Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06812.t1 | XP_003602392.1 | 99.1 | 342 | 3 | 0 | 1 | 342 | 1 | 342 | 9.40E-196 | 692.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06812.t1 | Q9XGN1 | 78.2 | 344 | 70 | 3 | 1 | 342 | 1 | 341 | 6.9e-155 | 548.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06812.t1 | B4XH97 | 99.1 | 342 | 3 | 0 | 1 | 342 | 1 | 342 | 6.7e-196 | 692.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52286 | MS.gene06812 | PPI |
| MS.gene06812 | MS.gene72217 | PPI |
| MS.gene51926 | MS.gene06812 | PPI |
| MS.gene024336 | MS.gene06812 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06812.t1 | MTR_3g092840 | 99.123 | 342 | 3 | 0 | 1 | 342 | 1 | 342 | 0.0 | 703 |
| MS.gene06812.t1 | MTR_7g084810 | 58.857 | 350 | 127 | 5 | 3 | 342 | 10 | 352 | 9.50e-148 | 421 |
| MS.gene06812.t1 | MTR_3g092830 | 84.783 | 92 | 14 | 0 | 251 | 342 | 1 | 92 | 3.11e-52 | 168 |
| MS.gene06812.t1 | MTR_2g016160 | 27.568 | 185 | 127 | 4 | 138 | 319 | 112 | 292 | 2.42e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06812.t1 | AT5G24520 | 78.551 | 345 | 67 | 4 | 1 | 342 | 1 | 341 | 0.0 | 555 |
| MS.gene06812.t1 | AT5G24520 | 78.551 | 345 | 67 | 4 | 1 | 342 | 1 | 341 | 0.0 | 555 |
| MS.gene06812.t1 | AT5G24520 | 78.551 | 345 | 67 | 4 | 1 | 342 | 1 | 341 | 0.0 | 555 |
| MS.gene06812.t1 | AT5G24520 | 78.551 | 345 | 67 | 4 | 1 | 342 | 1 | 341 | 0.0 | 555 |
| MS.gene06812.t1 | AT1G12910 | 60.790 | 329 | 120 | 4 | 18 | 342 | 23 | 346 | 5.61e-146 | 416 |
| MS.gene06812.t1 | AT3G26640 | 58.092 | 346 | 134 | 5 | 1 | 342 | 8 | 346 | 2.97e-144 | 411 |
| MS.gene06812.t1 | AT1G29260 | 29.167 | 192 | 129 | 4 | 131 | 319 | 104 | 291 | 2.88e-13 | 70.1 |
Find 108 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCAATAAAGTTGTCATTT+TGG | 0.187773 | 3.1:-74828552 | MS.gene06812:CDS |
| CAAATATGCTTCGAACTTCT+TGG | 0.223079 | 3.1:+74828455 | None:intergenic |
| ATGATGCACAGGCTCTTATT+TGG | 0.239316 | 3.1:-74828421 | MS.gene06812:CDS |
| TTCCAATCAAAGGATGTTAA+AGG | 0.269478 | 3.1:+74828875 | None:intergenic |
| TTGACACTACTTGTACTATC+TGG | 0.291467 | 3.1:-74828817 | MS.gene06812:CDS |
| CTCCTTTAACATCCTTTGAT+TGG | 0.296600 | 3.1:-74828877 | MS.gene06812:CDS |
| AACTACACCGGTGGCAGAAT+TGG | 0.323851 | 3.1:-74828516 | MS.gene06812:CDS |
| GGCTCTTATTTGGGAGTTGC+CGG | 0.327141 | 3.1:-74828411 | MS.gene06812:CDS |
| ACTTGAAGTTCCAATTCGTT+TGG | 0.338704 | 3.1:+74828841 | None:intergenic |
| CAAGAAGGATTTGAGGTATA+TGG | 0.338971 | 3.1:-74828591 | MS.gene06812:CDS |
| AGTTCGAAGCATATTTGTTC+TGG | 0.340652 | 3.1:-74828449 | MS.gene06812:CDS |
