AlfalfaGEDB | MS.gene06895

M. sativa cultivar XinJiangDaYe / MS.gene06895

KEGG: K14293
GO: GO:0003674 GO:0005488 GO:0005515 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008536 GO:0015031 GO:0015833 GO:0017016 GO:0019899 GO:0031267 GO:0033036 GO:0042886 GO:0045184 GO:0046907 GO:0051020 GO:0051179 GO:0051234 GO:0051641 GO:0071702 GO:0071705
PFAM: PF03810.22 PF12755.10 PF13513.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06895.t1	KEH35467.1	99.7	869	3	0	1	869	1	869	0.00E+00	1698.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06895.t1	Q9FJD4	79.5	869	177	1	1	869	3	870	0.0e+00	1386.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06895.t1	A0A072V0X7	99.7	869	3	0	1	869	1	869	0.0e+00	1698.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049287	MS.gene06895	0.852987	3.22E-61	-1.69E-46
MS.gene050330	MS.gene06895	0.806725	7.15E-50	-1.69E-46
MS.gene050786	MS.gene06895	0.839837	1.25E-57	-1.69E-46
MS.gene052309	MS.gene06895	0.830764	2.44E-55	-1.69E-46
MS.gene052358	MS.gene06895	0.854742	1.01E-61	-1.69E-46
MS.gene052361	MS.gene06895	0.830869	2.30E-55	-1.69E-46
MS.gene054017	MS.gene06895	0.801491	8.78E-49	-1.69E-46
MS.gene054952	MS.gene06895	0.856807	2.51E-62	-1.69E-46
MS.gene055784	MS.gene06895	0.818855	1.58E-52	-1.69E-46
MS.gene055785	MS.gene06895	0.805536	1.27E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06895.t1	MTR_3g491860	99.655	869	3	0	1	869	1	869	0.0	1789
MS.gene06895.t1	MTR_3g491840	90.564	869	81	1	1	869	1	868	0.0	1588
MS.gene06895.t1	MTR_8g099785	77.995	868	188	2	1	867	3	868	0.0	1427
MS.gene06895.t1	MTR_1g059590	32.517	449	240	15	127	536	3	427	8.71e-40	156
MS.gene06895.t1	MTR_1g059590	31.881	436	215	15	133	536	9	394	1.20e-34	140
MS.gene06895.t1	MTR_1g112920	23.726	628	342	26	29	590	45	601	5.61e-21	99.4
MS.gene06895.t1	MTR_1g112920	23.726	628	342	26	29	590	45	601	7.30e-21	99.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06895.t1	AT5G53480	79.517	869	177	1	1	869	3	870	0.0	1437
MS.gene06895.t1	AT3G08947	57.099	655	276	5	213	865	1	652	0.0	747
MS.gene06895.t1	AT3G08947	59.386	586	233	5	213	796	1	583	0.0	700
MS.gene06895.t1	AT2G16950	24.503	604	331	23	46	590	61	598	9.22e-27	117
MS.gene06895.t1	AT2G16950	24.507	608	330	24	46	590	61	602	5.50e-26	115

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Find 221 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGCCATTGGTGTCGT+TGG	0.535827	3.2:-77229804	MS.gene06895:CDS
AAAATATTCCCTTACTGTGA+TGG	0.478884	3.2:-77230284	MS.gene06895:CDS
AAAATCAGGGCCTATCGCAT+AGG	0.593832	3.2:+77230427	None:intergenic
AAACAGTGGCCTGAACTGAT+AGG	0.477544	3.2:-77231952	MS.gene06895:CDS
AAAGGCTGTTAGGAGTGATG+AGG	0.635593	3.2:-77231533	MS.gene06895:CDS
AAATATTCCCTTACTGTGAT+GGG	0.479316	3.2:-77230283	MS.gene06895:CDS
AAATGCCACTGCCCATGAGG+AGG	0.637700	3.2:-77230474	MS.gene06895:CDS
AACAGATATAGCACGATTGA+TGG	0.383244	3.2:+77229647	None:intergenic
AACAGATGAAACAGCTCCTT+TGG	0.387973	3.2:-77230720	MS.gene06895:CDS
AACAGCAGAGGGACGAGTGC+AGG	0.444736	3.2:+77231376	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATATTCCCTTACTGTGA+TGG	-	chr3.2:77231684-77231703	MS.gene06895:CDS	30.0%
AAATATTCCCTTACTGTGAT+GGG	-	chr3.2:77231685-77231704	MS.gene06895:CDS	30.0%
AACATTACTCAAACAAGAAG+AGG	-	chr3.2:77230618-77230637	MS.gene06895:CDS	30.0%
AATTGTACTCCAGAATTCAA+TGG	+	chr3.2:77230479-77230498	None:intergenic	30.0%
AGAATATTACCAAACCAGAT+TGG	-	chr3.2:77230758-77230777	MS.gene06895:CDS	30.0%
ATACTGCAAGAGAACATATT+TGG	+	chr3.2:77231430-77231449	None:intergenic	30.0%
ATTGTTATGAAAACAGCCAT+TGG	-	chr3.2:77232155-77232174	MS.gene06895:CDS	30.0%
CATATATAACATCACAGCAA+AGG	-	chr3.2:77230417-77230436	MS.gene06895:CDS	30.0%
GAAAAACAGAGTGAACTTAT+AGG	-	chr3.2:77231348-77231367	MS.gene06895:CDS	30.0%
GATATCTTGGAAGAATATGT+GGG	-	chr3.2:77230514-77230533	MS.gene06895:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	77229644	77232346	77229644	ID=MS.gene06895
chr3.2	mRNA	77229644	77232346	77229644	ID=MS.gene06895.t1;Parent=MS.gene06895
chr3.2	exon	77229936	77232346	77229936	ID=MS.gene06895.t1.exon1;Parent=MS.gene06895.t1
chr3.2	CDS	77229936	77232346	77229936	ID=cds.MS.gene06895.t1;Parent=MS.gene06895.t1
chr3.2	exon	77229644	77229842	77229644	ID=MS.gene06895.t1.exon2;Parent=MS.gene06895.t1
chr3.2	CDS	77229644	77229842	77229644	ID=cds.MS.gene06895.t1;Parent=MS.gene06895.t1

