AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068838

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068838.t1 MTR_5g006420 32.278 158 95 2 1 154 325 474 6.39e-20 85.5
MS.gene068838.t1 MTR_7g011100 31.613 155 103 1 1 155 242 393 9.95e-20 85.1
MS.gene068838.t1 MTR_4g130500 27.922 154 107 1 1 154 382 531 4.57e-18 80.5
MS.gene068838.t1 MTR_7g093900 30.968 155 102 2 1 154 298 448 4.90e-18 80.1
MS.gene068838.t1 MTR_7g093900 30.968 155 102 2 1 154 348 498 4.91e-18 80.1
MS.gene068838.t1 MTR_5g095690 29.801 151 102 1 4 154 413 559 2.13e-17 78.6
MS.gene068838.t1 MTR_4g032895 29.299 157 102 4 3 154 616 768 3.91e-17 77.8
MS.gene068838.t1 MTR_7g056073 30.968 155 102 2 1 154 213 363 4.00e-17 77.4
MS.gene068838.t1 MTR_2g048855 31.507 146 93 3 10 154 336 475 1.16e-16 76.3
MS.gene068838.t1 MTR_8g086040 29.221 154 107 1 1 154 212 363 5.03e-16 74.3
MS.gene068838.t1 MTR_2g072010 27.922 154 107 2 1 154 257 406 5.92e-16 74.3
MS.gene068838.t1 MTR_8g098250 27.564 156 107 3 1 155 516 666 6.71e-16 74.3
MS.gene068838.t1 MTR_6g066360 28.662 157 105 4 1 155 289 440 1.00e-15 73.6
MS.gene068838.t1 MTR_4g113830 29.870 154 94 4 1 149 234 378 1.07e-15 73.6
MS.gene068838.t1 MTR_4g113830 31.613 155 92 4 1 149 335 481 1.67e-13 67.4
MS.gene068838.t1 MTR_1g059720 32.353 136 86 3 15 149 186 316 1.10e-15 73.6
MS.gene068838.t1 MTR_2g018870 28.205 156 106 2 1 155 212 362 1.16e-15 73.6
MS.gene068838.t1 MTR_2g018870 28.205 156 104 3 1 154 111 260 2.67e-13 66.6
MS.gene068838.t1 MTR_3g096440 28.571 161 103 3 1 155 248 402 1.24e-15 73.2
MS.gene068838.t1 MTR_3g011920 29.452 146 99 1 10 155 272 413 2.48e-15 72.4
MS.gene068838.t1 MTR_1g014340 28.188 149 103 2 1 149 380 524 2.57e-15 72.4
MS.gene068838.t1 MTR_4g099480 28.667 150 101 2 1 149 233 377 3.10e-15 72.0
MS.gene068838.t1 MTR_7g105540 27.097 155 110 1 1 155 280 431 3.68e-15 72.0
MS.gene068838.t1 MTR_0011s0300 29.032 155 107 1 1 155 218 369 4.08e-15 71.6
MS.gene068838.t1 MTR_0011s0300 35.366 82 53 0 73 154 185 266 4.80e-12 62.8
MS.gene068838.t1 MTR_7g105440 26.452 155 111 1 1 155 280 431 5.67e-15 71.2
MS.gene068838.t1 MTR_3g080230 30.464 151 97 3 1 149 212 356 6.26e-15 71.2
MS.gene068838.t1 MTR_2g071810 27.742 155 108 2 1 155 391 541 7.13e-15 71.2
MS.gene068838.t1 MTR_3g109380 28.571 147 93 3 13 155 226 364 1.00e-14 70.5
MS.gene068838.t1 MTR_8g027150 31.410 156 101 4 1 154 182 333 1.06e-14 70.5
MS.gene068838.t1 MTR_2g036960 28.205 156 106 2 2 155 292 443 1.33e-14 70.5
MS.gene068838.t1 MTR_5g043450 31.944 144 90 2 13 154 489 626 1.88e-14 70.1
MS.gene068838.t1 MTR_5g094220 27.389 157 104 3 1 154 487 636 2.03e-14 69.7
MS.gene068838.t1 MTR_1g040000 29.801 151 99 4 1 149 215 360 2.88e-14 69.3
MS.gene068838.t1 MTR_2g016780 25.806 155 111 2 1 155 258 408 5.04e-14 68.6
MS.gene068838.t1 MTR_7g011030 24.516 155 113 1 1 155 299 449 5.06e-14 68.6
MS.gene068838.t1 MTR_8g089960 26.490 151 105 2 1 150 255 400 7.61e-14 68.2
MS.gene068838.t1 MTR_8g089960 36.842 76 48 0 79 154 228 303 4.62e-11 60.1
