Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06892.t1 | XP_013461435.1 | 98.3 | 60 | 1 | 0 | 55 | 114 | 1 | 60 | 1.70E-26 | 129 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06892.t1 | A0A072VBC0 | 98.3 | 60 | 1 | 0 | 55 | 114 | 1 | 60 | 1.2e-26 | 129.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049680 | MS.gene06892 | 0.811515 | 6.74E-51 | -1.69E-46 |
| MS.gene05029 | MS.gene06892 | 0.844609 | 6.80E-59 | -1.69E-46 |
| MS.gene050955 | MS.gene06892 | 0.813976 | 1.95E-51 | -1.69E-46 |
| MS.gene051033 | MS.gene06892 | -0.824282 | 8.78E-54 | -1.69E-46 |
| MS.gene057130 | MS.gene06892 | 0.982075 | 3.61E-154 | -1.69E-46 |
| MS.gene06118 | MS.gene06892 | 0.855068 | 8.08E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06892.t1 | MTR_3g491900 | 96.429 | 84 | 3 | 0 | 55 | 138 | 1 | 84 | 3.70e-56 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGGCTTTCTTTGCATCTT+TGG | 0.266381 | 3.2:+77260490 | MS.gene06892:CDS |
| TTACCCAGCCTGGCCATAAA+AGG | 0.310359 | 3.2:-77258007 | None:intergenic |
| GGAGGAGGAGGCTGTGGTTG+AGG | 0.362552 | 3.2:-77260614 | None:intergenic |
| TGAATGGTTCCTTGCATACT+AGG | 0.363015 | 3.2:+77257959 | MS.gene06892:CDS |
| AATGGTGAAGTTACTTTGAA+TGG | 0.376212 | 3.2:+77257943 | MS.gene06892:CDS |
| TACCCTTCACCCTCTGGTCC+TGG | 0.409818 | 3.2:-77260425 | None:intergenic |
| TTGCATACTAGGTTCCTTAT+CGG | 0.413656 | 3.2:+77257970 | MS.gene06892:CDS |
| CTCTGGTCCTGGTCTCTCCA+TGG | 0.416814 | 3.2:-77260414 | None:intergenic |
| CAGAGGGTGAAGGGTATTGC+TGG | 0.426530 | 3.2:+77260432 | MS.gene06892:CDS |
| CAGCAATACCCTTCACCCTC+TGG | 0.445917 | 3.2:-77260431 | None:intergenic |
| ACAAATAAAACCTTCCGATA+AGG | 0.463426 | 3.2:-77257984 | None:intergenic |
| AGGATGAGAAGAGGATCGTC+AGG | 0.481227 | 3.2:-77260551 | None:intergenic |
| TCGGAAGGAGGAGGAGGCTG+TGG | 0.506854 | 3.2:-77260620 | None:intergenic |
| CTTTCTTTGCATCTTTGGAA+CGG | 0.508553 | 3.2:+77260495 | MS.gene06892:CDS |
| ACGGAATGGCGAGCTGGATA+GGG | 0.508733 | 3.2:+77260456 | MS.gene06892:CDS |
| AACGGAATGGCGAGCTGGAT+AGG | 0.517911 | 3.2:+77260455 | MS.gene06892:CDS |
| AAGAGGATCGTCAGGATCAT+CGG | 0.521870 | 3.2:-77260543 | None:intergenic |
| TTGTTGTCGGAAGGAGGAGG+AGG | 0.522839 | 3.2:-77260626 | None:intergenic |
| ATCGTCAGGATCATCGGAGG+TGG | 0.525533 | 3.2:-77260537 | None:intergenic |
| GACCAGGACCAGAGGGTGAA+GGG | 0.537012 | 3.2:+77260423 | MS.gene06892:CDS |
| AGAAGCAAGAGAATCATCCA+TGG | 0.541592 | 3.2:+77260397 | MS.gene06892:CDS |
| AGATTCATCGGAGAATCTGT+TGG | 0.545815 | 3.2:-77260585 | None:intergenic |
| AGACCAGGACCAGAGGGTGA+AGG | 0.547532 | 3.2:+77260422 | MS.gene06892:CDS |
| ATGAACTAACTTACCCAGCC+TGG | 0.558856 | 3.2:-77258017 | None:intergenic |
| GGAGAATCTGTTGGAATCAG+AGG | 0.559994 | 3.2:-77260576 | None:intergenic |
| GCTGGAACGGAATGGCGAGC+TGG | 0.561719 | 3.2:+77260450 | MS.gene06892:CDS |
