Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068863.t1 | XP_003610117.1 | 91.8 | 231 | 19 | 0 | 12 | 242 | 71 | 301 | 1.50E-115 | 425.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068863.t1 | Q8VZP1 | 74.2 | 225 | 58 | 0 | 15 | 239 | 14 | 238 | 6.2e-94 | 345.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068863.t1 | G7JVF5 | 91.8 | 231 | 19 | 0 | 12 | 242 | 71 | 301 | 1.1e-115 | 425.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049887 | MS.gene068863 | 0.806051 | 9.92E-50 | -1.69E-46 |
MS.gene052397 | MS.gene068863 | 0.804653 | 1.95E-49 | -1.69E-46 |
MS.gene052609 | MS.gene068863 | 0.806382 | 8.45E-50 | -1.69E-46 |
MS.gene053143 | MS.gene068863 | 0.800736 | 1.25E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene55353 | MS.gene068863 | PPI |
MS.gene78610 | MS.gene068863 | PPI |
MS.gene068863 | MS.gene53154 | PPI |
MS.gene85927 | MS.gene068863 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068863.t1 | MTR_4g128090 | 91.379 | 232 | 20 | 0 | 11 | 242 | 70 | 301 | 6.42e-154 | 430 |
MS.gene068863.t1 | MTR_4g091060 | 34.667 | 225 | 140 | 4 | 15 | 239 | 8 | 225 | 3.74e-33 | 121 |
MS.gene068863.t1 | MTR_4g091060 | 34.615 | 234 | 143 | 5 | 6 | 239 | 2 | 225 | 2.68e-32 | 121 |
MS.gene068863.t1 | MTR_2g091220 | 33.188 | 229 | 138 | 7 | 15 | 239 | 11 | 228 | 2.30e-23 | 95.1 |
MS.gene068863.t1 | MTR_2g091220 | 33.188 | 229 | 138 | 7 | 15 | 239 | 11 | 228 | 2.88e-23 | 95.1 |
MS.gene068863.t1 | MTR_2g091220 | 35.385 | 195 | 112 | 7 | 15 | 205 | 11 | 195 | 1.30e-22 | 95.1 |
MS.gene068863.t1 | MTR_4g091060 | 35.802 | 162 | 99 | 3 | 78 | 239 | 10 | 166 | 3.38e-21 | 90.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068863.t1 | AT5G57440 | 74.222 | 225 | 58 | 0 | 15 | 239 | 14 | 238 | 1.18e-121 | 346 |
MS.gene068863.t1 | AT4G25840 | 72.368 | 228 | 63 | 0 | 15 | 242 | 71 | 298 | 1.65e-119 | 343 |
MS.gene068863.t1 | AT4G21470 | 32.479 | 234 | 151 | 4 | 6 | 239 | 2 | 228 | 1.07e-30 | 117 |
Find 49 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGATGCATCATGTTGTTCT+TGG | 0.193950 | 8.4:+6317052 | MS.gene068863:CDS |
CTTCTCTTTCAACAAGAAAT+TGG | 0.261291 | 8.4:-6314697 | None:intergenic |
GTTCCAATTGCCGTGGCAAC+TGG | 0.292460 | 8.4:+6316838 | MS.gene068863:CDS |
TACCCAGTTGCCACGGCAAT+TGG | 0.323593 | 8.4:-6316841 | None:intergenic |
GGTTTGCCTTGTTTAACTTC+AGG | 0.330793 | 8.4:-6317082 | None:intergenic |
GTTTGCCTTGTTTAACTTCA+GGG | 0.369613 | 8.4:-6317081 | None:intergenic |
TTACCTCCGTTTGAAGATGA+TGG | 0.422402 | 8.4:+6319075 | MS.gene068863:CDS |
CCTGGCATGAGCTCGCTTGT+TGG | 0.428334 | 8.4:-6314740 | None:intergenic |
TGCTGCAGCCAGGAGATTTG+AGG | 0.448286 | 8.4:+6317123 | MS.gene068863:CDS |
GCCTCTCAAGGCAAAGATGA+TGG | 0.451010 | 8.4:+6314604 | MS.gene068863:CDS |
CAATTTCCATCATCTTCAAA+CGG | 0.457681 | 8.4:-6319081 | None:intergenic |
TGAAAAGATTTGTCCAGCCT+TGG | 0.458300 | 8.4:-6318994 | None:intergenic |
GACATCGACGGAGGAGGGAT+TGG | 0.464703 | 8.4:-6314367 | None:intergenic |
GATTTGTCCAGCCTTGGATC+AGG | 0.474667 | 8.4:-6318988 | None:intergenic |
CCCATCATCTTTGCCTTGAG+AGG | 0.490842 | 8.4:-6314605 | None:intergenic |
ATGTATTTCTTGCTGCAGCC+AGG | 0.492722 | 8.4:+6317113 | MS.gene068863:CDS |
TCCAACAATGAGTCAAAACT+TGG | 0.494559 | 8.4:-6319029 | None:intergenic |
CTCAAGCATCTACATGCAAA+AGG | 0.496114 | 8.4:+6316814 | MS.gene068863:CDS |
GTTCGTGCAGCTAAGAATGC+TGG | 0.496579 | 8.4:+6317384 | MS.gene068863:CDS |
GAGGTAAACGTCCACTCACT+AGG | 0.498018 | 8.4:-6319059 | None:intergenic |
CCAACAAGCGAGCTCATGCC+AGG | 0.507539 | 8.4:+6314740 | MS.gene068863:CDS |
GTTTCTGACATCGACGGAGG+AGG | 0.517684 | 8.4:-6314373 | None:intergenic |
TTATGTTCCTGATCCAAGGC+TGG | 0.522004 | 8.4:+6318981 | MS.gene068863:CDS |
GTTGTTATGTTCCTGATCCA+AGG | 0.524573 | 8.4:+6318977 | MS.gene068863:CDS |
