Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069025.t1 | AES79543.1 | 93.5 | 201 | 13 | 0 | 1 | 201 | 1 | 201 | 2.60E-98 | 368.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069025.t1 | Q8RX71 | 46.2 | 195 | 93 | 2 | 19 | 201 | 10 | 204 | 1.3e-37 | 157.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069025.t1 | G7KSC2 | 93.5 | 201 | 13 | 0 | 1 | 201 | 1 | 201 | 1.9e-98 | 368.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene069025 | 0.805985 | 1.02E-49 | -1.69E-46 |
| MS.gene04991 | MS.gene069025 | -0.818673 | 1.73E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene069025 | 0.804315 | 2.29E-49 | -1.69E-46 |
| MS.gene053494 | MS.gene069025 | 0.811886 | 5.59E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene069025 | 0.84831 | 6.65E-60 | -1.69E-46 |
| MS.gene055701 | MS.gene069025 | 0.802487 | 5.48E-49 | -1.69E-46 |
| MS.gene060940 | MS.gene069025 | 0.807607 | 4.65E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069025.t1 | MTR_7g069610 | 93.532 | 201 | 13 | 0 | 1 | 201 | 1 | 201 | 1.85e-138 | 387 |
| MS.gene069025.t1 | MTR_4g017810 | 56.650 | 203 | 68 | 3 | 1 | 201 | 1 | 185 | 1.08e-66 | 206 |
| MS.gene069025.t1 | MTR_1g101440 | 40.099 | 202 | 120 | 1 | 1 | 201 | 4 | 205 | 2.70e-44 | 151 |
| MS.gene069025.t1 | MTR_0086s0010 | 41.294 | 201 | 115 | 2 | 3 | 201 | 18 | 217 | 9.56e-44 | 150 |
| MS.gene069025.t1 | MTR_2g018860 | 36.667 | 180 | 112 | 2 | 19 | 198 | 30 | 207 | 5.51e-37 | 130 |
| MS.gene069025.t1 | MTR_4g102740 | 41.053 | 190 | 109 | 2 | 13 | 202 | 28 | 214 | 2.39e-36 | 129 |
| MS.gene069025.t1 | MTR_2g032910 | 96.226 | 53 | 2 | 0 | 132 | 184 | 1 | 53 | 6.10e-29 | 103 |
| MS.gene069025.t1 | MTR_2g018860 | 37.692 | 130 | 81 | 0 | 69 | 198 | 36 | 165 | 2.15e-24 | 96.3 |
| MS.gene069025.t1 | MTR_6g022040 | 43.220 | 118 | 59 | 2 | 10 | 123 | 23 | 136 | 1.28e-23 | 92.8 |
| MS.gene069025.t1 | MTR_6g022020 | 45.098 | 102 | 53 | 1 | 16 | 117 | 35 | 133 | 2.44e-23 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069025.t1 | AT3G51780 | 46.269 | 201 | 86 | 4 | 19 | 202 | 10 | 205 | 8.83e-51 | 166 |
| MS.gene069025.t1 | AT5G07220 | 39.109 | 202 | 118 | 3 | 1 | 201 | 4 | 201 | 8.96e-38 | 133 |
| MS.gene069025.t1 | AT5G52060 | 39.459 | 185 | 110 | 1 | 19 | 201 | 39 | 223 | 2.11e-36 | 130 |
| MS.gene069025.t1 | AT5G62100 | 35.385 | 195 | 120 | 3 | 10 | 202 | 6 | 196 | 7.96e-35 | 123 |
| MS.gene069025.t1 | AT5G62100 | 35.567 | 194 | 119 | 3 | 10 | 201 | 6 | 195 | 8.76e-35 | 123 |