| ATACTAGGTTCCTTATCGGA+AGG | 0.573593 | 3.2:+77257974 | MS.gene06892:CDS |
| GGTGAAGGGTATTGCTGGAA+CGG | 0.573724 | 3.2:+77260437 | MS.gene06892:CDS |
| GAATCATCCATGGAGAGACC+AGG | 0.575340 | 3.2:+77260407 | MS.gene06892:CDS |
| ATCTGTTGGAATCAGAGGGA+AGG | 0.586267 | 3.2:-77260571 | None:intergenic |
| ATCTTAACAATACAAATGAA+AGG | 0.597273 | 3.2:+77259274 | MS.gene06892:CDS |
| TTGAGGATGAGAAGATTCAT+CGG | 0.597564 | 3.2:-77260597 | None:intergenic |
| ATGGAGAGACCAGGACCAGA+GGG | 0.603001 | 3.2:+77260416 | MS.gene06892:CDS |
| TCAGAGGGAAGGATGAGAAG+AGG | 0.603416 | 3.2:-77260560 | None:intergenic |
| GATAAGGAACCTAGTATGCA+AGG | 0.606331 | 3.2:-77257968 | None:intergenic |
| AGGGTATTGCTGGAACGGAA+TGG | 0.614647 | 3.2:+77260442 | MS.gene06892:CDS |
| GAGAATCTGTTGGAATCAGA+GGG | 0.616835 | 3.2:-77260575 | None:intergenic |
| GATAGGGATGAATCTTGCAA+CGG | 0.636350 | 3.2:+77260472 | MS.gene06892:CDS |
| CTACCCTAAAACTCAAACAG+CGG | 0.639714 | 3.2:-77260660 | None:intergenic |
| CATGGAGAGACCAGGACCAG+AGG | 0.641019 | 3.2:+77260415 | MS.gene06892:CDS |
| ATCTACACACATCAAGACAA+TGG | 0.649660 | 3.2:+77257925 | MS.gene06892:CDS |
| AGGATCGTCAGGATCATCGG+AGG | 0.716513 | 3.2:-77260540 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAAGAAAAGATAA+AGG | + | chr3.2:77260156-77260175 | MS.gene06892:intron | 10.0% |
| !! | AAATAAAAAGAAAAGATAAA+GGG | + | chr3.2:77260157-77260176 | MS.gene06892:intron | 10.0% |
| !! | ATTATTAACGTTAATTCTAA+AGG | - | chr3.2:77258297-77258316 | None:intergenic | 15.0% |
| !! | TAAGAAAAGAAAAAAAAAAC+AGG | - | chr3.2:77258046-77258065 | None:intergenic | 15.0% |
| !! | TTTATGTATTTATTACGATT+TGG | - | chr3.2:77259864-77259883 | None:intergenic | 15.0% |
| !!! | TTGTTCTTAAACAATATTTT+CGG | - | chr3.2:77260238-77260257 | None:intergenic | 15.0% |
| !!! | TTTGATTTTTATGAATGTAT+TGG | + | chr3.2:77258900-77258919 | MS.gene06892:intron | 15.0% |
| !! | ATCTTAACAATACAAATGAA+AGG | + | chr3.2:77259274-77259293 | MS.gene06892:CDS | 20.0% |
| !! | GAATTAACTAATTCTTTATC+GGG | - | chr3.2:77260324-77260343 | None:intergenic | 20.0% |
| !! | GGAATTAACTAATTCTTTAT+CGG | - | chr3.2:77260325-77260344 | None:intergenic | 20.0% |
| !!! | ACTTTCATGTATATTTTTTG+TGG | + | chr3.2:77259484-77259503 | MS.gene06892:intron | 20.0% |
| !!! | CAATTTTGTTTTAGCATTTA+TGG | + | chr3.2:77259151-77259170 | MS.gene06892:intron | 20.0% |
| !!! | TAAAATCATTTTTTGTCCAT+AGG | - | chr3.2:77259399-77259418 | None:intergenic | 20.0% |
| !!! | TCTGTTTTATTAAACAAACT+AGG | - | chr3.2:77259544-77259563 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTCTTATGTTCT+TGG | + | chr3.2:77258052-77258071 | MS.gene06892:intron | 20.0% |
| ! | AAAAAGAAAAGATAAAGGGT+AGG | + | chr3.2:77260161-77260180 | MS.gene06892:intron | 25.0% |