MS.gene068838.t1 MTR_1g040635 27.950 161 104 5 1 155 332 486 9.72e-14 67.8
MS.gene068838.t1 MTR_3g084440 34.146 82 54 0 73 154 283 364 1.16e-13 67.8
MS.gene068838.t1 MTR_3g005330 32.031 128 84 2 28 154 214 339 1.33e-13 67.4
MS.gene068838.t1 MTR_0013s0120 28.387 155 106 3 1 154 157 307 2.27e-13 66.6
MS.gene068838.t1 MTR_3g434800 27.586 145 98 2 12 154 329 468 2.40e-13 66.6
MS.gene068838.t1 MTR_7g084830 27.586 145 101 1 1 145 222 362 2.98e-13 66.2
MS.gene068838.t1 MTR_2g087120 26.115 157 108 2 1 155 194 344 3.65e-13 66.2
MS.gene068838.t1 MTR_6g018720 28.289 152 99 2 1 149 249 393 5.05e-13 65.9
MS.gene068838.t1 MTR_1g040585 27.439 164 101 4 1 155 224 378 6.39e-13 65.5
MS.gene068838.t1 MTR_8g089940 27.922 154 107 2 1 154 301 450 6.88e-13 65.5
MS.gene068838.t1 MTR_8g066250 28.125 160 102 4 1 155 275 426 6.92e-13 65.5
MS.gene068838.t1 MTR_8g066250 40.625 64 37 1 92 154 261 324 9.42e-11 59.3
MS.gene068838.t1 MTR_5g043780 26.452 155 111 1 1 155 210 361 7.05e-13 65.5
MS.gene068838.t1 MTR_1g012380 26.623 154 109 2 1 154 199 348 7.52e-13 65.5
MS.gene068838.t1 MTR_4g088840 28.205 156 105 3 1 154 188 338 7.65e-13 65.1
MS.gene068838.t1 MTR_1g040565 27.439 164 101 4 1 155 167 321 8.35e-13 65.1
MS.gene068838.t1 MTR_7g011840 27.097 155 108 2 1 154 289 439 8.87e-13 65.1
MS.gene068838.t1 MTR_5g031490 28.859 149 102 2 6 154 280 424 1.04e-12 65.1
MS.gene068838.t1 MTR_3g012530 31.683 101 68 1 56 155 346 446 1.08e-12 64.7
MS.gene068838.t1 MTR_8g102760 26.573 143 101 2 13 154 181 320 1.08e-12 64.7
MS.gene068838.t1 MTR_7g109860 27.742 155 105 3 1 154 240 388 1.26e-12 64.7
MS.gene068838.t1 MTR_7g016960 24.837 153 105 4 1 149 251 397 1.32e-12 64.7
MS.gene068838.t1 MTR_7g082690 31.313 99 67 1 58 155 283 381 1.36e-12 64.7
MS.gene068838.t1 MTR_2g086150 24.516 155 112 2 1 154 465 615 1.44e-12 64.7
MS.gene068838.t1 MTR_2g086150 24.490 147 103 2 1 147 368 506 2.19e-11 61.2
MS.gene068838.t1 MTR_4g095065 27.500 160 105 2 1 155 222 375 1.86e-12 64.3
MS.gene068838.t1 MTR_6g060510 29.139 151 98 3 1 148 214 358 1.99e-12 64.3
MS.gene068838.t1 MTR_5g049780 28.188 149 103 2 6 154 280 424 2.00e-12 63.9
MS.gene068838.t1 MTR_4g011570 26.027 146 94 2 15 154 82 219 2.10e-12 63.9
MS.gene068838.t1 MTR_4g011570 28.906 128 86 3 28 155 500 622 1.61e-11 61.6
MS.gene068838.t1 MTR_7g106930 25.974 154 107 2 1 154 86 232 2.49e-12 63.9
MS.gene068838.t1 MTR_1g083890 25.625 160 104 3 1 154 211 361 2.62e-12 63.5
MS.gene068838.t1 MTR_4g024860 24.516 155 111 2 1 154 362 511 2.72e-12 63.9
MS.gene068838.t1 MTR_4g131300 25.000 156 111 2 1 155 392 542 2.96e-12 63.5
MS.gene068838.t1 MTR_5g018370 32.051 78 53 0 77 154 461 538 3.07e-12 63.5
MS.gene068838.t1 MTR_7g076707 29.299 157 103 3 1 155 280 430 3.44e-12 63.5
MS.gene068838.t1 MTR_2g021710 28.025 157 105 3 1 154 420 571 3.48e-12 63.5
MS.gene068838.t1 MTR_5g008840 25.641 156 108 3 1 154 490 639 3.58e-12 63.5
MS.gene068838.t1 MTR_4g074150 27.333 150 103 2 1 149 280 424 3.62e-12 63.2
MS.gene068838.t1 MTR_7g089260 25.641 156 109 3 1 154 396 546 3.83e-12 63.5