| MS.gene069025.t1 | AT5G62100 | 35.602 | 191 | 121 | 1 | 16 | 206 | 12 | 200 | 5.29e-34 | 123 |
| MS.gene069025.t1 | AT5G62100 | 34.896 | 192 | 123 | 1 | 16 | 207 | 12 | 201 | 2.02e-33 | 122 |
| MS.gene069025.t1 | AT5G62100 | 36.301 | 146 | 87 | 3 | 10 | 153 | 6 | 147 | 2.91e-24 | 94.4 |
| MS.gene069025.t1 | AT5G62100 | 36.301 | 146 | 87 | 3 | 10 | 153 | 6 | 147 | 2.91e-24 | 94.4 |
| MS.gene069025.t1 | AT5G14360 | 46.602 | 103 | 47 | 2 | 17 | 117 | 46 | 142 | 7.97e-23 | 90.9 |
| MS.gene069025.t1 | AT5G40630 | 41.905 | 105 | 57 | 3 | 14 | 117 | 51 | 152 | 1.08e-19 | 82.8 |
Find 52 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCAAATACTCTTCTTTAA+AGG | 0.201663 | 7.2:-33923881 | MS.gene069025:CDS |
| AAGAAGAGTATTTGCTGTTC+AGG | 0.301501 | 7.2:+33923887 | None:intergenic |
| GCTGGAGCTGGATGGTATTA+AGG | 0.331947 | 7.2:-33923480 | MS.gene069025:CDS |
| AAACTGCTTGCACACAAAAC+TGG | 0.371537 | 7.2:-33923917 | MS.gene069025:CDS |
| AACACCGCCGCTTATTCTTC+CGG | 0.374973 | 7.2:-33925335 | MS.gene069025:CDS |
| TTCGTACAGACACGCGAATC+AGG | 0.397002 | 7.2:-33925257 | MS.gene069025:CDS |
| GCCTTGGATGTGGCTGTCAA+TGG | 0.409273 | 7.2:-33923563 | MS.gene069025:CDS |
| GTTGCTTATGAGGAAATTGC+TGG | 0.415619 | 7.2:-33923498 | MS.gene069025:CDS |
| AAATTCTTTGTCAGAAACCT+TGG | 0.460069 | 7.2:+33923535 | None:intergenic |
| CGGTGTCTCGCCGCCGAATG+AGG | 0.463239 | 7.2:-33925315 | MS.gene069025:CDS |
| TTACTACAGAGTTGCTTATG+AGG | 0.464936 | 7.2:-33923508 | MS.gene069025:CDS |
| GCAGGTGTTGGCCTTGGATG+TGG | 0.469671 | 7.2:-33923573 | MS.gene069025:intron |
| CATTCGATATCCGCCTCATT+CGG | 0.471255 | 7.2:+33925302 | None:intergenic |
| AAAGTAAAGCTTTGATCCAC+AGG | 0.480943 | 7.2:+33923169 | None:intergenic |
| CTTCTTTAAAGGAAAAGAAA+AGG | 0.482417 | 7.2:-33923870 | MS.gene069025:CDS |
| ATCGAATGGGAGATGCGTCC+CGG | 0.483739 | 7.2:-33925287 | MS.gene069025:CDS |
| GAAGAGAGTCTCACAGAAAG+AGG | 0.485676 | 7.2:+33925148 | None:intergenic |
| CTCATTCGGCGGCGAGACAC+CGG | 0.488256 | 7.2:+33925316 | None:intergenic |
| GAATAAGCGGCGGTGTTCAT+CGG | 0.491708 | 7.2:+33925341 | None:intergenic |
| TATGAGGAAATTGCTGGAGC+TGG | 0.493825 | 7.2:-33923492 | MS.gene069025:CDS |
| TTGGATGTGGCTGTCAATGG+AGG | 0.496098 | 7.2:-33923560 | MS.gene069025:CDS |
| TTTCAAGCTGTTGCTGTAGT+CGG | 0.509391 | 7.2:-33923722 | MS.gene069025:CDS |
| AGGTGGACAAGCTTTGTGAC+AGG | 0.514120 | 7.2:-33923694 | MS.gene069025:CDS |