TATATATACCTCAAATCTCC+TGG | 0.525175 | 8.4:-6317131 | None:intergenic |
GCTGCAGCAAGAAATACATC+TGG | 0.528849 | 8.4:-6317109 | None:intergenic |
AACTGAAAACGCAAAGACAC+GGG | 0.538812 | 8.4:+6317017 | MS.gene068863:CDS |
TTCCAATTGCCGTGGCAACT+GGG | 0.540048 | 8.4:+6316839 | MS.gene068863:CDS |
GAAAGCGATTGAAGCTGCTA+AGG | 0.553025 | 8.4:+6314631 | MS.gene068863:CDS |
GACATGGACGGTCTCTTGCT+AGG | 0.555282 | 8.4:+6314416 | MS.gene068863:CDS |
GAACTGAAAACGCAAAGACA+CGG | 0.557091 | 8.4:+6317016 | MS.gene068863:CDS |
CCTCTCAAGGCAAAGATGAT+GGG | 0.558033 | 8.4:+6314605 | MS.gene068863:CDS |
AGAATATTACTCGGATCCAC+TGG | 0.577509 | 8.4:-6317336 | None:intergenic |
TCTTTCAACAAGAAATTGGT+CGG | 0.578381 | 8.4:-6314693 | None:intergenic |
TTTCTGACATCGACGGAGGA+GGG | 0.581706 | 8.4:-6314372 | None:intergenic |
TGAAATTTACCCAGTTGCCA+CGG | 0.584481 | 8.4:-6316848 | None:intergenic |
TGGATTTCAACCCTAGTGAG+TGG | 0.587770 | 8.4:+6319048 | MS.gene068863:CDS |
AGGTAAACGTCCACTCACTA+GGG | 0.601176 | 8.4:-6319058 | None:intergenic |
GCAAGAAATACATCTGGTGA+TGG | 0.606339 | 8.4:-6317103 | None:intergenic |
TGATCAACAGGGTGGACCAG+TGG | 0.613544 | 8.4:+6317320 | MS.gene068863:intron |
CTTAGCTGCACGAACTCCAG+AGG | 0.618799 | 8.4:-6317376 | None:intergenic |
TTAGCTGCACGAACTCCAGA+GGG | 0.640809 | 8.4:-6317375 | None:intergenic |
TTTCCATCATCTTCAAACGG+AGG | 0.641636 | 8.4:-6319078 | None:intergenic |
AAAAGGAGTTCCAATTGCCG+TGG | 0.660340 | 8.4:+6316831 | MS.gene068863:CDS |
GATGACCCTGAAGTTAAACA+AGG | 0.674433 | 8.4:+6317076 | MS.gene068863:CDS |
TGATTGGTTTCTGACATCGA+CGG | 0.685211 | 8.4:-6314379 | None:intergenic |
TTGGTTTCTGACATCGACGG+AGG | 0.685982 | 8.4:-6314376 | None:intergenic |
TTGAAAGAGAAGATATGCTG+CGG | 0.688166 | 8.4:+6314708 | MS.gene068863:CDS |
ACTGAAAACGCAAAGACACG+GGG | 0.708609 | 8.4:+6317018 | MS.gene068863:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAAACCAATAAAA+AGG | - | chr8.4:6315511-6315530 | None:intergenic | 10.0% |
!! | AAAAAAAAAACCAATAAAAA+GGG | - | chr8.4:6315510-6315529 | None:intergenic | 10.0% |
!!! | ATTGGTTTTTTTTTTTTTTT+TGG | + | chr8.4:6315515-6315534 | MS.gene068863:intron | 10.0% |
!!! | CTTTTACTTTTTTTTTTTTT+GGG | + | chr8.4:6316894-6316913 | MS.gene068863:intron | 10.0% |
!!! | TCTTTTACTTTTTTTTTTTT+TGG | + | chr8.4:6316893-6316912 | MS.gene068863:intron | 10.0% |
!!! | TTCTTAAACTTTAATATTTT+TGG | + | chr8.4:6315842-6315861 | MS.gene068863:intron | 10.0% |
!!! | TTTTACTTTTTTTTTTTTTG+GGG | + | chr8.4:6316895-6316914 | MS.gene068863:intron | 10.0% |
!!! | TTTTATTGATTTGTATAAAT+TGG | + | chr8.4:6315011-6315030 | MS.gene068863:intron | 10.0% |
!! | AAAACATTTATATGTTTACT+GGG | + | chr8.4:6317909-6317928 | MS.gene068863:intron | 15.0% |
!! | AAATCCAAAAAAGAATATAA+AGG | - | chr8.4:6318469-6318488 | None:intergenic | 15.0% |
!! | AATAGTACATGATTAAAAAA+TGG | + | chr8.4:6314917-6314936 | MS.gene068863:intron | 15.0% |
!! | TGTATATTATTGATATTTAC+CGG | + | chr8.4:6316121-6316140 | MS.gene068863:intron | 15.0% |
!! | TTGTGAAAAGAATAAAAAAA+GGG | - | chr8.4:6315438-6315457 | None:intergenic | 15.0% |
!! | TTTATATGCTATGAATTATT+TGG | + | chr8.4:6318527-6318546 | MS.gene068863:intron | 15.0% |
!!! | GTTTTTTAACTAAACATATA+TGG | + | chr8.4:6317448-6317467 | MS.gene068863:intron | 15.0% |
!!! | TTTACTTTTTTTTTTTTTGG+GGG | + | chr8.4:6316896-6316915 | MS.gene068863:intron | 15.0% |
!! | AAAATAAGTTAAAATAGCGT+TGG | - | chr8.4:6318083-6318102 | None:intergenic | 20.0% |
!! | AAACTATAAATTCATGTCAA+AGG | - | chr8.4:6316164-6316183 | None:intergenic | 20.0% |
!! | AAATGTAATGAAATTGATCA+AGG | - | chr8.4:6318859-6318878 | None:intergenic | 20.0% |
!! | AATATAAGCAACATTTATAG+TGG | - | chr8.4:6316537-6316556 | None:intergenic | 20.0% |
!! | ATAGGTAACAAACATTATTA+TGG | - | chr8.4:6318266-6318285 | None:intergenic | 20.0% |