MS.gene068838.t1 MTR_3g466010 27.097 155 107 2 1 154 217 366 4.20e-12 63.2
MS.gene068838.t1 MTR_4g094592 33.696 92 61 0 64 155 373 464 4.25e-12 63.2
MS.gene068838.t1 MTR_4g133610 28.814 118 77 2 43 154 314 430 6.32e-12 62.8
MS.gene068838.t1 MTR_1g071240 32.941 85 57 0 70 154 589 673 7.60e-12 62.4
MS.gene068838.t1 MTR_4g073930 35.211 71 46 0 84 154 259 329 7.79e-12 62.4
MS.gene068838.t1 MTR_4g108030 29.710 138 90 2 15 149 274 407 8.34e-12 62.4
MS.gene068838.t1 MTR_2g101710 27.152 151 104 3 1 151 220 364 8.80e-12 62.4
MS.gene068838.t1 MTR_6g032915 25.161 155 112 2 1 155 659 809 9.32e-12 62.4
MS.gene068838.t1 MTR_8g096030 28.667 150 101 2 1 149 216 360 1.00e-11 62.0
MS.gene068838.t1 MTR_4g074470 29.710 138 90 2 15 149 272 405 1.01e-11 62.0
MS.gene068838.t1 MTR_4g078750 29.008 131 86 2 28 155 220 346 1.17e-11 61.6
MS.gene068838.t1 MTR_4g085110 34.615 78 51 0 77 154 383 460 1.28e-11 61.6
MS.gene068838.t1 MTR_8g015530 29.747 158 104 2 2 153 73 229 1.29e-11 61.2
MS.gene068838.t1 MTR_2g007570 30.337 89 62 0 66 154 342 430 1.32e-11 61.6
MS.gene068838.t1 MTR_5g008690 30.275 109 75 1 46 154 341 448 1.34e-11 61.6
MS.gene068838.t1 MTR_1g039030 26.923 156 106 2 1 154 482 631 1.43e-11 61.6
MS.gene068838.t1 MTR_4g119120 26.752 157 109 2 1 155 300 452 1.58e-11 61.6
MS.gene068838.t1 MTR_1g007600 23.871 155 114 2 1 155 513 663 1.59e-11 61.6
MS.gene068838.t1 MTR_3g089880 27.632 152 100 2 1 149 249 393 1.77e-11 61.2
MS.gene068838.t1 MTR_5g031630 36.364 77 49 0 78 154 284 360 1.86e-11 61.2
MS.gene068838.t1 MTR_4g087150 25.161 155 112 2 1 155 404 554 1.89e-11 61.2
MS.gene068838.t1 MTR_1g038860 28.302 159 105 4 1 155 300 453 2.09e-11 61.2
MS.gene068838.t1 MTR_5g043920 27.027 148 97 3 13 155 195 336 2.12e-11 61.2
MS.gene068838.t1 MTR_7g417770 24.540 163 103 5 1 155 545 695 2.18e-11 61.2
MS.gene068838.t1 MTR_7g017700 24.540 163 103 5 1 155 545 695 2.18e-11 61.2
MS.gene068838.t1 MTR_8g063290 28.205 156 104 3 1 154 259 408 2.26e-11 61.2
MS.gene068838.t1 MTR_3g045450 26.452 155 109 3 1 154 510 660 2.56e-11 60.8
MS.gene068838.t1 MTR_5g018690 24.648 142 103 2 13 154 350 487 2.59e-11 60.8
MS.gene068838.t1 MTR_4g113240 30.392 102 70 1 55 155 664 765 3.04e-11 60.8
MS.gene068838.t1 MTR_3g408390 27.344 128 91 1 28 155 47 172 3.19e-11 60.5
MS.gene068838.t1 MTR_7g079860 29.032 155 104 2 1 154 354 503 3.29e-11 60.5
MS.gene068838.t1 MTR_2g013500 26.115 157 108 4 1 154 229 380 3.66e-11 60.5
MS.gene068838.t1 MTR_1g073300 25.694 144 103 2 11 154 404 543 4.13e-11 60.5
MS.gene068838.t1 MTR_4g094692 24.516 155 113 2 1 155 446 596 4.36e-11 60.1
MS.gene068838.t1 MTR_4g023510 26.582 158 110 3 1 155 217 371 4.40e-11 60.1
MS.gene068838.t1 MTR_3g117150 26.582 158 106 2 1 155 168 318 4.57e-11 60.1
MS.gene068838.t1 MTR_4g082470 26.115 157 107 2 1 155 313 462 4.69e-11 60.1
MS.gene068838.t1 MTR_5g067140 28.276 145 96 3 13 155 379 517 5.08e-11 60.1
MS.gene068838.t1 MTR_7g113540 35.366 82 53 0 73 154 391 472 5.95e-11 59.7