| AATATTGTTGTTCAAGCCTG+TGG | 0.540349 | 7.2:-33923185 | MS.gene069025:CDS |
| TCACAGAAAGAGGATTGAGC+TGG | 0.549543 | 7.2:+33925158 | None:intergenic |
| CGAATGAGGCGGATATCGAA+TGG | 0.551079 | 7.2:-33925301 | MS.gene069025:CDS |
| GAAGAGAATTTGCACATGGA+AGG | 0.561882 | 7.2:-33923842 | MS.gene069025:CDS |
| GATGTTGATCATCGGTCCAT+CGG | 0.564771 | 7.2:+33925220 | None:intergenic |
| ATCAACATCAGTGTTGCGTA+TGG | 0.567834 | 7.2:-33925206 | MS.gene069025:CDS |
| GAATGAGGCGGATATCGAAT+GGG | 0.572222 | 7.2:-33925300 | MS.gene069025:CDS |
| GTCTGTACGAACATACCGCC+GGG | 0.573976 | 7.2:+33925269 | None:intergenic |
| TGCTGTAGTCGGATCAGAGG+TGG | 0.577219 | 7.2:-33923711 | MS.gene069025:CDS |
| TCGATATCCGCCTCATTCGG+CGG | 0.587767 | 7.2:+33925305 | None:intergenic |
| TGTCTCGCCGCCGAATGAGG+CGG | 0.594723 | 7.2:-33925312 | MS.gene069025:CDS |
| TATTGAGCCATAGTGCATCA+AGG | 0.595976 | 7.2:+33923204 | None:intergenic |
| GGTGGACAAGCTTTGTGACA+GGG | 0.600958 | 7.2:-33923693 | MS.gene069025:intron |
| TGGATGTGGCTGTCAATGGA+GGG | 0.601202 | 7.2:-33923559 | MS.gene069025:CDS |
| CTGGATGGTATTAAGGCTGA+AGG | 0.605506 | 7.2:-33923473 | MS.gene069025:CDS |
| TTTGCACATGGAAGGTGTCG+AGG | 0.606555 | 7.2:-33923834 | MS.gene069025:CDS |
| CGAGACACCGGAAGAATAAG+CGG | 0.607254 | 7.2:+33925328 | None:intergenic |
| GGCTGTCAATGGAGGGACCA+AGG | 0.612660 | 7.2:-33923552 | MS.gene069025:CDS |
| AGGAAATTGCTGGAGCTGGA+TGG | 0.613422 | 7.2:-33923488 | MS.gene069025:CDS |
| TCCATTGACAGCCACATCCA+AGG | 0.628433 | 7.2:+33923562 | None:intergenic |
| TGTTGCTGTAGTCGGATCAG+AGG | 0.628867 | 7.2:-33923714 | MS.gene069025:CDS |
| TGTCTGTACGAACATACCGC+CGG | 0.633853 | 7.2:+33925268 | None:intergenic |
| TGGCATAGAGAGTAATCTTG+AGG | 0.638606 | 7.2:-33923777 | MS.gene069025:CDS |
| TAAGTTGCAGAGAAAAGCTG+AGG | 0.643704 | 7.2:-33923444 | MS.gene069025:intron |
| GCAACACTGATGTTGATCAT+CGG | 0.648002 | 7.2:+33925212 | None:intergenic |
| GAATGAAGAGAATTTGCACA+TGG | 0.664413 | 7.2:-33923846 | MS.gene069025:CDS |
| GGTGACGATGATCATACCGA+TGG | 0.677266 | 7.2:-33925236 | MS.gene069025:CDS |
| GACACCGGAAGAATAAGCGG+CGG | 0.727415 | 7.2:+33925331 | None:intergenic |
| GAATGGGAGATGCGTCCCGG+CGG | 0.755454 | 7.2:-33925284 | MS.gene069025:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAATAATAATAT+GGG | + | chr7.2:33924843-33924862 | None:intergenic | 0.0% |
| !! | TAATAATAATAATAATAATA+TGG | + | chr7.2:33924844-33924863 | None:intergenic | 0.0% |