| GGTCTGCTGTTCAGCCTGAT+TGG | 0.353319 | 3.1:-74828316 | MS.gene06812:CDS |
| AGATACCCCTTTGCTTCGTT+TGG | 0.354407 | 3.1:-74828621 | MS.gene06812:CDS |
| CCGGTGACTATCTCCGTCTC+TGG | 0.354504 | 3.1:-74828967 | MS.gene06812:CDS |
| TTTGCTTCGGTTTCTGCTGA+TGG | 0.360345 | 3.1:-74828710 | MS.gene06812:CDS |
| CCCCTTTGCTTCGTTTGGCT+TGG | 0.361608 | 3.1:-74828616 | MS.gene06812:CDS |
| GGTTTGAGTGAGAGTGTGTC+AGG | 0.364304 | 3.1:+74829097 | None:intergenic |
| TGATGCACAGGCTCTTATTT+GGG | 0.374972 | 3.1:-74828420 | MS.gene06812:CDS |
| TTTCTGCTGATGGGTCTGTT+AGG | 0.375024 | 3.1:-74828700 | MS.gene06812:CDS |
| GAAATTGAGCCCAAACGAAT+TGG | 0.382415 | 3.1:-74828851 | MS.gene06812:CDS |
| CTGGTGTCAATGCGATTGCT+TGG | 0.387077 | 3.1:-74828481 | MS.gene06812:CDS |
| CTTGAAGTTCCAATTCGTTT+GGG | 0.388164 | 3.1:+74828842 | None:intergenic |
| ATGAGTTTGGTGGGTGGGTA+AGG | 0.390168 | 3.1:+74829049 | None:intergenic |
| AAACGAAGCAAAGGGGTATC+TGG | 0.392354 | 3.1:+74828623 | None:intergenic |
| AGAGGTTTATGATATTGCTT+GGG | 0.401590 | 3.1:-74828747 | MS.gene06812:CDS |
| GTATGTTACGGAATTGTTAT+CGG | 0.407724 | 3.1:+74829243 | None:intergenic |
| GACATGGCGTAGAGTGGGTA+TGG | 0.409381 | 3.1:+74829214 | None:intergenic |
| AAGAGGTTTATGATATTGCT+TGG | 0.412325 | 3.1:-74828748 | MS.gene06812:CDS |
| TGTTGTGGGGAATTGGTGTT+GGG | 0.413984 | 3.1:+74829184 | None:intergenic |
| TTGTTGTGGGGAATTGGTGT+TGG | 0.414411 | 3.1:+74829183 | None:intergenic |
| GGAATTGGTGTTGGGAGAGA+TGG | 0.421413 | 3.1:+74829192 | None:intergenic |
| GATGCGTTGTTGTGGGGAAT+TGG | 0.430152 | 3.1:+74829177 | None:intergenic |
| TGGGAGTTGCCGGCTGTGGC+TGG | 0.434983 | 3.1:-74828401 | MS.gene06812:CDS |
| AATTGTTATCGGATCGGAGA+TGG | 0.436965 | 3.1:+74829254 | None:intergenic |
| GTGTGTCAGGGTTGAAATTG+AGG | 0.439145 | 3.1:+74829110 | None:intergenic |
| CCAGTAGAATACATAGTCAT+TGG | 0.441191 | 3.1:+74828362 | None:intergenic |
| CCGGCTGTGGCTGGTCCGAA+TGG | 0.451106 | 3.1:-74828392 | MS.gene06812:CDS |
| CTCAATTTCATTCCAATCAA+AGG | 0.452776 | 3.1:+74828865 | None:intergenic |
| TTCTGGTGGGGATGATGCAC+AGG | 0.454070 | 3.1:-74828432 | MS.gene06812:CDS |
| GGCGGGATGGAACATGAGTT+TGG | 0.463020 | 3.1:+74829036 | None:intergenic |
| TTGCTTCGGTTTCTGCTGAT+GGG | 0.464907 | 3.1:-74828709 | MS.gene06812:CDS |
| TGGTGTCAATGCGATTGCTT+GGG | 0.476618 | 3.1:-74828480 | MS.gene06812:CDS |
| GTTAATTGCGCATGATAAAG+AGG | 0.479182 | 3.1:-74828765 | MS.gene06812:CDS |
| GGAACATGAGTTTGGTGGGT+GGG | 0.485922 | 3.1:+74829044 | None:intergenic |
| CGGCTGTGGCTGGTCCGAAT+GGG | 0.487137 | 3.1:-74828391 | MS.gene06812:CDS |
| GGTAGCGAGGAGGTCGGAGG+AGG | 0.491352 | 3.1:+74828991 | None:intergenic |