!! | ATCTCAATATGTAACTAATT+GGG | + | chr8.4:6315945-6315964 | MS.gene068863:intron | 20.0% |
!! | CAAAACATTTATATGTTTAC+TGG | + | chr8.4:6317908-6317927 | MS.gene068863:intron | 20.0% |
!! | GATAAGTATTTATGCTATAA+GGG | + | chr8.4:6318212-6318231 | MS.gene068863:intron | 20.0% |
!! | GTTGTGAAAAGAATAAAAAA+AGG | - | chr8.4:6315439-6315458 | None:intergenic | 20.0% |
!! | TAAATGTGAATGTTGATATA+GGG | + | chr8.4:6317966-6317985 | MS.gene068863:intron | 20.0% |
!! | TAGAATAAGTTTCATTCTTT+CGG | - | chr8.4:6315484-6315503 | None:intergenic | 20.0% |
!! | TAGGTAACAAACATTATTAT+GGG | - | chr8.4:6318265-6318284 | None:intergenic | 20.0% |
!! | TCAAAAACAAGAATATTACT+CGG | - | chr8.4:6317348-6317367 | None:intergenic | 20.0% |
!! | TGATAAGTATTTATGCTATA+AGG | + | chr8.4:6318211-6318230 | MS.gene068863:intron | 20.0% |
!!! | AAATTTTAACAAATCAGAAG+TGG | - | chr8.4:6315288-6315307 | None:intergenic | 20.0% |
!!! | CTTACCTTTATATTCTTTTT+TGG | + | chr8.4:6318462-6318481 | MS.gene068863:intron | 20.0% |
!!! | GATACAATAAAACTTTTGAA+TGG | + | chr8.4:6314582-6314601 | MS.gene068863:CDS | 20.0% |
!!! | TATTCTTTTCACAACTTATA+AGG | + | chr8.4:6315444-6315463 | MS.gene068863:intron | 20.0% |
! | AAATCACCAATATATCTTTC+TGG | - | chr8.4:6317823-6317842 | None:intergenic | 25.0% |
! | AAATGAGAATGAACAACTAT+TGG | - | chr8.4:6315259-6315278 | None:intergenic | 25.0% |
! | AACAACCTTTGTGTAAAAAT+AGG | + | chr8.4:6315334-6315353 | MS.gene068863:intron | 25.0% |
! | AAGTTGAAACATGCTAAATA+AGG | - | chr8.4:6316059-6316078 | None:intergenic | 25.0% |
! | AATGAACCAGAAAGATATAT+TGG | + | chr8.4:6317814-6317833 | MS.gene068863:intron | 25.0% |
! | ACAACCTTTGTGTAAAAATA+GGG | + | chr8.4:6315335-6315354 | MS.gene068863:intron | 25.0% |
! | ACATCAGCATATAAAAAAAG+TGG | - | chr8.4:6316752-6316771 | None:intergenic | 25.0% |
! | ATTCGTAATAAACAGCAAAA+AGG | - | chr8.4:6314499-6314518 | None:intergenic | 25.0% |
! | CTAAATGTGAATGTTGATAT+AGG | + | chr8.4:6317965-6317984 | MS.gene068863:intron | 25.0% |
! | GATCTCAATATGTAACTAAT+TGG | + | chr8.4:6315944-6315963 | MS.gene068863:intron | 25.0% |
! | GTAAATATTGAACTTTACTC+AGG | + | chr8.4:6316559-6316578 | MS.gene068863:intron | 25.0% |
! | TAAAACTTCTTCCTATGTAT+AGG | + | chr8.4:6316492-6316511 | MS.gene068863:intron | 25.0% |
! | TTATCCAATAGCTTAATTGA+GGG | - | chr8.4:6315746-6315765 | None:intergenic | 25.0% |
! | TTCATAACATAAATATACCG+TGG | + | chr8.4:6317707-6317726 | MS.gene068863:intron | 25.0% |
! | TTCGTAATAAACAGCAAAAA+GGG | - | chr8.4:6314498-6314517 | None:intergenic | 25.0% |
! | TTGAAGAACTTATAGAAAGT+TGG | + | chr8.4:6316954-6316973 | MS.gene068863:intron | 25.0% |
! | TTTATCCAATAGCTTAATTG+AGG | - | chr8.4:6315747-6315766 | None:intergenic | 25.0% |
!! | AAATGTTTTGCAGATGAAAT+CGG | - | chr8.4:6317898-6317917 | None:intergenic | 25.0% |
!! | ATATGGTTTTCTGATTCTAT+TGG | - | chr8.4:6317600-6317619 | None:intergenic | 25.0% |
!! | ATATGTCTTATTGACTATCA+AGG | + | chr8.4:6314967-6314986 | MS.gene068863:intron | 25.0% |
!! | ATTAATGACTTTTGTGAACT+TGG | + | chr8.4:6317159-6317178 | MS.gene068863:intron | 25.0% |
!! | ATTTCTGCTATTTATTGTGA+AGG | - | chr8.4:6315680-6315699 | None:intergenic | 25.0% |
!! | GTTTTGCTTGGTATATTTAA+TGG | + | chr8.4:6316233-6316252 | MS.gene068863:intron | 25.0% |
!!! | ATGTGTGTTTTGTTATATGT+AGG | + | chr8.4:6315176-6315195 | MS.gene068863:intron | 25.0% |
!!! | ATGTTCTGAAATGTTTATGT+TGG | + | chr8.4:6316211-6316230 | MS.gene068863:intron | 25.0% |
!!! | ATTTTCCTGGTTTGAATTTA+AGG | + | chr8.4:6317213-6317232 | MS.gene068863:intron | 25.0% |
!!! | CAACTTCTTTTTGAAGATAT+GGG | + | chr8.4:6316313-6316332 | MS.gene068863:intron | 25.0% |
!!! | CCAAACTAGTTTGTTTATTA+GGG | + | chr8.4:6316624-6316643 | MS.gene068863:intron | 25.0% |
