AlfalfaGEDB | MS.gene049680

M. sativa cultivar XinJiangDaYe / MS.gene049680

KEGG: K07889
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00071.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049680.t1	XP_003600625.1	99.5	200	1	0	1	200	1	200	1.30E-104	389

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049680.t1	P31583	91.0	200	18	0	1	200	1	200	1.8e-99	363.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049680.t1	G7J7Y2	99.5	200	1	0	1	200	1	200	9.3e-105	389.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene049680	0.801205	1.01E-48	-1.69E-46
MS.gene04920	MS.gene049680	0.810383	1.18E-50	-1.69E-46
MS.gene049680	MS.gene05029	0.927692	8.24E-92	-1.69E-46
MS.gene049680	MS.gene050752	0.826973	2.02E-54	-1.69E-46
MS.gene049680	MS.gene050955	0.859569	3.78E-63	-1.69E-46
MS.gene049680	MS.gene051003	0.82816	1.05E-54	-1.69E-46
MS.gene049680	MS.gene051234	0.814182	1.75E-51	-1.69E-46
MS.gene049680	MS.gene051699	0.836772	7.69E-57	-1.69E-46
MS.gene049680	MS.gene052479	0.804385	2.22E-49	-1.69E-46
MS.gene049680	MS.gene052793	0.812423	4.27E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000342	MS.gene049680	PPI
MS.gene008351	MS.gene049680	PPI
MS.gene028471	MS.gene049680	PPI
MS.gene02877	MS.gene049680	PPI
MS.gene030951	MS.gene049680	PPI
MS.gene040128	MS.gene049680	PPI
MS.gene046987	MS.gene049680	PPI
MS.gene048286	MS.gene049680	PPI
MS.gene049680	MS.gene75479	PPI
MS.gene049680	MS.gene067301	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049680.t1	MTR_3g064390	99.500	200	1	0	1	200	1	200	6.73e-150	414
MS.gene049680.t1	MTR_5g076590	93.000	200	14	0	1	200	1	200	2.87e-142	394
MS.gene049680.t1	MTR_3g064390	92.568	148	11	0	1	148	1	148	1.86e-98	282
MS.gene049680.t1	MTR_8g103550	68.912	193	59	1	8	200	7	198	2.67e-98	283
MS.gene049680.t1	MTR_2g102060	63.000	200	73	1	1	200	1	199	2.36e-92	268
MS.gene049680.t1	MTR_1g094220	65.868	167	56	1	8	173	29	195	9.89e-80	236
MS.gene049680.t1	MTR_1g094220	63.975	161	57	1	8	167	29	189	5.81e-74	222
MS.gene049680.t1	MTR_1g094220	64.557	158	55	1	8	164	29	186	5.75e-73	219
MS.gene049680.t1	MTR_1g094220	63.030	165	59	2	8	171	29	192	6.67e-73	220
MS.gene049680.t1	MTR_8g031660	39.698	199	110	1	12	200	8	206	7.31e-53	168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049680.t1	AT5G45130	79.500	200	41	0	1	200	1	200	8.69e-120	338
MS.gene049680.t1	AT4G19640	78.500	200	43	0	1	200	1	200	7.29e-119	335
MS.gene049680.t1	AT5G45130	81.283	187	35	0	14	200	22	208	5.44e-114	323
MS.gene049680.t1	AT4G19640	84.286	140	22	0	1	140	1	140	2.04e-83	244
MS.gene049680.t1	AT4G19640	82.394	142	25	0	1	142	1	142	3.67e-83	245
MS.gene049680.t1	AT3G54840	63.158	171	62	1	8	177	31	201	1.80e-78	233
MS.gene049680.t1	AT3G54840	63.253	166	60	1	13	177	2	167	2.39e-76	227
MS.gene049680.t1	AT3G54840	63.291	158	57	1	8	164	31	188	9.39e-72	216
MS.gene049680.t1	AT4G18800	40.201	199	109	2	12	200	15	213	1.62e-50	162
MS.gene049680.t1	AT4G39990	39.320	206	106	4	12	200	19	222	1.93e-50	163