| !!! | TTATATGTTATATTTTCATA+CGG | - | chr7.2:33924376-33924395 | MS.gene069025:intron | 10.0% |
| !! | GAATGTATAATATGAAATTA+TGG | - | chr7.2:33923621-33923640 | MS.gene069025:intron | 15.0% |
| !! | TAAAAATTTACTTAGTTACT+TGG | - | chr7.2:33923523-33923542 | MS.gene069025:CDS | 15.0% |
| !!! | TAATTTAGTCTTTAATAACA+GGG | - | chr7.2:33924548-33924567 | MS.gene069025:intron | 15.0% |
| !!! | TATAACATATAATTTGCTTA+AGG | + | chr7.2:33924368-33924387 | None:intergenic | 15.0% |
| !!! | TATACATTCTTTTAATACAA+CGG | + | chr7.2:33923610-33923629 | None:intergenic | 15.0% |
| !!! | TTAATTTAGTCTTTAATAAC+AGG | - | chr7.2:33924547-33924566 | MS.gene069025:intron | 15.0% |
| !! | AATAATAATATGGGAAACAT+GGG | + | chr7.2:33924834-33924853 | None:intergenic | 20.0% |
| !! | CATTATAGAAACATAATAAC+TGG | - | chr7.2:33924866-33924885 | MS.gene069025:intron | 20.0% |
| !! | TAATAATAATATGGGAAACA+TGG | + | chr7.2:33924835-33924854 | None:intergenic | 20.0% |
| !!! | AAATGTTTTTGATAGTTGAA+AGG | - | chr7.2:33923944-33923963 | MS.gene069025:intron | 20.0% |
| !!! | AATGTTTTTGATAGTTGAAA+GGG | - | chr7.2:33923945-33923964 | MS.gene069025:intron | 20.0% |
| !!! | AATTTAGTCTTTAATAACAG+GGG | - | chr7.2:33924549-33924568 | MS.gene069025:intron | 20.0% |
| !!! | AGAAAATATTTTGTTTCCAT+TGG | - | chr7.2:33924511-33924530 | MS.gene069025:intron | 20.0% |
| !!! | ATGAATTTTAAATCATCACT+TGG | - | chr7.2:33925193-33925212 | MS.gene069025:CDS | 20.0% |
| ! | AACTTGTAATGACAATACTA+GGG | - | chr7.2:33923969-33923988 | MS.gene069025:intron | 25.0% |
| ! | AAGAAAGAAAGATTGATGAA+TGG | + | chr7.2:33924084-33924103 | None:intergenic | 25.0% |
| ! | AAGCTAATACATATTAGTGA+AGG | - | chr7.2:33924044-33924063 | MS.gene069025:intron | 25.0% |
| ! | AATTCTCGATGCAAATTAAA+TGG | + | chr7.2:33924217-33924236 | None:intergenic | 25.0% |
| ! | ATCTTGATATGGAATATGTT+TGG | - | chr7.2:33924437-33924456 | MS.gene069025:intron | 25.0% |
| ! | GTCAATATATCTAACCATTT+AGG | + | chr7.2:33923905-33923924 | None:intergenic | 25.0% |
| ! | TATGAAATTATGGATGAGTT+TGG | - | chr7.2:33923631-33923650 | MS.gene069025:intron | 25.0% |
| ! | TATTACTGTGTTACAAAAAG+TGG | - | chr7.2:33924186-33924205 | MS.gene069025:intron | 25.0% |
| ! | TCTTGATATGGAATATGTTT+GGG | - | chr7.2:33924438-33924457 | MS.gene069025:intron | 25.0% |
| ! | TTTACTTAGTTACTTGGATT+AGG | - | chr7.2:33923529-33923548 | MS.gene069025:CDS | 25.0% |
| !! | AGTTGATTAACTTGAAAACT+TGG | - | chr7.2:33924340-33924359 | MS.gene069025:intron | 25.0% |
