Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069104.t1 | XP_003613054.1 | 90.9 | 176 | 14 | 1 | 3 | 176 | 53 | 228 | 2.00E-77 | 298.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069104.t1 | Q9FVC1 | 52.7 | 188 | 75 | 2 | 3 | 176 | 53 | 240 | 2.7e-38 | 159.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069104.t1 | G7JWF1 | 90.9 | 176 | 14 | 1 | 3 | 176 | 53 | 228 | 1.5e-77 | 298.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06011 | MS.gene069104 | 0.811967 | 5.37E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene069104 | MS.gene53154 | PPI |
| MS.gene069104 | MS.gene061528 | PPI |
| MS.gene069104 | MS.gene85927 | PPI |
| MS.gene069104 | MS.gene010053 | PPI |
| MS.gene78610 | MS.gene069104 | PPI |
| MS.gene069104 | MS.gene55353 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069104.t1 | MTR_5g032150 | 90.909 | 176 | 14 | 1 | 3 | 176 | 53 | 228 | 1.52e-110 | 314 |
| MS.gene069104.t1 | MTR_5g032150 | 94.611 | 167 | 7 | 1 | 12 | 176 | 1 | 167 | 1.22e-109 | 310 |
| MS.gene069104.t1 | MTR_5g032520 | 82.857 | 175 | 29 | 1 | 3 | 176 | 53 | 227 | 1.80e-100 | 289 |
| MS.gene069104.t1 | MTR_5g066180 | 45.402 | 174 | 90 | 5 | 3 | 174 | 53 | 223 | 2.29e-32 | 115 |
| MS.gene069104.t1 | MTR_4g093970 | 39.655 | 174 | 88 | 4 | 3 | 174 | 79 | 237 | 2.91e-22 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069104.t1 | AT2G22540 | 59.043 | 188 | 63 | 3 | 3 | 176 | 53 | 240 | 1.36e-66 | 203 |
| MS.gene069104.t1 | AT2G22540 | 59.043 | 188 | 63 | 3 | 3 | 176 | 53 | 240 | 1.36e-66 | 203 |
| MS.gene069104.t1 | AT2G22540 | 60.894 | 179 | 56 | 3 | 12 | 176 | 57 | 235 | 9.42e-66 | 201 |
| MS.gene069104.t1 | AT4G24540 | 48.000 | 175 | 77 | 6 | 3 | 173 | 53 | 217 | 3.02e-39 | 133 |
Find 49 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCCTTCAGCCGGTATA+TGG | 0.208025 | 5.4:+22282321 | None:intergenic |
| TTGGAGAGGTCACTTGAAAT+TGG | 0.219701 | 5.4:-22283811 | MS.gene069104:CDS |
| GAATATTTCTAACCTTTCTT+TGG | 0.260465 | 5.4:+22283639 | None:intergenic |
| CCCTCATCTGCCTTAATTGA+TGG | 0.266278 | 5.4:+22283875 | None:intergenic |
| TATCTGAACTCTCATAATCT+TGG | 0.352501 | 5.4:+22282528 | None:intergenic |
| CTAAGAAGAGCCATCAATTA+AGG | 0.355623 | 5.4:-22283885 | MS.gene069104:CDS |
| TGTGGAAGAATTACAACAAT+TGG | 0.373590 | 5.4:-22283830 | MS.gene069104:CDS |
| CTCAAAGAACCTCGCAAAGC+TGG | 0.379678 | 5.4:-22284145 | MS.gene069104:CDS |
| ATCTGAACTCTCATAATCTT+GGG | 0.383551 | 5.4:+22282529 | None:intergenic |
| AGAACCGTCTCTTGAGTTGC+AGG | 0.416179 | 5.4:-22284121 | MS.gene069104:intron |