!!! | TCCAAACTAGTTTGTTTATT+AGG | + | chr8.4:6316623-6316642 | MS.gene068863:intron | 25.0% |
!!! | TTTTGGCGTAATTTTTAAGA+AGG | + | chr8.4:6315532-6315551 | MS.gene068863:intron | 25.0% |
AAAATATGAATCTCAGAAGC+TGG | + | chr8.4:6318308-6318327 | MS.gene068863:intron | 30.0% | |
AAACAGATGATGTACAATCA+TGG | - | chr8.4:6317527-6317546 | None:intergenic | 30.0% | |
AAATATGAATCTCAGAAGCT+GGG | + | chr8.4:6318309-6318328 | MS.gene068863:intron | 30.0% | |
AACATTATTATGGGTCTGTT+TGG | - | chr8.4:6318256-6318275 | None:intergenic | 30.0% | |
ACCTATTACAAATGAAAAGC+AGG | - | chr8.4:6316782-6316801 | None:intergenic | 30.0% | |
ACTAGTGTGTGAATGTTATA+TGG | - | chr8.4:6317617-6317636 | None:intergenic | 30.0% | |
CAATTTCCATCATCTTCAAA+CGG | - | chr8.4:6319084-6319103 | None:intergenic | 30.0% | |
CCCTAATAAACAAACTAGTT+TGG | - | chr8.4:6316627-6316646 | None:intergenic | 30.0% | |
CTTCTCTTTCAACAAGAAAT+TGG | - | chr8.4:6314700-6314719 | None:intergenic | 30.0% | |
CTTTGTGTAAAAATAGGGTA+AGG | + | chr8.4:6315340-6315359 | MS.gene068863:intron | 30.0% | |
GCTGGTAAATATTATCAACT+GGG | - | chr8.4:6318406-6318425 | None:intergenic | 30.0% | |
GTGTATTAATTCCATTTACC+TGG | - | chr8.4:6314761-6314780 | None:intergenic | 30.0% | |
GTTGTTAATAGCAGTTATAG+TGG | - | chr8.4:6318742-6318761 | None:intergenic | 30.0% | |
TAAATGTGCTTTCTATACCA+CGG | - | chr8.4:6317727-6317746 | None:intergenic | 30.0% | |
TATATATACCTCAAATCTCC+TGG | - | chr8.4:6317134-6317153 | None:intergenic | 30.0% | |
TATATGTTCATAACATGCTG+TGG | + | chr8.4:6317644-6317663 | MS.gene068863:intron | 30.0% | |
TATCCAATAGCTTAATTGAG+GGG | - | chr8.4:6315745-6315764 | None:intergenic | 30.0% | |
TCATATAAGTGCTTATGTCT+AGG | - | chr8.4:6318194-6318213 | None:intergenic | 30.0% | |
TCTTTCAACAAGAAATTGGT+CGG | - | chr8.4:6314696-6314715 | None:intergenic | 30.0% | |
TGGTATATTTAATGGCTTCA+AGG | + | chr8.4:6316241-6316260 | MS.gene068863:intron | 30.0% | |
TTGAATGTAACTACATGTGT+TGG | + | chr8.4:6314813-6314832 | MS.gene068863:intron | 30.0% | |
TTGTCAAATATCTGTTACAG+TGG | - | chr8.4:6318616-6318635 | None:intergenic | 30.0% | |
! | AGAAAGCACATTTAGTAGAA+TGG | + | chr8.4:6317733-6317752 | MS.gene068863:intron | 30.0% |
! | ATGCAAAACAATTTGAGATG+CGG | - | chr8.4:6316382-6316401 | None:intergenic | 30.0% |
! | CCACTATAACTGCTATTTAA+CGG | + | chr8.4:6318709-6318728 | MS.gene068863:intron | 30.0% |
! | GAAAGCACATTTAGTAGAAT+GGG | + | chr8.4:6317734-6317753 | MS.gene068863:intron | 30.0% |
! | GAAGTCTGATTCAATACTTT+TGG | + | chr8.4:6315876-6315895 | MS.gene068863:intron | 30.0% |
! | GTTTGTTACCTATGTATATG+AGG | + | chr8.4:6318273-6318292 | MS.gene068863:intron | 30.0% |
! | TATTCTAGCACCCTTTTTAT+TGG | + | chr8.4:6315497-6315516 | MS.gene068863:intron | 30.0% |
! | TCTAGTCGTATATTTTGTGT+AGG | + | chr8.4:6315651-6315670 | MS.gene068863:intron | 30.0% |
! | TGCATTTCACTGATTGTATT+TGG | - | chr8.4:6318428-6318447 | None:intergenic | 30.0% |
! | TTTTAACAAATCAGAAGTGG+AGG | - | chr8.4:6315285-6315304 | None:intergenic | 30.0% |
! | TTTTTACGCCTCATATACAT+AGG | - | chr8.4:6318284-6318303 | None:intergenic | 30.0% |
!! | AAAGAATTTGTTACGAGTAC+AGG | - | chr8.4:6317866-6317885 | None:intergenic | 30.0% |
!! | AATGTTTATGTTGGTTTGCT+TGG | + | chr8.4:6316278-6316297 | MS.gene068863:intron | 30.0% |
!! | GCAACTTCTTTTTGAAGATA+TGG | + | chr8.4:6316312-6316331 | MS.gene068863:intron | 30.0% |
!! | TAATATACAGAGAAGTACTC+AGG | - | chr8.4:6316110-6316129 | None:intergenic | 30.0% |
!! | TTGGTTTGCTTGGTATATAT+TGG | + | chr8.4:6316288-6316307 | MS.gene068863:intron | 30.0% |
!!! | ATGTTTATGTTGGTTTTGCT+TGG | + | chr8.4:6316221-6316240 | MS.gene068863:intron | 30.0% |
!!! | CTTACCCTATTTTTACACAA+AGG | - | chr8.4:6315342-6315361 | None:intergenic | 30.0% |