MS.gene068838.t1 MTR_3g096420 25.641 156 114 2 1 154 356 511 6.03e-11 59.7
MS.gene068838.t1 MTR_6g012850 36.709 79 49 1 77 155 300 377 6.22e-11 59.7
MS.gene068838.t1 MTR_7g033400 27.333 150 104 2 1 149 211 356 6.49e-11 59.7
MS.gene068838.t1 MTR_7g078360 25.641 156 110 2 1 154 359 510 7.98e-11 59.3
MS.gene068838.t1 MTR_5g023040 27.273 143 98 2 13 154 439 576 8.04e-11 59.7
MS.gene068838.t1 MTR_1g084570 26.241 141 100 2 15 155 295 431 8.72e-11 59.3
MS.gene068838.t1 MTR_5g013950 23.226 155 115 2 1 154 434 585 9.43e-11 59.3
MS.gene068838.t1 MTR_1g041310 25.000 156 111 2 1 155 412 562 9.61e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068838.t1 AT3G02330 28.662 157 104 3 1 155 574 724 1.73e-18 81.6
MS.gene068838.t1 AT5G40405 31.333 150 97 2 1 149 211 355 1.92e-17 78.6
MS.gene068838.t1 AT5G40405 31.333 150 97 2 1 149 211 355 1.92e-17 78.6
MS.gene068838.t1 AT4G14820 29.221 154 105 1 1 154 315 464 2.24e-17 78.6
MS.gene068838.t1 AT2G02980 31.447 159 95 3 1 154 201 350 2.42e-17 78.2
MS.gene068838.t1 AT1G06140 29.012 162 97 3 1 155 283 433 6.06e-17 77.0
MS.gene068838.t1 AT1G06140 25.641 156 109 2 1 154 181 331 2.05e-12 63.9
MS.gene068838.t1 AT1G13410 30.769 156 104 2 1 155 158 310 6.49e-17 77.0
MS.gene068838.t1 AT1G08070 33.113 151 95 3 1 149 234 380 1.37e-16 76.3
MS.gene068838.t1 AT1G08070 25.658 152 103 3 1 149 133 277 9.44e-12 62.4
MS.gene068838.t1 AT1G08070 33.113 151 95 3 1 149 338 484 1.55e-16 75.9
MS.gene068838.t1 AT1G08070 25.658 152 103 3 1 149 237 381 1.21e-11 62.0
MS.gene068838.t1 AT3G09040 25.161 155 111 3 1 154 703 853 2.22e-16 75.5
MS.gene068838.t1 AT3G09040 25.161 155 111 3 1 154 703 853 2.22e-16 75.5
MS.gene068838.t1 AT3G09040 25.161 155 111 3 1 154 728 878 2.40e-16 75.5
MS.gene068838.t1 AT3G09040 25.161 155 111 3 1 154 728 878 2.40e-16 75.5
MS.gene068838.t1 AT2G03880 26.452 155 108 2 1 155 231 379 3.36e-16 75.1
MS.gene068838.t1 AT2G35030 25.316 158 111 3 1 155 301 454 4.40e-16 74.7
MS.gene068838.t1 AT1G26900 32.432 148 92 4 1 146 198 339 8.18e-16 73.9
MS.gene068838.t1 AT4G39952 41.463 82 47 1 73 154 472 552 1.45e-15 73.2
MS.gene068838.t1 AT4G39952 23.377 154 114 2 1 154 504 653 5.65e-11 60.1
MS.gene068838.t1 AT5G39680 25.161 155 112 1 1 155 309 459 1.57e-15 73.2
MS.gene068838.t1 AT4G20770 26.752 157 108 3 1 155 489 640 2.30e-15 72.8
MS.gene068838.t1 AT4G30700 26.623 154 109 1 1 154 391 540 2.35e-15 72.8
MS.gene068838.t1 AT2G33680 28.025 157 105 4 1 155 458 608 3.66e-15 72.0
MS.gene068838.t1 AT2G33680 28.025 157 105 4 1 155 458 608 3.66e-15 72.0
MS.gene068838.t1 AT2G33680 28.025 157 105 4 1 155 458 608 3.66e-15 72.0
MS.gene068838.t1 AT2G33680 28.025 157 105 4 1 155 394 544 4.06e-15 72.0
MS.gene068838.t1 AT2G33680 28.025 157 105 4 1 155 394 544 4.06e-15 72.0
MS.gene068838.t1 AT2G33680 28.025 157 105 4 1 155 394 544 4.06e-15 72.0
MS.gene068838.t1 AT2G33680 28.025 157 105 4 1 155 469 619 4.20e-15 72.0
MS.gene068838.t1 AT2G33680 28.025 157 105 4 1 155 449 599 4.23e-15 72.0
MS.gene068838.t1 AT3G53360 26.752 157 107 2 1 155 444 594 4.87e-15 71.6