| ! | AAGAGAATGAAATTGTGAAA+TGG | - | chr3.2:77260346-77260365 | None:intergenic | 25.0% |
| ! | ACATTATACAAGAAATGTTG+AGG | + | chr3.2:77258662-77258681 | MS.gene06892:intron | 25.0% |
| ! | ATACATGTACTCATAATAAG+GGG | + | chr3.2:77260117-77260136 | MS.gene06892:intron | 25.0% |
| ! | ATATGTATTGTGGGTATTTA+AGG | + | chr3.2:77258618-77258637 | MS.gene06892:intron | 25.0% |
| ! | CATACATGTACTCATAATAA+GGG | + | chr3.2:77260116-77260135 | MS.gene06892:intron | 25.0% |
| ! | CTAATGAGAATATGTATTGT+GGG | + | chr3.2:77258609-77258628 | MS.gene06892:intron | 25.0% |
| ! | GAATTGATTACAGTGAAATA+TGG | - | chr3.2:77259775-77259794 | None:intergenic | 25.0% |
| ! | GATTACTATGCATACTATTA+TGG | + | chr3.2:77258231-77258250 | MS.gene06892:intron | 25.0% |
| ! | TATCAAACTGTAGTTGTATT+TGG | - | chr3.2:77258189-77258208 | None:intergenic | 25.0% |
| ! | TCTAATGAGAATATGTATTG+TGG | + | chr3.2:77258608-77258627 | MS.gene06892:intron | 25.0% |
| ! | TTCAATAGTTCAACCAAAAT+TGG | - | chr3.2:77259094-77259113 | None:intergenic | 25.0% |
| ! | TTGAGAGAAATCAACAATTT+GGG | - | chr3.2:77259694-77259713 | None:intergenic | 25.0% |
| ! | TTTATTATCATGTTCACCAA+GGG | - | chr3.2:77258561-77258580 | None:intergenic | 25.0% |
| ! | TTTGAGAGAAATCAACAATT+TGG | - | chr3.2:77259695-77259714 | None:intergenic | 25.0% |
| !! | AAATTTGTTTACCACATGTA+TGG | + | chr3.2:77260066-77260085 | MS.gene06892:intron | 25.0% |
| !! | CAATTTCATTATGTCTGTTT+TGG | - | chr3.2:77260275-77260294 | None:intergenic | 25.0% |
| !! | TAAACAATATTTTCGGATCA+TGG | - | chr3.2:77260231-77260250 | None:intergenic | 25.0% |
| !! | TTTTATTATCATGTTCACCA+AGG | - | chr3.2:77258562-77258581 | None:intergenic | 25.0% |
| !!! | AGGTTTTATTTGTCCTTTTA+TGG | + | chr3.2:77257994-77258013 | MS.gene06892:CDS | 25.0% |
| !!! | TGGTATTTTATTTCGATCAT+TGG | + | chr3.2:77259353-77259372 | MS.gene06892:intron | 25.0% |
| !!! | TTTCAAGTTATATGTCTCTA+GGG | + | chr3.2:77259040-77259059 | MS.gene06892:intron | 25.0% |
| !!! | TTTTCAAGTTATATGTCTCT+AGG | + | chr3.2:77259039-77259058 | MS.gene06892:intron | 25.0% |
| AAAACATTTCTCACCAAGTT+TGG | - | chr3.2:77258868-77258887 | None:intergenic | 30.0% | |
| AAAAGATAAAGGGTAGGAAT+GGG | + | chr3.2:77260167-77260186 | MS.gene06892:intron | 30.0% | |
| AAATACAGATGAAAGAGGAT+GGG | + | chr3.2:77259959-77259978 | MS.gene06892:intron | 30.0% | |
| AATGGGAATTGGAAATTAGA+TGG | + | chr3.2:77260184-77260203 | MS.gene06892:intron | 30.0% | |
| AATTCTTTATCGGGAAAACT+GGG | - | chr3.2:77260315-77260334 | None:intergenic | 30.0% | |
| ACAAATAAAACCTTCCGATA+AGG | - | chr3.2:77257987-77258006 | None:intergenic | 30.0% | |
| ACCCAAATCTCAATTTATCT+TGG | + | chr3.2:77259748-77259767 | MS.gene06892:intron | 30.0% | |
| AGAAATGTTGAGGTAATTTG+AGG | + | chr3.2:77258672-77258691 | MS.gene06892:intron | 30.0% | |
| AGAACTATTGGGTAATTGAA+TGG | + | chr3.2:77258717-77258736 | MS.gene06892:intron | 30.0% | |