| TGGAGAGGTCACTTGAAATT+GGG | 0.419481 | 5.4:-22283810 | MS.gene069104:CDS |
| TCAGATACATCGCTCAAGTT+GGG | 0.436087 | 5.4:-22282512 | MS.gene069104:CDS |
| CATTCCTTCAGCCGGTATAT+GGG | 0.442303 | 5.4:+22282322 | None:intergenic |
| ATGATGGATCATAAGGTTGC+GGG | 0.443250 | 5.4:-22282656 | MS.gene069104:intron |
| AGGTCACTTGAAATTGGGTT+GGG | 0.472406 | 5.4:-22283805 | MS.gene069104:CDS |
| TTCAGATACATCGCTCAAGT+TGG | 0.479254 | 5.4:-22282513 | MS.gene069104:CDS |
| GAGGTCACTTGAAATTGGGT+TGG | 0.488246 | 5.4:-22283806 | MS.gene069104:CDS |
| GATCAATGATCTCCAAAGAA+AGG | 0.499633 | 5.4:-22283651 | MS.gene069104:intron |
| AGATCTTGAAGGTTTGAATG+TGG | 0.507969 | 5.4:-22283848 | MS.gene069104:CDS |
| ATTTGCAGGCTCCCATATAC+CGG | 0.525181 | 5.4:-22282333 | MS.gene069104:intron |
| ATCATACATGTTGCTTTAGT+CGG | 0.530014 | 5.4:+22282844 | None:intergenic |
| ATAATCTTGGGGAGGACCAA+TGG | 0.530085 | 5.4:+22282541 | None:intergenic |
| ATGAGGGGAGAAGATCTTGA+AGG | 0.541103 | 5.4:-22283859 | MS.gene069104:CDS |
| CCATCAATTAAGGCAGATGA+GGG | 0.555256 | 5.4:-22283875 | MS.gene069104:CDS |
| TATGAGAATGTGGTTAATGA+AGG | 0.563013 | 5.4:-22282599 | MS.gene069104:CDS |
| TCAGGGAGAGAAGATCATGA+TGG | 0.564270 | 5.4:-22283675 | MS.gene069104:intron |
| ATGATTAACGACAGAATGGT+TGG | 0.571480 | 5.4:-22282632 | MS.gene069104:CDS |
| GCCATCAATTAAGGCAGATG+AGG | 0.573391 | 5.4:-22283876 | MS.gene069104:CDS |
| CACACAAACATTCCTTCAGC+CGG | 0.574541 | 5.4:+22282314 | None:intergenic |
| ACCAACGTTTACAACTCCAT+TGG | 0.576740 | 5.4:-22282557 | MS.gene069104:CDS |
| GGGCATGATTAACGACAGAA+TGG | 0.581587 | 5.4:-22282636 | MS.gene069104:CDS |
| CCTGCAGGGAAGGCAACTGA+TGG | 0.581631 | 5.4:-22282877 | MS.gene069104:intron |
| AACGTTGGTGACAGATTCTG+AGG | 0.592708 | 5.4:+22282571 | None:intergenic |
| CAGATACATCGCTCAAGTTG+GGG | 0.603531 | 5.4:-22282511 | MS.gene069104:intron |
| ACGGTTCTTCCAGCTTTGCG+AGG | 0.603660 | 5.4:+22284136 | None:intergenic |
| GCGTGAGGGAAATACTTGAA+AGG | 0.613182 | 5.4:-22284179 | MS.gene069104:CDS |
| TGTGTTATGATGAAGCGTGA+GGG | 0.617556 | 5.4:-22284193 | MS.gene069104:intron |
| TCTGAACTCTCATAATCTTG+GGG | 0.621502 | 5.4:+22282530 | None:intergenic |
| GGGCCGTGTAATAGAAAACA+AGG | 0.627922 | 5.4:-22283785 | MS.gene069104:intron |
| AAGAATTACAACAATTGGAG+AGG | 0.631162 | 5.4:-22283825 | MS.gene069104:CDS |
| GGCTCCCATATACCGGCTGA+AGG | 0.633026 | 5.4:-22282326 | None:intergenic |
| ATTAACGACAGAATGGTTGG+AGG | 0.640229 | 5.4:-22282629 | MS.gene069104:CDS |
| CAACTGTTCTAGATTGAGCA+AGG | 0.640451 | 5.4:-22283914 | MS.gene069104:CDS |
