AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06895

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06895.t1 MTR_3g491860 99.655 869 3 0 1 869 1 869 0.0 1789
MS.gene06895.t1 MTR_3g491840 90.564 869 81 1 1 869 1 868 0.0 1588
MS.gene06895.t1 MTR_8g099785 77.995 868 188 2 1 867 3 868 0.0 1427
MS.gene06895.t1 MTR_1g059590 32.517 449 240 15 127 536 3 427 8.71e-40 156
MS.gene06895.t1 MTR_1g059590 31.881 436 215 15 133 536 9 394 1.20e-34 140
MS.gene06895.t1 MTR_1g112920 23.726 628 342 26 29 590 45 601 5.61e-21 99.4
MS.gene06895.t1 MTR_1g112920 23.726 628 342 26 29 590 45 601 7.30e-21 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06895.t1 AT5G53480 79.517 869 177 1 1 869 3 870 0.0 1437
MS.gene06895.t1 AT3G08947 57.099 655 276 5 213 865 1 652 0.0 747
MS.gene06895.t1 AT3G08947 59.386 586 233 5 213 796 1 583 0.0 700
MS.gene06895.t1 AT2G16950 24.503 604 331 23 46 590 61 598 9.22e-27 117
MS.gene06895.t1 AT2G16950 24.507 608 330 24 46 590 61 602 5.50e-26 115

Find 221 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTCTTGGTCTCTCTTTC+TGG -0.012550 3.2:-77232222 MS.gene06895:CDS
CTCTCCAAGCCATTGAATTC+TGG 0.197925 3.2:-77231501 MS.gene06895:CDS
AGAAAGTCTTCGGCAATTTC+AGG 0.216352 3.2:-77232259 MS.gene06895:CDS
GGGATATTAGAGGCATATTC+TGG 0.268252 3.2:-77230038 MS.gene06895:CDS
GCATTTCCCTCATTAATAAT+AGG 0.268484 3.2:+77230986 None:intergenic
GACACCACTGCTTGGACTTT+GGG 0.272684 3.2:-77231049 MS.gene06895:CDS
GCAAAACCTTCCTGGTTTCT+TGG 0.279761 3.2:-77232235 MS.gene06895:CDS
CAGCCTTTCTCAGCAACATT+AGG 0.287721 3.2:+77230920 None:intergenic
TCCCCACATTCTCCAGTTCT+TGG 0.294606 3.2:-77229961 MS.gene06895:CDS
ACTAGAGCACTGAGCATAAA+TGG 0.300642 3.2:+77231097 None:intergenic
GTTTCTTGGTCTCTCTTTCT+GGG 0.305155 3.2:-77232221 MS.gene06895:CDS
TACATTAACTCTTTGAGAAA+TGG 0.314718 3.2:-77230059 MS.gene06895:CDS
CAAGTTGTTGCTAAAATTGC+TGG 0.321014 3.2:-77231991 MS.gene06895:CDS
GGCAGGTATTTAGCAAAATC+AGG 0.324114 3.2:+77230413 None:intergenic
ATACTGCAAGAGAACATATT+TGG 0.329593 3.2:+77230541 None:intergenic
TCAAGAAACTTGTAAAATTC+AGG 0.332719 3.2:+77230392 None:intergenic
AGACACCACTGCTTGGACTT+TGG 0.341617 3.2:-77231050 MS.gene06895:CDS
AACTTATAGGCCTTCTTTGT+GGG 0.345240 3.2:-77230607 MS.gene06895:CDS
GCTTCCCTCTGTCTCCAATC+TGG 0.354117 3.2:+77231196 None:intergenic
GCAGTATGCTGATCAGATAA+TGG 0.356944 3.2:-77230525 MS.gene06895:CDS
TTTCAGGAGCAAAACCTTCC+TGG 0.362971 3.2:-77232243 MS.gene06895:CDS
ATTCTTACTGCTGTAGTTCA+AGG 0.372529 3.2:-77231808 MS.gene06895:CDS
TTTGAGAAATGGGATATTAG+AGG 0.373265 3.2:-77230048 MS.gene06895:CDS
AACAGATATAGCACGATTGA+TGG 0.383244 3.2:+77229647 None:intergenic
AACAGATGAAACAGCTCCTT+TGG 0.387973 3.2:-77230720 MS.gene06895:CDS
AGCCTTTCTCAGCAACATTA+GGG 0.389846 3.2:+77230921 None:intergenic
GGTTTAGTTGCTCGTACTAC+TGG 0.395020 3.2:-77231271 MS.gene06895:CDS
GAACTTATAGGCCTTCTTTG+TGG 0.395988 3.2:-77230608 MS.gene06895:CDS
GGAGAACTGTAATAATTTGT+TGG 0.397331 3.2:+77230963 None:intergenic
ACATCACAGCAAAGGCTGTT+AGG 0.397636 3.2:-77231543 MS.gene06895:CDS
GTATGCATTTGGCTCTATCT+TGG 0.398069 3.2:-77231167 MS.gene06895:CDS
GTATCAAACCTGCCAACTTT+CGG 0.403548 3.2:+77232166 None:intergenic
GCCAACTTTCGGCTATCAAC+TGG 0.406087 3.2:+77232177 None:intergenic
TACTCCAGAATTCAATGGCT+TGG 0.406106 3.2:+77231497 None:intergenic
CCTCTGTCTCCAATCTGGTT+TGG 0.406779 3.2:+77231201 None:intergenic
TGAAAACAGAAAGCGGGAAT+TGG 0.407494 3.2:-77232118 MS.gene06895:CDS
TTTCTTCACAGTTCAATTGT+TGG 0.411323 3.2:-77231013 MS.gene06895:CDS
TGCAGCGAAGGCCCAGGTTA+AGG 0.412867 3.2:-77232070 MS.gene06895:CDS
GCAAGCAACTTTGGAGACTC+TGG 0.414579 3.2:-77231887 MS.gene06895:CDS
GAGCATAAGGAATCAAGATC+TGG 0.417948 3.2:+77229982 None:intergenic
GTGTAGTCGGCGACATATGC+AGG 0.418380 3.2:-77230319 MS.gene06895:CDS
GAGGAGGCCATGCTAGCTAT+TGG 0.419964 3.2:-77230458 MS.gene06895:CDS
ACAAGAGGTACTAATTTGTC+TGG 0.420575 3.2:+77231133 None:intergenic
CTTACGTACAGTTCCGTCAA+TGG 0.421548 3.2:+77232290 None:intergenic
ACATTAACTCTTTGAGAAAT+GGG 0.422715 3.2:-77230058 MS.gene06895:CDS
AATAGTGATCCTATCAGTTC+AGG 0.424523 3.2:+77231943 None:intergenic
AGCACGATTGATGGCCAACT+TGG 0.424564 3.2:+77229656 None:intergenic
GAGAACTGTAATAATTTGTT+GGG 0.427273 3.2:+77230964 None:intergenic
TGCACTCGTCCCTCTGCTGT+TGG 0.428521 3.2:-77231374 MS.gene06895:CDS
TGTATATGCTATCCAAGAAC+TGG 0.432522 3.2:+77229949 None:intergenic
TGATGAAGAGACTGATATCT+TGG 0.432783 3.2:-77231467 MS.gene06895:CDS
TCAATGGCTTGGAGAGCAAC+AGG 0.436583 3.2:+77231508 None:intergenic
ATGTCAGACTTGCTGCTGCC+AGG 0.436780 3.2:-77231759 MS.gene06895:CDS
CAGTATGCTGATCAGATAAT+GGG 0.437742 3.2:-77230524 MS.gene06895:CDS
TGGAGAATGTGGGGAGCATA+AGG 0.441829 3.2:+77229969 None:intergenic
AACAGCAGAGGGACGAGTGC+AGG 0.444736 3.2:+77231376 None:intergenic
AATCGTGCTATATCTGTTTG+AGG 0.448881 3.2:-77229642 None:intergenic
