | chr4.3:20926193-20926212 | MS.gene068020:intron | 35.0% |
| ! | GGTTTAGCATTTTCTACTGT+AGG | - | chr4.3:20925040-20925059 | None:intergenic | 35.0% |
| ! | GTGTATGCTTTTCTTATACC+AGG | + | chr4.3:20925940-20925959 | MS.gene068020:intron | 35.0% |
| ! | TGGGATCTGTAACTTTTGAT+TGG | + | chr4.3:20923263-20923282 | MS.gene068020:intron | 35.0% |
| ! | TTAGGGAATTTCGGTCTTTT+TGG | + | chr4.3:20923830-20923849 | MS.gene068020:intron | 35.0% |
| ! | TTGACTCGAAAGTCGTTAAT+AGG | + | chr4.3:20926575-20926594 | MS.gene068020:intron | 35.0% |
| ! | TTTAAAGCCTGATGGAACAA+TGG | - | chr4.3:20923476-20923495 | None:intergenic | 35.0% |
| ! | TTTTCATGCTCCTTACACTT+GGG | + | chr4.3:20925422-20925441 | MS.gene068020:intron | 35.0% |
| ! | TTTTTCATGCTCCTTACACT+TGG | + | chr4.3:20925421-20925440 | MS.gene068020:intron | 35.0% |
| !! | AGCTGTTTCTACATTTCAAG+AGG | + | chr4.3:20923602-20923621 | MS.gene068020:intron | 35.0% |
| !! | GCTGTTTCTACATTTCAAGA+GGG | + | chr4.3:20923603-20923622 | MS.gene068020:intron | 35.0% |
| !! | TTGTACTACAAGTTGATTGC+TGG | + | chr4.3:20926806-20926825 | MS.gene068020:CDS | 35.0% |
| !!! | TTCACAGTTTTGAGTACATG+CGG | - | chr4.3:20925205-20925224 | None:intergenic | 35.0% |
| AAACACAGGAATAACAGCTC+TGG | - | chr4.3:20925882-20925901 | None:intergenic | 40.0% | |
| AATTGCAGTTGTTCCGAAGA+AGG | + | chr4.3:20926774-20926793 | MS.gene068020:intron | 40.0% | |
| ACACAGAATTGTGATGCTCA+AGG | - | chr4.3:20926652-20926671 | None:intergenic | 40.0% | |
| ACAGAAAGTTGGGCATATTC+TGG | - | chr4.3:20924028-20924047 | None:intergenic | 40.0% | |
| ATTGCAGTTGTTCCGAAGAA+GGG | + | chr4.3:20926775-20926794 | MS.gene068020:intron | 40.0% | |
| CAAATTTGTACAGCAAACCC+TGG | - | chr4.3:20925961-20925980 | None:intergenic | 40.0% | |
| CACTATTAGATTGTCCTGTC+AGG | + | chr4.3:20926305-20926324 | MS.gene068020:intron | 40.0% | |
| CAGTACAGTACCTTGTGAAA+TGG | - | chr4.3:20923861-20923880 | None:intergenic | 40.0% | |
| CATAAAGACATAAGCATCCG+TGG | - | chr4.3:20925136-20925155 | None:intergenic | 40.0% | |
| GACCGAAATTCCCTAAGAAA+AGG | - | chr4.3:20923826-20923845 | None:intergenic | 40.0% | |
| GACGGATCATTAGAAGTAGA+GGG | - | chr4.3:20923140-20923159 | None:intergenic | 40.0% | |
| GATCACCTAATCAGCAATCA+CGG | + | chr4.3:20924702-20924721 | MS.gene068020:intron | 40.0% | |
| TACTATATCCCTGCAGTTTG+TGG | + | chr4.3:20924555-20924574 | MS.gene068020:intron | 40.0% | |
| TAGTTTATCTCCAAGCAGAG+TGG | - | chr4.3:20926836-20926855 | None:intergenic | 40.0% | |
| TCAAGAGGGAATAAGCAATG+TGG | + | chr4.3:20923617-20923636 | MS.gene068020:intron | 40.0% | |
| TCTTTCCACATGTCATGCAT+TGG | - | chr4.3:20924760-20924779 | None:intergenic | 40.0% | |
| TGAATCAAGGAAACGTGCAA+TGG | + | chr4.3:20922974-20922993 | MS.gene068020:CDS | 40.0% | |
| TGAGTCATCTAGACAGAGTT+TGG | - | chr4.3:20925576-20925595 | None:intergenic | 40.0% | |
| ! | ATGAACCGTGATTGCTGATT+AGG | - | chr4.3:20924710-20924729 | None:intergenic | 40.0% |
| ! | CTAACCCATTTTACTGGAAC+TGG | + | chr4.3:20925749-20925768 | MS.gene068020:CDS | 40.0% |
| ! | CTGCTTGTTACTCAAGAAAG+CGG | - | chr4.3:20926238-20926257 | None:intergenic | 40.0% |