| CCAACCTGCAACTCAAGAGA+CGG | 0.649927 | 5.4:+22284117 | None:intergenic |
| ACCAATGGAGTTGTAAACGT+TGG | 0.652128 | 5.4:+22282556 | None:intergenic |
| AGGTGATGAATATGAGAATG+TGG | 0.655081 | 5.4:-22282609 | MS.gene069104:CDS |
| GAACTCTCATAATCTTGGGG+AGG | 0.658116 | 5.4:+22282533 | None:intergenic |
| TTTATATAGCTAATGTTACA+CGG | 0.681862 | 5.4:-22284635 | MS.gene069104:intron |
| CATCAATTAAGGCAGATGAG+GGG | 0.712596 | 5.4:-22283874 | MS.gene069104:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACAAAAGTTTAAAAAT+AGG | - | chr5.4:22283620-22283639 | MS.gene069104:intron | 10.0% |
| !! | TGTATTTGTAAAAAAAAAAT+TGG | - | chr5.4:22283653-22283672 | MS.gene069104:CDS | 10.0% |
| !!! | TATTTTTAAACTTTTGTTAT+TGG | + | chr5.4:22283621-22283640 | None:intergenic | 10.0% |
| !! | AAAAAATTACTTGTATATGA+TGG | - | chr5.4:22284302-22284321 | MS.gene069104:intron | 15.0% |
| !! | AAAAATATCATGCAAATATT+GGG | + | chr5.4:22284250-22284269 | None:intergenic | 15.0% |
| !! | GACTAAAATTTAATTAGATA+GGG | - | chr5.4:22283389-22283408 | MS.gene069104:intron | 15.0% |
| !! | TAAAAATATCATGCAAATAT+TGG | + | chr5.4:22284251-22284270 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAAAAGTACTAGT+AGG | + | chr5.4:22283227-22283246 | None:intergenic | 15.0% |
| !!! | AAAATATTGTTTTGTTTTTC+AGG | - | chr5.4:22283281-22283300 | MS.gene069104:intron | 15.0% |
| !!! | AAATATTGTTTTGTTTTTCA+GGG | - | chr5.4:22283282-22283301 | MS.gene069104:intron | 15.0% |
| !!! | AAGGAAAAAAAAATAGATTT+TGG | - | chr5.4:22282484-22282503 | MS.gene069104:intron | 15.0% |
| !!! | AATGTTTTATTTGTTCATTT+TGG | + | chr5.4:22282945-22282964 | None:intergenic | 15.0% |
| !!! | ACTTTTACTAAAAATTGTAA+GGG | - | chr5.4:22283530-22283549 | MS.gene069104:intron | 15.0% |
| !!! | ATCATTCATTGTTATTTATT+TGG | - | chr5.4:22282738-22282757 | MS.gene069104:intron | 15.0% |
| !!! | TACTTTTACTAAAAATTGTA+AGG | - | chr5.4:22283529-22283548 | MS.gene069104:intron | 15.0% |
| !!! | TTTTTTTTTAACAATCAAAG+TGG | + | chr5.4:22283500-22283519 | None:intergenic | 15.0% |
| !! | AAATTAATTGTTGTCATGTT+GGG | - | chr5.4:22282371-22282390 | MS.gene069104:intron | 20.0% |
| !! | ACACAATTTAATGTATGAAT+TGG | + | chr5.4:22283593-22283612 | None:intergenic | 20.0% |
| !! | ACTCAACATGTTATATTAAT+TGG | - | chr5.4:22283364-22283383 | MS.gene069104:intron | 20.0% |
| !! | CGACTAAAATTTAATTAGAT+AGG | - | chr5.4:22283388-22283407 | MS.gene069104:intron | 20.0% |
| !! | TAAATTAATTGTTGTCATGT+TGG | - | chr5.4:22282370-22282389 | MS.gene069104:intron | 20.0% |
| !! | TAAGTGAACTAATAATAATG+TGG | + | chr5.4:22284506-22284525 | None:intergenic | 20.0% |