| CTTGGAACAAGAAGGATTTG+AGG | 0.491459 | 3.1:-74828598 | MS.gene06812:CDS |
| ATTGTTATCGGATCGGAGAT+GGG | 0.492068 | 3.1:+74829255 | None:intergenic |
| TCCGACCTCCTCGCTACCTC+CGG | 0.494753 | 3.1:-74828986 | MS.gene06812:CDS |
| TATTTGGGAGTTGCCGGCTG+TGG | 0.495883 | 3.1:-74828405 | MS.gene06812:CDS |
| AAAGCAATAGCAATCCAATC+AGG | 0.495960 | 3.1:+74828302 | None:intergenic |
| GTCATTGGATCAATCCCATT+CGG | 0.499402 | 3.1:+74828377 | None:intergenic |
| CCAACGGCGATGCGTTGTTG+TGG | 0.506615 | 3.1:+74829169 | None:intergenic |
| AGCAAAGGGGTATCTGGTTG+TGG | 0.507780 | 3.1:+74828629 | None:intergenic |
| CAACGGCGATGCGTTGTTGT+GGG | 0.514389 | 3.1:+74829170 | None:intergenic |
| TGACACTACTTGTACTATCT+GGG | 0.515740 | 3.1:-74828816 | MS.gene06812:CDS |
| AATTCTGCCACCGGTGTAGT+TGG | 0.520169 | 3.1:+74828518 | None:intergenic |
| TCGAAGGAGAGTGAAGGTTG+AGG | 0.520984 | 3.1:+74829076 | None:intergenic |
| GAAGCATATTTGTTCTGGTG+GGG | 0.522421 | 3.1:-74828444 | MS.gene06812:CDS |
| TCCAAGCCAAACGAAGCAAA+GGG | 0.522555 | 3.1:+74828615 | None:intergenic |
| TCGAAGCATATTTGTTCTGG+TGG | 0.528006 | 3.1:-74828446 | MS.gene06812:CDS |
| TCGTTTGGCTTGGAACAAGA+AGG | 0.528809 | 3.1:-74828606 | MS.gene06812:CDS |
| CGAAGCATATTTGTTCTGGT+GGG | 0.533772 | 3.1:-74828445 | MS.gene06812:CDS |
| CCATTCGGACCAGCCACAGC+CGG | 0.534014 | 3.1:+74828392 | None:intergenic |
| CGGTGACTATCTCCGTCTCT+GGG | 0.535569 | 3.1:-74828966 | MS.gene06812:CDS |
| GGTTTATGATATTGCTTGGG+GGG | 0.537143 | 3.1:-74828744 | MS.gene06812:CDS |
| ACATGGCGTAGAGTGGGTAT+GGG | 0.541875 | 3.1:+74829215 | None:intergenic |
| TTCCAAGCCAAACGAAGCAA+AGG | 0.542040 | 3.1:+74828614 | None:intergenic |
| CCAATGACTATGTATTCTAC+TGG | 0.544008 | 3.1:-74828362 | MS.gene06812:CDS |
| GAAAAGAGAAAGAGCTTCAA+CGG | 0.553285 | 3.1:+74828928 | None:intergenic |
| GTATGGGGAATCGTATGTTA+CGG | 0.560573 | 3.1:+74829231 | None:intergenic |
| TGTCTCTCCAATTCTGCCAC+CGG | 0.562005 | 3.1:+74828509 | None:intergenic |
| GGAGGTAGCGAGGAGGTCGG+AGG | 0.571097 | 3.1:+74828988 | None:intergenic |
| CATGGCGTAGAGTGGGTATG+GGG | 0.571219 | 3.1:+74829216 | None:intergenic |
| TAAAGGAGCACAAAACTCAC+TGG | 0.571374 | 3.1:+74828892 | None:intergenic |
| GAGAAGAATGTGTGGCGGGA+TGG | 0.574788 | 3.1:+74829023 | None:intergenic |
| GTGAAATTAATCAGCTTCAG+TGG | 0.574954 | 3.1:-74828337 | MS.gene06812:CDS |
| CCACAACAACGCATCGCCGT+TGG | 0.579052 | 3.1:-74829169 | MS.gene06812:CDS |
| CCAGAGACGGAGATAGTCAC+CGG | 0.580223 | 3.1:+74828967 | None:intergenic |
| GTTTGAGTGAGAGTGTGTCA+GGG | 0.584476 | 3.1:+74829098 | None:intergenic |
| TGGAACATGAGTTTGGTGGG+TGG | 0.586765 | 3.1:+74829043 | None:intergenic |