| !! | CTTCTTTAAAGGAAAAGAAA+AGG | - | chr7.2:33924627-33924646 | MS.gene069025:intron | 25.0% |
| !! | CTTTATTTACGTATTAGTGT+AGG | - | chr7.2:33924246-33924265 | MS.gene069025:intron | 25.0% |
| !! | GTTGATTAACTTGAAAACTT+GGG | - | chr7.2:33924341-33924360 | MS.gene069025:intron | 25.0% |
| !! | TATAACTAGTTTACTCACTA+AGG | + | chr7.2:33924295-33924314 | None:intergenic | 25.0% |
| !! | TTCTCTCTATGTTGATATTT+TGG | - | chr7.2:33923369-33923388 | MS.gene069025:intron | 25.0% |
| !!! | ATGTTTTTGATAGTTGAAAG+GGG | - | chr7.2:33923946-33923965 | MS.gene069025:intron | 25.0% |
| !!! | GTTACTGATTTTAATTTTGC+AGG | - | chr7.2:33924906-33924925 | MS.gene069025:intron | 25.0% |
| AAAAGCTGAGGTAATGTTTA+TGG | - | chr7.2:33925065-33925084 | MS.gene069025:intron | 30.0% | |
| AAATTCTTTGTCAGAAACCT+TGG | + | chr7.2:33924965-33924984 | None:intergenic | 30.0% | |
| ATGGGATTGAATATTGCATT+AGG | - | chr7.2:33923561-33923580 | MS.gene069025:CDS | 30.0% | |
| CAGCAAATACTCTTCTTTAA+AGG | - | chr7.2:33924616-33924635 | MS.gene069025:intron | 30.0% | |
| CTTCTTCAACACTATTTGTT+CGG | + | chr7.2:33924108-33924127 | None:intergenic | 30.0% | |
| CTTGATATGGAATATGTTTG+GGG | - | chr7.2:33924439-33924458 | MS.gene069025:intron | 30.0% | |
| GAAATTTGAATTTCGAACTG+AGG | - | chr7.2:33924152-33924171 | MS.gene069025:intron | 30.0% | |
| GAACTTGTAATGACAATACT+AGG | - | chr7.2:33923968-33923987 | MS.gene069025:intron | 30.0% | |
| GCATCATTTGTATCTTGATA+TGG | - | chr7.2:33924426-33924445 | MS.gene069025:intron | 30.0% | |
| TAAGACAAAACACATACCAA+TGG | + | chr7.2:33924530-33924549 | None:intergenic | 30.0% | |
| TGACCTAGCATAAAAAGTAA+TGG | + | chr7.2:33925129-33925148 | None:intergenic | 30.0% | |
| TGTGATGATTGTGTTGAAAA+TGG | - | chr7.2:33923865-33923884 | MS.gene069025:CDS | 30.0% | |
| TTCTTCAACACTATTTGTTC+GGG | + | chr7.2:33924107-33924126 | None:intergenic | 30.0% | |
| ! | GTTGAATTTTCGTTTGATCT+TGG | - | chr7.2:33923399-33923418 | MS.gene069025:intron | 30.0% |
| ! | TGGATTAGGTTAATGATGAT+GGG | - | chr7.2:33923543-33923562 | MS.gene069025:CDS | 30.0% |
| ! | TTGCTATGATTTTTGTGAAG+TGG | - | chr7.2:33925221-33925240 | MS.gene069025:CDS | 30.0% |
| ! | TTGGATTAGGTTAATGATGA+TGG | - | chr7.2:33923542-33923561 | MS.gene069025:CDS | 30.0% |
| !! | ATATTGACTTCTTCTCTTTC+AGG | - | chr7.2:33923917-33923936 | MS.gene069025:CDS | 30.0% |
| !!! | GATTTTAATTTTGCAGGTGT+TGG | - | chr7.2:33924912-33924931 | MS.gene069025:intron | 30.0% |