Gene Sequence

>MS.gene06895

ATGGAAGTTACTCAGGCACTTTTGAATGCTCAATCCATTGACGGAACTGTACGTAAGCATGCTGAAGAAAGTCTTCGGCAATTTCAGGAGCAAAACCTTCCTGGTTTCTTGGTCTCTCTTTCTGGGGAGTTAGCAAGTGAAGATAAACCAGTTGATAGCCGAAAGTTGGCAGGTTTGATACTTAAAAATGCATTGGATGCCAAGGATGAAAACAGAAAGCGGGAATTGGTTCAGAGATGGTTGTCATTAGACACTGCAGCGAAGGCCCAGGTTAAGGCATGTTTGCTTCAAACACTCTCCTCTCTTGTACTTGACGCTCGGTCTACAGCAGCTCAAGTTGTTGCTAAAATTGCTGGAATTGAGCTTCCTCAGAAACAGTGGCCTGAACTGATAGGATCACTATTATCAAATATTCACCAAGTTCCTGCTCATGTCAAGCAAGCAACTTTGGAGACTCTGGGGTATTTGTGTGAGGAAGTCCCCCATGAGGTTGTTGATCAAGACCAAGTAAATAAAATTCTTACTGCTGTAGTTCAAGGTATGAACTCATCTGAAAAGAACAATGATGTCAGACTTGCTGCTGCCAGGGCATTGTATAATGCTCTCGAATTTGCGCAGGCTAATTTTAGCAATGATATGGAGCGTGAGTACATCATGAGAGTTGTTTGTGAGACAACTATGTCTCCTGAATTGAAAATACGTCTCGCAGCTTTTGAATGTTTGGTCTCCATTGCGGCCATGTATTATGTGAAGTTGGCTCCTTACATCCAGGACATATATAACATCACAGCAAAGGCTGTTAGGAGTGATGAGGAGCCTGTTGCTCTCCAAGCCATTGAATTCTGGAGTACAATTTGTGATGAAGAGACTGATATCTTGGAAGAATATGTGGGTGATACCACTGGGGACTCTGATATACCTTGTTTTTATTTCATTAAGCAAGCCCTTCCTGCACTCGTCCCTCTGCTGTTGGAAACATTACTCAAACAAGAAGAGGATCAAGATCTGGATGAAGGTGCATGGAATATTGCAATGGCAGGTGGTACATGCCTTGGTTTAGTTGCTCGTACTACTGGAGATGATATTGTGCCACTTGTAATGCCTTTCATTGAGGAGAATATTACCAAACCAGATTGGAGACAGAGGGAAGCAGCGACGTATGCATTTGGCTCTATCTTGGAGGGGCCTTCTCCAGACAAATTAGTACCTCTTGTTAATCACGCCCTACCATTTATGCTCAGTGCTCTAGTAAAGGATCCAAGCAACCATGTTAAAGACACCACTGCTTGGACTTTGGGGCGGATGTTTGAATTTCTTCACAGTTCAATTGTTGGCACACCTATTATTAATGAGGGAAATGCCCAACAAATTATTACAGTTCTCCTTCAGAGCATGAAGGATGTCCCTAATGTTGCTGAGAAAGGCTGTGGAGCCCTGTATTTTCTCGCCCAGGGTTATGAGGATGTGGGAATAACATCCCCTATAACTCCCTTTTTTCAGGAAATTGTTCAAGCCCTTCTCACTGTCACCCACAGAGAGGATGCTACGGAGTCACGGTTAAGAACTTCAGCATATGAAACATTGAATGAAGTAGTAAGATGTTCAACAGATGAAACAGCTCCTTTGGTGTTGCAACTAGTTTCTGTCATCATGATGGAGCTGCACAAATGTCTTGAAGCACAAAATCTTTCATCTGATGAAAGAGAAAAACAGAGTGAACTTATAGGCCTTCTTTGTGGGTGCTTGACAGTCATTATTCAGAAGCTAGGGTCTTCAGAACCTACCAAATATGTTCTCTTGCAGTATGCTGATCAGATAATGGGACTATTCATCCGGGTCTTTGCTTGTAGAAATGCCACTGCCCATGAGGAGGCCATGCTAGCTATTGGAGCCCTTGCCTATGCGATAGGCCCTGATTTTGCTAAATACCTGCCTGAATTTTACAAGTTTCTTGAGATTGACCTTCAGAATTTTGAGGAGTACCAAGTTTGTGCCGTAACTGTTGGTGTAGTCGGCGACATATGCAGGGCATTGGAGGATAAAATATTCCCTTACTGTGATGGGATTATGACACAGCTTCTCAAAAATTTGTCGAGTGATAACTTGCACCGTTCTGTGAAGCCCCCCTTGTTTTCATGCATTGGTGATATAGCACTAGCTATAGGAGACAACTTTGAGAAGTACTTAATGTATGCAATGAAGACACTACAAATTGCTGCAGAGATGTACGCCCACACATCAGGCTTTGACTTGGAAATGACAGAGTACATTAACTCTTTGAGAAATGGGATATTAGAGGCATATTCTGGGATCTTCCAAGGGTTTAAGAATTCATCAAAATCCCAGATCTTGATTCCTTATGCTCCCCACATTCTCCAGTTCTTGGATAGCATATACATGGAAAAAGACATGTGAGAAAGCAAAATAGTTCATTTTCCAATTTAATTTTCATAGCAATAATATATTCATTGTTTTAGTGACTTCATTGACTTTTCTTACTGCAGGGATGACATTGTTATGAAAACAGCCATTGGTGTCGTTGGAGATCTAGCTGATACACTTGGAAGCAATGCTGGTTCGTTAATTCAACAGTCTTTGTCAAGCACACAATTTTTGAATGAATGTCTGACCTCAGATGATCATATGATTAAAGAATCTGCCGAATGGGCCAAGTTGGCCATCAATCGTGCTATATCTGTTTGA