| ! | GTGAAACTGCAGAAGCTTTT+GGG | + | chr4.3:20925786-20925805 | MS.gene068020:CDS | 40.0% |
| !! | CAGTTTTCTTCTGAAAGAGG+AGG | + | chr4.3:20924228-20924247 | MS.gene068020:intron | 40.0% |
| !! | CTGCAGTTTTCTTCTGAAAG+AGG | + | chr4.3:20924225-20924244 | MS.gene068020:intron | 40.0% |
| AAAAAGGTTATGCGTGCCAC+TGG | - | chr4.3:20925405-20925424 | None:intergenic | 45.0% | |
| AAACGGACCATTGTTCCATC+AGG | + | chr4.3:20923466-20923485 | MS.gene068020:intron | 45.0% | |
| ACACTCCACAACTGCATAAC+AGG | - | chr4.3:20925726-20925745 | None:intergenic | 45.0% | |
| AGAGGGAATAAGCAATGTGG+AGG | + | chr4.3:20923620-20923639 | MS.gene068020:intron | 45.0% | |
| ATACCTAGGTCTTCTTCTCC+GGG | + | chr4.3:20925346-20925365 | MS.gene068020:intron | 45.0% | |
| ATCAAGGAAACGTGCAATGG+AGG | + | chr4.3:20922977-20922996 | MS.gene068020:CDS | 45.0% | |
| ATCCACCTGTTATGCAGTTG+TGG | + | chr4.3:20925718-20925737 | MS.gene068020:intron | 45.0% | |
| CATACCTAGGTCTTCTTCTC+CGG | + | chr4.3:20925345-20925364 | MS.gene068020:intron | 45.0% | |
| GAAAGAGGAGGTTCAGTTTC+CGG | + | chr4.3:20924240-20924259 | MS.gene068020:CDS | 45.0% | |
| GAACAATGGTCCGTTTGGAT+TGG | - | chr4.3:20923462-20923481 | None:intergenic | 45.0% | |
| GCCACCAGTTCCAGTAAAAT+GGG | - | chr4.3:20925756-20925775 | None:intergenic | 45.0% | |
| GCCTTTATGTCGTCCATCAT+CGG | + | chr4.3:20923163-20923182 | MS.gene068020:CDS | 45.0% | |
| GGACGGATCATTAGAAGTAG+AGG | - | chr4.3:20923141-20923160 | None:intergenic | 45.0% | |
| GGATCATTAGAAGTAGAGGG+TGG | - | chr4.3:20923137-20923156 | None:intergenic | 45.0% | |
| TCAAGCCAATGCATGACATG+TGG | + | chr4.3:20924752-20924771 | MS.gene068020:CDS | 45.0% | |
| TCATCGGATACACCCAACAA+AGG | + | chr4.3:20923179-20923198 | MS.gene068020:CDS | 45.0% | |
| TCATTAGAAGTAGAGGGTGG+TGG | - | chr4.3:20923134-20923153 | None:intergenic | 45.0% | |
| TGATGGAACAATGGTCCGTT+TGG | - | chr4.3:20923467-20923486 | None:intergenic | 45.0% | |
| TGCCACCAGTTCCAGTAAAA+TGG | - | chr4.3:20925757-20925776 | None:intergenic | 45.0% | |
| TTGTTGGGTGTATCCGATGA+TGG | - | chr4.3:20923179-20923198 | None:intergenic | 45.0% | |
| ! | AAAAGGTTATGCGTGCCACT+GGG | - | chr4.3:20925404-20925423 | None:intergenic | 45.0% |
| ! | ACCCATTTTACTGGAACTGG+TGG | + | chr4.3:20925752-20925771 | MS.gene068020:CDS | 45.0% |
| ! | CAATTGGCTCAATGTCTCCT+AGG | + | chr4.3:20924937-20924956 | MS.gene068020:CDS | 45.0% |
| ! | CGTGAAACTGCAGAAGCTTT+TGG | + | chr4.3:20925785-20925804 | MS.gene068020:CDS | 45.0% |
| ! | GATGAGCTTCTGATTGGTTG+AGG | + | chr4.3:20925321-20925340 | MS.gene068020:intron | 45.0% |
| ! | GATTGGTTGAGGTCATACCT+AGG | + | chr4.3:20925332-20925351 | MS.gene068020:intron | 45.0% |
| ! | GCAGCACAAAAGTACATGCA+AGG | + | chr4.3:20924294-20924313 | MS.gene068020:CDS | 45.0% |
| ! | TGATGGACGACATAAAGGCA+AGG | - | chr4.3:20923162-20923181 | None:intergenic | 45.0% |
| !! | TCCGATGATGGACGACATAA+AGG | - | chr4.3:20923167-20923186 | None:intergenic | 45.0% |
| !! | TTTGGTCGTGCCATTTCACA+AGG | + | chr4.3:20923848-20923867 | MS.gene068020:CDS | 45.0% |
| ATTCCCGGAGAAGAAGACCT+AGG | - | chr4.3:20925352-20925371 | None:intergenic | 50.0% | |