GAAGCAGCGACGTATGCATT+TGG 0.449296 3.2:-77231178 MS.gene06895:CDS
TCATGTCAAGCAAGCAACTT+TGG 0.450868 3.2:-77231896 MS.gene06895:CDS
GAAGCAAACATGCCTTAACC+TGG 0.450881 3.2:+77232058 None:intergenic
ACAGTCATTATTCAGAAGCT+AGG 0.451708 3.2:-77230578 MS.gene06895:CDS
TTGAATGCTCAATCCATTGA+CGG 0.452532 3.2:-77232303 MS.gene06895:CDS
GTCTTGATCAACAACCTCAT+GGG 0.455712 3.2:+77231843 None:intergenic
TGCATTTGGCTCTATCTTGG+AGG 0.457960 3.2:-77231164 MS.gene06895:CDS
GCTTGACATGAGCAGGAACT+TGG 0.460430 3.2:+77231908 None:intergenic
GATGGCCAACTTGGCCCATT+CGG 0.460803 3.2:+77229665 None:intergenic
TTGATGAATTCTTAAACCCT+TGG 0.462813 3.2:+77230009 None:intergenic
AATTGTACTCCAGAATTCAA+TGG 0.464626 3.2:+77231492 None:intergenic
AACCCTGGGCGAGAAAATAC+AGG 0.464646 3.2:+77230891 None:intergenic
CGCCCAGGGTTATGAGGATG+TGG 0.470202 3.2:-77230879 MS.gene06895:CDS
TTATATATGTCCTGGATGTA+AGG 0.474321 3.2:+77231565 None:intergenic
GAGATGTACGCCCACACATC+AGG 0.474951 3.2:-77230104 MS.gene06895:CDS
ACAAGAAGAGGATCAAGATC+TGG 0.475193 3.2:-77231338 MS.gene06895:CDS
GATACACTTGGAAGCAATGC+TGG 0.475465 3.2:-77229771 MS.gene06895:CDS
CTCTGTGGGTGACAGTGAGA+AGG 0.475830 3.2:+77230810 None:intergenic
AAACAGTGGCCTGAACTGAT+AGG 0.477544 3.2:-77231952 MS.gene06895:CDS
AGATAATGGGACTATTCATC+CGG 0.478120 3.2:-77230511 MS.gene06895:CDS
AAAATATTCCCTTACTGTGA+TGG 0.478884 3.2:-77230284 MS.gene06895:CDS
AAATATTCCCTTACTGTGAT+GGG 0.479316 3.2:-77230283 MS.gene06895:CDS
GTCATAATCCCATCACAGTA+AGG 0.480569 3.2:+77230275 None:intergenic
CGACATATGCAGGGCATTGG+AGG 0.480820 3.2:-77230309 MS.gene06895:CDS
CATGGCCTCCTCATGGGCAG+TGG 0.481836 3.2:+77230469 None:intergenic
GATTAAAGAATCTGCCGAAT+GGG 0.485471 3.2:-77229679 MS.gene06895:CDS
GCATTTGGCTCTATCTTGGA+GGG 0.486868 3.2:-77231163 MS.gene06895:CDS
CAGAGGGACGAGTGCAGGAA+GGG 0.487738 3.2:+77231381 None:intergenic
GAATATGTGGGTGATACCAC+TGG 0.488697 3.2:-77231442 MS.gene06895:CDS
CAACAGTTACGGCACAAACT+TGG 0.489107 3.2:+77230342 None:intergenic
GTCCCTAATGTTGCTGAGAA+AGG 0.491608 3.2:-77230923 MS.gene06895:CDS
CGGCGACATATGCAGGGCAT+TGG 0.493884 3.2:-77230312 MS.gene06895:CDS
AGAATATTACCAAACCAGAT+TGG 0.501979 3.2:-77231210 MS.gene06895:CDS
GTTGATAGCCGAAAGTTGGC+AGG 0.503864 3.2:-77232174 MS.gene06895:CDS
CTGTGATGTTATATATGTCC+TGG 0.504029 3.2:+77231557 None:intergenic
GGTCTTGATCAACAACCTCA+TGG 0.504483 3.2:+77231842 None:intergenic
TGGCACACCTATTATTAATG+AGG 0.506178 3.2:-77230993 MS.gene06895:CDS
GAGCACTGAGCATAAATGGT+AGG 0.506623 3.2:+77231101 None:intergenic
CCTCTCTTGTACTTGACGCT+CGG 0.507603 3.2:-77232026 MS.gene06895:CDS
GGTGATATAGCACTAGCTAT+AGG 0.507802 3.2:-77230182 MS.gene06895:CDS
GCCGACTACACCAACAGTTA+CGG 0.508961 3.2:+77230331 None:intergenic
GTTGCTTGCTTGACATGAGC+AGG 0.509107 3.2:+77231901 None:intergenic
GCATATTCTGGGATCTTCCA+AGG 0.514404 3.2:-77230026 MS.gene06895:CDS
ATCTGCCGAATGGGCCAAGT+TGG 0.515537 3.2:-77229670 MS.gene06895:CDS
AGCTAGCATGGCCTCCTCAT+GGG 0.516971 3.2:+77230463 None:intergenic
ACTTGTAATGCCTTTCATTG+AGG 0.519790 3.2:-77231233 MS.gene06895:CDS
CCACACATCAGGCTTTGACT+TGG 0.521208 3.2:-77230093 MS.gene06895:CDS
TGTCAGACTTGCTGCTGCCA+GGG 0.521590 3.2:-77231758 MS.gene06895:CDS
ATGGCAGGTGGTACATGCCT+TGG 0.523405 3.2:-77231292 MS.gene06895:CDS
AGCATGCTGAAGAAAGTCTT+CGG 0.523420 3.2:-77232269 MS.gene06895:CDS
GGATATTAGAGGCATATTCT+GGG 0.524280 3.2:-77230037 MS.gene06895:CDS
GTGTCTTTAACATGGTTGCT+TGG 0.524596 3.2:+77231067 None:intergenic
ACCAGTTGATAGCCGAAAGT+TGG 0.526677 3.2:-77232178 MS.gene06895:CDS
GTAATATTCTCCTCAATGAA+AGG 0.527093 3.2:+77231223 None:intergenic
TCTGTGGGTGACAGTGAGAA+GGG 0.528574 3.2:+77230811 None:intergenic
TAGCTAGCATGGCCTCCTCA+TGG 0.530327 3.2:+77230462 None:intergenic
ATCACCAATGCATGAAAACA+AGG 0.531126 3.2:+77230199 None:intergenic
TGATATCTTGGAAGAATATG+TGG 0.534358 3.2:-77231455 MS.gene06895:CDS
GAAAGAGAGACCAAGAAACC+AGG 0.534523 3.2:+77232225 None:intergenic
CAAGCAACTTTGGAGACTCT+GGG 0.535824 3.2:-77231886 MS.gene06895:CDS
AAAACAGCCATTGGTGTCGT+TGG 0.535827 3.2:-77229804 MS.gene06895:CDS
AGTAATGTTTCCAACAGCAG+AGG 0.542094 3.2:+77231364 None:intergenic
CAGTCATTATTCAGAAGCTA+GGG 0.543317 3.2:-77230577 MS.gene06895:CDS
AACATTACTCAAACAAGAAG+AGG 0.546231 3.2:-77231350 MS.gene06895:CDS
GTCATTAGACACTGCAGCGA+AGG 0.546662 3.2:-77232082 MS.gene06895:CDS
TATGCTCAGTGCTCTAGTAA+AGG 0.547463 3.2:-77231092 MS.gene06895:CDS
GGACATCCTTCATGCTCTGA+AGG 0.549506 3.2:+77230942 None:intergenic
GGCACACCTATTATTAATGA+GGG 0.549827 3.2:-77230992 MS.gene06895:CDS
ACACCACTGCTTGGACTTTG+GGG 0.550181 3.2:-77231048 MS.gene06895:CDS
TTCCCACATCCTCATAACCC+TGG 0.550647 3.2:+77230876 None:intergenic
ATGTTAAAGACACCACTGCT+TGG 0.550791 3.2:-77231057 MS.gene06895:CDS
CACATAATACATGGCCGCAA+TGG 0.551428 3.2:+77231597 None:intergenic
AGACACTGCAGCGAAGGCCC+AGG 0.552156 3.2:-77232076 MS.gene06895:CDS