MS.gene068838.t1 AT3G53360 26.752 157 107 2 1 155 444 594 4.87e-15 71.6
MS.gene068838.t1 AT1G59720 32.911 158 98 4 1 154 223 376 1.08e-14 70.5
MS.gene068838.t1 AT2G34400 27.273 154 105 3 1 154 305 451 1.43e-14 70.5
MS.gene068838.t1 AT2G34400 25.641 156 108 2 1 154 204 353 4.15e-12 63.2
MS.gene068838.t1 AT2G34400 25.694 144 103 2 11 154 113 252 5.20e-11 60.1
MS.gene068838.t1 AT5G56310 26.846 149 105 2 1 149 221 365 1.65e-14 70.1
MS.gene068838.t1 AT1G50270 29.032 155 104 2 1 154 277 426 1.75e-14 70.1
MS.gene068838.t1 AT1G50270 23.125 160 108 3 1 154 175 325 3.80e-11 60.5
MS.gene068838.t1 AT3G15130 29.487 156 104 3 1 154 78 229 1.78e-14 70.1
MS.gene068838.t1 AT1G06143 27.742 155 106 3 1 154 258 407 1.86e-14 70.1
MS.gene068838.t1 AT1G33350 31.973 147 90 4 13 154 242 383 1.95e-14 69.7
MS.gene068838.t1 AT1G33350 31.973 147 90 4 13 154 242 383 1.95e-14 69.7
MS.gene068838.t1 AT4G16835 26.623 154 99 3 1 149 255 399 2.00e-14 70.1
MS.gene068838.t1 AT5G44230 26.752 157 108 3 1 154 252 404 2.14e-14 69.7
MS.gene068838.t1 AT3G14330 31.159 138 91 2 12 149 319 452 2.19e-14 69.7
MS.gene068838.t1 AT1G32415 33.708 89 59 0 67 155 501 589 2.21e-14 69.7
MS.gene068838.t1 AT5G44230 26.752 157 108 3 1 154 155 307 2.29e-14 69.7
MS.gene068838.t1 AT4G19191 29.032 155 107 3 1 155 328 479 2.50e-14 69.7
MS.gene068838.t1 AT5G50390 26.923 156 108 3 1 155 296 446 3.86e-14 68.9
MS.gene068838.t1 AT4G32430 27.439 164 98 5 1 155 444 595 4.26e-14 68.9
MS.gene068838.t1 AT4G32430 27.439 164 98 5 1 155 312 463 4.69e-14 68.9
MS.gene068838.t1 AT5G50990 26.923 156 107 3 1 154 135 285 8.01e-14 68.2
MS.gene068838.t1 AT4G39530 26.452 155 110 2 1 155 526 676 9.13e-14 68.2
MS.gene068838.t1 AT5G42450 25.157 159 112 4 1 155 112 267 1.04e-13 67.8
MS.gene068838.t1 AT5G66520 26.923 156 106 2 1 154 218 367 1.08e-13 67.8
MS.gene068838.t1 AT5G42450 25.157 159 112 4 1 155 196 351 1.13e-13 67.8
MS.gene068838.t1 AT4G21065 28.662 157 105 3 1 155 60 211 1.56e-13 67.4
MS.gene068838.t1 AT4G21065 36.145 83 53 0 72 154 26 108 1.58e-12 64.3
MS.gene068838.t1 AT1G28690 39.241 79 48 0 77 155 316 394 2.30e-13 66.6
MS.gene068838.t1 AT1G53600 28.000 150 102 2 1 149 409 553 2.39e-13 67.0
MS.gene068838.t1 AT1G53600 28.000 150 102 2 1 149 409 553 2.39e-13 67.0
MS.gene068838.t1 AT2G22410 26.452 155 108 2 1 154 360 509 2.39e-13 66.6
MS.gene068838.t1 AT2G29760 30.000 130 85 2 18 146 119 243 2.59e-13 66.6
MS.gene068838.t1 AT2G39620 26.623 154 109 1 1 154 575 724 2.63e-13 66.6
MS.gene068838.t1 AT1G14470 26.203 187 85 3 13 146 89 275 2.70e-13 66.6
MS.gene068838.t1 AT1G69350 31.690 142 88 3 15 154 390 524 2.96e-13 66.6
MS.gene068838.t1 AT1G69350 25.000 152 105 3 1 149 274 419 1.16e-12 64.7
MS.gene068838.t1 AT4G01030 29.861 144 97 2 12 155 378 517 3.28e-13 66.6
MS.gene068838.t1 AT4G21065 28.662 157 105 3 1 155 193 344 3.37e-13 66.2
MS.gene068838.t1 AT4G21065 36.145 83 53 0 72 154 159 241 1.77e-12 64.3
MS.gene068838.t1 AT2G27610 24.224 161 108 3 1 155 368 520 3.60e-13 66.2