ACATTTAGTATACTCGAGAG+AGG | - | chr8.4:6317953-6317972 | None:intergenic | 35.0% | |
ACCAAAGAGAACCTATACAT+AGG | - | chr8.4:6316506-6316525 | None:intergenic | 35.0% | |
ACCCTGTATTACTACATGTT+CGG | + | chr8.4:6317790-6317809 | MS.gene068863:intron | 35.0% | |
ACCGAACATGTAGTAATACA+GGG | - | chr8.4:6317794-6317813 | None:intergenic | 35.0% | |
ACGCTGCATTATGATATTTG+TGG | + | chr8.4:6315991-6316010 | MS.gene068863:intron | 35.0% | |
ACTTATTTGAGCTTATCCAC+TGG | + | chr8.4:6318002-6318021 | MS.gene068863:intron | 35.0% | |
AGATGATGTACAATCATGGA+TGG | - | chr8.4:6317523-6317542 | None:intergenic | 35.0% | |
ATATTGAGCAGCTAGTATGT+TGG | - | chr8.4:6317684-6317703 | None:intergenic | 35.0% | |
ATCCAATAGCTTAATTGAGG+GGG | - | chr8.4:6315744-6315763 | None:intergenic | 35.0% | |
ATGTTGATATAGGGTCTGTT+TGG | + | chr8.4:6317975-6317994 | MS.gene068863:intron | 35.0% | |
CATTTAGTATACTCGAGAGA+GGG | - | chr8.4:6317952-6317971 | None:intergenic | 35.0% | |
CCGTTAAATAGCAGTTATAG+TGG | - | chr8.4:6318712-6318731 | None:intergenic | 35.0% | |
CGTATACAAATAGCGTATCA+CGG | + | chr8.4:6318639-6318658 | MS.gene068863:intron | 35.0% | |
GACAAAAAAGTAACACGAGA+TGG | - | chr8.4:6316875-6316894 | None:intergenic | 35.0% | |
GAGAATGAGTGGTAAGAAAT+TGG | - | chr8.4:6318835-6318854 | None:intergenic | 35.0% | |
GATGATGTACAATCATGGAT+GGG | - | chr8.4:6317522-6317541 | None:intergenic | 35.0% | |
GGATATGTCTTCATATATGC+CGG | - | chr8.4:6316143-6316162 | None:intergenic | 35.0% | |
GGCTGGTAAATATTATCAAC+TGG | - | chr8.4:6318407-6318426 | None:intergenic | 35.0% | |
GGTATTGTAGACTCAAACTT+AGG | + | chr8.4:6316580-6316599 | MS.gene068863:intron | 35.0% | |
TAAGAAGGAACATGATCGAT+TGG | + | chr8.4:6315547-6315566 | MS.gene068863:intron | 35.0% | |
TACCGAACATGTAGTAATAC+AGG | - | chr8.4:6317795-6317814 | None:intergenic | 35.0% | |
TCAAAAACGACATGTGTGAT+TGG | - | chr8.4:6314398-6314417 | None:intergenic | 35.0% | |
TCCAACAATGAGTCAAAACT+TGG | - | chr8.4:6319032-6319051 | None:intergenic | 35.0% | |
TCCTATGTATAGGTTCTCTT+TGG | + | chr8.4:6316502-6316521 | MS.gene068863:intron | 35.0% | |
TGATCACAAACTCACAAAGT+TGG | - | chr8.4:6317268-6317287 | None:intergenic | 35.0% | |
TGCAGATAAATTGAAAGCTC+TGG | + | chr8.4:6314893-6314912 | MS.gene068863:intron | 35.0% | |
TTAACAACACAGTTTGAGCT+AGG | + | chr8.4:6318754-6318773 | MS.gene068863:intron | 35.0% | |
TTCAAAAATTCCACGCAGAA+AGG | - | chr8.4:6316348-6316367 | None:intergenic | 35.0% | |
TTGAAAGAGAAGATATGCTG+CGG | + | chr8.4:6314708-6314727 | MS.gene068863:CDS | 35.0% | |
! | AAGGTTTTTGTTGAAGAGAC+TGG | + | chr8.4:6314650-6314669 | MS.gene068863:CDS | 35.0% |
! | ACGATACATTGATGATCAAC+AGG | + | chr8.4:6317308-6317327 | MS.gene068863:intron | 35.0% |
! | AGAACACAAATGCATTTTCC+TGG | + | chr8.4:6317200-6317219 | MS.gene068863:intron | 35.0% |
! | ATGATCTGCTGTTTGTAATG+GGG | + | chr8.4:6316424-6316443 | MS.gene068863:intron | 35.0% |
! | CACATACTAAAGTACTTGCA+TGG | - | chr8.4:6316695-6316714 | None:intergenic | 35.0% |
! | CGATACATTGATGATCAACA+GGG | + | chr8.4:6317309-6317328 | MS.gene068863:intron | 35.0% |
! | CTGTAATTCTTCTTTTGCTC+TGG | + | chr8.4:6315902-6315921 | MS.gene068863:intron | 35.0% |
! | GATGATCTGCTGTTTGTAAT+GGG | + | chr8.4:6316423-6316442 | MS.gene068863:intron | 35.0% |
! | GTCAGGTTTTCAAAATGTGT+CGG | - | chr8.4:6314848-6314867 | None:intergenic | 35.0% |
! | TGATGATCTGCTGTTTGTAA+TGG | + | chr8.4:6316422-6316441 | MS.gene068863:intron | 35.0% |
! | TTGTTTGTTACACGTGTTGT+AGG | + | chr8.4:6318950-6318969 | MS.gene068863:intron | 35.0% |
! | TTTACACAAAGGTTGTTTCC+AGG | - | chr8.4:6315331-6315350 | None:intergenic | 35.0% |
! | TTTCACTGATTGTATTTGGC+TGG | - | chr8.4:6318424-6318443 | None:intergenic | 35.0% |
!! | AAGTTTTAATCTTGCGCACT+TGG | - | chr8.4:6316480-6316499 | None:intergenic | 35.0% |