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Find 44 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCTAAAAGATTACCA+AGG	0.641621	3.3:+57943301	MS.gene049680:intron
AACAGCTAAAAGATTACCAA+GGG	0.615040	3.3:+57943302	MS.gene049680:intron
AACATGGTCATGGCTCTTGC+TGG	0.370648	3.3:+57941809	MS.gene049680:CDS
AACGGTTAAATTTGAGATTT+GGG	0.317804	3.3:+57940324	MS.gene049680:CDS
AATACATGGGAGCCAAGCTA+TGG	0.603780	3.3:-57940369	None:intergenic
ACAAGAGAGATACCATAGCT+TGG	0.597101	3.3:+57940357	MS.gene049680:CDS
AGCCAGCTCAAAACCCAGCA+GGG	0.622894	3.3:+57943328	MS.gene049680:CDS
AGCTCAAAACCCAGCAGGGA+TGG	0.507722	3.3:+57943332	MS.gene049680:CDS
AGCTGCGCCTCTGTAATACA+TGG	0.526016	3.3:-57940383	None:intergenic
AGGCAACCCAAACATGGTCA+TGG	0.632739	3.3:+57941799	MS.gene049680:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGTTCTGATTCTGAC+TGG	+	chr3.3:57940628-57940647	MS.gene049680:intron	30.0%
AAAATGTTCTGATTCTGACT+GGG	+	chr3.3:57940629-57940648	MS.gene049680:intron	30.0%
AAACAGCTAAAAGATTACCA+AGG	+	chr3.3:57943301-57943320	MS.gene049680:intron	30.0%
AAATAACTTCGTGATGGTTA+TGG	+	chr3.3:57939449-57939468	MS.gene049680:intron	30.0%
AACAGCTAAAAGATTACCAA+GGG	+	chr3.3:57943302-57943321	MS.gene049680:intron	30.0%
AACCAAGTATTACTAGAGAA+AGG	-	chr3.3:57941707-57941726	None:intergenic	30.0%
AAGACTTGAATCCAAAGTAT+AGG	-	chr3.3:57939322-57939341	None:intergenic	30.0%
ACACTTTATTGCAACATTCA+TGG	+	chr3.3:57942916-57942935	MS.gene049680:intron	30.0%
ATGCTTTAATCTGCAGAAAA+TGG	+	chr3.3:57942497-57942516	MS.gene049680:intron	30.0%
ATGGAAAATGCTTTACTAGA+AGG	-	chr3.3:57941246-57941265	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	57938827	57943407	57938827	ID=MS.gene049680
chr3.3	mRNA	57938827	57943407	57938827	ID=MS.gene049680.t1;Parent=MS.gene049680
chr3.3	exon	57938827	57938865	57938827	ID=MS.gene049680.t1.exon1;Parent=MS.gene049680.t1
chr3.3	CDS	57938827	57938865	57938827	ID=cds.MS.gene049680.t1;Parent=MS.gene049680.t1
chr3.3	exon	57938944	57939021	57938944	ID=MS.gene049680.t1.exon2;Parent=MS.gene049680.t1
chr3.3	CDS	57938944	57939021	57938944	ID=cds.MS.gene049680.t1;Parent=MS.gene049680.t1
chr3.3	exon	57940271	57940438	57940271	ID=MS.gene049680.t1.exon3;Parent=MS.gene049680.t1
chr3.3	CDS	57940271	57940438	57940271	ID=cds.MS.gene049680.t1;Parent=MS.gene049680.t1
chr3.3	exon	57941069	57941117	57941069	ID=MS.gene049680.t1.exon4;Parent=MS.gene049680.t1
chr3.3	CDS	57941069	57941117	57941069	ID=cds.MS.gene049680.t1;Parent=MS.gene049680.t1
chr3.3	exon	57941801	57941874	57941801	ID=MS.gene049680.t1.exon5;Parent=MS.gene049680.t1
chr3.3	CDS	57941801	57941874	57941801	ID=cds.MS.gene049680.t1;Parent=MS.gene049680.t1
chr3.3	exon	57942382	57942475	57942382	ID=MS.gene049680.t1.exon6;Parent=MS.gene049680.t1
chr3.3	CDS	57942382	57942475	57942382	ID=cds.MS.gene049680.t1;Parent=MS.gene049680.t1
chr3.3	exon	57943307	57943407	57943307	ID=MS.gene049680.t1.exon7;Parent=MS.gene049680.t1
chr3.3	CDS	57943307	57943407	57943307	ID=cds.MS.gene049680.t1;Parent=MS.gene049680.t1