MS.gene068838.t1 AT2G27610 22.930 157 112 3 1 154 465 615 3.90e-11 60.5
MS.gene068838.t1 AT2G13600 25.641 156 114 2 1 154 357 512 4.08e-13 66.2
MS.gene068838.t1 AT2G13600 24.324 148 106 2 1 147 123 265 6.74e-11 59.7
MS.gene068838.t1 AT2G35130 25.000 188 105 4 1 152 161 348 4.32e-13 65.9
MS.gene068838.t1 AT5G08305 26.974 152 104 4 1 149 211 358 4.81e-13 65.9
MS.gene068838.t1 AT3G20730 36.145 83 53 0 73 155 357 439 5.15e-13 65.9
MS.gene068838.t1 AT3G20730 30.075 133 87 2 13 144 97 224 8.84e-11 59.3
MS.gene068838.t1 AT4G13650 24.516 155 113 2 1 155 663 813 5.73e-13 65.9
MS.gene068838.t1 AT4G14050 32.927 82 55 0 73 154 224 305 6.73e-13 65.5
MS.gene068838.t1 AT4G14050 32.927 82 55 0 73 154 277 358 6.85e-13 65.5
MS.gene068838.t1 AT3G47530 28.750 160 101 4 1 154 185 337 6.87e-13 65.5
MS.gene068838.t1 AT5G09950 28.662 157 105 3 1 155 590 741 8.29e-13 65.5
MS.gene068838.t1 AT5G09950 28.662 157 105 3 1 155 590 741 8.29e-13 65.5
MS.gene068838.t1 AT5G09950 28.662 157 105 3 1 155 584 735 8.61e-13 65.1
MS.gene068838.t1 AT3G49170 30.909 110 75 1 46 155 487 595 1.10e-12 65.1
MS.gene068838.t1 AT5G48910 32.039 103 67 1 55 154 191 293 1.30e-12 64.7
MS.gene068838.t1 AT1G03540 32.941 85 57 0 70 154 398 482 1.32e-12 64.7
MS.gene068838.t1 AT1G77170 26.573 143 101 2 13 154 201 340 1.60e-12 64.3
MS.gene068838.t1 AT3G26630 26.923 156 109 2 1 155 222 373 1.61e-12 64.3
MS.gene068838.t1 AT5G46460 27.097 155 107 2 1 154 297 446 2.20e-12 63.9
MS.gene068838.t1 AT1G09190 29.605 152 91 4 10 154 214 356 2.44e-12 63.9
MS.gene068838.t1 AT4G33170 28.477 151 100 3 1 149 589 733 2.65e-12 63.9
MS.gene068838.t1 AT5G06540 27.389 157 106 2 1 155 220 370 2.85e-12 63.5
MS.gene068838.t1 AT3G29230 29.167 120 81 1 36 155 321 436 2.97e-12 63.5
MS.gene068838.t1 AT2G15690 27.737 137 94 3 19 155 226 357 3.13e-12 63.5
MS.gene068838.t1 AT4G22760 28.931 159 103 3 1 155 300 452 3.51e-12 63.5
MS.gene068838.t1 AT1G15510 30.000 110 75 2 46 155 511 618 3.59e-12 63.5
MS.gene068838.t1 AT1G17630 26.897 145 102 2 10 154 414 554 5.21e-12 63.2
MS.gene068838.t1 AT1G17630 26.897 145 102 2 10 154 414 554 5.21e-12 63.2
MS.gene068838.t1 AT3G49710 26.752 157 107 3 1 154 315 466 5.46e-12 62.8
MS.gene068838.t1 AT1G11290 23.973 146 107 2 1 146 308 449 5.71e-12 62.8
MS.gene068838.t1 AT3G22150 25.316 158 108 2 1 155 492 642 6.35e-12 62.8
MS.gene068838.t1 AT3G22150 25.316 158 108 2 1 155 492 642 6.35e-12 62.8
MS.gene068838.t1 AT3G57430 22.754 167 112 3 1 155 477 638 6.42e-12 62.8
MS.gene068838.t1 AT3G57430 30.909 110 70 1 44 147 102 211 8.93e-11 59.3
MS.gene068838.t1 AT2G36980 25.974 154 110 1 1 154 156 305 9.41e-12 62.0
MS.gene068838.t1 AT1G71460 37.500 72 45 0 78 149 563 634 9.56e-12 62.4
MS.gene068838.t1 AT5G59200 26.667 150 104 2 1 149 226 370 1.08e-11 62.0
MS.gene068838.t1 AT3G08820 25.503 149 107 3 1 149 183 327 1.10e-11 62.0
MS.gene068838.t1 AT2G36980 26.623 154 109 2 1 154 308 457 1.19e-11 62.0
MS.gene068838.t1 AT5G15300 24.528 159 110 4 1 154 246 399 1.24e-11 62.0
