Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069727.t1 | ACJ84005.1 | 93.2 | 177 | 12 | 0 | 1 | 177 | 43 | 219 | 1.70E-92 | 348.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069727.t1 | P49332 | 62.9 | 178 | 65 | 1 | 1 | 177 | 44 | 221 | 6.0e-62 | 238.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069727.t1 | B7FGX6 | 93.2 | 177 | 12 | 0 | 1 | 177 | 43 | 219 | 1.2e-92 | 348.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049382 | MS.gene069727 | 0.804799 | 1.82E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene069727 | 0.808351 | 3.23E-50 | -1.69E-46 |
| MS.gene051180 | MS.gene069727 | 0.806061 | 9.88E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene069727 | 0.806433 | 8.24E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene069727 | 0.808838 | 2.54E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene069727 | 0.803249 | 3.81E-49 | -1.69E-46 |
| MS.gene052856 | MS.gene069727 | 0.814855 | 1.25E-51 | -1.69E-46 |
| MS.gene052858 | MS.gene069727 | 0.801276 | 9.72E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene069727 | -0.803229 | 3.85E-49 | -1.69E-46 |
| MS.gene057754 | MS.gene069727 | 0.805901 | 1.07E-49 | -1.69E-46 |
| MS.gene058182 | MS.gene069727 | 0.801408 | 9.13E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene069727 | 0.82888 | 7.03E-55 | -1.69E-46 |
| MS.gene059713 | MS.gene069727 | 0.813608 | 2.35E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069727.t1 | MTR_8g056940 | 90.960 | 177 | 16 | 0 | 1 | 177 | 43 | 219 | 2.27e-119 | 336 |
| MS.gene069727.t1 | MTR_4g124130 | 62.712 | 177 | 66 | 0 | 1 | 177 | 44 | 220 | 3.19e-79 | 235 |
| MS.gene069727.t1 | MTR_2g070060 | 61.017 | 177 | 69 | 0 | 1 | 177 | 43 | 219 | 7.65e-77 | 229 |
| MS.gene069727.t1 | MTR_2g070140 | 59.887 | 177 | 71 | 0 | 1 | 177 | 27 | 203 | 8.36e-77 | 228 |
| MS.gene069727.t1 | MTR_2g070070 | 62.712 | 177 | 66 | 0 | 1 | 177 | 43 | 219 | 1.74e-76 | 228 |
| MS.gene069727.t1 | MTR_3g467420 | 55.367 | 177 | 79 | 0 | 1 | 177 | 48 | 224 | 2.13e-73 | 220 |
| MS.gene069727.t1 | MTR_2g070200 | 61.714 | 175 | 65 | 2 | 2 | 174 | 44 | 218 | 3.13e-73 | 219 |
| MS.gene069727.t1 | MTR_2g070180 | 59.884 | 172 | 69 | 0 | 1 | 172 | 43 | 214 | 1.45e-72 | 218 |
| MS.gene069727.t1 | MTR_3g467430 | 55.932 | 177 | 78 | 0 | 1 | 177 | 48 | 224 | 1.56e-72 | 218 |
| MS.gene069727.t1 | MTR_2g070130 | 55.367 | 177 | 79 | 0 | 1 | 177 | 43 | 219 | 8.13e-72 | 216 |
| MS.gene069727.t1 | MTR_2g070150 | 62.500 | 160 | 60 | 0 | 1 | 160 | 43 | 202 | 8.94e-72 | 215 |
| MS.gene069727.t1 | MTR_2g070210 | 54.802 | 177 | 80 | 0 | 1 | 177 | 45 | 221 | 3.75e-70 | 212 |
| MS.gene069727.t1 | MTR_2g070110 | 58.757 | 177 | 72 | 1 | 1 | 177 | 43 | 218 | 1.96e-69 | 210 |