!! | AGCTCTAAGGTTTCAATTTG+AGG | - | chr8.4:6316019-6316038 | None:intergenic | 35.0% |
!! | CTTATTTTCATAAGCTCTCC+AGG | + | chr8.4:6318095-6318114 | MS.gene068863:intron | 35.0% |
!! | GCCTGCTTTTCATTTGTAAT+AGG | + | chr8.4:6316778-6316797 | MS.gene068863:intron | 35.0% |
!! | GTTTGCCTTGTTTAACTTCA+GGG | - | chr8.4:6317084-6317103 | None:intergenic | 35.0% |
!!! | ACCAAGTTTTGACTCATTGT+TGG | + | chr8.4:6319028-6319047 | MS.gene068863:CDS | 35.0% |
!!! | ATGTTCATGTTTTCAAGTCC+TGG | + | chr8.4:6315310-6315329 | MS.gene068863:intron | 35.0% |
AACACTTAGCGCATAGAAGA+TGG | - | chr8.4:6315082-6315101 | None:intergenic | 40.0% | |
AACTGAAAACGCAAAGACAC+GGG | + | chr8.4:6317017-6317036 | MS.gene068863:CDS | 40.0% | |
AAGCACATGCAAGACTGTTT+GGG | + | chr8.4:6318028-6318047 | MS.gene068863:intron | 40.0% | |
ACAGCTACATAACCGTTTGA+TGG | - | chr8.4:6315600-6315619 | None:intergenic | 40.0% | |
ACTACTGATAACCGCAACTA+AGG | + | chr8.4:6317572-6317591 | MS.gene068863:intron | 40.0% | |
AGAATATTACTCGGATCCAC+TGG | - | chr8.4:6317339-6317358 | None:intergenic | 40.0% | |
AGACTTCAAAGCAAGCTCTA+AGG | - | chr8.4:6316032-6316051 | None:intergenic | 40.0% | |
AGTGCTACATCTATCGTTTC+AGG | + | chr8.4:6317767-6317786 | MS.gene068863:intron | 40.0% | |
AGTTGCGGTTATCAGTAGTT+AGG | - | chr8.4:6317571-6317590 | None:intergenic | 40.0% | |
ATCATAACCCAAGTGTTCTG+AGG | - | chr8.4:6318798-6318817 | None:intergenic | 40.0% | |
CAAATTCCACTACGCTATAG+CGG | + | chr8.4:6318679-6318698 | MS.gene068863:intron | 40.0% | |
CATCCATGTTCTCCATCAAA+CGG | + | chr8.4:6315585-6315604 | MS.gene068863:intron | 40.0% | |
CGTACAATACACCAAATGGT+GGG | + | chr8.4:6315366-6315385 | MS.gene068863:intron | 40.0% | |
CTCAAGCATCTACATGCAAA+AGG | + | chr8.4:6316814-6316833 | MS.gene068863:CDS | 40.0% | |
CTGATGCATCATGTTGTTCT+TGG | + | chr8.4:6317052-6317071 | MS.gene068863:CDS | 40.0% | |
GAACTGAAAACGCAAAGACA+CGG | + | chr8.4:6317016-6317035 | MS.gene068863:CDS | 40.0% | |
GATGACCCTGAAGTTAAACA+AGG | + | chr8.4:6317076-6317095 | MS.gene068863:CDS | 40.0% | |
GCAAGAAATACATCTGGTGA+TGG | - | chr8.4:6317106-6317125 | None:intergenic | 40.0% | |
GCTGTTCTCAAAAACTAACC+TGG | - | chr8.4:6318116-6318135 | None:intergenic | 40.0% | |
GCTTGTCACATTGAAAAGAC+AGG | + | chr8.4:6316657-6316676 | MS.gene068863:intron | 40.0% | |
GTTGCGTACAATACACCAAA+TGG | + | chr8.4:6315362-6315381 | MS.gene068863:intron | 40.0% | |
GTTGTTATGTTCCTGATCCA+AGG | + | chr8.4:6318977-6318996 | MS.gene068863:CDS | 40.0% | |
TAACCGTTTGATGGAGAACA+TGG | - | chr8.4:6315591-6315610 | None:intergenic | 40.0% | |
TAAGCACATGCAAGACTGTT+TGG | + | chr8.4:6318027-6318046 | MS.gene068863:intron | 40.0% | |
TCCAATAGCTTAATTGAGGG+GGG | - | chr8.4:6315743-6315762 | None:intergenic | 40.0% | |
TGAAAAGATTTGTCCAGCCT+TGG | - | chr8.4:6318997-6319016 | None:intergenic | 40.0% | |
TGAAATTTACCCAGTTGCCA+CGG | - | chr8.4:6316851-6316870 | None:intergenic | 40.0% | |
TTACCTCCGTTTGAAGATGA+TGG | + | chr8.4:6319075-6319094 | MS.gene068863:CDS | 40.0% | |
TTGATCAAGGTGAGAATGAG+TGG | - | chr8.4:6318846-6318865 | None:intergenic | 40.0% | |
TTTCCATCATCTTCAAACGG+AGG | - | chr8.4:6319081-6319100 | None:intergenic | 40.0% | |
! | AACTTTTGAATGGCCTCTCA+AGG | + | chr8.4:6314592-6314611 | MS.gene068863:CDS | 40.0% |
! | AAGGCTGGACAAATCTTTTC+AGG | + | chr8.4:6318996-6319015 | MS.gene068863:CDS | 40.0% |
! | CCAAAGTGTTCAACTCAACA+AGG | - | chr8.4:6315789-6315808 | None:intergenic | 40.0% |
! | CCTGGTTTGAATTTAAGGCT+GGG | + | chr8.4:6317218-6317237 | MS.gene068863:intron | 40.0% |
! | CTTTTGCTCTGGTGAAATCT+TGG | + | chr8.4:6315913-6315932 | MS.gene068863:intron | 40.0% |
! | TACATTGATGATCAACAGGG+TGG | + | chr8.4:6317312-6317331 | MS.gene068863:intron | 40.0% |
! | TCCTGGTTTGAATTTAAGGC+TGG | + | chr8.4:6317217-6317236 | MS.gene068863:intron | 40.0% |