| CCCAAATCTCAATTTATCTT+GGG | + | chr3.2:77259749-77259768 | MS.gene06892:intron | 30.0% | |
| CCCAAGATAAATTGAGATTT+GGG | - | chr3.2:77259752-77259771 | None:intergenic | 30.0% | |
| GCATACATGTACTCATAATA+AGG | + | chr3.2:77260115-77260134 | MS.gene06892:intron | 30.0% | |
| GTTATTACAGCTGAAATCTT+TGG | + | chr3.2:77258430-77258449 | MS.gene06892:intron | 30.0% | |
| TAAGACTACAAGAAAGTGAT+AGG | - | chr3.2:77259718-77259737 | None:intergenic | 30.0% | |
| TAATTCTTTATCGGGAAAAC+TGG | - | chr3.2:77260316-77260335 | None:intergenic | 30.0% | |
| TACTATGCATACTATTATGG+CGG | + | chr3.2:77258234-77258253 | MS.gene06892:intron | 30.0% | |
| TGAGGATTGGATAAGATAAT+TGG | + | chr3.2:77258690-77258709 | MS.gene06892:intron | 30.0% | |
| TGTCAGTAATCAGTATCTAT+AGG | - | chr3.2:77258483-77258502 | None:intergenic | 30.0% | |
| ! | AACTTCTTTTCATAACTGTG+TGG | + | chr3.2:77258502-77258521 | MS.gene06892:intron | 30.0% |
| ! | AATGGTGAAGTTACTTTGAA+TGG | + | chr3.2:77257943-77257962 | MS.gene06892:CDS | 30.0% |
| ! | CAACTCTTCTAGAAGAATTA+AGG | + | chr3.2:77258996-77259015 | MS.gene06892:intron | 30.0% |
| ! | CATATTTTGTAACACATGGA+TGG | + | chr3.2:77258392-77258411 | MS.gene06892:intron | 30.0% |
| ! | GATTTTACAACCAACCTATT+GGG | + | chr3.2:77259412-77259431 | MS.gene06892:intron | 30.0% |
| ! | GCTTCATATTTTGTAACACA+TGG | + | chr3.2:77258388-77258407 | MS.gene06892:intron | 30.0% |
| ! | TGATTTTACAACCAACCTAT+TGG | + | chr3.2:77259411-77259430 | MS.gene06892:intron | 30.0% |
| ! | TTTCTTATTTGCTTCTCTTC+TGG | + | chr3.2:77259333-77259352 | MS.gene06892:intron | 30.0% |
| !! | TAAATCAAGTGGTTGGTAAA+TGG | + | chr3.2:77260091-77260110 | MS.gene06892:intron | 30.0% |
| AACTAAGAAGAGTTCCCAAT+AGG | - | chr3.2:77259429-77259448 | None:intergenic | 35.0% | |
| AGCTGTAATAACTATGTCCA+AGG | - | chr3.2:77258422-77258441 | None:intergenic | 35.0% | |
| ATCTACACACATCAAGACAA+TGG | + | chr3.2:77257925-77257944 | MS.gene06892:CDS | 35.0% | |
| CAAATACAGATGAAAGAGGA+TGG | + | chr3.2:77259958-77259977 | MS.gene06892:intron | 35.0% | |
| CTGTAGGAATAGAAGAAACA+TGG | - | chr3.2:77258158-77258177 | None:intergenic | 35.0% | |
| CTTGATTTAGTCCATACATG+TGG | - | chr3.2:77260080-77260099 | None:intergenic | 35.0% | |
| GAAAAGATAAAGGGTAGGAA+TGG | + | chr3.2:77260166-77260185 | MS.gene06892:intron | 35.0% | |
| GCCCAAGATAAATTGAGATT+TGG | - | chr3.2:77259753-77259772 | None:intergenic | 35.0% | |
| GGATTGGATAAGATAATTGG+TGG | + | chr3.2:77258693-77258712 | MS.gene06892:intron | 35.0% | |
| GGTACAAATACAGATGAAAG+AGG | + | chr3.2:77259954-77259973 | MS.gene06892:intron | 35.0% | |
| GTATTTGGTCATTATGCTGT+AGG | - | chr3.2:77258174-77258193 | None:intergenic | 35.0% | |
| TCTAGAAGAGTTGCTGAATT+TGG | - | chr3.2:77258989-77259008 | None:intergenic | 35.0% | |