| !! | TTATTTGGTATAATTTGACT+TGG | - | chr5.4:22282753-22282772 | MS.gene069104:intron | 20.0% |
| !! | TTTATATAGCTAATGTTACA+CGG | - | chr5.4:22282339-22282358 | MS.gene069104:intron | 20.0% |
| !!! | AATGTAGAATTTCTTTTTGA+AGG | - | chr5.4:22284543-22284562 | MS.gene069104:intron | 20.0% |
| !!! | AATTATGCTTAGTTTTGTAT+TGG | - | chr5.4:22283972-22283991 | MS.gene069104:intron | 20.0% |
| !!! | AGGAATATCTTTTTATTTTG+AGG | - | chr5.4:22282517-22282536 | MS.gene069104:CDS | 20.0% |
| !!! | GATCTTTTTTTTAACAAGAT+GGG | - | chr5.4:22282548-22282567 | MS.gene069104:CDS | 20.0% |
| !!! | TGATCTTTTTTTTAACAAGA+TGG | - | chr5.4:22282547-22282566 | MS.gene069104:CDS | 20.0% |
| ! | AATTAATTGTTGTCATGTTG+GGG | - | chr5.4:22282372-22282391 | MS.gene069104:intron | 25.0% |
| ! | GAAGCTAATTTAGATATATG+TGG | + | chr5.4:22284052-22284071 | None:intergenic | 25.0% |
| ! | TCAAAAAAGTTCCAATCAAA+CGG | - | chr5.4:22282687-22282706 | MS.gene069104:intron | 25.0% |
| ! | TTCACAAATCTTAATTCAAC+TGG | - | chr5.4:22283764-22283783 | MS.gene069104:intron | 25.0% |
| !! | GAATATTTCTAACCTTTCTT+TGG | + | chr5.4:22283338-22283357 | None:intergenic | 25.0% |
| !! | GACGTCAATATTAACAATTT+TGG | + | chr5.4:22283795-22283814 | None:intergenic | 25.0% |
| !!! | AGATTTGTGAACAACTTTTT+TGG | + | chr5.4:22283755-22283774 | None:intergenic | 25.0% |
| !!! | TAGATTTTGGAAAAGCTATT+AGG | - | chr5.4:22282497-22282516 | MS.gene069104:intron | 25.0% |
| AAGAATTACAACAATTGGAG+AGG | - | chr5.4:22283149-22283168 | MS.gene069104:intron | 30.0% | |
| ATCTGAACTCTCATAATCTT+GGG | + | chr5.4:22284448-22284467 | None:intergenic | 30.0% | |
| ATTTAATTAGATAGGGTCGA+TGG | - | chr5.4:22283396-22283415 | MS.gene069104:intron | 30.0% | |
| CAAAAAAGTTCCAATCAAAC+GGG | - | chr5.4:22282688-22282707 | MS.gene069104:intron | 30.0% | |
| TATCTGAACTCTCATAATCT+TGG | + | chr5.4:22284449-22284468 | None:intergenic | 30.0% | |
| TATGAGAATGTGGTTAATGA+AGG | - | chr5.4:22284375-22284394 | MS.gene069104:intron | 30.0% | |
| TCTAAAAAATGTTCCAAGGA+TGG | + | chr5.4:22283557-22283576 | None:intergenic | 30.0% | |
| TGTGGAAGAATTACAACAAT+TGG | - | chr5.4:22283144-22283163 | MS.gene069104:intron | 30.0% | |
| ! | CTTCTAAAAACAAAGAACAC+AGG | + | chr5.4:22282467-22282486 | None:intergenic | 30.0% |
| !! | ATCATACATGTTGCTTTAGT+CGG | + | chr5.4:22284133-22284152 | None:intergenic | 30.0% |
| !! | CTTGTATATGATGGATCATA+AGG | - | chr5.4:22284311-22284330 | MS.gene069104:intron | 30.0% |
| !!! | AGACCTTGTTTTCTATTACA+CGG | + | chr5.4:22283195-22283214 | None:intergenic | 30.0% |