| GATAGTCACCGGAGGTAGCG+AGG | 0.590791 | 3.1:+74828978 | None:intergenic |
| AGATGGACATGGCGTAGAGT+GGG | 0.592865 | 3.1:+74829209 | None:intergenic |
| TTACGGAATTGTTATCGGAT+CGG | 0.595688 | 3.1:+74829248 | None:intergenic |
| GAGATGGACATGGCGTAGAG+TGG | 0.596359 | 3.1:+74829208 | None:intergenic |
| GGATGATCGAAGGAGAGTGA+AGG | 0.596401 | 3.1:+74829070 | None:intergenic |
| ACTATCTGGGACATTGAAAG+AGG | 0.599329 | 3.1:-74828803 | MS.gene06812:CDS |
| AACGGCGATGCGTTGTTGTG+GGG | 0.605737 | 3.1:+74829171 | None:intergenic |
| GGGATGGAACATGAGTTTGG+TGG | 0.607789 | 3.1:+74829039 | None:intergenic |
| GGATGGAACATGAGTTTGGT+GGG | 0.609593 | 3.1:+74829040 | None:intergenic |
| TGGAGAGAAGAATGTGTGGC+GGG | 0.613114 | 3.1:+74829019 | None:intergenic |
| TTTCGCGAACTTCCCAGAGA+CGG | 0.616480 | 3.1:+74828954 | None:intergenic |
| GAGGTTTATGATATTGCTTG+GGG | 0.618826 | 3.1:-74828746 | MS.gene06812:CDS |
| TATTAGATCACCAACTACAC+CGG | 0.632803 | 3.1:-74828528 | MS.gene06812:CDS |
| CTGGAGAGAAGAATGTGTGG+CGG | 0.637151 | 3.1:+74829018 | None:intergenic |
| TCGGAGATGGGATTCTTGTG+TGG | 0.641501 | 3.1:+74829267 | None:intergenic |
| GAATTGGAGAGACATCGTGC+TGG | 0.651945 | 3.1:-74828500 | MS.gene06812:CDS |
| GGGTGGGTAAGGATGATCGA+AGG | 0.652213 | 3.1:+74829060 | None:intergenic |
| ACCGGAGGTAGCGAGGAGGT+CGG | 0.660144 | 3.1:+74828985 | None:intergenic |
| TTCTTCGATGAAGCTACCAA+CGG | 0.661547 | 3.1:+74829153 | None:intergenic |
| TGAAATTGAGGATATCGATG+CGG | 0.685931 | 3.1:+74829122 | None:intergenic |
| TAGATCACCAACTACACCGG+TGG | 0.693951 | 3.1:-74828525 | MS.gene06812:CDS |
| TTTCTGGAGAGAAGAATGTG+TGG | 0.702519 | 3.1:+74829015 | None:intergenic |
| CCAAGCCAAACGAAGCAAAG+GGG | 0.704032 | 3.1:+74828616 | None:intergenic |
| GAGACGGAGATAGTCACCGG+AGG | 0.711536 | 3.1:+74828970 | None:intergenic |
| AGGTTTATGATATTGCTTGG+GGG | 0.720364 | 3.1:-74828745 | MS.gene06812:CDS |
| AGTCACCGGAGGTAGCGAGG+AGG | 0.732592 | 3.1:+74828981 | None:intergenic |
| GGTGTTGGGAGAGATGGACA+TGG | 0.772892 | 3.1:+74829198 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTAGGATTTTTGATTTAA+GGG | - | chr3.1:74828864-74828883 | MS.gene06812:CDS | 20.0% |
| !! | TAATAAAATGCAGCTTTTGA+GGG | - | chr3.1:74829272-74829291 | MS.gene06812:CDS | 25.0% |
| !!! | CTGTTAGGATTTTTGATTTA+AGG | - | chr3.1:74828863-74828882 | MS.gene06812:CDS | 25.0% |
| !!! | TAGCAATAAAGTTGTCATTT+TGG | - | chr3.1:74828996-74829015 | MS.gene06812:CDS | 25.0% |
| AAGAGGTTTATGATATTGCT+TGG | - | chr3.1:74828800-74828819 | MS.gene06812:CDS | 30.0% | |
| AGAGGTTTATGATATTGCTT+GGG | - | chr3.1:74828801-74828820 | MS.gene06812:CDS | 30.0% | |