MS.gene068838.t1 AT2G36980 26.623 154 109 2 1 154 299 448 1.26e-11 62.0
MS.gene068838.t1 AT4G18840 25.000 152 105 4 1 149 274 419 1.40e-11 61.6
MS.gene068838.t1 AT4G18840 25.000 152 105 4 1 149 274 419 1.40e-11 61.6
MS.gene068838.t1 AT4G18840 25.000 152 105 4 1 149 274 419 1.40e-11 61.6
MS.gene068838.t1 AT1G31430 28.205 156 104 3 1 154 250 399 1.62e-11 61.6
MS.gene068838.t1 AT1G31430 28.205 156 104 3 1 154 250 399 1.62e-11 61.6
MS.gene068838.t1 AT3G24000 26.415 159 105 3 3 155 231 383 1.63e-11 61.6
MS.gene068838.t1 AT2G03380 28.000 150 92 2 12 154 425 565 2.12e-11 61.2
MS.gene068838.t1 AT3G62890 30.247 162 100 6 1 154 165 321 3.26e-11 60.5
MS.gene068838.t1 AT2G44880 27.742 155 106 4 1 154 284 433 3.83e-11 60.5
MS.gene068838.t1 AT2G44880 27.742 155 106 4 1 154 244 393 3.89e-11 60.5
MS.gene068838.t1 AT2G42920 35.526 76 49 0 79 154 202 277 3.97e-11 60.5
MS.gene068838.t1 AT2G42920 35.526 76 49 0 79 154 202 277 3.97e-11 60.5
MS.gene068838.t1 AT2G44880 27.742 155 106 4 1 154 283 432 4.18e-11 60.5
MS.gene068838.t1 AT2G44880 27.742 155 106 4 1 154 285 434 4.22e-11 60.5
MS.gene068838.t1 AT2G44880 27.742 155 106 4 1 154 285 434 4.22e-11 60.5
MS.gene068838.t1 AT2G44880 27.742 155 106 4 1 154 287 436 4.39e-11 60.1
MS.gene068838.t1 AT2G22070 34.940 83 53 1 73 154 452 534 4.62e-11 60.1
MS.gene068838.t1 AT1G09220 28.758 153 101 4 1 149 226 374 5.50e-11 60.1
MS.gene068838.t1 AT4G35130 28.662 157 104 3 1 155 402 552 6.01e-11 60.1
MS.gene068838.t1 AT5G66500 35.955 89 54 2 68 154 316 403 7.42e-11 59.7
MS.gene068838.t1 AT3G51320 25.316 158 106 2 1 154 221 370 7.71e-11 59.7
MS.gene068838.t1 AT2G37320 25.000 160 105 3 1 154 192 342 9.96e-11 59.3

Find 19 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAAGGCCTCAAAGAAAT+TGG 0.115736 3.2:+41185032 MS.gene068838:CDS
GCAACAAACGTAAATGAATT+AGG 0.209048 3.2:-41185321 None:intergenic
TATGTCTTCAACTTTAATTA+TGG 0.346926 3.2:-41185067 None:intergenic
CAACAAACGTAAATGAATTA+GGG 0.351153 3.2:-41185320 None:intergenic
CAAACAAATTTAAGACATCT+TGG 0.370571 3.2:-41184957 None:intergenic
ATCAAGGCCTCAAAGAAATT+GGG 0.399448 3.2:+41185033 MS.gene068838:CDS
AGAAGGTATGTGTCTTCATT+AGG 0.413719 3.2:-41185006 None:intergenic
TCAAAGAAATTGGGTTTACT+TGG 0.424015 3.2:+41185042 MS.gene068838:CDS
AAGTAAACCCAATTTCTTTG+AGG 0.431983 3.2:-41185040 None:intergenic
AATGTGATGGACGATCTCTT+TGG 0.435057 3.2:+41185141 MS.gene068838:CDS
TGCACACAACGGTATGTTTG+AGG 0.443354 3.2:+41185254 MS.gene068838:CDS
TTGAGGCCTTGATGAAAAGA+AGG 0.459610 3.2:-41185023 None:intergenic
TTGTTCGCTTGTTCAAATGC+TGG 0.461331 3.2:+41185348 MS.gene068838:CDS
AATGCTGGACGCTTCTACAA+AGG 0.471864 3.2:+41185363 MS.gene068838:CDS
CTCGCGACTGTAACAGTGCA+TGG 0.504182 3.2:+41185169 MS.gene068838:CDS
GATGGACGATCTCTTTGGAA+AGG 0.614788 3.2:+41185146 MS.gene068838:CDS
TCGCGACTGTAACAGTGCAT+GGG 0.618955 3.2:+41185170 MS.gene068838:CDS
AACAAACGTAAATGAATTAG+GGG 0.640899 3.2:-41185319 None:intergenic