! | TTCTATTGGTGCCTTAGTTG+CGG | - | chr8.4:6317586-6317605 | None:intergenic | 40.0% |
! | TTTTCAGTATGCCTTCTGCA+GGG | - | chr8.4:6315149-6315168 | None:intergenic | 40.0% |
!! | AGAATAAAAAAAGGGCACCC+CGG | - | chr8.4:6315430-6315449 | None:intergenic | 40.0% |
!! | CCTTGTTGAGTTGAACACTT+TGG | + | chr8.4:6315786-6315805 | MS.gene068863:intron | 40.0% |
!! | GGTTTGCCTTGTTTAACTTC+AGG | - | chr8.4:6317085-6317104 | None:intergenic | 40.0% |
!! | TATACAGAGAAGTACTCAGG+TGG | - | chr8.4:6316107-6316126 | None:intergenic | 40.0% |
!! | TGATTGGTTTCTGACATCGA+CGG | - | chr8.4:6314382-6314401 | None:intergenic | 40.0% |
!!! | CACACATGTCGTTTTTGACA+TGG | + | chr8.4:6314400-6314419 | MS.gene068863:CDS | 40.0% |
!!! | CATGTCGTTTTTGACATGGA+CGG | + | chr8.4:6314404-6314423 | MS.gene068863:CDS | 40.0% |
AAAAGGAGTTCCAATTGCCG+TGG | + | chr8.4:6316831-6316850 | MS.gene068863:CDS | 45.0% | |
ACTGAAAACGCAAAGACACG+GGG | + | chr8.4:6317018-6317037 | MS.gene068863:CDS | 45.0% | |
ACTTGCGATCGAAGTTTGTC+AGG | - | chr8.4:6314865-6314884 | None:intergenic | 45.0% | |
AGCGTATCACGGAACAATAG+CGG | + | chr8.4:6318650-6318669 | MS.gene068863:intron | 45.0% | |
AGGTAAACGTCCACTCACTA+GGG | - | chr8.4:6319061-6319080 | None:intergenic | 45.0% | |
ATGTATTTCTTGCTGCAGCC+AGG | + | chr8.4:6317113-6317132 | MS.gene068863:CDS | 45.0% | |
CAAACTTCGATCGCAAGTGT+CGG | + | chr8.4:6314867-6314886 | MS.gene068863:intron | 45.0% | |
CCCAGCCTTAAATTCAAACC+AGG | - | chr8.4:6317221-6317240 | None:intergenic | 45.0% | |
CCTCTCAAGGCAAAGATGAT+GGG | + | chr8.4:6314605-6314624 | MS.gene068863:CDS | 45.0% | |
CTTGCATGTGCTTATACCAG+TGG | - | chr8.4:6318021-6318040 | None:intergenic | 45.0% | |
GAAAGCGATTGAAGCTGCTA+AGG | + | chr8.4:6314631-6314650 | MS.gene068863:CDS | 45.0% | |
GCGTACAATACACCAAATGG+TGG | + | chr8.4:6315365-6315384 | MS.gene068863:intron | 45.0% | |
GCTGCAGCAAGAAATACATC+TGG | - | chr8.4:6317112-6317131 | None:intergenic | 45.0% | |
GTGTAGAATTCCTTTCTGCG+TGG | + | chr8.4:6316335-6316354 | MS.gene068863:intron | 45.0% | |
TCCCCCCTCAATTAAGCTAT+TGG | + | chr8.4:6315739-6315758 | MS.gene068863:intron | 45.0% | |
TGGATTTCAACCCTAGTGAG+TGG | + | chr8.4:6319048-6319067 | MS.gene068863:CDS | 45.0% | |
TGTGTTGCCTCAGAACACTT+GGG | + | chr8.4:6318788-6318807 | MS.gene068863:intron | 45.0% | |
TGTTACACGTGTTGTAGGTC+TGG | + | chr8.4:6318955-6318974 | MS.gene068863:intron | 45.0% | |
TTATGTTCCTGATCCAAGGC+TGG | + | chr8.4:6318981-6319000 | MS.gene068863:CDS | 45.0% | |
! | AATGTCGCTTGTGAGAACTG+TGG | - | chr8.4:6316994-6317013 | None:intergenic | 45.0% |
! | ATGTCGCTTGTGAGAACTGT+GGG | - | chr8.4:6316993-6317012 | None:intergenic | 45.0% |
! | CTTTTCAGTATGCCTTCTGC+AGG | - | chr8.4:6315150-6315169 | None:intergenic | 45.0% |
!! | GTTTTTGAAGATGCACCCTC+TGG | + | chr8.4:6317360-6317379 | MS.gene068863:CDS | 45.0% |
!!! | TTTTTTTTTTTTTTTTTACA+TGG | + | chr8.4:6314459-6314478 | MS.gene068863:intron | 5.0% |
ACTAAAGCTTCCGCATACGC+AGG | - | chr8.4:6315404-6315423 | None:intergenic | 50.0% | |
CCCATCATCTTTGCCTTGAG+AGG | - | chr8.4:6314608-6314627 | None:intergenic | 50.0% | |
GAGGTAAACGTCCACTCACT+AGG | - | chr8.4:6319062-6319081 | None:intergenic | 50.0% | |
GATTTGTCCAGCCTTGGATC+AGG | - | chr8.4:6318991-6319010 | None:intergenic | 50.0% | |
GCCTCTCAAGGCAAAGATGA+TGG | + | chr8.4:6314604-6314623 | MS.gene068863:CDS | 50.0% | |
GCTATACCGCTATAGCGTAG+TGG | - | chr8.4:6318688-6318707 | None:intergenic | 50.0% | |
GCTATAGCACTACTGCGTAG+TGG | - | chr8.4:6318592-6318611 | None:intergenic | 50.0% | |
GGGCTGTTGAATCCATTCCA+CGG | + | chr8.4:6318329-6318348 | MS.gene068863:intron | 50.0% | |
GTGTGTTGCCTCAGAACACT+TGG | + | chr8.4:6318787-6318806 | MS.gene068863:intron | 50.0% | |
GTTCGTGCAGCTAAGAATGC+TGG | + | chr8.4:6317384-6317403 | MS.gene068863:CDS | 50.0% | |