Protein sequence

>MS.gene06895.t1

MEVTQALLNAQSIDGTVRKHAEESLRQFQEQNLPGFLVSLSGELASEDKPVDSRKLAGLILKNALDAKDENRKRELVQRWLSLDTAAKAQVKACLLQTLSSLVLDARSTAAQVVAKIAGIELPQKQWPELIGSLLSNIHQVPAHVKQATLETLGYLCEEVPHEVVDQDQVNKILTAVVQGMNSSEKNNDVRLAAARALYNALEFAQANFSNDMEREYIMRVVCETTMSPELKIRLAAFECLVSIAAMYYVKLAPYIQDIYNITAKAVRSDEEPVALQAIEFWSTICDEETDILEEYVGDTTGDSDIPCFYFIKQALPALVPLLLETLLKQEEDQDLDEGAWNIAMAGGTCLGLVARTTGDDIVPLVMPFIEENITKPDWRQREAATYAFGSILEGPSPDKLVPLVNHALPFMLSALVKDPSNHVKDTTAWTLGRMFEFLHSSIVGTPIINEGNAQQIITVLLQSMKDVPNVAEKGCGALYFLAQGYEDVGITSPITPFFQEIVQALLTVTHREDATESRLRTSAYETLNEVVRCSTDETAPLVLQLVSVIMMELHKCLEAQNLSSDEREKQSELIGLLCGCLTVIIQKLGSSEPTKYVLLQYADQIMGLFIRVFACRNATAHEEAMLAIGALAYAIGPDFAKYLPEFYKFLEIDLQNFEEYQVCAVTVGVVGDICRALEDKIFPYCDGIMTQLLKNLSSDNLHRSVKPPLFSCIGDIALAIGDNFEKYLMYAMKTLQIAAEMYAHTSGFDLEMTEYINSLRNGILEAYSGIFQGFKNSSKSQILIPYAPHILQFLDSIYMEKDMDDIVMKTAIGVVGDLADTLGSNAGSLIQQSLSSTQFLNECLTSDDHMIKESAEWAKLAINRAISV