GCCGTAACTGTTGGTGTAGT+CGG 0.552927 3.2:-77230332 MS.gene06895:CDS
ACTAGTTTCTGTCATCATGA+TGG 0.555623 3.2:-77230690 MS.gene06895:CDS
CTGTCAAGCACCCACAAAGA+AGG 0.556847 3.2:+77230597 None:intergenic
CTCCGTAGCATCCTCTCTGT+GGG 0.557611 3.2:+77230796 None:intergenic
CATTTGGCTCTATCTTGGAG+GGG 0.558186 3.2:-77231162 MS.gene06895:CDS
GAGGATCAAGATCTGGATGA+AGG 0.560543 3.2:-77231331 MS.gene06895:CDS
TATCCAAGAACTGGAGAATG+TGG 0.561174 3.2:+77229958 None:intergenic
AAGGGCTCCAATAGCTAGCA+TGG 0.562861 3.2:+77230451 None:intergenic
GAAGTTGGCTCCTTACATCC+AGG 0.563506 3.2:-77231575 MS.gene06895:CDS
TCCCACATCCTCATAACCCT+GGG 0.563687 3.2:+77230877 None:intergenic
AGCATAAGGAATCAAGATCT+GGG 0.564981 3.2:+77229983 None:intergenic
AGCGGGAATTGGTTCAGAGA+TGG 0.567281 3.2:-77232107 MS.gene06895:CDS
TTTCTTGGTCTCTCTTTCTG+GGG 0.568371 3.2:-77232220 MS.gene06895:CDS
CATAGCGATGGAAGTTACTC+AGG 0.569430 3.2:-77232331 None:intergenic
AATGTTGCTGAGAAAGGCTG+TGG 0.571738 3.2:-77230917 MS.gene06895:CDS
AGTTCTCCTTCAGAGCATGA+AGG 0.572114 3.2:-77230948 MS.gene06895:CDS
AGTTCAGGCCACTGTTTCTG+AGG 0.572502 3.2:+77231958 None:intergenic
GCAGAGGGACGAGTGCAGGA+AGG 0.572612 3.2:+77231380 None:intergenic
GAAACTTGTAAAATTCAGGC+AGG 0.572839 3.2:+77230396 None:intergenic
CAAGGATGAAAACAGAAAGC+GGG 0.572936 3.2:-77232124 MS.gene06895:CDS
GTTCTTGGATAGCATATACA+TGG 0.572950 3.2:-77229946 MS.gene06895:CDS
TGATTAAAGAATCTGCCGAA+TGG 0.574297 3.2:-77229680 MS.gene06895:CDS
CCAAACCAGATTGGAGACAG+AGG 0.578424 3.2:-77231201 MS.gene06895:CDS
CATATTCTGGGATCTTCCAA+GGG 0.579806 3.2:-77230025 MS.gene06895:CDS
TAATGCTCTCGAATTTGCGC+AGG 0.579901 3.2:-77231728 MS.gene06895:CDS
ACTCCGTAGCATCCTCTCTG+TGG 0.580534 3.2:+77230795 None:intergenic
CAAGTCAAAGCCTGATGTGT+GGG 0.580869 3.2:+77230094 None:intergenic
ATCCAAGAACTGGAGAATGT+GGG 0.582057 3.2:+77229959 None:intergenic
GGTACTAATTTGTCTGGAGA+AGG 0.583117 3.2:+77231139 None:intergenic
CAGGGCCTATCGCATAGGCA+AGG 0.584847 3.2:+77230432 None:intergenic
GGTACTCCTCAAAATTCTGA+AGG 0.586729 3.2:+77230363 None:intergenic
GGAGCCCTTGCCTATGCGAT+AGG 0.588549 3.2:-77230437 MS.gene06895:CDS
TGAATGTTTGGTCTCCATTG+CGG 0.588682 3.2:-77231611 MS.gene06895:CDS
AGCCAACTTCACATAATACA+TGG 0.590438 3.2:+77231588 None:intergenic
TCATAATCCCATCACAGTAA+GGG 0.590523 3.2:+77230276 None:intergenic
AGCACTGAGCATAAATGGTA+GGG 0.592192 3.2:+77231102 None:intergenic
AAGATCTGGATGAAGGTGCA+TGG 0.593145 3.2:-77231324 MS.gene06895:CDS
AAAATCAGGGCCTATCGCAT+AGG 0.593832 3.2:+77230427 None:intergenic
AGGGCCTATCGCATAGGCAA+GGG 0.594941 3.2:+77230433 None:intergenic
TTTAATCATATGATCATCTG+AGG 0.597486 3.2:+77229695 None:intergenic
GGCCATGTATTATGTGAAGT+TGG 0.601747 3.2:-77231590 MS.gene06895:CDS
ATTGTTATGAAAACAGCCAT+TGG 0.603401 3.2:-77229813 MS.gene06895:CDS
GAGAGCATTATACAATGCCC+TGG 0.604361 3.2:+77231741 None:intergenic
CCACTGCTTGGACTTTGGGG+CGG 0.604774 3.2:-77231045 MS.gene06895:CDS
CATTTCTACAAGCAAAGACC+CGG 0.606986 3.2:+77230492 None:intergenic
GCATGGAATATTGCAATGGC+AGG 0.607121 3.2:-77231307 MS.gene06895:CDS
CCGAGCGTCAAGTACAAGAG+AGG 0.607157 3.2:+77232026 None:intergenic
AAGCAGTGGTGTCTTTAACA+TGG 0.611461 3.2:+77231059 None:intergenic
GATAATGGGACTATTCATCC+GGG 0.613080 3.2:-77230510 MS.gene06895:CDS
CACCAATGCATGAAAACAAG+GGG 0.613111 3.2:+77230201 None:intergenic
CAAGTTTGTGCCGTAACTGT+TGG 0.613695 3.2:-77230341 MS.gene06895:CDS
TCACCAATGCATGAAAACAA+GGG 0.614256 3.2:+77230200 None:intergenic
GCAGGTATTTAGCAAAATCA+GGG 0.614526 3.2:+77230414 None:intergenic
CCAAGGATGAAAACAGAAAG+CGG 0.615724 3.2:-77232125 MS.gene06895:CDS
AAGCAAACATGCCTTAACCT+GGG 0.618785 3.2:+77232059 None:intergenic
AATATGTGGGTGATACCACT+GGG 0.618894 3.2:-77231441 MS.gene06895:CDS
CACCCACAGAGAGGATGCTA+CGG 0.620015 3.2:-77230798 MS.gene06895:CDS
TGCAAGAGAACATATTTGGT+AGG 0.622823 3.2:+77230545 None:intergenic
TAGAAATGCCACTGCCCATG+AGG 0.623921 3.2:-77230477 MS.gene06895:CDS
TCCAAGAACTGGAGAATGTG+GGG 0.625954 3.2:+77229960 None:intergenic
CCAAGTCAAAGCCTGATGTG+TGG 0.626187 3.2:+77230093 None:intergenic
CATATATAACATCACAGCAA+AGG 0.628146 3.2:-77231551 MS.gene06895:CDS
TAGATCTCCAACGACACCAA+TGG 0.633027 3.2:+77229797 None:intergenic
GAGAGGATGCTACGGAGTCA+CGG 0.633129 3.2:-77230790 MS.gene06895:CDS
GTAATGTTTCCAACAGCAGA+GGG 0.633616 3.2:+77231365 None:intergenic
GAGAGACCAAGAAACCAGGA+AGG 0.634178 3.2:+77232229 None:intergenic
GAAACTAGTTGCAACACCAA+AGG 0.635429 3.2:+77230704 None:intergenic
AAAGGCTGTTAGGAGTGATG+AGG 0.635593 3.2:-77231533 MS.gene06895:CDS
AAATGCCACTGCCCATGAGG+AGG 0.637700 3.2:-77230474 MS.gene06895:CDS
TCTTGATCAACAACCTCATG+GGG 0.640057 3.2:+77231844 None:intergenic
TGGAATATTGCAATGGCAGG+TGG 0.641007 3.2:-77231304 MS.gene06895:CDS
GGAGATCTAGCTGATACACT+TGG 0.641148 3.2:-77229783 MS.gene06895:CDS
TTGAGCTTCCTCAGAAACAG+TGG 0.646805 3.2:-77231966 MS.gene06895:CDS
TGTAGTCGGCGACATATGCA+GGG 0.652462 3.2:-77230318 MS.gene06895:CDS