| !!! | ATCCTTGGAACATTTTTTAG+AGG | - | chr5.4:22283556-22283575 | MS.gene069104:intron | 30.0% |
| !!! | CTGTGTTCTTTGTTTTTAGA+AGG | - | chr5.4:22282465-22282484 | MS.gene069104:intron | 30.0% |
| !!! | CTGTTGTTTTAGAAGATAGA+TGG | + | chr5.4:22283885-22283904 | None:intergenic | 30.0% |
| !!! | TTTGTGAACAACTTTTTTGG+TGG | + | chr5.4:22283752-22283771 | None:intergenic | 30.0% |
| AAAATTCACACACACAAGTG+GGG | + | chr5.4:22283844-22283863 | None:intergenic | 35.0% | |
| AGATCTTGAAGGTTTGAATG+TGG | - | chr5.4:22283126-22283145 | MS.gene069104:intron | 35.0% | |
| AGGTGATGAATATGAGAATG+TGG | - | chr5.4:22284365-22284384 | MS.gene069104:intron | 35.0% | |
| ATGATTAACGACAGAATGGT+TGG | - | chr5.4:22284342-22284361 | MS.gene069104:intron | 35.0% | |
| CATGATCGATGTCAACTTAA+GGG | + | chr5.4:22282714-22282733 | None:intergenic | 35.0% | |
| CTAAGAAGAGCCATCAATTA+AGG | - | chr5.4:22283089-22283108 | MS.gene069104:intron | 35.0% | |
| GAAAATTCACACACACAAGT+GGG | + | chr5.4:22283845-22283864 | None:intergenic | 35.0% | |
| GATCAATGATCTCCAAAGAA+AGG | - | chr5.4:22283323-22283342 | MS.gene069104:intron | 35.0% | |
| GTTCAGTAAATAAGGGTTGT+AGG | + | chr5.4:22284078-22284097 | None:intergenic | 35.0% | |
| TCTGAACTCTCATAATCTTG+GGG | + | chr5.4:22284447-22284466 | None:intergenic | 35.0% | |
| TGAAAATTCACACACACAAG+TGG | + | chr5.4:22283846-22283865 | None:intergenic | 35.0% | |
| ! | GACCTCTAAAAAATGTTCCA+AGG | + | chr5.4:22283561-22283580 | None:intergenic | 35.0% |
| !! | GTGTGTTTGAGTTTTCTAGT+CGG | - | chr5.4:22283708-22283727 | MS.gene069104:intron | 35.0% |
| !! | TATGATGGATCATAAGGTTG+CGG | - | chr5.4:22284317-22284336 | MS.gene069104:intron | 35.0% |
| AAATTGTAAGGGTCCATCCT+TGG | - | chr5.4:22283541-22283560 | MS.gene069104:intron | 40.0% | |
| ACCAACGTTTACAACTCCAT+TGG | - | chr5.4:22284417-22284436 | MS.gene069104:intron | 40.0% | |
| ACCAATGGAGTTGTAAACGT+TGG | + | chr5.4:22284421-22284440 | None:intergenic | 40.0% | |
| AGGTCACTTGAAATTGGGTT+GGG | - | chr5.4:22283169-22283188 | MS.gene069104:intron | 40.0% | |
| ATTAACGACAGAATGGTTGG+AGG | - | chr5.4:22284345-22284364 | MS.gene069104:intron | 40.0% | |
| CATCAATTAAGGCAGATGAG+GGG | - | chr5.4:22283100-22283119 | MS.gene069104:intron | 40.0% | |
| CCATCAATTAAGGCAGATGA+GGG | - | chr5.4:22283099-22283118 | MS.gene069104:intron | 40.0% | |
| CCTGCAGGTTCAGTAAATAA+GGG | + | chr5.4:22284085-22284104 | None:intergenic | 40.0% | |
| CGCTTTCATGTACTATTTGC+AGG | - | chr5.4:22284627-22284646 | MS.gene069104:intron | 40.0% | |
| GCATGATCGATGTCAACTTA+AGG | + | chr5.4:22282715-22282734 | None:intergenic | 40.0% | |