| CTCAATTTCATTCCAATCAA+AGG | + | chr3.1:74828686-74828705 | None:intergenic | 30.0% | |
| GTATGTTACGGAATTGTTAT+CGG | + | chr3.1:74828308-74828327 | None:intergenic | 30.0% | |
| TTCCAATCAAAGGATGTTAA+AGG | + | chr3.1:74828676-74828695 | None:intergenic | 30.0% | |
| ! | CTAATAAAATGCAGCTTTTG+AGG | - | chr3.1:74829271-74829290 | MS.gene06812:CDS | 30.0% |
| AAAGCAATAGCAATCCAATC+AGG | + | chr3.1:74829249-74829268 | None:intergenic | 35.0% | |
| ACTTGAAGTTCCAATTCGTT+TGG | + | chr3.1:74828710-74828729 | None:intergenic | 35.0% | |
| AGGTTTATGATATTGCTTGG+GGG | - | chr3.1:74828803-74828822 | MS.gene06812:CDS | 35.0% | |
| AGTTCGAAGCATATTTGTTC+TGG | - | chr3.1:74829099-74829118 | MS.gene06812:CDS | 35.0% | |
| CAAATATGCTTCGAACTTCT+TGG | + | chr3.1:74829096-74829115 | None:intergenic | 35.0% | |
| CCAATGACTATGTATTCTAC+TGG | - | chr3.1:74829186-74829205 | MS.gene06812:CDS | 35.0% | |
| CCAGTAGAATACATAGTCAT+TGG | + | chr3.1:74829189-74829208 | None:intergenic | 35.0% | |
| CTCCTTTAACATCCTTTGAT+TGG | - | chr3.1:74828671-74828690 | MS.gene06812:CDS | 35.0% | |
| CTTGAAGTTCCAATTCGTTT+GGG | + | chr3.1:74828709-74828728 | None:intergenic | 35.0% | |
| GAAAAGAGAAAGAGCTTCAA+CGG | + | chr3.1:74828623-74828642 | None:intergenic | 35.0% | |
| GAGGTTTATGATATTGCTTG+GGG | - | chr3.1:74828802-74828821 | MS.gene06812:CDS | 35.0% | |
| GTGAAATTAATCAGCTTCAG+TGG | - | chr3.1:74829211-74829230 | MS.gene06812:CDS | 35.0% | |
| GTTAATTGCGCATGATAAAG+AGG | - | chr3.1:74828783-74828802 | MS.gene06812:CDS | 35.0% | |
| TATTAGATCACCAACTACAC+CGG | - | chr3.1:74829020-74829039 | MS.gene06812:CDS | 35.0% | |
| TGAAATTGAGGATATCGATG+CGG | + | chr3.1:74828429-74828448 | None:intergenic | 35.0% | |
| TGACACTACTTGTACTATCT+GGG | - | chr3.1:74828732-74828751 | MS.gene06812:CDS | 35.0% | |
| TTACGGAATTGTTATCGGAT+CGG | + | chr3.1:74828303-74828322 | None:intergenic | 35.0% | |
| TTGACACTACTTGTACTATC+TGG | - | chr3.1:74828731-74828750 | MS.gene06812:CDS | 35.0% | |
| ! | CAAGAAGGATTTGAGGTATA+TGG | - | chr3.1:74828957-74828976 | MS.gene06812:CDS | 35.0% |
| ! | GTATATGGCTACGATTTTGA+TGG | - | chr3.1:74828972-74828991 | MS.gene06812:CDS | 35.0% |
| AATTGTTATCGGATCGGAGA+TGG | + | chr3.1:74828297-74828316 | None:intergenic | 40.0% | |
| ATGATGCACAGGCTCTTATT+TGG | - | chr3.1:74829127-74829146 | MS.gene06812:CDS | 40.0% | |
| ATTGTTATCGGATCGGAGAT+GGG | + | chr3.1:74828296-74828315 | None:intergenic | 40.0% | |
| CGAAGCATATTTGTTCTGGT+GGG | - | chr3.1:74829103-74829122 | MS.gene06812:CDS | 40.0% | |
| CTTGGAACAAGAAGGATTTG+AGG | - | chr3.1:74828950-74828969 | MS.gene06812:CDS | 40.0% | |