GACTCTGGGGTATTTGTGTG+AGG 0.657648 3.2:-77231872 MS.gene06895:CDS
CAAACCAGATTGGAGACAGA+GGG 0.659105 3.2:-77231200 MS.gene06895:CDS
GCCCAGGGTTATGAGGATGT+GGG 0.661982 3.2:-77230878 MS.gene06895:CDS
TCAATGAAAGGCATTACAAG+TGG 0.666073 3.2:+77231235 None:intergenic
GATATCTTGGAAGAATATGT+GGG 0.670018 3.2:-77231454 MS.gene06895:CDS
ACCCTGGGCGAGAAAATACA+GGG 0.671132 3.2:+77230892 None:intergenic
CCGCCCCAAAGTCCAAGCAG+TGG 0.671300 3.2:+77231045 None:intergenic
GGTAGGGCGTGATTAACAAG+AGG 0.685210 3.2:+77231118 None:intergenic
ACCAATGCATGAAAACAAGG+GGG 0.694702 3.2:+77230202 None:intergenic
CCAATGCATGAAAACAAGGG+GGG 0.695534 3.2:+77230203 None:intergenic
AAGCAACTTTGGAGACTCTG+GGG 0.702950 3.2:-77231885 MS.gene06895:CDS
AGGTGCATGGAATATTGCAA+TGG 0.707284 3.2:-77231311 MS.gene06895:CDS
TAGTACGAGCAACTAAACCA+AGG 0.708913 3.2:+77231275 None:intergenic
TCTCACTGTCACCCACAGAG+AGG 0.716309 3.2:-77230807 MS.gene06895:CDS
CTTGATCAACAACCTCATGG+GGG 0.733599 3.2:+77231845 None:intergenic
AGGTATATCAGAGTCCCCAG+TGG 0.773955 3.2:+77231426 None:intergenic
ATATGTGGGTGATACCACTG+GGG 0.840024 3.2:-77231440 MS.gene06895:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTGCTATGAAAATTAAAT+TGG + chr3.2:77232083-77232102 None:intergenic 15.0%
!! TGCTTAATGAAATAAAAACA+AGG + chr3.2:77230565-77230584 None:intergenic 20.0%
!! TTTGATACTTAAAAATGCAT+TGG - chr3.2:77229817-77229836 MS.gene06895:CDS 20.0%
!!! CAGTAAGAATTTTATTTACT+TGG + chr3.2:77230150-77230169 None:intergenic 20.0%
! TCAAGAAACTTGTAAAATTC+AGG + chr3.2:77231579-77231598 None:intergenic 25.0%
! TGAACAATTTCCTGAAAAAA+GGG + chr3.2:77231135-77231154 None:intergenic 25.0%
! TTGAACAATTTCCTGAAAAA+AGG + chr3.2:77231136-77231155 None:intergenic 25.0%
! TTTAATCATATGATCATCTG+AGG + chr3.2:77232276-77232295 None:intergenic 25.0%
!! ACATTAACTCTTTGAGAAAT+GGG - chr3.2:77231910-77231929 MS.gene06895:CDS 25.0%
!! TACATTAACTCTTTGAGAAA+TGG - chr3.2:77231909-77231928 MS.gene06895:CDS 25.0%
!!! GAGAACTGTAATAATTTGTT+GGG + chr3.2:77231007-77231026 None:intergenic 25.0%
AAAATATTCCCTTACTGTGA+TGG - chr3.2:77231684-77231703 MS.gene06895:CDS 30.0%
AAATATTCCCTTACTGTGAT+GGG - chr3.2:77231685-77231704 MS.gene06895:CDS 30.0%
AACATTACTCAAACAAGAAG+AGG - chr3.2:77230618-77230637 MS.gene06895:CDS 30.0%
AATTGTACTCCAGAATTCAA+TGG + chr3.2:77230479-77230498 None:intergenic 30.0%
AGAATATTACCAAACCAGAT+TGG - chr3.2:77230758-77230777 MS.gene06895:CDS 30.0%
ATACTGCAAGAGAACATATT+TGG + chr3.2:77231430-77231449 None:intergenic 30.0%
ATTGTTATGAAAACAGCCAT+TGG - chr3.2:77232155-77232174 MS.gene06895:CDS 30.0%
CATATATAACATCACAGCAA+AGG - chr3.2:77230417-77230436 MS.gene06895:CDS 30.0%
GAAAAACAGAGTGAACTTAT+AGG - chr3.2:77231348-77231367 MS.gene06895:CDS 30.0%
GATATCTTGGAAGAATATGT+GGG - chr3.2:77230514-77230533 MS.gene06895:CDS 30.0%
GCATTTCCCTCATTAATAAT+AGG + chr3.2:77230985-77231004 None:intergenic 30.0%
GTAATATTCTCCTCAATGAA+AGG + chr3.2:77230748-77230767 None:intergenic 30.0%
TGATATCTTGGAAGAATATG+TGG - chr3.2:77230513-77230532 MS.gene06895:CDS 30.0%
TTATATATGTCCTGGATGTA+AGG + chr3.2:77230406-77230425 None:intergenic 30.0%
TTGATGAATTCTTAAACCCT+TGG + chr3.2:77231962-77231981 None:intergenic 30.0%
TTTCTTCACAGTTCAATTGT+TGG - chr3.2:77230955-77230974 MS.gene06895:CDS 30.0%
TTTGAGAAATGGGATATTAG+AGG - chr3.2:77231920-77231939 MS.gene06895:CDS 30.0%
! GGAGAACTGTAATAATTTGT+TGG + chr3.2:77231008-77231027 None:intergenic 30.0%
!! GGCTAATTTTAGCAATGATA+TGG - chr3.2:77230261-77230280 MS.gene06895:CDS 30.0%
AACAGATATAGCACGATTGA+TGG + chr3.2:77232324-77232343 None:intergenic 35.0%
AACTTATAGGCCTTCTTTGT+GGG - chr3.2:77231361-77231380 MS.gene06895:CDS 35.0%
AATAGTGATCCTATCAGTTC+AGG + chr3.2:77230028-77230047 None:intergenic 35.0%
ACAGTCATTATTCAGAAGCT+AGG - chr3.2:77231390-77231409 MS.gene06895:CDS 35.0%
ACTTGTAATGCCTTTCATTG+AGG - chr3.2:77230735-77230754 MS.gene06895:CDS 35.0%
AGCATAAGGAATCAAGATCT+GGG + chr3.2:77231988-77232007 None:intergenic 35.0%
AGCCAACTTCACATAATACA+TGG + chr3.2:77230383-77230402 None:intergenic 35.0%
ATCACCAATGCATGAAAACA+AGG + chr3.2:77231772-77231791 None:intergenic 35.0%
ATTCTTACTGCTGTAGTTCA+AGG - chr3.2:77230160-77230179 MS.gene06895:CDS 35.0%
CAAGTTGTTGCTAAAATTGC+TGG - chr3.2:77229977-77229996 MS.gene06895:CDS 35.0%
CAGTATGCTGATCAGATAAT+GGG - chr3.2:77231444-77231463 MS.gene06895:CDS 35.0%
CAGTCATTATTCAGAAGCTA+GGG - chr3.2:77231391-77231410 MS.gene06895:CDS 35.0%
CCTGAAAAAAGGGAGTTATA+GGG + chr3.2:77231125-77231144 None:intergenic 35.0%
CTGAAAAAAGGGAGTTATAG+GGG + chr3.2:77231124-77231143 None:intergenic 35.0%
CTGTGATGTTATATATGTCC+TGG + chr3.2:77230414-77230433 None:intergenic 35.0%
GAAACTTGTAAAATTCAGGC+AGG + chr3.2:77231575-77231594 None:intergenic 35.0%
GATTAAAGAATCTGCCGAAT+GGG - chr3.2:77232289-77232308 MS.gene06895:CDS 35.0%
GCAGGTATTTAGCAAAATCA+GGG + chr3.2:77231557-77231576 None:intergenic 35.0%