| MS.gene069727.t1 | MTR_2g070120 | 55.689 | 167 | 74 | 0 | 1 | 167 | 43 | 209 | 1.26e-64 | 197 |
| MS.gene069727.t1 | MTR_0186s0030 | 93.939 | 99 | 6 | 0 | 1 | 99 | 43 | 141 | 2.26e-63 | 192 |
| MS.gene069727.t1 | MTR_5g076900 | 52.326 | 172 | 81 | 1 | 1 | 172 | 46 | 216 | 3.25e-60 | 187 |
| MS.gene069727.t1 | MTR_7g065740 | 41.176 | 170 | 94 | 4 | 1 | 166 | 46 | 213 | 5.51e-34 | 120 |
| MS.gene069727.t1 | MTR_7g065720 | 38.235 | 170 | 99 | 4 | 1 | 166 | 46 | 213 | 4.10e-33 | 117 |
| MS.gene069727.t1 | MTR_7g065660 | 38.690 | 168 | 98 | 4 | 2 | 166 | 47 | 212 | 1.15e-32 | 116 |
| MS.gene069727.t1 | MTR_1g090060 | 38.012 | 171 | 101 | 3 | 1 | 167 | 42 | 211 | 1.41e-32 | 116 |
| MS.gene069727.t1 | MTR_7g065750 | 41.615 | 161 | 88 | 4 | 1 | 157 | 46 | 204 | 5.59e-32 | 114 |
| MS.gene069727.t1 | MTR_7g065270 | 39.326 | 178 | 100 | 5 | 1 | 175 | 46 | 218 | 1.23e-31 | 114 |
| MS.gene069727.t1 | MTR_4g059730 | 39.412 | 170 | 98 | 3 | 2 | 167 | 44 | 212 | 1.86e-31 | 113 |
| MS.gene069727.t1 | MTR_4g019780 | 35.714 | 168 | 103 | 4 | 2 | 166 | 48 | 213 | 8.30e-31 | 111 |
| MS.gene069727.t1 | MTR_7g065630 | 44.828 | 145 | 75 | 5 | 2 | 145 | 65 | 205 | 1.28e-30 | 111 |
| MS.gene069727.t1 | MTR_8g087425 | 36.478 | 159 | 98 | 2 | 1 | 157 | 44 | 201 | 1.88e-30 | 110 |
| MS.gene069727.t1 | MTR_7g065265 | 40.223 | 179 | 97 | 6 | 1 | 175 | 46 | 218 | 3.10e-30 | 110 |
| MS.gene069727.t1 | MTR_8g061950 | 40.625 | 160 | 88 | 4 | 1 | 153 | 46 | 205 | 5.18e-30 | 110 |
| MS.gene069727.t1 | MTR_4g019790 | 37.500 | 160 | 95 | 4 | 1 | 157 | 46 | 203 | 5.79e-30 | 109 |
| MS.gene069727.t1 | MTR_7g065230 | 40.113 | 177 | 93 | 7 | 2 | 175 | 47 | 213 | 1.22e-29 | 108 |
| MS.gene069727.t1 | MTR_6g080440 | 37.017 | 181 | 104 | 5 | 1 | 174 | 42 | 219 | 1.37e-29 | 108 |
| MS.gene069727.t1 | MTR_3g099757 | 47.244 | 127 | 66 | 1 | 1 | 127 | 44 | 169 | 2.27e-29 | 108 |
| MS.gene069727.t1 | MTR_5g037380 | 39.444 | 180 | 94 | 6 | 1 | 168 | 44 | 220 | 2.61e-29 | 108 |
| MS.gene069727.t1 | MTR_8g087410 | 38.621 | 145 | 86 | 2 | 1 | 143 | 45 | 188 | 4.20e-29 | 107 |
| MS.gene069727.t1 | MTR_7g065710 | 49.138 | 116 | 56 | 3 | 2 | 116 | 44 | 157 | 4.36e-29 | 107 |
| MS.gene069727.t1 | MTR_1g090100 | 38.824 | 170 | 99 | 3 | 1 | 166 | 41 | 209 | 9.09e-29 | 106 |
| MS.gene069727.t1 | MTR_7g065290 | 37.079 | 178 | 104 | 5 | 1 | 175 | 46 | 218 | 1.13e-28 | 106 |
| MS.gene069727.t1 | MTR_7g065590 | 40.268 | 149 | 82 | 5 | 1 | 145 | 46 | 191 | 2.00e-27 | 103 |
| MS.gene069727.t1 | MTR_7g065600 | 40.136 | 147 | 83 | 4 | 2 | 145 | 47 | 191 | 2.03e-27 | 103 |
| MS.gene069727.t1 | MTR_5g040430 | 31.902 | 163 | 104 | 2 | 2 | 157 | 47 | 209 | 2.28e-27 | 102 |
| MS.gene069727.t1 | MTR_1g090150 | 47.458 | 118 | 56 | 4 | 1 | 115 | 42 | 156 | 4.87e-27 | 102 |