| TAATTAGATAGGGTCGATGG+AGG | - | chr5.4:22283399-22283418 | MS.gene069104:intron | 40.0% | |
| TCAGATACATCGCTCAAGTT+GGG | - | chr5.4:22284462-22284481 | MS.gene069104:intron | 40.0% | |
| TGGAGAGGTCACTTGAAATT+GGG | - | chr5.4:22283164-22283183 | MS.gene069104:intron | 40.0% | |
| TGTGTTATGATGAAGCGTGA+GGG | - | chr5.4:22282781-22282800 | MS.gene069104:intron | 40.0% | |
| TTCAGATACATCGCTCAAGT+TGG | - | chr5.4:22284461-22284480 | MS.gene069104:intron | 40.0% | |
| TTGGAGAGGTCACTTGAAAT+TGG | - | chr5.4:22283163-22283182 | MS.gene069104:intron | 40.0% | |
| TTGTGTTATGATGAAGCGTG+AGG | - | chr5.4:22282780-22282799 | MS.gene069104:intron | 40.0% | |
| ! | CAACTGTTCTAGATTGAGCA+AGG | - | chr5.4:22283060-22283079 | MS.gene069104:intron | 40.0% |
| ! | CCTTATTTACTGAACCTGCA+GGG | - | chr5.4:22284083-22284102 | MS.gene069104:intron | 40.0% |
| !! | ATGATGGATCATAAGGTTGC+GGG | - | chr5.4:22284318-22284337 | MS.gene069104:intron | 40.0% |
| AACTTAAGGGCCCGTTTGAT+TGG | + | chr5.4:22282701-22282720 | None:intergenic | 45.0% | |
| ATAATCTTGGGGAGGACCAA+TGG | + | chr5.4:22284436-22284455 | None:intergenic | 45.0% | |
| ATGAGGGGAGAAGATCTTGA+AGG | - | chr5.4:22283115-22283134 | MS.gene069104:intron | 45.0% | |
| ATTTACTGAACCTGCAGGGA+AGG | - | chr5.4:22284087-22284106 | MS.gene069104:intron | 45.0% | |
| ATTTGCAGGCTCCCATATAC+CGG | - | chr5.4:22284641-22284660 | MS.gene069104:CDS | 45.0% | |
| CCCTCATCTGCCTTAATTGA+TGG | + | chr5.4:22283102-22283121 | None:intergenic | 45.0% | |
| CCCTGCAGGTTCAGTAAATA+AGG | + | chr5.4:22284086-22284105 | None:intergenic | 45.0% | |
| GAACTCTCATAATCTTGGGG+AGG | + | chr5.4:22284444-22284463 | None:intergenic | 45.0% | |
| GAGGTCACTTGAAATTGGGT+TGG | - | chr5.4:22283168-22283187 | MS.gene069104:intron | 45.0% | |
| GCCATCAATTAAGGCAGATG+AGG | - | chr5.4:22283098-22283117 | MS.gene069104:intron | 45.0% | |
| GCGTGAGGGAAATACTTGAA+AGG | - | chr5.4:22282795-22282814 | MS.gene069104:intron | 45.0% | |
| GGGCATGATTAACGACAGAA+TGG | - | chr5.4:22284338-22284357 | MS.gene069104:intron | 45.0% | |
| GGGCCGTGTAATAGAAAACA+AGG | - | chr5.4:22283189-22283208 | MS.gene069104:intron | 45.0% | |
| TCAGGGAGAGAAGATCATGA+TGG | - | chr5.4:22283299-22283318 | MS.gene069104:intron | 45.0% | |
| ! | CAGATACATCGCTCAAGTTG+GGG | - | chr5.4:22284463-22284482 | MS.gene069104:intron | 45.0% |
| ! | CCCTTATTTACTGAACCTGC+AGG | - | chr5.4:22284082-22284101 | MS.gene069104:intron | 45.0% |
| !! | AACGTTGGTGACAGATTCTG+AGG | + | chr5.4:22284406-22284425 | None:intergenic | 45.0% |