GGCACACCTATTATTAATGA+GGG - chr3.2:77230976-77230995 MS.gene06895:CDS 35.0%
GTTCTTGGATAGCATATACA+TGG - chr3.2:77232022-77232041 MS.gene06895:CDS 35.0%
TAAAAATGCATTGGATGCCA+AGG - chr3.2:77229826-77229845 MS.gene06895:intron 35.0%
TCACCAATGCATGAAAACAA+GGG + chr3.2:77231771-77231790 None:intergenic 35.0%
TCATAATCCCATCACAGTAA+GGG + chr3.2:77231695-77231714 None:intergenic 35.0%
TCCTGAAAAAAGGGAGTTAT+AGG + chr3.2:77231126-77231145 None:intergenic 35.0%
TGATGAAGAGACTGATATCT+TGG - chr3.2:77230501-77230520 MS.gene06895:CDS 35.0%
TGATTAAAGAATCTGCCGAA+TGG - chr3.2:77232288-77232307 MS.gene06895:CDS 35.0%
TGCAAGAGAACATATTTGGT+AGG + chr3.2:77231426-77231445 None:intergenic 35.0%
TGGCACACCTATTATTAATG+AGG - chr3.2:77230975-77230994 MS.gene06895:CDS 35.0%
TGTATATGCTATCCAAGAAC+TGG + chr3.2:77232022-77232041 None:intergenic 35.0%
TTGAATGCTCAATCCATTGA+CGG - chr3.2:77229665-77229684 MS.gene06895:CDS 35.0%
! ACTAGTTTCTGTCATCATGA+TGG - chr3.2:77231278-77231297 MS.gene06895:CDS 35.0%
! GATTGACCTTCAGAATTTTG+AGG - chr3.2:77231599-77231618 MS.gene06895:CDS 35.0%
! GGATATTAGAGGCATATTCT+GGG - chr3.2:77231931-77231950 MS.gene06895:CDS 35.0%
!! ACAAGAGGTACTAATTTGTC+TGG + chr3.2:77230838-77230857 None:intergenic 35.0%
!! AGATAATGGGACTATTCATC+CGG - chr3.2:77231457-77231476 MS.gene06895:CDS 35.0%
!! TCAATGAAAGGCATTACAAG+TGG + chr3.2:77230736-77230755 None:intergenic 35.0%
!!! CATTGACTTTTCTTACTGCA+GGG - chr3.2:77232127-77232146 MS.gene06895:CDS 35.0%
!!! TCATTGACTTTTCTTACTGC+AGG - chr3.2:77232126-77232145 MS.gene06895:CDS 35.0%
AACAGATGAAACAGCTCCTT+TGG - chr3.2:77231248-77231267 MS.gene06895:CDS 40.0%
AAGCAAACATGCCTTAACCT+GGG + chr3.2:77229912-77229931 None:intergenic 40.0%
AAGCAGTGGTGTCTTTAACA+TGG + chr3.2:77230912-77230931 None:intergenic 40.0%
AATATGTGGGTGATACCACT+GGG - chr3.2:77230527-77230546 MS.gene06895:CDS 40.0%
ACAAGAAGAGGATCAAGATC+TGG - chr3.2:77230630-77230649 MS.gene06895:CDS 40.0%
ACCAATGCATGAAAACAAGG+GGG + chr3.2:77231769-77231788 None:intergenic 40.0%
AGAAAGTCTTCGGCAATTTC+AGG - chr3.2:77229709-77229728 MS.gene06895:CDS 40.0%
AGCATGCTGAAGAAAGTCTT+CGG - chr3.2:77229699-77229718 MS.gene06895:CDS 40.0%
AGCCTTTCTCAGCAACATTA+GGG + chr3.2:77231050-77231069 None:intergenic 40.0%
AGGTGCATGGAATATTGCAA+TGG - chr3.2:77230657-77230676 MS.gene06895:CDS 40.0%
AGTAATGTTTCCAACAGCAG+AGG + chr3.2:77230607-77230626 None:intergenic 40.0%
ATCCAAGAACTGGAGAATGT+GGG + chr3.2:77232012-77232031 None:intergenic 40.0%
ATGTTAAAGACACCACTGCT+TGG - chr3.2:77230911-77230930 MS.gene06895:CDS 40.0%
CAAGGATGAAAACAGAAAGC+GGG - chr3.2:77229844-77229863 MS.gene06895:intron 40.0%
CACCAATGCATGAAAACAAG+GGG + chr3.2:77231770-77231789 None:intergenic 40.0%
CATTTCTACAAGCAAAGACC+CGG + chr3.2:77231479-77231498 None:intergenic 40.0%
CCAAGGATGAAAACAGAAAG+CGG - chr3.2:77229843-77229862 MS.gene06895:intron 40.0%
GAAACTAGTTGCAACACCAA+AGG + chr3.2:77231267-77231286 None:intergenic 40.0%
GAACTTATAGGCCTTCTTTG+TGG - chr3.2:77231360-77231379 MS.gene06895:CDS 40.0%
GAGCATAAGGAATCAAGATC+TGG + chr3.2:77231989-77232008 None:intergenic 40.0%
GCAGTATGCTGATCAGATAA+TGG - chr3.2:77231443-77231462 MS.gene06895:CDS 40.0%
GGCAGGTATTTAGCAAAATC+AGG + chr3.2:77231558-77231577 None:intergenic 40.0%
GGCCATGTATTATGTGAAGT+TGG - chr3.2:77230378-77230397 MS.gene06895:CDS 40.0%
GGTACTCCTCAAAATTCTGA+AGG + chr3.2:77231608-77231627 None:intergenic 40.0%
GGTGATATAGCACTAGCTAT+AGG - chr3.2:77231786-77231805 MS.gene06895:CDS 40.0%
GTAATGTTTCCAACAGCAGA+GGG + chr3.2:77230606-77230625 None:intergenic 40.0%
GTATCAAACCTGCCAACTTT+CGG + chr3.2:77229805-77229824 None:intergenic 40.0%
GTCATAATCCCATCACAGTA+AGG + chr3.2:77231696-77231715 None:intergenic 40.0%
GTCTTGATCAACAACCTCAT+GGG + chr3.2:77230128-77230147 None:intergenic 40.0%
GTGTCTTTAACATGGTTGCT+TGG + chr3.2:77230904-77230923 None:intergenic 40.0%
GTTTCTTGGTCTCTCTTTCT+GGG - chr3.2:77229747-77229766 MS.gene06895:CDS 40.0%
TACTCCAGAATTCAATGGCT+TGG + chr3.2:77230474-77230493 None:intergenic 40.0%
TAGTACGAGCAACTAAACCA+AGG + chr3.2:77230696-77230715 None:intergenic 40.0%
TATCCAAGAACTGGAGAATG+TGG + chr3.2:77232013-77232032 None:intergenic 40.0%
TATGCTCAGTGCTCTAGTAA+AGG - chr3.2:77230876-77230895 MS.gene06895:CDS 40.0%
TCATGTCAAGCAAGCAACTT+TGG - chr3.2:77230072-77230091 MS.gene06895:CDS 40.0%
TCTTGATCAACAACCTCATG+GGG + chr3.2:77230127-77230146 None:intergenic 40.0%
TGAAAACAGAAAGCGGGAAT+TGG - chr3.2:77229850-77229869 MS.gene06895:intron 40.0%
TGAATGTTTGGTCTCCATTG+CGG - chr3.2:77230357-77230376 MS.gene06895:CDS 40.0%
TTTCTTGGTCTCTCTTTCTG+GGG - chr3.2:77229748-77229767 MS.gene06895:CDS 40.0%
! AGCACTGAGCATAAATGGTA+GGG + chr3.2:77230869-77230888 None:intergenic 40.0%
! GCGAGACGTATTTTCAATTC+AGG + chr3.2:77230331-77230350 None:intergenic 40.0%
! GGGATATTAGAGGCATATTC+TGG - chr3.2:77231930-77231949 MS.gene06895:CDS 40.0%