| TGTTGAGGTAATTTGAGGAT+TGG | + | chr3.2:77258677-77258696 | MS.gene06892:intron | 35.0% | |
| TTGAGGATGAGAAGATTCAT+CGG | - | chr3.2:77260600-77260619 | None:intergenic | 35.0% | |
| TTGATAAAGATGGAAGAGGA+AGG | - | chr3.2:77259569-77259588 | None:intergenic | 35.0% | |
| TTGCATACTAGGTTCCTTAT+CGG | + | chr3.2:77257970-77257989 | MS.gene06892:CDS | 35.0% | |
| TTGCTTCTTCTGATTAACGA+TGG | - | chr3.2:77260385-77260404 | None:intergenic | 35.0% | |
| ! | AACACTTTCAAGTGTAGTGT+TGG | - | chr3.2:77258827-77258846 | None:intergenic | 35.0% |
| ! | ATAATTGGTGGCAGAACTAT+TGG | + | chr3.2:77258705-77258724 | MS.gene06892:intron | 35.0% |
| ! | CATGTATGGACTAAATCAAG+TGG | + | chr3.2:77260080-77260099 | MS.gene06892:intron | 35.0% |
| ! | CTTTCTTTGCATCTTTGGAA+CGG | + | chr3.2:77260495-77260514 | MS.gene06892:CDS | 35.0% |
| ! | GACATCTGAGATCTAACTTA+TGG | + | chr3.2:77258266-77258285 | MS.gene06892:intron | 35.0% |
| ! | TAATTGGTGGCAGAACTATT+GGG | + | chr3.2:77258706-77258725 | MS.gene06892:intron | 35.0% |
| ! | TATGGACTAAATCAAGTGGT+TGG | + | chr3.2:77260084-77260103 | MS.gene06892:intron | 35.0% |
| ! | TTATTTGTCCTTTTATGGCC+AGG | + | chr3.2:77257999-77258018 | MS.gene06892:CDS | 35.0% |
| ! | TTCTTTTCATAACTGTGTGG+TGG | + | chr3.2:77258505-77258524 | MS.gene06892:intron | 35.0% |
| !!! | TTGTTGTTTTTGTTGTCGGA+AGG | - | chr3.2:77260638-77260657 | None:intergenic | 35.0% |
| AACACATGGATGGAATTCCT+TGG | + | chr3.2:77258402-77258421 | MS.gene06892:intron | 40.0% | |
| AACGGCTTTCTTTGCATCTT+TGG | + | chr3.2:77260490-77260509 | MS.gene06892:CDS | 40.0% | |
| AAGAAGAGTTCCCAATAGGT+TGG | - | chr3.2:77259425-77259444 | None:intergenic | 40.0% | |
| AGAAGCAAGAGAATCATCCA+TGG | + | chr3.2:77260397-77260416 | MS.gene06892:CDS | 40.0% | |
| AGATGGCAAGTCAAGTCAAT+CGG | + | chr3.2:77260201-77260220 | MS.gene06892:intron | 40.0% | |
| AGATTCATCGGAGAATCTGT+TGG | - | chr3.2:77260588-77260607 | None:intergenic | 40.0% | |
| ATACTAGGTTCCTTATCGGA+AGG | + | chr3.2:77257974-77257993 | MS.gene06892:CDS | 40.0% | |
| CAAGTTTGAGAGATCAACGA+CGG | - | chr3.2:77259635-77259654 | None:intergenic | 40.0% | |
| CATTGGAAGTTGTAACCATG+TGG | + | chr3.2:77259370-77259389 | MS.gene06892:intron | 40.0% | |
| GAGAATCTGTTGGAATCAGA+GGG | - | chr3.2:77260578-77260597 | None:intergenic | 40.0% | |
| GATAAGGAACCTAGTATGCA+AGG | - | chr3.2:77257971-77257990 | None:intergenic | 40.0% | |
| GATAGGGATGAATCTTGCAA+CGG | + | chr3.2:77260472-77260491 | MS.gene06892:CDS | 40.0% | |
| GTACTCATAATAAGGGGAGA+GGG | + | chr3.2:77260123-77260142 | MS.gene06892:intron | 40.0% | |
| TAAAGGGTAGGAATGGGAAT+TGG | + | chr3.2:77260173-77260192 | MS.gene06892:intron | 40.0% | |
| TACTCATAATAAGGGGAGAG+GGG | + | chr3.2:77260124-77260143 | MS.gene06892:intron | 40.0% | |
| TCAACAATTTGGGAGTAGAG+AGG | - | chr3.2:77259684-77259703 | None:intergenic | 40.0% | |