| !!! | TTACTTTTTATGCTAGGTCA+TGG | - | chr7.2:33925129-33925148 | MS.gene069025:intron | 30.0% |
| CAAGGAAAACTGCTATAAAG+AGG | + | chr7.2:33925278-33925297 | None:intergenic | 35.0% | |
| CTCGATGCAAATTAAATGGA+GGG | + | chr7.2:33924213-33924232 | None:intergenic | 35.0% | |
| GAATGAAGAGAATTTGCACA+TGG | - | chr7.2:33924651-33924670 | MS.gene069025:intron | 35.0% | |
| GATGATTGTGTTGAAAATGG+TGG | - | chr7.2:33923868-33923887 | MS.gene069025:CDS | 35.0% | |
| GTACATGTGAGATTGATTGT+TGG | - | chr7.2:33923686-33923705 | MS.gene069025:intron | 35.0% | |
| TCGATGCAAATTAAATGGAG+GGG | + | chr7.2:33924212-33924231 | None:intergenic | 35.0% | |
| TCTCGATGCAAATTAAATGG+AGG | + | chr7.2:33924214-33924233 | None:intergenic | 35.0% | |
| TTACTACAGAGTTGCTTATG+AGG | - | chr7.2:33924989-33925008 | MS.gene069025:intron | 35.0% | |
| TTATGCTAGGTCATGGAAAA+TGG | - | chr7.2:33925136-33925155 | MS.gene069025:intron | 35.0% | |
| ! | AAAGTAAAGCTTTGATCCAC+AGG | + | chr7.2:33925331-33925350 | None:intergenic | 35.0% |
| ! | AATATTGTTGTTCAAGCCTG+TGG | - | chr7.2:33925312-33925331 | MS.gene069025:CDS | 35.0% |
| ! | CAGATCAAAGCTTTTGCTTT+TGG | - | chr7.2:33924687-33924706 | MS.gene069025:intron | 35.0% |
| ! | GACTTGAAAGCTTTAACTGT+CGG | - | chr7.2:33925102-33925121 | MS.gene069025:intron | 35.0% |
| !! | AAGAAGAGTATTTGCTGTTC+AGG | + | chr7.2:33924613-33924632 | None:intergenic | 35.0% |
| !! | ATCAAAGCTTTTGCTTTTGG+AGG | - | chr7.2:33924690-33924709 | MS.gene069025:intron | 35.0% |
| !!! | GGTCCATTACTTTTTATGCT+AGG | - | chr7.2:33925123-33925142 | MS.gene069025:intron | 35.0% |
| AAACTGCTTGCACACAAAAC+TGG | - | chr7.2:33924580-33924599 | MS.gene069025:intron | 40.0% | |
| AACTGAAAAACAGCAGCACA+TGG | + | chr7.2:33923743-33923762 | None:intergenic | 40.0% | |
| ATCAACATCAGTGTTGCGTA+TGG | - | chr7.2:33923291-33923310 | MS.gene069025:intron | 40.0% | |
| GAAGAGAATTTGCACATGGA+AGG | - | chr7.2:33924655-33924674 | MS.gene069025:intron | 40.0% | |
| GCAACACTGATGTTGATCAT+CGG | + | chr7.2:33923288-33923307 | None:intergenic | 40.0% | |
| GTTGCTTATGAGGAAATTGC+TGG | - | chr7.2:33924999-33925018 | MS.gene069025:intron | 40.0% | |
| TAAGTTGCAGAGAAAAGCTG+AGG | - | chr7.2:33925053-33925072 | MS.gene069025:intron | 40.0% | |
| TATTGAGCCATAGTGCATCA+AGG | + | chr7.2:33925296-33925315 | None:intergenic | 40.0% | |
| TGGACTTTGCTGATCCTAAA+TGG | - | chr7.2:33923888-33923907 | MS.gene069025:CDS | 40.0% | |