! GGTACTAATTTGTCTGGAGA+AGG + chr3.2:77230832-77230851 None:intergenic 40.0%
! TCTCGCAGCTTTTGAATGTT+TGG - chr3.2:77230345-77230364 MS.gene06895:CDS 40.0%
!! ACTAGAGCACTGAGCATAAA+TGG + chr3.2:77230874-77230893 None:intergenic 40.0%
!! CATATTCTGGGATCTTCCAA+GGG - chr3.2:77231943-77231962 MS.gene06895:CDS 40.0%
!! GATAATGGGACTATTCATCC+GGG - chr3.2:77231458-77231477 MS.gene06895:CDS 40.0%
!! GTATGCATTTGGCTCTATCT+TGG - chr3.2:77230801-77230820 MS.gene06895:CDS 40.0%
!!! CCCTATAACTCCCTTTTTTC+AGG - chr3.2:77231122-77231141 MS.gene06895:CDS 40.0%
AAAATCAGGGCCTATCGCAT+AGG + chr3.2:77231544-77231563 None:intergenic 45.0%
AAACAGTGGCCTGAACTGAT+AGG - chr3.2:77230016-77230035 MS.gene06895:CDS 45.0%
AAAGGCTGTTAGGAGTGATG+AGG - chr3.2:77230435-77230454 MS.gene06895:CDS 45.0%
AATGTTGCTGAGAAAGGCTG+TGG - chr3.2:77231051-77231070 MS.gene06895:CDS 45.0%
ACATCACAGCAAAGGCTGTT+AGG - chr3.2:77230425-77230444 MS.gene06895:CDS 45.0%
AGTTCTCCTTCAGAGCATGA+AGG - chr3.2:77231020-77231039 MS.gene06895:CDS 45.0%
ATATGTGGGTGATACCACTG+GGG - chr3.2:77230528-77230547 MS.gene06895:CDS 45.0%
CAAACCAGATTGGAGACAGA+GGG - chr3.2:77230768-77230787 MS.gene06895:CDS 45.0%
CAACAGTTACGGCACAAACT+TGG + chr3.2:77231629-77231648 None:intergenic 45.0%
CAAGTCAAAGCCTGATGTGT+GGG + chr3.2:77231877-77231896 None:intergenic 45.0%
CAAGTTTGTGCCGTAACTGT+TGG - chr3.2:77231627-77231646 MS.gene06895:CDS 45.0%
CACATAATACATGGCCGCAA+TGG + chr3.2:77230374-77230393 None:intergenic 45.0%
CAGCCTTTCTCAGCAACATT+AGG + chr3.2:77231051-77231070 None:intergenic 45.0%
CCAATGCATGAAAACAAGGG+GGG + chr3.2:77231768-77231787 None:intergenic 45.0%
CTCTCCAAGCCATTGAATTC+TGG - chr3.2:77230467-77230486 MS.gene06895:CDS 45.0%
CTTACGTACAGTTCCGTCAA+TGG + chr3.2:77229681-77229700 None:intergenic 45.0%
CTTGATCAACAACCTCATGG+GGG + chr3.2:77230126-77230145 None:intergenic 45.0%
GAAAGAGAGACCAAGAAACC+AGG + chr3.2:77229746-77229765 None:intergenic 45.0%
GAAGCAAACATGCCTTAACC+TGG + chr3.2:77229913-77229932 None:intergenic 45.0%
GAATATGTGGGTGATACCAC+TGG - chr3.2:77230526-77230545 MS.gene06895:CDS 45.0%
GAGGATCAAGATCTGGATGA+AGG - chr3.2:77230637-77230656 MS.gene06895:CDS 45.0%
GATACACTTGGAAGCAATGC+TGG - chr3.2:77232197-77232216 MS.gene06895:CDS 45.0%
GCAAAACCTTCCTGGTTTCT+TGG - chr3.2:77229733-77229752 MS.gene06895:CDS 45.0%
GCATGGAATATTGCAATGGC+AGG - chr3.2:77230661-77230680 MS.gene06895:CDS 45.0%
GGAGATCTAGCTGATACACT+TGG - chr3.2:77232185-77232204 MS.gene06895:CDS 45.0%
GGTCTTGATCAACAACCTCA+TGG + chr3.2:77230129-77230148 None:intergenic 45.0%
GGTTTAGTTGCTCGTACTAC+TGG - chr3.2:77230697-77230716 MS.gene06895:CDS 45.0%
GGTTTCTTGGTCTCTCTTTC+TGG - chr3.2:77229746-77229765 MS.gene06895:CDS 45.0%
GTCCCTAATGTTGCTGAGAA+AGG - chr3.2:77231045-77231064 MS.gene06895:CDS 45.0%
TAATGCTCTCGAATTTGCGC+AGG - chr3.2:77230240-77230259 MS.gene06895:CDS 45.0%
TAGATCTCCAACGACACCAA+TGG + chr3.2:77232174-77232193 None:intergenic 45.0%
TCCAAGAACTGGAGAATGTG+GGG + chr3.2:77232011-77232030 None:intergenic 45.0%
TGGAATATTGCAATGGCAGG+TGG - chr3.2:77230664-77230683 MS.gene06895:CDS 45.0%
TTGAGCTTCCTCAGAAACAG+TGG - chr3.2:77230002-77230021 MS.gene06895:CDS 45.0%
TTTCAGGAGCAAAACCTTCC+TGG - chr3.2:77229725-77229744 MS.gene06895:CDS 45.0%
! AAGATCTGGATGAAGGTGCA+TGG - chr3.2:77230644-77230663 MS.gene06895:CDS 45.0%
! AAGCAACTTTGGAGACTCTG+GGG - chr3.2:77230083-77230102 MS.gene06895:CDS 45.0%
! CAAGCAACTTTGGAGACTCT+GGG - chr3.2:77230082-77230101 MS.gene06895:CDS 45.0%
! CCGCTTTCTGTTTTCATCCT+TGG + chr3.2:77229846-77229865 None:intergenic 45.0%
!! AAAACAGCCATTGGTGTCGT+TGG - chr3.2:77232164-77232183 MS.gene06895:CDS 45.0%
!! ACCAGTTGATAGCCGAAAGT+TGG - chr3.2:77229790-77229809 MS.gene06895:CDS 45.0%
!! CATTTGGCTCTATCTTGGAG+GGG - chr3.2:77230806-77230825 MS.gene06895:CDS 45.0%
!! GAGAGCATTATACAATGCCC+TGG + chr3.2:77230230-77230249 None:intergenic 45.0%
!! GAGCACTGAGCATAAATGGT+AGG + chr3.2:77230870-77230889 None:intergenic 45.0%
!! GCATATTCTGGGATCTTCCA+AGG - chr3.2:77231942-77231961 MS.gene06895:CDS 45.0%
!! GCATTTGGCTCTATCTTGGA+GGG - chr3.2:77230805-77230824 MS.gene06895:CDS 45.0%
!! TGCATTTGGCTCTATCTTGG+AGG - chr3.2:77230804-77230823 MS.gene06895:CDS 45.0%
AACCCTGGGCGAGAAAATAC+AGG + chr3.2:77231080-77231099 None:intergenic 50.0%
AAGGGCTCCAATAGCTAGCA+TGG + chr3.2:77231520-77231539 None:intergenic 50.0%
ACACCACTGCTTGGACTTTG+GGG - chr3.2:77230920-77230939 MS.gene06895:CDS 50.0%
ACCCTGGGCGAGAAAATACA+GGG + chr3.2:77231079-77231098 None:intergenic 50.0%
AGACACCACTGCTTGGACTT+TGG - chr3.2:77230918-77230937 MS.gene06895:CDS 50.0%
AGGTATATCAGAGTCCCCAG+TGG + chr3.2:77230545-77230564 None:intergenic 50.0%
CCAAACCAGATTGGAGACAG+AGG - chr3.2:77230767-77230786 MS.gene06895:CDS 50.0%
CCAAGTCAAAGCCTGATGTG+TGG + chr3.2:77231878-77231897 None:intergenic 50.0%