| TGAATGGTTCCTTGCATACT+AGG | + | chr3.2:77257959-77257978 | MS.gene06892:CDS | 40.0% | |
| TGTACTCATAATAAGGGGAG+AGG | + | chr3.2:77260122-77260141 | MS.gene06892:intron | 40.0% | |
| TGTATATGCAGAAGCTCTGT+TGG | + | chr3.2:77258949-77258968 | MS.gene06892:intron | 40.0% | |
| ! | CAATATTTTCGGATCATGGC+TGG | - | chr3.2:77260227-77260246 | None:intergenic | 40.0% |
| ! | GTGGACATGTTGTCCAATTT+TGG | + | chr3.2:77259078-77259097 | MS.gene06892:intron | 40.0% |
| ! | TTGCATTGATGCATTGAGCA+TGG | + | chr3.2:77258075-77258094 | MS.gene06892:intron | 40.0% |
| !! | GAACTTGCAGATACTGGTTT+AGG | + | chr3.2:77258527-77258546 | MS.gene06892:intron | 40.0% |
| !! | GATGGTGGTGTTGATAAAGA+TGG | - | chr3.2:77259579-77259598 | None:intergenic | 40.0% |
| !! | GGTGTTGATAAAGATGGAAG+AGG | - | chr3.2:77259573-77259592 | None:intergenic | 40.0% |
| !!! | GGCGTTGTTGTTTTTGTTGT+CGG | - | chr3.2:77260642-77260661 | None:intergenic | 40.0% |
| !!! | TTGTTTTTGTTGTCGGAAGG+AGG | - | chr3.2:77260635-77260654 | None:intergenic | 40.0% |
| AAGAGGATCGTCAGGATCAT+CGG | - | chr3.2:77260546-77260565 | None:intergenic | 45.0% | |
| AATTTGGGAGTAGAGAGGAG+AGG | - | chr3.2:77259679-77259698 | None:intergenic | 45.0% | |
| ATCTGTTGGAATCAGAGGGA+AGG | - | chr3.2:77260574-77260593 | None:intergenic | 45.0% | |
| ATGAACTAACTTACCCAGCC+TGG | - | chr3.2:77258020-77258039 | None:intergenic | 45.0% | |
| ATGCAGAAGCTCTGTTGGAT+TGG | + | chr3.2:77258954-77258973 | MS.gene06892:intron | 45.0% | |
| ATTGAGCATGGCTGCATGTA+TGG | + | chr3.2:77258087-77258106 | MS.gene06892:intron | 45.0% | |
| CAACATGTCCACAGCCAAAA+AGG | - | chr3.2:77259070-77259089 | None:intergenic | 45.0% | |
| GGAGAATCTGTTGGAATCAG+AGG | - | chr3.2:77260579-77260598 | None:intergenic | 45.0% | |
| TGCAGAAGCTCTGTTGGATT+GGG | + | chr3.2:77258955-77258974 | MS.gene06892:intron | 45.0% | |
| TGTAACCATGTGGTAGCCTA+TGG | + | chr3.2:77259380-77259399 | MS.gene06892:intron | 45.0% | |
| TGTGTGCAATCAGCCAAACT+TGG | + | chr3.2:77258852-77258871 | MS.gene06892:intron | 45.0% | |
| TTTGTCCATAGGCTACCACA+TGG | - | chr3.2:77259388-77259407 | None:intergenic | 45.0% | |
| ! | GGACTTGTTTCAGAGGAAGT+GGG | + | chr3.2:77259980-77259999 | MS.gene06892:intron | 45.0% |
| ! | GGTTTAGGATAACATGCCCT+TGG | + | chr3.2:77258542-77258561 | MS.gene06892:intron | 45.0% |
| !! | TTTTTGTTGTCGGAAGGAGG+AGG | - | chr3.2:77260632-77260651 | None:intergenic | 45.0% |
| AAAGAGCCAGAAGGTGGAGA+TGG | - | chr3.2:77259610-77259629 | None:intergenic | 50.0% | |
| AAGAGCCAGAAGGTGGAGAT+GGG | - | chr3.2:77259609-77259628 | None:intergenic | 50.0% | |
| AGAAGGTGGAGATGGGGAAT+AGG | - | chr3.2:77259602-77259621 | None:intergenic | 50.0% | |
| AGGATGAGAAGAGGATCGTC+AGG | - | chr3.2:77260554-77260573 | None:intergenic | 50.0% | |