Gene Sequence

>MS.gene049680

ATGGCTACGATCGCACACAACAATCTCAATGCTAAATTGGTATTTATTTCCTCTGTTTCTCTTCCTTCATCTTTTTTTTAATTCCGATTATACCCTCTAACTTCGTTTTTTAATCAGGTTCTTCTTGGTGATATGGGTGCTGGAAAATCTAGTCTTGTTTTAAGATTTGTCAAGGGTCAATTTCTCGAATTTCAGGTTATTTCCATCATTTTTGATTTGATTAGGAAGTTGTTTAAGTTCAATGGGTTTACGATGTATCATAGACATGTGCTGAATTGAGCTAGTTTATTCTGATTTGGCTAATTAGAAGCTGGGTTTTGTTGTTTTATATCAAGTGTTTCTTATTAATTACAATAAATAACTAATTTTCAAAGTTATCGAGGTAGTAGTAAGCTATGTAGCTGTGACACTTCTGATTAAATACGTGTCTCGTGTCCGACATGTTGTCACTGTAATGTGATGGTTACGGAGGTAGTAGTGAGTCATGTATTACCTATACTTTGGATTCAAGTCTTGTCTGATGTTCCACAATGGAGATAGTAGTTAGCTATGTAGCCCTTACACTTTGATTAAGGAGGTGTCTAGTGTCCGCATGTGTCATTACTGTGGTAATAATTACAATAAATAACTTCGTGATGGTTATGGAGGTAGTAGTGAGCCATCAGCCATGTATTGCCGATACTTCGGATTCAAGTCTTGTCTGATGTCCCACAATGGAGGTAGTAGTTAGCTATGTAGCACTTACACTTTGAATAAGGAGTTGTCTAGTGTCCGACATGTGTCACTACTGTGGTAATAATTACAATAAATAATTTCGTGATGGTTATGGAGGTAGTAGTGATTCACTACTAGTTTCGTGATGTGTCACTACTGTCCGACATGTGTCACTAGTCACTACTAGTGAGCCGTGTAGCACTGACACCACTGATTGGAGACGTGTTCAGTGTCCAACCTGTGTCAGCGTGTGTTTACATTCAATTACTTCCATTTTCTTACATTATTAGTGGTGTCAGTGTCAGTGTTTCATAGGCAGTTAGTTGTTACTAGTAAGTTCTGAAGCACGGACACCTCTTAGATTAGGTGTTTCCTGTGTCCGGCGCGCGTCGGTGTCTGTCTGACACAACACCTACACAAATTTACATTCAATTAATTAATTTTTTCTAATTATCACCTGTGTCGACATATCCATGTCAGTGTCTTGTCGGTGTCTGCTTCATAGCTAGTAAGTATAAGTTAGAATTTTGGAGCTTTAAATAATTGTAGTCTGGTGGGGGAAAAATACTTTTTCTTCTTTCTTTTCTCTGAGGTTGTGTACATTGATTATGTTAATGATGCTTCTGGGTTCTGATTTTGAGCCCTGTTATTTTGTGGCTGGTGATGTGCTTTAAATGTATGGAAACATGTAGATTTTGTTCACGAGTTTATATGGTCTTTTGTGGTGCAGGAATCAACAATAGGGGCAGCATTTTTCTCTCAGACATTAGCAGTAAATGACGCAACGGTTAAATTTGAGATTTGGGACACAGCAGGACAAGAGAGATACCATAGCTTGGCTCCCATGTATTACAGAGGCGCAGCTGCTGCTATAATTGTCTATGACATCACTAGCTCAGTATGATATCTTTGCTTTTGTATATTTTTGAATACCTACTTCGTTGGGCAATCTTTGCCAGTTTTTGACTTGTAATTTTGTGCTGTTATTTTTTTTTCTTCTTGTTTCTGTGTTATCTATAATATTTAACATGATGGTTAGTTAACAGACATAGGAAATAATTGCTGCCTGTTTTAAAATTGATATGTTAAAAATGTTCTGATTCTGACTGGGTGCAATTATACATATGTGCGAAGTATAACTTAAAAATGGAATATATTGAGACACAACTCAGACCTGGAAGTTTAATAAGTATGAAGTGTAATGTCCAGAATGATACTTATTATTTGATAACATATTATCAGCTCTTTATCAGGGAATAACGTTGAATTCCAGAAAAATCCTCATTACAATTGTATGCACAGGGTCCACTTGTTCCAACTATAATTGGTACAAAATTTGGAAAATTGCATAATGCATCATATTACTAAAACATCAATTTTTTCCTAAACGTGGAAGAGATCGAATATGCTAACGGGATTCTTTCTTTTGTCTTGTGGTTGGGCTGGATCTGGTACTTTTCTTTTAGCATTTTATTCGTCTAATTTCTCAGTAGGGTTTAATATGATTACTTCTATCTTCTATTCACAGGATTCCTTCTCACGAGCTAAGAAGTGGGTCCAAGAGCTTCAAAAGCAAGGTATTAACTTTTTGGTTCAGGAATTTTTTTATATATTTTTTTTCTTTCTAAATAAGAATAGAATTGATATATTGCAAAAGGAATTTAAGCTTTGTATAAAACCATTTCCAAACTTCTGGATGGTACCTTCTAGTAAAGCATTTTCCATATCTGCCAATGTCAATGTCCCTCGTGTTATCTTTTATGTTTTACTAGATTCAATTTTGGAATAACTTATTAATCATTTGAGGAAATTCTATAGTCATGTTTTATAATAGAACAGCATGGCACATATATGAATGAATTGCACTTGAGATGATATCAGAAAGATTAAGTGCATGTAAGTATTGTGAACAGGGAGAGATTCAAGATTCCATGTACAGAGAGCCAGAGACACATTTAACTTTTGAGTGCAATGAGTTACATATGATATTAAATGATTTGAATAAATATCTAGTTATTTTTTACTATACATCTTGCTAGAAGGACTCAGCTATCAATGATGTACATTCTTAATCAACATACAATAGGTACTAATGCTCGTGTTGAAAATTTAAGACTTTGTCTTGATATATGTATCAATCAAACATTGTCTGCTTTGGATTTTCCTTTCTCTAGTAATACTTGGTTTGGTTTATGATAGCTGTACTAATTGCCTAACTAGATTGTCAAATAATGCTCTAATTTCATGTTGTTGCTTGCAGGCAACCCAAACATGGTCATGGCTCTTGCTGGCAACAAATCTGACTTGGAAGATAAAAGAAAAGTGACAGCCGAAGTAAGTGTCAATATTCTCCAATATTGCTTTTTATACCATGTTAGTAAGTGTTATGTGCAGAGTATAGAAAAAGAACAATGGCACATGTTATGCACATACCTATCCTAAGCAATCAATAACAAAGCATCAGGGGCTGATATTTACACATAAATTGTTAGCAAAGAAGTTAATCACAGGCATAACACTCAATGTCTCCATCAGATTTCACTAATTGGTCAACAATTCAATTGCTTTTGAAGTGTTTGGAAGGGTTATGAATCTTTCTAACACAAGAATTGTGTGTGTGTGTGTGTGTGGGTGGGGTGGGGGCTAGGTTTCAATCTGGCTTAAATAATTAATTTACAGTGATGCTGATTTTGTACCATCATAAAACTTCAATTTTGACATAATAGATGCCCATTGCAGCATGATTGGTAATTTCATAGGTTATATAACCAATATACTATAATCAATAATCACTTTTCCTGGACCTACTGGTTTATCACTTTCGATTCATTGATATTGCAGGAAGCTCGTGTATATGCCGAGGAAAATGGTTTGTTTTTCATGGAGACCTCTGCCAAATCTGCAGCCAATGTTAATGATGTATTTTATGAAATAGGTGAGTCAATTCCTATTATATATGCTTTAATCTGCAGAAAATGGTCTTATTTTATTCTTGGTTGAATCCCTTATAAAAAGGAAAGTTTAGGGGAATATTATTAGCCCGAAGAGTGGGGAAGCTTTCTTTTGAGGGAATTGAGAAAATATTTGTCTCCACTTTACACTCCAAGACATTGCTATCATATTCATTAGCGATTGAAGTTAAATTCAAAATTTATCAAATCTTCTCTAATTGGTTATAAGCCATGGCGCACAGTTGTCTGAATCTGAACCTTCTCATAATTCATAAAGTCTTCTCTAATTGGCTATTGGCCATGGCACAGTTATCCAAACCTTCTCAAGACATGCCTTGTTCCTGAAACTTGTCTTCAGTCCATATTATATGTACCCTTTTTGGTCACTTTAATGTTGCCAGAAATTTTCCCTTTTGTCCTTATTACACTTTATTGCAACATTCATGGGTTATTTTCCTTCTGTTCCTAGCAGGCTTCCGCTTTATGTTATTGGCGTATCGAATATTATTTATTCAGTTATTACTCTATATCCTAATTTCTGTTTTTTCATAGGCAAAATGTTAGTAAGTCGGTAGTAATGTCAGTTTTCAGGGTTGGAATCTTGAACCTCCTTAAAACTCATTTGGTGTCTCTTAGCTCACCAATCGCCTACATATGTGGGACATATTCCGAATTTCTGTTAAATTTCATGTTCTAGAAATCTTGCCAATTGATCTACATTTTATGATCATACAATGCTTTTAAATAGTGTTTCATCTTCCATAAACTGCAAACTTTGATTACATTGCCTAACTTACAATTGCTTGTGTAAACAGCTAAAAGATTACCAAGGGCTCAGCCAGCTCAAAACCCAGCAGGGATGGTTCTTGTTGATAGACCTGCCGAAGGATCTAGGGCTGCATCGTGTTGTTCATAA

Protein sequence

>MS.gene049680.t1

MATIAHNNLNAKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFSRAKKWVQELQKQGNPNMVMALAGNKSDLEDKRKVTAEEARVYAEENGLFFMETSAKSAANVNDVFYEIAKRLPRAQPAQNPAGMVLVDRPAEGSRAASCCS