CCTCTCTTGTACTTGACGCT+CGG - chr3.2:77229942-77229961 MS.gene06895:CDS 50.0%
CCTCTGTCTCCAATCTGGTT+TGG + chr3.2:77230770-77230789 None:intergenic 50.0%
CTGTCAAGCACCCACAAAGA+AGG + chr3.2:77231374-77231393 None:intergenic 50.0%
GAAGCAGCGACGTATGCATT+TGG - chr3.2:77230790-77230809 MS.gene06895:CDS 50.0%
GACACCACTGCTTGGACTTT+GGG - chr3.2:77230919-77230938 MS.gene06895:CDS 50.0%
GAGAGACCAAGAAACCAGGA+AGG + chr3.2:77229742-77229761 None:intergenic 50.0%
GCCAACTTTCGGCTATCAAC+TGG + chr3.2:77229794-77229813 None:intergenic 50.0%
GCCGACTACACCAACAGTTA+CGG + chr3.2:77231640-77231659 None:intergenic 50.0%
GCCGTAACTGTTGGTGTAGT+CGG - chr3.2:77231636-77231655 MS.gene06895:CDS 50.0%
GCTTGACATGAGCAGGAACT+TGG + chr3.2:77230063-77230082 None:intergenic 50.0%
GGACATCCTTCATGCTCTGA+AGG + chr3.2:77231029-77231048 None:intergenic 50.0%
GGTAGGGCGTGATTAACAAG+AGG + chr3.2:77230853-77230872 None:intergenic 50.0%
GTCATTAGACACTGCAGCGA+AGG - chr3.2:77229886-77229905 MS.gene06895:intron 50.0%
GTTGCTTGCTTGACATGAGC+AGG + chr3.2:77230070-77230089 None:intergenic 50.0%
TAGAAATGCCACTGCCCATG+AGG - chr3.2:77231491-77231510 MS.gene06895:CDS 50.0%
TCCCACATCCTCATAACCCT+GGG + chr3.2:77231094-77231113 None:intergenic 50.0%
TCCCCACATTCTCCAGTTCT+TGG - chr3.2:77232007-77232026 MS.gene06895:CDS 50.0%
TCTGTGGGTGACAGTGAGAA+GGG + chr3.2:77231160-77231179 None:intergenic 50.0%
TGTAGTCGGCGACATATGCA+GGG - chr3.2:77231650-77231669 MS.gene06895:CDS 50.0%
TTCCCACATCCTCATAACCC+TGG + chr3.2:77231095-77231114 None:intergenic 50.0%
! AGCACGATTGATGGCCAACT+TGG + chr3.2:77232315-77232334 None:intergenic 50.0%
! AGCGGGAATTGGTTCAGAGA+TGG - chr3.2:77229861-77229880 MS.gene06895:intron 50.0%
! CCACACATCAGGCTTTGACT+TGG - chr3.2:77231875-77231894 MS.gene06895:CDS 50.0%
! GAAGTTGGCTCCTTACATCC+AGG - chr3.2:77230393-77230412 MS.gene06895:CDS 50.0%
! GCAAGCAACTTTGGAGACTC+TGG - chr3.2:77230081-77230100 MS.gene06895:CDS 50.0%
! TCAATGGCTTGGAGAGCAAC+AGG + chr3.2:77230463-77230482 None:intergenic 50.0%
! TGGAGAATGTGGGGAGCATA+AGG + chr3.2:77232002-77232021 None:intergenic 50.0%
! TTTTCTCGCCCAGGGTTATG+AGG - chr3.2:77231083-77231102 MS.gene06895:CDS 50.0%
!! AGTTCAGGCCACTGTTTCTG+AGG + chr3.2:77230013-77230032 None:intergenic 50.0%
!! GACTCTGGGGTATTTGTGTG+AGG - chr3.2:77230096-77230115 MS.gene06895:CDS 50.0%
!! GTTGATAGCCGAAAGTTGGC+AGG - chr3.2:77229794-77229813 MS.gene06895:CDS 50.0%
!!! CCCCCCTTGTTTTCATGCAT+TGG - chr3.2:77231765-77231784 MS.gene06895:CDS 50.0%
AAATGCCACTGCCCATGAGG+AGG - chr3.2:77231494-77231513 MS.gene06895:CDS 55.0%
ACAAGGGGGGCTTCACAGAA+CGG + chr3.2:77231755-77231774 None:intergenic 55.0%
ACTCCGTAGCATCCTCTCTG+TGG + chr3.2:77231176-77231195 None:intergenic 55.0%
AGCTAGCATGGCCTCCTCAT+GGG + chr3.2:77231508-77231527 None:intergenic 55.0%
AGGGCCTATCGCATAGGCAA+GGG + chr3.2:77231538-77231557 None:intergenic 55.0%
ATCTGCCGAATGGGCCAAGT+TGG - chr3.2:77232298-77232317 MS.gene06895:CDS 55.0%
ATGGCAGGTGGTACATGCCT+TGG - chr3.2:77230676-77230695 MS.gene06895:CDS 55.0%
CACCCACAGAGAGGATGCTA+CGG - chr3.2:77231170-77231189 MS.gene06895:CDS 55.0%
CCGAGCGTCAAGTACAAGAG+AGG + chr3.2:77229945-77229964 None:intergenic 55.0%
CTCCGTAGCATCCTCTCTGT+GGG + chr3.2:77231175-77231194 None:intergenic 55.0%
CTCTGTGGGTGACAGTGAGA+AGG + chr3.2:77231161-77231180 None:intergenic 55.0%
GAGAGGATGCTACGGAGTCA+CGG - chr3.2:77231178-77231197 MS.gene06895:CDS 55.0%
GAGATGTACGCCCACACATC+AGG - chr3.2:77231864-77231883 MS.gene06895:CDS 55.0%
GAGGAGGCCATGCTAGCTAT+TGG - chr3.2:77231510-77231529 MS.gene06895:CDS 55.0%
GATGGCCAACTTGGCCCATT+CGG + chr3.2:77232306-77232325 None:intergenic 55.0%
GCCCAGGGTTATGAGGATGT+GGG - chr3.2:77231090-77231109 MS.gene06895:CDS 55.0%
GCTTCCCTCTGTCTCCAATC+TGG + chr3.2:77230775-77230794 None:intergenic 55.0%
GTGTAGTCGGCGACATATGC+AGG - chr3.2:77231649-77231668 MS.gene06895:CDS 55.0%
TAGCTAGCATGGCCTCCTCA+TGG + chr3.2:77231509-77231528 None:intergenic 55.0%
TCTCACTGTCACCCACAGAG+AGG - chr3.2:77231161-77231180 MS.gene06895:CDS 55.0%
! AGCCCTGTATTTTCTCGCCC+AGG - chr3.2:77231074-77231093 MS.gene06895:CDS 55.0%
! GCCCTGTATTTTCTCGCCCA+GGG - chr3.2:77231075-77231094 MS.gene06895:CDS 55.0%
!! ATGTCAGACTTGCTGCTGCC+AGG - chr3.2:77230209-77230228 MS.gene06895:CDS 55.0%
!! CGACATATGCAGGGCATTGG+AGG - chr3.2:77231659-77231678 MS.gene06895:CDS 55.0%
!! TGTCAGACTTGCTGCTGCCA+GGG - chr3.2:77230210-77230229 MS.gene06895:CDS 55.0%
AACAGCAGAGGGACGAGTGC+AGG + chr3.2:77230595-77230614 None:intergenic 60.0%
CAGAGGGACGAGTGCAGGAA+GGG + chr3.2:77230590-77230609 None:intergenic 60.0%
CAGGGCCTATCGCATAGGCA+AGG + chr3.2:77231539-77231558 None:intergenic 60.0%
CGCCCAGGGTTATGAGGATG+TGG - chr3.2:77231089-77231108 MS.gene06895:CDS 60.0%
CGGCGACATATGCAGGGCAT+TGG - chr3.2:77231656-77231675 MS.gene06895:CDS 60.0%
GGAGCCCTTGCCTATGCGAT+AGG - chr3.2:77231531-77231550 MS.gene06895:CDS 60.0%