| GAAATTGAGCCCAAACGAAT+TGG | - | chr3.1:74828697-74828716 | MS.gene06812:CDS | 40.0% | |
| GAAGCATATTTGTTCTGGTG+GGG | - | chr3.1:74829104-74829123 | MS.gene06812:CDS | 40.0% | |
| GGTTTATGATATTGCTTGGG+GGG | - | chr3.1:74828804-74828823 | MS.gene06812:CDS | 40.0% | |
| GTATGGGGAATCGTATGTTA+CGG | + | chr3.1:74828320-74828339 | None:intergenic | 40.0% | |
| GTCATTGGATCAATCCCATT+CGG | + | chr3.1:74829174-74829193 | None:intergenic | 40.0% | |
| TCGAAGCATATTTGTTCTGG+TGG | - | chr3.1:74829102-74829121 | MS.gene06812:CDS | 40.0% | |
| TTCTTCGATGAAGCTACCAA+CGG | + | chr3.1:74828398-74828417 | None:intergenic | 40.0% | |
| ! | ACTATCTGGGACATTGAAAG+AGG | - | chr3.1:74828745-74828764 | MS.gene06812:CDS | 40.0% |
| ! | GGAATCAAGGGTTTTTGCTT+CGG | - | chr3.1:74828825-74828844 | MS.gene06812:CDS | 40.0% |
| ! | TAAAGGAGCACAAAACTCAC+TGG | + | chr3.1:74828659-74828678 | None:intergenic | 40.0% |
| ! | TGATGCACAGGCTCTTATTT+GGG | - | chr3.1:74829128-74829147 | MS.gene06812:CDS | 40.0% |
| ! | TTTCTGGAGAGAAGAATGTG+TGG | + | chr3.1:74828536-74828555 | None:intergenic | 40.0% |
| AGATACCCCTTTGCTTCGTT+TGG | - | chr3.1:74828927-74828946 | MS.gene06812:CDS | 45.0% | |
| ATATTGCTTGGGGGGAATCA+AGG | - | chr3.1:74828812-74828831 | MS.gene06812:CDS | 45.0% | |
| GGATGGAACATGAGTTTGGT+GGG | + | chr3.1:74828511-74828530 | None:intergenic | 45.0% | |
| GTGTGTCAGGGTTGAAATTG+AGG | + | chr3.1:74828441-74828460 | None:intergenic | 45.0% | |
| TATTGCTTGGGGGGAATCAA+GGG | - | chr3.1:74828813-74828832 | MS.gene06812:CDS | 45.0% | |
| TCCAAGCCAAACGAAGCAAA+GGG | + | chr3.1:74828936-74828955 | None:intergenic | 45.0% | |
| TTCCAAGCCAAACGAAGCAA+AGG | + | chr3.1:74828937-74828956 | None:intergenic | 45.0% | |
| TTGCTTCGGTTTCTGCTGAT+GGG | - | chr3.1:74828839-74828858 | MS.gene06812:CDS | 45.0% | |
| TTGTTGTGGGGAATTGGTGT+TGG | + | chr3.1:74828368-74828387 | None:intergenic | 45.0% | |
| TTTGCTTCGGTTTCTGCTGA+TGG | - | chr3.1:74828838-74828857 | MS.gene06812:CDS | 45.0% | |
| ! | GTTTGAGTGAGAGTGTGTCA+GGG | + | chr3.1:74828453-74828472 | None:intergenic | 45.0% |
| ! | TGGTGTCAATGCGATTGCTT+GGG | - | chr3.1:74829068-74829087 | MS.gene06812:CDS | 45.0% |
| ! | TGTTGTGGGGAATTGGTGTT+GGG | + | chr3.1:74828367-74828386 | None:intergenic | 45.0% |
| ! | TTTCTGCTGATGGGTCTGTT+AGG | - | chr3.1:74828848-74828867 | MS.gene06812:CDS | 45.0% |
| !! | AAACGAAGCAAAGGGGTATC+TGG | + | chr3.1:74828928-74828947 | None:intergenic | 45.0% |
| !! | TCGTTTGGCTTGGAACAAGA+AGG | - | chr3.1:74828942-74828961 | MS.gene06812:CDS | 45.0% |
| AACTACACCGGTGGCAGAAT+TGG | - | chr3.1:74829032-74829051 | MS.gene06812:CDS | 50.0% | |