| MS.gene069727.t1 | MTR_1g090070 | 37.143 | 175 | 96 | 5 | 2 | 167 | 49 | 218 | 5.55e-27 | 102 |
| MS.gene069727.t1 | MTR_2g072120 | 61.111 | 72 | 28 | 0 | 5 | 76 | 1 | 72 | 1.41e-26 | 96.7 |
| MS.gene069727.t1 | MTR_1g115195 | 36.747 | 166 | 95 | 4 | 1 | 159 | 42 | 204 | 3.60e-26 | 99.8 |
| MS.gene069727.t1 | MTR_7g065680 | 48.276 | 116 | 57 | 3 | 2 | 116 | 47 | 160 | 8.99e-26 | 98.6 |
| MS.gene069727.t1 | MTR_7g065700 | 50.000 | 114 | 54 | 3 | 2 | 114 | 47 | 158 | 2.73e-25 | 97.4 |
| MS.gene069727.t1 | MTR_1g090090 | 36.095 | 169 | 103 | 3 | 2 | 166 | 43 | 210 | 1.68e-24 | 95.5 |
| MS.gene069727.t1 | MTR_7g065260 | 38.095 | 147 | 86 | 4 | 2 | 145 | 54 | 198 | 6.56e-24 | 94.0 |
| MS.gene069727.t1 | MTR_7g065640 | 44.898 | 98 | 52 | 2 | 1 | 97 | 46 | 142 | 5.56e-23 | 91.3 |
| MS.gene069727.t1 | MTR_4g043640 | 86.047 | 43 | 6 | 0 | 106 | 148 | 44 | 86 | 2.26e-22 | 86.3 |
| MS.gene069727.t1 | MTR_7g100320 | 30.588 | 170 | 100 | 8 | 10 | 174 | 76 | 232 | 5.46e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069727.t1 | AT1G78380 | 60.920 | 174 | 68 | 0 | 1 | 174 | 43 | 216 | 2.66e-74 | 222 |
| MS.gene069727.t1 | AT1G17180 | 58.757 | 177 | 73 | 0 | 1 | 177 | 43 | 219 | 1.27e-73 | 221 |
| MS.gene069727.t1 | AT1G78370 | 57.803 | 173 | 73 | 0 | 1 | 173 | 43 | 215 | 2.03e-73 | 220 |
| MS.gene069727.t1 | AT1G78340 | 59.884 | 172 | 69 | 0 | 1 | 172 | 43 | 214 | 2.68e-72 | 217 |
| MS.gene069727.t1 | AT1G17170 | 58.192 | 177 | 73 | 1 | 1 | 177 | 43 | 218 | 3.84e-72 | 217 |
| MS.gene069727.t1 | AT1G78360 | 57.558 | 172 | 73 | 0 | 1 | 172 | 44 | 215 | 2.87e-70 | 212 |
| MS.gene069727.t1 | AT1G53680 | 54.023 | 174 | 78 | 2 | 1 | 172 | 46 | 219 | 3.03e-66 | 202 |
| MS.gene069727.t1 | AT1G17190 | 52.874 | 174 | 82 | 0 | 1 | 174 | 44 | 217 | 4.04e-65 | 199 |
| MS.gene069727.t1 | AT1G78320 | 54.651 | 172 | 78 | 0 | 1 | 172 | 43 | 214 | 1.50e-63 | 195 |
| MS.gene069727.t1 | AT3G43800 | 51.744 | 172 | 80 | 2 | 1 | 169 | 45 | 216 | 2.72e-56 | 177 |
| MS.gene069727.t1 | AT1G78320 | 44.186 | 172 | 69 | 1 | 1 | 172 | 43 | 187 | 5.94e-44 | 144 |
| MS.gene069727.t1 | AT3G09270 | 46.939 | 147 | 76 | 1 | 1 | 145 | 46 | 192 | 2.89e-36 | 125 |
| MS.gene069727.t1 | AT2G29420 | 40.331 | 181 | 94 | 6 | 1 | 175 | 48 | 220 | 1.68e-35 | 124 |
| MS.gene069727.t1 | AT2G29470 | 36.872 | 179 | 107 | 4 | 1 | 175 | 47 | 223 | 1.01e-32 | 117 |
| MS.gene069727.t1 | AT1G10370 | 38.286 | 175 | 100 | 4 | 1 | 167 | 44 | 218 | 6.00e-32 | 114 |
| MS.gene069727.t1 | AT2G29460 | 39.326 | 178 | 102 | 4 | 1 | 174 | 46 | 221 | 1.63e-31 | 113 |
| MS.gene069727.t1 | AT1G59700 | 39.130 | 184 | 102 | 5 | 1 | 175 | 46 | 228 | 7.75e-31 | 112 |
| MS.gene069727.t1 | AT2G29480 | 38.509 | 161 | 93 | 4 | 1 | 157 | 46 | 204 | 1.50e-28 | 106 |