| TGGCATAGAGAGTAATCTTG+AGG | - | chr7.2:33924720-33924739 | MS.gene069025:intron | 40.0% | |
| TTAAAGAACTTAGCTCGCTC+AGG | + | chr7.2:33924016-33924035 | None:intergenic | 40.0% | |
| TTTCAAGCTGTTGCTGTAGT+CGG | - | chr7.2:33924775-33924794 | MS.gene069025:intron | 40.0% | |
| ! | CAGTTTTCCTTGATGCACTA+TGG | - | chr7.2:33925286-33925305 | MS.gene069025:CDS | 40.0% |
| ! | TGATTGTTGGAGAGAGCTTT+TGG | - | chr7.2:33923699-33923718 | MS.gene069025:CDS | 40.0% |
| CATTCGATATCCGCCTCATT+CGG | + | chr7.2:33923198-33923217 | None:intergenic | 45.0% | |
| CTGGATGGTATTAAGGCTGA+AGG | - | chr7.2:33925024-33925043 | MS.gene069025:intron | 45.0% | |
| GAAGAGAGTCTCACAGAAAG+AGG | + | chr7.2:33923352-33923371 | None:intergenic | 45.0% | |
| GAATGAGGCGGATATCGAAT+GGG | - | chr7.2:33923197-33923216 | MS.gene069025:CDS | 45.0% | |
| GATGTTGATCATCGGTCCAT+CGG | + | chr7.2:33923280-33923299 | None:intergenic | 45.0% | |
| TATGAGGAAATTGCTGGAGC+TGG | - | chr7.2:33925005-33925024 | MS.gene069025:intron | 45.0% | |
| TCACAGAAAGAGGATTGAGC+TGG | + | chr7.2:33923342-33923361 | None:intergenic | 45.0% | |
| TTCGAACTGAGGTGAACTGT+AGG | - | chr7.2:33924163-33924182 | MS.gene069025:intron | 45.0% | |
| !!! | AATTTTGCAGGTGTTGGCCT+TGG | - | chr7.2:33924918-33924937 | MS.gene069025:intron | 45.0% |
| AACACCGCCGCTTATTCTTC+CGG | - | chr7.2:33923162-33923181 | MS.gene069025:CDS | 50.0% | |
| AGGAAATTGCTGGAGCTGGA+TGG | - | chr7.2:33925009-33925028 | MS.gene069025:intron | 50.0% | |
| CGAATGAGGCGGATATCGAA+TGG | - | chr7.2:33923196-33923215 | MS.gene069025:CDS | 50.0% | |
| CGAGACACCGGAAGAATAAG+CGG | + | chr7.2:33923172-33923191 | None:intergenic | 50.0% | |
| GCTGGAGCTGGATGGTATTA+AGG | - | chr7.2:33925017-33925036 | MS.gene069025:intron | 50.0% | |
| GGTGACGATGATCATACCGA+TGG | - | chr7.2:33923261-33923280 | MS.gene069025:intron | 50.0% | |
| TCCATTGACAGCCACATCCA+AGG | + | chr7.2:33924938-33924957 | None:intergenic | 50.0% | |
| TGGATGTGGCTGTCAATGGA+GGG | - | chr7.2:33924938-33924957 | MS.gene069025:intron | 50.0% | |
| TGTCTGTACGAACATACCGC+CGG | + | chr7.2:33923232-33923251 | None:intergenic | 50.0% | |
| TGTTGCTGTAGTCGGATCAG+AGG | - | chr7.2:33924783-33924802 | MS.gene069025:intron | 50.0% | |
| TTCGTACAGACACGCGAATC+AGG | - | chr7.2:33923240-33923259 | MS.gene069025:intron | 50.0% | |
| TTGGATGTGGCTGTCAATGG+AGG | - | chr7.2:33924937-33924956 | MS.gene069025:intron | 50.0% | |
| ! | AGGTGGACAAGCTTTGTGAC+AGG | - | chr7.2:33924803-33924822 | MS.gene069025:intron | 50.0% |