| AATTCTGCCACCGGTGTAGT+TGG | + | chr3.1:74829033-74829052 | None:intergenic | 50.0% | |
| ACATGGCGTAGAGTGGGTAT+GGG | + | chr3.1:74828336-74828355 | None:intergenic | 50.0% | |
| AGATGGACATGGCGTAGAGT+GGG | + | chr3.1:74828342-74828361 | None:intergenic | 50.0% | |
| CCAAGCCAAACGAAGCAAAG+GGG | + | chr3.1:74828935-74828954 | None:intergenic | 50.0% | |
| CTGGAGAGAAGAATGTGTGG+CGG | + | chr3.1:74828533-74828552 | None:intergenic | 50.0% | |
| GAATTGGAGAGACATCGTGC+TGG | - | chr3.1:74829048-74829067 | MS.gene06812:CDS | 50.0% | |
| GATGCGTTGTTGTGGGGAAT+TGG | + | chr3.1:74828374-74828393 | None:intergenic | 50.0% | |
| GGATGATCGAAGGAGAGTGA+AGG | + | chr3.1:74828481-74828500 | None:intergenic | 50.0% | |
| GGGATGGAACATGAGTTTGG+TGG | + | chr3.1:74828512-74828531 | None:intergenic | 50.0% | |
| TAGATCACCAACTACACCGG+TGG | - | chr3.1:74829023-74829042 | MS.gene06812:CDS | 50.0% | |
| TCGAAGGAGAGTGAAGGTTG+AGG | + | chr3.1:74828475-74828494 | None:intergenic | 50.0% | |
| TCGGAGATGGGATTCTTGTG+TGG | + | chr3.1:74828284-74828303 | None:intergenic | 50.0% | |
| TGGAGAGAAGAATGTGTGGC+GGG | + | chr3.1:74828532-74828551 | None:intergenic | 50.0% | |
| TGTCTCTCCAATTCTGCCAC+CGG | + | chr3.1:74829042-74829061 | None:intergenic | 50.0% | |
| TTTCGCGAACTTCCCAGAGA+CGG | + | chr3.1:74828597-74828616 | None:intergenic | 50.0% | |
| ! | ATGAGTTTGGTGGGTGGGTA+AGG | + | chr3.1:74828502-74828521 | None:intergenic | 50.0% |
| ! | CTGGTGTCAATGCGATTGCT+TGG | - | chr3.1:74829067-74829086 | MS.gene06812:CDS | 50.0% |
| ! | GGAACATGAGTTTGGTGGGT+GGG | + | chr3.1:74828507-74828526 | None:intergenic | 50.0% |
| ! | GGCTCTTATTTGGGAGTTGC+CGG | - | chr3.1:74829137-74829156 | MS.gene06812:CDS | 50.0% |
| ! | GGTTTGAGTGAGAGTGTGTC+AGG | + | chr3.1:74828454-74828473 | None:intergenic | 50.0% |
| ! | TGGAACATGAGTTTGGTGGG+TGG | + | chr3.1:74828508-74828527 | None:intergenic | 50.0% |
| !! | AGCAAAGGGGTATCTGGTTG+TGG | + | chr3.1:74828922-74828941 | None:intergenic | 50.0% |
| !! | GGAATTGGTGTTGGGAGAGA+TGG | + | chr3.1:74828359-74828378 | None:intergenic | 50.0% |
| AACGGCGATGCGTTGTTGTG+GGG | + | chr3.1:74828380-74828399 | None:intergenic | 55.0% | |
| CAACGGCGATGCGTTGTTGT+GGG | + | chr3.1:74828381-74828400 | None:intergenic | 55.0% | |
| CATGGCGTAGAGTGGGTATG+GGG | + | chr3.1:74828335-74828354 | None:intergenic | 55.0% | |
| CCAGAGACGGAGATAGTCAC+CGG | + | chr3.1:74828584-74828603 | None:intergenic | 55.0% | |
| CCCCTTTGCTTCGTTTGGCT+TGG | - | chr3.1:74828932-74828951 | MS.gene06812:CDS | 55.0% | |
| CGGTGACTATCTCCGTCTCT+GGG | - | chr3.1:74828582-74828601 | MS.gene06812:CDS | 55.0% | |