TAGATCTGAAGGCTTGTCGT+TGG 0.651266 3.2:-41185112 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTCTTCAACTTTAATTA+TGG - chr3.2:41185070-41185089 None:intergenic 20.0%
!!! ATACATATTTTTCTCTTTGA+TGG - chr3.2:41185208-41185227 None:intergenic 20.0%
! AACAAACGTAAATGAATTAG+GGG - chr3.2:41185322-41185341 None:intergenic 25.0%
! AAGAGAAAAATATGTATTCG+TGG + chr3.2:41185211-41185230 MS.gene068838:CDS 25.0%
! CAACAAACGTAAATGAATTA+GGG - chr3.2:41185323-41185342 None:intergenic 25.0%
!! CAAACAAATTTAAGACATCT+TGG - chr3.2:41184960-41184979 None:intergenic 25.0%
AAGTAAACCCAATTTCTTTG+AGG - chr3.2:41185043-41185062 None:intergenic 30.0%
AGATCTATGCAAAAATGTGA+TGG + chr3.2:41185128-41185147 MS.gene068838:CDS 30.0%
GCAACAAACGTAAATGAATT+AGG - chr3.2:41185324-41185343 None:intergenic 30.0%
TCAAAGAAATTGGGTTTACT+TGG + chr3.2:41185042-41185061 MS.gene068838:CDS 30.0%
! ACATTTTTGCATAGATCTGA+AGG - chr3.2:41185126-41185145 None:intergenic 30.0%
ATCAAGGCCTCAAAGAAATT+GGG + chr3.2:41185033-41185052 MS.gene068838:CDS 35.0%
! AGAAGGTATGTGTCTTCATT+AGG - chr3.2:41185009-41185028 None:intergenic 35.0%
! CACATACCTTCTTTTCATCA+AGG + chr3.2:41185017-41185036 MS.gene068838:CDS 35.0%
CATCAAGGCCTCAAAGAAAT+TGG + chr3.2:41185032-41185051 MS.gene068838:CDS 40.0%
TTGAGGCCTTGATGAAAAGA+AGG - chr3.2:41185026-41185045 None:intergenic 40.0%
TTGTTCGCTTGTTCAAATGC+TGG + chr3.2:41185348-41185367 MS.gene068838:CDS 40.0%
!! AATGTGATGGACGATCTCTT+TGG + chr3.2:41185141-41185160 MS.gene068838:CDS 40.0%
AATGCTGGACGCTTCTACAA+AGG + chr3.2:41185363-41185382 MS.gene068838:CDS 45.0%
TAGATCTGAAGGCTTGTCGT+TGG - chr3.2:41185115-41185134 None:intergenic 45.0%
TGCACACAACGGTATGTTTG+AGG + chr3.2:41185254-41185273 MS.gene068838:CDS 45.0%
! GATGGACGATCTCTTTGGAA+AGG + chr3.2:41185146-41185165 MS.gene068838:CDS 45.0%
!! CTGACTGCTTTTGCACACAA+CGG + chr3.2:41185243-41185262 MS.gene068838:CDS 45.0%
TCGCGACTGTAACAGTGCAT+GGG + chr3.2:41185170-41185189 MS.gene068838:CDS 50.0%
CTCGCGACTGTAACAGTGCA+TGG + chr3.2:41185169-41185188 MS.gene068838:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 41184925 41185392 41184925 ID=MS.gene068838
chr3.2 mRNA 41184925 41185392 41184925 ID=MS.gene068838.t1;Parent=MS.gene068838
chr3.2 exon 41184925 41185392 41184925 ID=MS.gene068838.t1.exon1;Parent=MS.gene068838.t1
chr3.2 CDS 41184925 41185392 41184925 ID=cds.MS.gene068838.t1;Parent=MS.gene068838.t1
Gene Sequence

>MS.gene068838

ATGATGAATGCTTATATCATGTCTCATCAGAACCAAGATGTCTTAAATTTGTTTGAACTCATGAATGAAACTTCTTGTGTGCCTAATGAAGACACATACCTTCTTTTCATCAAGGCCTCAAAGAAATTGGGTTTACTTGGTACCATAATTAAAGTTGAAGACATAGAGAAGCATGTGCTTCATGTCACCAACGACAAGCCTTCAGATCTATGCAAAAATGTGATGGACGATCTCTTTGGAAAGGCTCGCGACTGTAACAGTGCATGGGAGTATTTCTGTTCCATCAAAGAGAAAAATATGTATTCGTGGAATTCTATGCTGACTGCTTTTGCACACAACGGTATGTTTGAGGACTGTATGAATCTTTTTCAGAGAATGTTATCAGAGAATATTGCCCCTAATTCATTTACGTTTGTTGCTCTATTGTTCGCTTGTTCAAATGCTGGACGCTTCTACAAAGGATTCTAA
Protein sequence

>MS.gene068838.t1

MMNAYIMSHQNQDVLNLFELMNETSCVPNEDTYLLFIKASKKLGLLGTIIKVEDIEKHVLHVTNDKPSDLCKNVMDDLFGKARDCNSAWEYFCSIKEKNMYSWNSMLTAFAHNGMFEDCMNLFQRMLSENIAPNSFTFVALLFACSNAGRFYKGF