| CATGTCCACAGCCAAAAAGG+AGG | - | chr3.2:77259067-77259086 | None:intergenic | 50.0% | |
| CTTTCAATCGACGACGACGA+AGG | + | chr3.2:77259898-77259917 | MS.gene06892:intron | 50.0% | |
| GAAGGTGGAGATGGGGAATA+GGG | - | chr3.2:77259601-77259620 | None:intergenic | 50.0% | |
| GAATCATCCATGGAGAGACC+AGG | + | chr3.2:77260407-77260426 | MS.gene06892:CDS | 50.0% | |
| GTCTGCAGCTCATGTTTAGC+AGG | + | chr3.2:77258452-77258471 | MS.gene06892:intron | 50.0% | |
| TATTCCCCATCTCCACCTTC+TGG | + | chr3.2:77259601-77259620 | MS.gene06892:intron | 50.0% | |
| TCAGAGGGAAGGATGAGAAG+AGG | - | chr3.2:77260563-77260582 | None:intergenic | 50.0% | |
| TTACCCAGCCTGGCCATAAA+AGG | - | chr3.2:77258010-77258029 | None:intergenic | 50.0% | |
| ! | GAGGATGGGACTTGTTTCAG+AGG | + | chr3.2:77259973-77259992 | MS.gene06892:intron | 50.0% |
| ! | GGGACTTGTTTCAGAGGAAG+TGG | + | chr3.2:77259979-77259998 | MS.gene06892:intron | 50.0% |
| ! | GTGGTGGAACTTGCAGATAC+TGG | + | chr3.2:77258521-77258540 | MS.gene06892:intron | 50.0% |
| ! | TGTCCTTTTATGGCCAGGCT+GGG | + | chr3.2:77258004-77258023 | MS.gene06892:CDS | 50.0% |
| ! | TTGTCCTTTTATGGCCAGGC+TGG | + | chr3.2:77258003-77258022 | MS.gene06892:CDS | 50.0% |
| !! | AGGGTATTGCTGGAACGGAA+TGG | + | chr3.2:77260442-77260461 | MS.gene06892:CDS | 50.0% |
| !! | GGTGAAGGGTATTGCTGGAA+CGG | + | chr3.2:77260437-77260456 | MS.gene06892:CDS | 50.0% |
| !!! | GTCTCTAGGGTCCTCCTTTT+TGG | + | chr3.2:77259053-77259072 | MS.gene06892:intron | 50.0% |
| AACGGAATGGCGAGCTGGAT+AGG | + | chr3.2:77260455-77260474 | MS.gene06892:CDS | 55.0% | |
| ACGACGACGAAGGAGGAAAG+CGG | + | chr3.2:77259908-77259927 | MS.gene06892:intron | 55.0% | |
| ACGACGGTGAAAGAGCCAGA+AGG | - | chr3.2:77259619-77259638 | None:intergenic | 55.0% | |
| ACGGAATGGCGAGCTGGATA+GGG | + | chr3.2:77260456-77260475 | MS.gene06892:CDS | 55.0% | |
| ACGGTGAAAGAGCCAGAAGG+TGG | - | chr3.2:77259616-77259635 | None:intergenic | 55.0% | |
| AGAGCCAGAAGGTGGAGATG+GGG | - | chr3.2:77259608-77259627 | None:intergenic | 55.0% | |
| AGGATCGTCAGGATCATCGG+AGG | - | chr3.2:77260543-77260562 | None:intergenic | 55.0% | |
| ATCGTCAGGATCATCGGAGG+TGG | - | chr3.2:77260540-77260559 | None:intergenic | 55.0% | |
| ATGGAGAGACCAGGACCAGA+GGG | + | chr3.2:77260416-77260435 | MS.gene06892:CDS | 55.0% | |
| CAGCAATACCCTTCACCCTC+TGG | - | chr3.2:77260434-77260453 | None:intergenic | 55.0% | |
| GAGATGGGGAATAGGGATGG+TGG | - | chr3.2:77259594-77259613 | None:intergenic | 55.0% | |
| GAGCATGGCTGCATGTATGG+TGG | + | chr3.2:77258090-77258109 | MS.gene06892:intron | 55.0% | |
| GTGGAGATGGGGAATAGGGA+TGG | - | chr3.2:77259597-77259616 | None:intergenic | 55.0% | |
| TCAATCGACGACGACGAAGG+AGG | + | chr3.2:77259901-77259920 | MS.gene06892:intron | 55.0% | |
| TTGTTGTCGGAAGGAGGAGG+AGG | - | chr3.2:77260629-77260648 | None:intergenic | 55.0% | |