| GACATGGCGTAGAGTGGGTA+TGG | + | chr3.1:74828337-74828356 | None:intergenic | 55.0% | |
| GAGATGGACATGGCGTAGAG+TGG | + | chr3.1:74828343-74828362 | None:intergenic | 55.0% | |
| GGCGGGATGGAACATGAGTT+TGG | + | chr3.1:74828515-74828534 | None:intergenic | 55.0% | |
| GGGTGGGTAAGGATGATCGA+AGG | + | chr3.1:74828491-74828510 | None:intergenic | 55.0% | |
| GGTCTGCTGTTCAGCCTGAT+TGG | - | chr3.1:74829232-74829251 | MS.gene06812:CDS | 55.0% | |
| TTCTGGTGGGGATGATGCAC+AGG | - | chr3.1:74829116-74829135 | MS.gene06812:CDS | 55.0% | |
| ! | GAGAAGAATGTGTGGCGGGA+TGG | + | chr3.1:74828528-74828547 | None:intergenic | 55.0% |
| ! | GGTGTTGGGAGAGATGGACA+TGG | + | chr3.1:74828353-74828372 | None:intergenic | 55.0% |
| ! | TATTTGGGAGTTGCCGGCTG+TGG | - | chr3.1:74829143-74829162 | MS.gene06812:CDS | 55.0% |
| CCAACGGCGATGCGTTGTTG+TGG | + | chr3.1:74828382-74828401 | None:intergenic | 60.0% | |
| CCACAACAACGCATCGCCGT+TGG | - | chr3.1:74828379-74828398 | MS.gene06812:CDS | 60.0% | |
| CCGGTGACTATCTCCGTCTC+TGG | - | chr3.1:74828581-74828600 | MS.gene06812:CDS | 60.0% | |
| GAGACGGAGATAGTCACCGG+AGG | + | chr3.1:74828581-74828600 | None:intergenic | 60.0% | |
| GATAGTCACCGGAGGTAGCG+AGG | + | chr3.1:74828573-74828592 | None:intergenic | 60.0% | |
| ! | GGAGGTCGGAGGAGGTTTTC+TGG | + | chr3.1:74828552-74828571 | None:intergenic | 60.0% |
| ACCGGAGGTAGCGAGGAGGT+CGG | + | chr3.1:74828566-74828585 | None:intergenic | 65.0% | |
| AGTCACCGGAGGTAGCGAGG+AGG | + | chr3.1:74828570-74828589 | None:intergenic | 65.0% | |
| CCATTCGGACCAGCCACAGC+CGG | + | chr3.1:74829159-74829178 | None:intergenic | 65.0% | |
| TCCGACCTCCTCGCTACCTC+CGG | - | chr3.1:74828562-74828581 | MS.gene06812:CDS | 65.0% | |
| ! | CGGCTGTGGCTGGTCCGAAT+GGG | - | chr3.1:74829157-74829176 | MS.gene06812:CDS | 65.0% |
| GGAGGTAGCGAGGAGGTCGG+AGG | + | chr3.1:74828563-74828582 | None:intergenic | 70.0% | |
| GGTAGCGAGGAGGTCGGAGG+AGG | + | chr3.1:74828560-74828579 | None:intergenic | 70.0% | |
| ! | CCGGCTGTGGCTGGTCCGAA+TGG | - | chr3.1:74829156-74829175 | MS.gene06812:CDS | 70.0% |
| ! | TGGGAGTTGCCGGCTGTGGC+TGG | - | chr3.1:74829147-74829166 | MS.gene06812:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 74828271 | 74829299 | 74828271 | ID=MS.gene06812 |
| chr3.1 | mRNA | 74828271 | 74829299 | 74828271 | ID=MS.gene06812.t1;Parent=MS.gene06812 |
| chr3.1 | exon | 74828271 | 74829299 | 74828271 | ID=MS.gene06812.t1.exon1;Parent=MS.gene06812.t1 |
| chr3.1 | CDS | 74828271 | 74829299 | 74828271 | ID=cds.MS.gene06812.t1;Parent=MS.gene06812.t1 |
| Gene Sequence |
| Protein sequence |