GTGTGAGGAAGTCCCCCATG+AGG - chr3.2:77230111-77230130 MS.gene06895:CDS 60.0%
TGCACTCGTCCCTCTGCTGT+TGG - chr3.2:77230594-77230613 MS.gene06895:CDS 60.0%
TGCAGCGAAGGCCCAGGTTA+AGG - chr3.2:77229898-77229917 MS.gene06895:intron 60.0%
! CCACTGCTTGGACTTTGGGG+CGG - chr3.2:77230923-77230942 MS.gene06895:CDS 60.0%
AGACACTGCAGCGAAGGCCC+AGG - chr3.2:77229892-77229911 MS.gene06895:intron 65.0%
CATGGCCTCCTCATGGGCAG+TGG + chr3.2:77231502-77231521 None:intergenic 65.0%
CCGCCCCAAAGTCCAAGCAG+TGG + chr3.2:77230926-77230945 None:intergenic 65.0%
GCAGAGGGACGAGTGCAGGA+AGG + chr3.2:77230591-77230610 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 77229644 77232346 77229644 ID=MS.gene06895
chr3.2 mRNA 77229644 77232346 77229644 ID=MS.gene06895.t1;Parent=MS.gene06895
chr3.2 exon 77229936 77232346 77229936 ID=MS.gene06895.t1.exon1;Parent=MS.gene06895.t1
chr3.2 CDS 77229936 77232346 77229936 ID=cds.MS.gene06895.t1;Parent=MS.gene06895.t1
chr3.2 exon 77229644 77229842 77229644 ID=MS.gene06895.t1.exon2;Parent=MS.gene06895.t1
chr3.2 CDS 77229644 77229842 77229644 ID=cds.MS.gene06895.t1;Parent=MS.gene06895.t1
Gene Sequence

>MS.gene06895

ATGGAAGTTACTCAGGCACTTTTGAATGCTCAATCCATTGACGGAACTGTACGTAAGCATGCTGAAGAAAGTCTTCGGCAATTTCAGGAGCAAAACCTTCCTGGTTTCTTGGTCTCTCTTTCTGGGGAGTTAGCAAGTGAAGATAAACCAGTTGATAGCCGAAAGTTGGCAGGTTTGATACTTAAAAATGCATTGGATGCCAAGGATGAAAACAGAAAGCGGGAATTGGTTCAGAGATGGTTGTCATTAGACACTGCAGCGAAGGCCCAGGTTAAGGCATGTTTGCTTCAAACACTCTCCTCTCTTGTACTTGACGCTCGGTCTACAGCAGCTCAAGTTGTTGCTAAAATTGCTGGAATTGAGCTTCCTCAGAAACAGTGGCCTGAACTGATAGGATCACTATTATCAAATATTCACCAAGTTCCTGCTCATGTCAAGCAAGCAACTTTGGAGACTCTGGGGTATTTGTGTGAGGAAGTCCCCCATGAGGTTGTTGATCAAGACCAAGTAAATAAAATTCTTACTGCTGTAGTTCAAGGTATGAACTCATCTGAAAAGAACAATGATGTCAGACTTGCTGCTGCCAGGGCATTGTATAATGCTCTCGAATTTGCGCAGGCTAATTTTAGCAATGATATGGAGCGTGAGTACATCATGAGAGTTGTTTGTGAGACAACTATGTCTCCTGAATTGAAAATACGTCTCGCAGCTTTTGAATGTTTGGTCTCCATTGCGGCCATGTATTATGTGAAGTTGGCTCCTTACATCCAGGACATATATAACATCACAGCAAAGGCTGTTAGGAGTGATGAGGAGCCTGTTGCTCTCCAAGCCATTGAATTCTGGAGTACAATTTGTGATGAAGAGACTGATATCTTGGAAGAATATGTGGGTGATACCACTGGGGACTCTGATATACCTTGTTTTTATTTCATTAAGCAAGCCCTTCCTGCACTCGTCCCTCTGCTGTTGGAAACATTACTCAAACAAGAAGAGGATCAAGATCTGGATGAAGGTGCATGGAATATTGCAATGGCAGGTGGTACATGCCTTGGTTTAGTTGCTCGTACTACTGGAGATGATATTGTGCCACTTGTAATGCCTTTCATTGAGGAGAATATTACCAAACCAGATTGGAGACAGAGGGAAGCAGCGACGTATGCATTTGGCTCTATCTTGGAGGGGCCTTCTCCAGACAAATTAGTACCTCTTGTTAATCACGCCCTACCATTTATGCTCAGTGCTCTAGTAAAGGATCCAAGCAACCATGTTAAAGACACCACTGCTTGGACTTTGGGGCGGATGTTTGAATTTCTTCACAGTTCAATTGTTGGCACACCTATTATTAATGAGGGAAATGCCCAACAAATTATTACAGTTCTCCTTCAGAGCATGAAGGATGTCCCTAATGTTGCTGAGAAAGGCTGTGGAGCCCTGTATTTTCTCGCCCAGGGTTATGAGGATGTGGGAATAACATCCCCTATAACTCCCTTTTTTCAGGAAATTGTTCAAGCCCTTCTCACTGTCACCCACAGAGAGGATGCTACGGAGTCACGGTTAAGAACTTCAGCATATGAAACATTGAATGAAGTAGTAAGATGTTCAACAGATGAAACAGCTCCTTTGGTGTTGCAACTAGTTTCTGTCATCATGATGGAGCTGCACAAATGTCTTGAAGCACAAAATCTTTCATCTGATGAAAGAGAAAAACAGAGTGAACTTATAGGCCTTCTTTGTGGGTGCTTGACAGTCATTATTCAGAAGCTAGGGTCTTCAGAACCTACCAAATATGTTCTCTTGCAGTATGCTGATCAGATAATGGGACTATTCATCCGGGTCTTTGCTTGTAGAAATGCCACTGCCCATGAGGAGGCCATGCTAGCTATTGGAGCCCTTGCCTATGCGATAGGCCCTGATTTTGCTAAATACCTGCCTGAATTTTACAAGTTTCTTGAGATTGACCTTCAGAATTTTGAGGAGTACCAAGTTTGTGCCGTAACTGTTGGTGTAGTCGGCGACATATGCAGGGCATTGGAGGATAAAATATTCCCTTACTGTGATGGGATTATGACACAGCTTCTCAAAAATTTGTCGAGTGATAACTTGCACCGTTCTGTGAAGCCCCCCTTGTTTTCATGCATTGGTGATATAGCACTAGCTATAGGAGACAACTTTGAGAAGTACTTAATGTATGCAATGAAGACACTACAAATTGCTGCAGAGATGTACGCCCACACATCAGGCTTTGACTTGGAAATGACAGAGTACATTAACTCTTTGAGAAATGGGATATTAGAGGCATATTCTGGGATCTTCCAAGGGTTTAAGAATTCATCAAAATCCCAGATCTTGATTCCTTATGCTCCCCACATTCTCCAGTTCTTGGATAGCATATACATGGAAAAAGACATGTGAGAAAGCAAAATAGTTCATTTTCCAATTTAATTTTCATAGCAATAATATATTCATTGTTTTAGTGACTTCATTGACTTTTCTTACTGCAGGGATGACATTGTTATGAAAACAGCCATTGGTGTCGTTGGAGATCTAGCTGATACACTTGGAAGCAATGCTGGTTCGTTAATTCAACAGTCTTTGTCAAGCACACAATTTTTGAATGAATGTCTGACCTCAGATGATCATATGATTAAAGAATCTGCCGAATGGGCCAAGTTGGCCATCAATCGTGCTATATCTGTTTGA
Protein sequence

>MS.gene06895.t1

MEVTQALLNAQSIDGTVRKHAEESLRQFQEQNLPGFLVSLSGELASEDKPVDSRKLAGLILKNALDAKDENRKRELVQRWLSLDTAAKAQVKACLLQTLSSLVLDARSTAAQVVAKIAGIELPQKQWPELIGSLLSNIHQVPAHVKQATLETLGYLCEEVPHEVVDQDQVNKILTAVVQGMNSSEKNNDVRLAAARALYNALEFAQANFSNDMEREYIMRVVCETTMSPELKIRLAAFECLVSIAAMYYVKLAPYIQDIYNITAKAVRSDEEPVALQAIEFWSTICDEETDILEEYVGDTTGDSDIPCFYFIKQALPALVPLLLETLLKQEEDQDLDEGAWNIAMAGGTCLGLVARTTGDDIVPLVMPFIEENITKPDWRQREAATYAFGSILEGPSPDKLVPLVNHALPFMLSALVKDPSNHVKDTTAWTLGRMFEFLHSSIVGTPIINEGNAQQIITVLLQSMKDVPNVAEKGCGALYFLAQGYEDVGITSPITPFFQEIVQALLTVTHREDATESRLRTSAYETLNEVVRCSTDETAPLVLQLVSVIMMELHKCLEAQNLSSDEREKQSELIGLLCGCLTVIIQKLGSSEPTKYVLLQYADQIMGLFIRVFACRNATAHEEAMLAIGALAYAIGPDFAKYLPEFYKFLEIDLQNFEEYQVCAVTVGVVGDICRALEDKIFPYCDGIMTQLLKNLSSDNLHRSVKPPLFSCIGDIALAIGDNFEKYLMYAMKTLQIAAEMYAHTSGFDLEMTEYINSLRNGILEAYSGIFQGFKNSSKSQILIPYAPHILQFLDSIYMEKDMDDIVMKTAIGVVGDLADTLGSNAGSLIQQSLSSTQFLNECLTSDDHMIKESAEWAKLAINRAISV