| CACCATGTAGATCTGCACCT+AGG | - | chr4.3:20924957-20924976 | None:intergenic | 50.0% | |
| CTCCACAACTGCATAACAGG+TGG | - | chr4.3:20925723-20925742 | None:intergenic | 50.0% | |
| CTCCTAGGTGCAGATCTACA+TGG | + | chr4.3:20924952-20924971 | MS.gene068020:CDS | 50.0% | |
| GAAACGTGCAATGGAGGCTT+TGG | + | chr4.3:20922983-20923002 | MS.gene068020:CDS | 50.0% | |
| GGACGACATAAAGGCAAGGA+CGG | - | chr4.3:20923158-20923177 | None:intergenic | 50.0% | |
| TCTCACTGCCACAAACTGCA+GGG | - | chr4.3:20924566-20924585 | None:intergenic | 50.0% | |
| TCTGCTCACAACTAATGGGG+AGG | + | chr4.3:20924063-20924082 | MS.gene068020:CDS | 50.0% | |
| TTCTCACTGCCACAAACTGC+AGG | - | chr4.3:20924567-20924586 | None:intergenic | 50.0% | |
| ! | CGTGCCACTGGGAATGAAAA+GGG | - | chr4.3:20925393-20925412 | None:intergenic | 50.0% |
| ! | TCCTCCCTTTTCATTCCCAG+TGG | + | chr4.3:20925386-20925405 | MS.gene068020:intron | 50.0% |
| GCCACTGGGAATGAAAAGGG+AGG | - | chr4.3:20925390-20925409 | None:intergenic | 55.0% | |
| TGCTGGAAAGCCACTCTGCT+TGG | + | chr4.3:20926823-20926842 | MS.gene068020:CDS | 55.0% | |
| ! | GCGTGCCACTGGGAATGAAA+AGG | - | chr4.3:20925394-20925413 | None:intergenic | 55.0% |
| !! | GAAGTAGAGGGTGGTGGAGT+AGG | - | chr4.3:20923128-20923147 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 20922966 | 20926879 | 20922966 | ID=MS.gene068020 |
| chr4.3 | mRNA | 20922966 | 20926879 | 20922966 | ID=MS.gene068020.t1;Parent=MS.gene068020 |
| chr4.3 | exon | 20922966 | 20923200 | 20922966 | ID=MS.gene068020.t1.exon1;Parent=MS.gene068020.t1 |
| chr4.3 | CDS | 20922966 | 20923200 | 20922966 | ID=cds.MS.gene068020.t1;Parent=MS.gene068020.t1 |
| chr4.3 | exon | 20923834 | 20923869 | 20923834 | ID=MS.gene068020.t1.exon2;Parent=MS.gene068020.t1 |
| chr4.3 | CDS | 20923834 | 20923869 | 20923834 | ID=cds.MS.gene068020.t1;Parent=MS.gene068020.t1 |
| chr4.3 | exon | 20924011 | 20924084 | 20924011 | ID=MS.gene068020.t1.exon3;Parent=MS.gene068020.t1 |
| chr4.3 | CDS | 20924011 | 20924084 | 20924011 | ID=cds.MS.gene068020.t1;Parent=MS.gene068020.t1 |
| chr4.3 | exon | 20924231 | 20924496 | 20924231 | ID=MS.gene068020.t1.exon4;Parent=MS.gene068020.t1 |
| chr4.3 | CDS | 20924231 | 20924496 | 20924231 | ID=cds.MS.gene068020.t1;Parent=MS.gene068020.t1 |
| chr4.3 | exon | 20924741 | 20924809 | 20924741 | ID=MS.gene068020.t1.exon5;Parent=MS.gene068020.t1 |
| chr4.3 | CDS | 20924741 | 20924809 | 20924741 | ID=cds.MS.gene068020.t1;Parent=MS.gene068020.t1 |
| chr4.3 | exon | 20924930 | 20924988 | 20924930 | ID=MS.gene068020.t1.exon6;Parent=MS.gene068020.t1 |
| chr4.3 | CDS | 20924930 | 20924988 | 20924930 | ID=cds.MS.gene068020.t1;Parent=MS.gene068020.t1 |
| chr4.3 | exon | 20925735 | 20925836 | 20925735 | ID=MS.gene068020.t1.exon7;Parent=MS.gene068020.t1 |
| chr4.3 | CDS | 20925735 | 20925836 | 20925735 | ID=cds.MS.gene068020.t1;Parent=MS.gene068020.t1 |
| chr4.3 | exon | 20926782 | 20926879 | 20926782 | ID=MS.gene068020.t1.exon8;Parent=MS.gene068020.t1 |
| chr4.3 | CDS | 20926782 | 20926879 | 20926782 | ID=cds.MS.gene068020.t1;Parent=MS.gene068020.t1 |
| Gene Sequence |
| Protein sequence |