TGAGGGGGGAAATCAATGAC+TGG | - | chr8.4:6315729-6315748 | None:intergenic | 50.0% | |
TGTCTTTGTGACCCTGCAGA+AGG | + | chr8.4:6315135-6315154 | MS.gene068863:intron | 50.0% | |
TTAGCTGCACGAACTCCAGA+GGG | - | chr8.4:6317378-6317397 | None:intergenic | 50.0% | |
TTCCAATTGCCGTGGCAACT+GGG | + | chr8.4:6316839-6316858 | MS.gene068863:CDS | 50.0% | |
TTGGTTTCTGACATCGACGG+AGG | - | chr8.4:6314379-6314398 | None:intergenic | 50.0% | |
TTTCTGACATCGACGGAGGA+GGG | - | chr8.4:6314375-6314394 | None:intergenic | 50.0% | |
! | ATGCGGAAGCTTTAGTGCAC+CGG | + | chr8.4:6315408-6315427 | MS.gene068863:intron | 50.0% |
CTTAGCTGCACGAACTCCAG+AGG | - | chr8.4:6317379-6317398 | None:intergenic | 55.0% | |
GACATGGACGGTCTCTTGCT+AGG | + | chr8.4:6314416-6314435 | MS.gene068863:CDS | 55.0% | |
GCGAGCTCATGCCAGGTAAA+TGG | + | chr8.4:6314747-6314766 | MS.gene068863:intron | 55.0% | |
GTTCCAATTGCCGTGGCAAC+TGG | + | chr8.4:6316838-6316857 | MS.gene068863:CDS | 55.0% | |
GTTTCTGACATCGACGGAGG+AGG | - | chr8.4:6314376-6314395 | None:intergenic | 55.0% | |
TACCCAGTTGCCACGGCAAT+TGG | - | chr8.4:6316844-6316863 | None:intergenic | 55.0% | |
TGATCAACAGGGTGGACCAG+TGG | + | chr8.4:6317320-6317339 | MS.gene068863:intron | 55.0% | |
TGCTGCAGCCAGGAGATTTG+AGG | + | chr8.4:6317123-6317142 | MS.gene068863:CDS | 55.0% | |
! | TGCGGAAGCTTTAGTGCACC+GGG | + | chr8.4:6315409-6315428 | MS.gene068863:intron | 55.0% |
AGCTTCCGCATACGCAGGTC+CGG | - | chr8.4:6315399-6315418 | None:intergenic | 60.0% | |
CCAACAAGCGAGCTCATGCC+AGG | + | chr8.4:6314740-6314759 | MS.gene068863:CDS | 60.0% | |
CCTGGCATGAGCTCGCTTGT+TGG | - | chr8.4:6314743-6314762 | None:intergenic | 60.0% | |
GACATCGACGGAGGAGGGAT+TGG | - | chr8.4:6314370-6314389 | None:intergenic | 60.0% | |
! | CCAAATGGTGGGACCCCTTC+CGG | + | chr8.4:6315377-6315396 | MS.gene068863:intron | 60.0% |
! | GCGGAAGCTTTAGTGCACCG+GGG | + | chr8.4:6315410-6315429 | MS.gene068863:intron | 60.0% |
CCCTTCCGGACCTGCGTATG+CGG | + | chr8.4:6315391-6315410 | MS.gene068863:intron | 65.0% | |
CCGCATACGCAGGTCCGGAA+GGG | - | chr8.4:6315394-6315413 | None:intergenic | 65.0% | |
CCGGAAGGGGTCCCACCATT+TGG | - | chr8.4:6315380-6315399 | None:intergenic | 65.0% | |
CGCATACGCAGGTCCGGAAG+GGG | - | chr8.4:6315393-6315412 | None:intergenic | 65.0% | |
TCCGCATACGCAGGTCCGGA+AGG | - | chr8.4:6315395-6315414 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 6314356 | 6319104 | 6314356 | ID=MS.gene068863 |
chr8.4 | mRNA | 6314356 | 6319104 | 6314356 | ID=MS.gene068863.t1;Parent=MS.gene068863 |
chr8.4 | exon | 6314356 | 6314437 | 6314356 | ID=MS.gene068863.t1.exon1;Parent=MS.gene068863.t1 |
chr8.4 | CDS | 6314356 | 6314437 | 6314356 | ID=cds.MS.gene068863.t1;Parent=MS.gene068863.t1 |
chr8.4 | exon | 6314537 | 6314761 | 6314537 | ID=MS.gene068863.t1.exon2;Parent=MS.gene068863.t1 |
chr8.4 | CDS | 6314537 | 6314761 | 6314537 | ID=cds.MS.gene068863.t1;Parent=MS.gene068863.t1 |
chr8.4 | exon | 6316800 | 6316860 | 6316800 | ID=MS.gene068863.t1.exon3;Parent=MS.gene068863.t1 |
chr8.4 | CDS | 6316800 | 6316860 | 6316800 | ID=cds.MS.gene068863.t1;Parent=MS.gene068863.t1 |
chr8.4 | exon | 6316997 | 6317144 | 6316997 | ID=MS.gene068863.t1.exon4;Parent=MS.gene068863.t1 |
chr8.4 | CDS | 6316997 | 6317144 | 6316997 | ID=cds.MS.gene068863.t1;Parent=MS.gene068863.t1 |
chr8.4 | exon | 6317330 | 6317409 | 6317330 | ID=MS.gene068863.t1.exon5;Parent=MS.gene068863.t1 |
chr8.4 | CDS | 6317330 | 6317409 | 6317330 | ID=cds.MS.gene068863.t1;Parent=MS.gene068863.t1 |
chr8.4 | exon | 6318972 | 6319104 | 6318972 | ID=MS.gene068863.t1.exon6;Parent=MS.gene068863.t1 |
chr8.4 | CDS | 6318972 | 6319104 | 6318972 | ID=cds.MS.gene068863.t1;Parent=MS.gene068863.t1 |
Gene Sequence |
Protein sequence |