| ACACACAAGTGGGGAATCTC+TGG | + | chr5.4:22283835-22283854 | None:intergenic | 50.0% | |
| CCAACCTGCAACTCAAGAGA+CGG | + | chr5.4:22282860-22282879 | None:intergenic | 50.0% | |
| CTCAAAGAACCTCGCAAAGC+TGG | - | chr5.4:22282829-22282848 | MS.gene069104:intron | 50.0% | |
| ! | AGAACCGTCTCTTGAGTTGC+AGG | - | chr5.4:22282853-22282872 | MS.gene069104:CDS | 50.0% |
| !! | ATACATCGCTCAAGTTGGGG+TGG | - | chr5.4:22284466-22284485 | MS.gene069104:intron | 50.0% |
| !! | TACATCGCTCAAGTTGGGGT+GGG | - | chr5.4:22284467-22284486 | MS.gene069104:intron | 50.0% |
| ACGGTTCTTCCAGCTTTGCG+AGG | + | chr5.4:22282841-22282860 | None:intergenic | 55.0% | |
| ! | CCGTCTCTTGAGTTGCAGGT+TGG | - | chr5.4:22282857-22282876 | MS.gene069104:CDS | 55.0% |
| CCATCAGTTGCCTTCCCTGC+AGG | + | chr5.4:22284100-22284119 | None:intergenic | 60.0% | |
| CCTGCAGGGAAGGCAACTGA+TGG | - | chr5.4:22284097-22284116 | MS.gene069104:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 22282329 | 22284667 | 22282329 | ID=MS.gene069104 |
| chr5.4 | mRNA | 22282329 | 22284667 | 22282329 | ID=MS.gene069104.t1;Parent=MS.gene069104 |
| chr5.4 | exon | 22284636 | 22284667 | 22284636 | ID=MS.gene069104.t1.exon1;Parent=MS.gene069104.t1 |
| chr5.4 | CDS | 22284636 | 22284667 | 22284636 | ID=cds.MS.gene069104.t1;Parent=MS.gene069104.t1 |
| chr5.4 | exon | 22284122 | 22284200 | 22284122 | ID=MS.gene069104.t1.exon2;Parent=MS.gene069104.t1 |
| chr5.4 | CDS | 22284122 | 22284200 | 22284122 | ID=cds.MS.gene069104.t1;Parent=MS.gene069104.t1 |
| chr5.4 | exon | 22283786 | 22283950 | 22283786 | ID=MS.gene069104.t1.exon3;Parent=MS.gene069104.t1 |
| chr5.4 | CDS | 22283786 | 22283950 | 22283786 | ID=cds.MS.gene069104.t1;Parent=MS.gene069104.t1 |
| chr5.4 | exon | 22283652 | 22283693 | 22283652 | ID=MS.gene069104.t1.exon4;Parent=MS.gene069104.t1 |
| chr5.4 | CDS | 22283652 | 22283693 | 22283652 | ID=cds.MS.gene069104.t1;Parent=MS.gene069104.t1 |
| chr5.4 | exon | 22282851 | 22282892 | 22282851 | ID=MS.gene069104.t1.exon5;Parent=MS.gene069104.t1 |
| chr5.4 | CDS | 22282851 | 22282892 | 22282851 | ID=cds.MS.gene069104.t1;Parent=MS.gene069104.t1 |
| chr5.4 | exon | 22282512 | 22282663 | 22282512 | ID=MS.gene069104.t1.exon6;Parent=MS.gene069104.t1 |
| chr5.4 | CDS | 22282512 | 22282663 | 22282512 | ID=cds.MS.gene069104.t1;Parent=MS.gene069104.t1 |
| chr5.4 | exon | 22282329 | 22282347 | 22282329 | ID=MS.gene069104.t1.exon7;Parent=MS.gene069104.t1 |
| chr5.4 | CDS | 22282329 | 22282347 | 22282329 | ID=cds.MS.gene069104.t1;Parent=MS.gene069104.t1 |
| Gene Sequence |
| Protein sequence |