| MS.gene069727.t1 | AT2G29490 | 38.125 | 160 | 95 | 2 | 1 | 157 | 46 | 204 | 1.65e-28 | 105 |
| MS.gene069727.t1 | AT5G62480 | 37.143 | 140 | 80 | 1 | 2 | 133 | 48 | 187 | 7.74e-28 | 104 |
| MS.gene069727.t1 | AT1G10360 | 36.571 | 175 | 103 | 4 | 1 | 167 | 44 | 218 | 1.16e-27 | 103 |
| MS.gene069727.t1 | AT1G59670 | 36.612 | 183 | 108 | 4 | 1 | 175 | 46 | 228 | 1.43e-27 | 103 |
| MS.gene069727.t1 | AT1G74590 | 32.044 | 181 | 111 | 4 | 2 | 173 | 47 | 224 | 2.49e-27 | 103 |
| MS.gene069727.t1 | AT2G29450 | 47.154 | 123 | 58 | 4 | 1 | 118 | 45 | 165 | 2.83e-27 | 102 |
| MS.gene069727.t1 | AT1G27130 | 34.483 | 174 | 107 | 3 | 1 | 167 | 47 | 220 | 3.09e-27 | 102 |
| MS.gene069727.t1 | AT1G27140 | 34.615 | 182 | 109 | 4 | 1 | 175 | 48 | 226 | 3.47e-27 | 102 |
| MS.gene069727.t1 | AT2G29440 | 44.628 | 121 | 63 | 2 | 1 | 118 | 45 | 164 | 4.15e-26 | 99.8 |
| MS.gene069727.t1 | AT1G69930 | 32.370 | 173 | 110 | 3 | 2 | 167 | 52 | 224 | 1.32e-25 | 98.6 |
| MS.gene069727.t1 | AT1G69920 | 33.523 | 176 | 106 | 4 | 1 | 167 | 75 | 248 | 2.18e-23 | 93.2 |
Find 32 sgRNAs with CRISPR-Local
Find 57 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAACTCAAGCAAGATTT+TGG | 0.133634 | 8.4:+53817951 | MS.gene069727:CDS |
| GGAGTTGATTGAAGGCTTAA+AGG | 0.261757 | 8.4:+53818347 | MS.gene069727:CDS |
| ATAAAGATGGACTCAGAAAT+TGG | 0.267987 | 8.4:-53817866 | None:intergenic |
| CTTGGAGACAAGCCTTATTT+TGG | 0.284960 | 8.4:+53818384 | MS.gene069727:CDS |
| GTGATGTTGGAGGAAGGATA+TGG | 0.346197 | 8.4:+53818289 | MS.gene069727:CDS |
| AATTCCAGTTCTTATCCATA+AGG | 0.411200 | 8.4:+53817838 | MS.gene069727:CDS |
| TGATGAGGTTTGGAAGGATA+AGG | 0.411738 | 8.4:+53817901 | MS.gene069727:CDS |
| TTTCCCTTATGGATAAGAAC+TGG | 0.413273 | 8.4:-53817842 | None:intergenic |
| AAAGAGAGATGAGATTGAAT+TGG | 0.418834 | 8.4:+53818317 | MS.gene069727:CDS |
| TTGAGTATATTGATGAGGTT+TGG | 0.428745 | 8.4:+53817891 | MS.gene069727:CDS |
| TAAGGATCTGAGGGTAGAAA+TGG | 0.431150 | 8.4:-53817926 | None:intergenic |
| AATGTGTCACCACCAAAATA+AGG | 0.433956 | 8.4:-53818396 | None:intergenic |
| TGAGATTGAATTGGCAAAGA+AGG | 0.443100 | 8.4:+53818326 | MS.gene069727:CDS |
| ATTCCAGTTCTTATCCATAA+GGG | 0.455725 | 8.4:+53817839 | MS.gene069727:CDS |
| ATGAGTTTGTTGTTAACTAT+AGG | 0.457851 | 8.4:+53818586 | MS.gene069727:CDS |
| TATAAAACCAACTATGAAAA+GGG | 0.461833 | 8.4:-53818443 | None:intergenic |
| GTATAAAACCAACTATGAAA+AGG | 0.463905 | 8.4:-53818444 | None:intergenic |
| AAAATGCAGGTTGGTGATGT+TGG | 0.476506 | 8.4:+53818276 | MS.gene069727:intron |
| GCAAAGAAGGAGTTGATTGA+AGG | 0.480756 | 8.4:+53818339 | MS.gene069727:CDS |
| TGATGTTGGAGGAAGGATAT+GGG | 0.485671 | 8.4:+53818290 | MS.gene069727:CDS |