| ! | GGTGGACAAGCTTTGTGACA+GGG | - | chr7.2:33924804-33924823 | MS.gene069025:intron | 50.0% |
| !! | TTGCTTTTGGAGGATGCTGC+TGG | - | chr7.2:33924700-33924719 | MS.gene069025:intron | 50.0% |
| !! | TTTGCACATGGAAGGTGTCG+AGG | - | chr7.2:33924663-33924682 | MS.gene069025:intron | 50.0% |
| ATCGAATGGGAGATGCGTCC+CGG | - | chr7.2:33923210-33923229 | MS.gene069025:CDS | 55.0% | |
| GACACCGGAAGAATAAGCGG+CGG | + | chr7.2:33923169-33923188 | None:intergenic | 55.0% | |
| GCCTTGGATGTGGCTGTCAA+TGG | - | chr7.2:33924934-33924953 | MS.gene069025:intron | 55.0% | |
| GTCTGTACGAACATACCGCC+GGG | + | chr7.2:33923231-33923250 | None:intergenic | 55.0% | |
| TCGATATCCGCCTCATTCGG+CGG | + | chr7.2:33923195-33923214 | None:intergenic | 55.0% | |
| TGCTGTAGTCGGATCAGAGG+TGG | - | chr7.2:33924786-33924805 | MS.gene069025:intron | 55.0% | |
| GGCTGTCAATGGAGGGACCA+AGG | - | chr7.2:33924945-33924964 | MS.gene069025:intron | 60.0% | |
| !! | GCAGGTGTTGGCCTTGGATG+TGG | - | chr7.2:33924924-33924943 | MS.gene069025:intron | 60.0% |
| CTCATTCGGCGGCGAGACAC+CGG | + | chr7.2:33923184-33923203 | None:intergenic | 65.0% | |
| GAATGGGAGATGCGTCCCGG+CGG | - | chr7.2:33923213-33923232 | MS.gene069025:intron | 65.0% | |
| TGTCTCGCCGCCGAATGAGG+CGG | - | chr7.2:33923185-33923204 | MS.gene069025:CDS | 65.0% | |
| CGGTGTCTCGCCGCCGAATG+AGG | - | chr7.2:33923182-33923201 | MS.gene069025:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 33923159 | 33925360 | 33923159 | ID=MS.gene069025 |
| chr7.2 | mRNA | 33923159 | 33925360 | 33923159 | ID=MS.gene069025.t1;Parent=MS.gene069025 |
| chr7.2 | exon | 33925162 | 33925360 | 33925162 | ID=MS.gene069025.t1.exon1;Parent=MS.gene069025.t1 |
| chr7.2 | CDS | 33925162 | 33925360 | 33925162 | ID=cds.MS.gene069025.t1;Parent=MS.gene069025.t1 |
| chr7.2 | exon | 33923694 | 33923950 | 33923694 | ID=MS.gene069025.t1.exon2;Parent=MS.gene069025.t1 |
| chr7.2 | CDS | 33923694 | 33923950 | 33923694 | ID=cds.MS.gene069025.t1;Parent=MS.gene069025.t1 |
| chr7.2 | exon | 33923445 | 33923591 | 33923445 | ID=MS.gene069025.t1.exon3;Parent=MS.gene069025.t1 |
| chr7.2 | CDS | 33923445 | 33923591 | 33923445 | ID=cds.MS.gene069025.t1;Parent=MS.gene069025.t1 |
| chr7.2 | exon | 33923159 | 33923230 | 33923159 | ID=MS.gene069025.t1.exon4;Parent=MS.gene069025.t1 |
| chr7.2 | CDS | 33923159 | 33923230 | 33923159 | ID=cds.MS.gene069025.t1;Parent=MS.gene069025.t1 |
| Gene Sequence |
| Protein sequence |