| !! | CAGAGGGTGAAGGGTATTGC+TGG | + | chr3.2:77260432-77260451 | MS.gene06892:CDS | 55.0% |
| !! | GAGAGGAGAGGTGCTGCAAT+CGG | - | chr3.2:77259667-77259686 | None:intergenic | 55.0% |
| !!! | AGGGTCCTCCTTTTTGGCTG+TGG | + | chr3.2:77259059-77259078 | MS.gene06892:intron | 55.0% |
| ACGACGAAGGAGGAAAGCGG+CGG | + | chr3.2:77259911-77259930 | MS.gene06892:intron | 60.0% | |
| ACGTTGACCCGTGCGAAGCA+CGG | + | chr3.2:77259510-77259529 | MS.gene06892:intron | 60.0% | |
| AGACCAGGACCAGAGGGTGA+AGG | + | chr3.2:77260422-77260441 | MS.gene06892:CDS | 60.0% | |
| CATGGAGAGACCAGGACCAG+AGG | + | chr3.2:77260415-77260434 | MS.gene06892:CDS | 60.0% | |
| CTCTGGTCCTGGTCTCTCCA+TGG | - | chr3.2:77260417-77260436 | None:intergenic | 60.0% | |
| GACCAGGACCAGAGGGTGAA+GGG | + | chr3.2:77260423-77260442 | MS.gene06892:CDS | 60.0% | |
| TACCCTTCACCCTCTGGTCC+TGG | - | chr3.2:77260428-77260447 | None:intergenic | 60.0% | |
| AGGAGGAAAGCGGCGGCGAA+TGG | + | chr3.2:77259918-77259937 | MS.gene06892:intron | 65.0% | |
| CGTTGACCCGTGCGAAGCAC+GGG | + | chr3.2:77259511-77259530 | MS.gene06892:intron | 65.0% | |
| GAGGAAAGCGGCGGCGAATG+GGG | + | chr3.2:77259920-77259939 | MS.gene06892:intron | 65.0% | |
| GCGAATGGGGAGAGGGACGA+TGG | + | chr3.2:77259933-77259952 | MS.gene06892:intron | 65.0% | |
| GCTGGAACGGAATGGCGAGC+TGG | + | chr3.2:77260450-77260469 | MS.gene06892:CDS | 65.0% | |
| GGAGGAAAGCGGCGGCGAAT+GGG | + | chr3.2:77259919-77259938 | MS.gene06892:intron | 65.0% | |
| GGAGGAGGAGGCTGTGGTTG+AGG | - | chr3.2:77260617-77260636 | None:intergenic | 65.0% | |
| TCGCGAACCCGTGCTTCGCA+CGG | - | chr3.2:77259521-77259540 | None:intergenic | 65.0% | |
| TCGGAAGGAGGAGGAGGCTG+TGG | - | chr3.2:77260623-77260642 | None:intergenic | 65.0% | |
| AAGCGGCGGCGAATGGGGAG+AGG | + | chr3.2:77259925-77259944 | MS.gene06892:intron | 70.0% | |
| AGCGGCGGCGAATGGGGAGA+GGG | + | chr3.2:77259926-77259945 | MS.gene06892:intron | 70.0% | |
| CGCGAACCCGTGCTTCGCAC+GGG | - | chr3.2:77259520-77259539 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 77257916 | 77260670 | 77257916 | ID=MS.gene06892 |
| chr3.2 | mRNA | 77257916 | 77260670 | 77257916 | ID=MS.gene06892.t1;Parent=MS.gene06892 |
| chr3.2 | exon | 77257916 | 77258025 | 77257916 | ID=MS.gene06892.t1.exon1;Parent=MS.gene06892.t1 |
| chr3.2 | CDS | 77257916 | 77258025 | 77257916 | ID=cds.MS.gene06892.t1;Parent=MS.gene06892.t1 |
| chr3.2 | exon | 77259264 | 77259295 | 77259264 | ID=MS.gene06892.t1.exon2;Parent=MS.gene06892.t1 |
| chr3.2 | CDS | 77259264 | 77259295 | 77259264 | ID=cds.MS.gene06892.t1;Parent=MS.gene06892.t1 |
| chr3.2 | exon | 77260396 | 77260670 | 77260396 | ID=MS.gene06892.t1.exon3;Parent=MS.gene06892.t1 |
| chr3.2 | CDS | 77260396 | 77260670 | 77260396 | ID=cds.MS.gene06892.t1;Parent=MS.gene06892.t1 |
| Gene Sequence |
| Protein sequence |