| AATATACTCAACAATAAAGA+TGG | 0.489706 | 8.4:-53817879 | None:intergenic |
| AAGGAATTAGAGAATGTGCT+TGG | 0.497037 | 8.4:+53818366 | MS.gene069727:CDS |
| CTATAGGAAGAGGTTAGAGT+TGG | 0.508025 | 8.4:+53818602 | MS.gene069727:CDS |
| TTGTTGTTAACTATAGGAAG+AGG | 0.543349 | 8.4:+53818592 | MS.gene069727:CDS |
| GTATATTGATGAGGTTTGGA+AGG | 0.548215 | 8.4:+53817895 | MS.gene069727:CDS |
| GTTGGAGGAAGGATATGGGC+TGG | 0.551186 | 8.4:+53818294 | MS.gene069727:CDS |
| ATTATGCGACTTCAAAGTTG+AGG | 0.582566 | 8.4:+53818476 | MS.gene069727:CDS |
| TATTGTTGAGTATATTGATG+AGG | 0.592193 | 8.4:+53817886 | MS.gene069727:CDS |
| ATGCAGGTTGGTGATGTTGG+AGG | 0.604533 | 8.4:+53818279 | MS.gene069727:intron |
| AGTGTGATAAACTGATTGCA+TGG | 0.628334 | 8.4:+53818502 | MS.gene069727:CDS |
| AGGTTGGTGATGTTGGAGGA+AGG | 0.655636 | 8.4:+53818283 | MS.gene069727:intron |
| GTGTGATAAACTGATTGCAT+GGG | 0.669961 | 8.4:+53818503 | MS.gene069727:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATATTTTTATTTATTTAC+TGG | - | chr8.4:53818062-53818081 | None:intergenic | 10.0% |
| !!! | ATTTTTATTTATTTACTGGT+AGG | - | chr8.4:53818058-53818077 | None:intergenic | 15.0% |
| !! | AATATACTCAACAATAAAGA+TGG | - | chr8.4:53817882-53817901 | None:intergenic | 20.0% |
| !! | CATTCTTGATATTTAATCAA+TGG | + | chr8.4:53818168-53818187 | MS.gene069727:intron | 20.0% |
| !! | TAATGTGTTAAAAAAAATGC+AGG | + | chr8.4:53818263-53818282 | MS.gene069727:intron | 20.0% |
| !! | TATAAAACCAACTATGAAAA+GGG | - | chr8.4:53818446-53818465 | None:intergenic | 20.0% |
| !! | TTCTCTTGTCTTTAATAATA+TGG | - | chr8.4:53818222-53818241 | None:intergenic | 20.0% |
| ! | AAACTCATATCTTATTAGGA+AGG | - | chr8.4:53818142-53818161 | None:intergenic | 25.0% |
| ! | GTATAAAACCAACTATGAAA+AGG | - | chr8.4:53818447-53818466 | None:intergenic | 25.0% |
| ! | TATTGTTGAGTATATTGATG+AGG | + | chr8.4:53817886-53817905 | MS.gene069727:CDS | 25.0% |
| ! | TCCTAAACTCATATCTTATT+AGG | - | chr8.4:53818146-53818165 | None:intergenic | 25.0% |
| ! | TCCTAATAAGATATGAGTTT+AGG | + | chr8.4:53818142-53818161 | MS.gene069727:intron | 25.0% |
| !!! | ATGAGTTTGTTGTTAACTAT+AGG | + | chr8.4:53818586-53818605 | MS.gene069727:CDS | 25.0% |
| AAAGAGAGATGAGATTGAAT+TGG | + | chr8.4:53818317-53818336 | MS.gene069727:CDS | 30.0% | |
| AATTCCAGTTCTTATCCATA+AGG | + | chr8.4:53817838-53817857 | MS.gene069727:CDS | 30.0% | |
| ATTCCAGTTCTTATCCATAA+GGG | + | chr8.4:53817839-53817858 | MS.gene069727:CDS | 30.0% | |
| CATATCTTATTAGGAAGGAA+AGG | - | chr8.4:53818137-53818156 | None:intergenic | 30.0% | |
| GAATGAGACACAAAAAACTT+TGG | - | chr8.4:53818015-53818034 | None:intergenic | 30.0% | |
| GTGTTAAAAAAAATGCAGGT+TGG | + | chr8.4:53818267-53818286 | MS.gene069727:intron | 30.0% | |
| TTGAGTATATTGATGAGGTT+TGG | + | chr8.4:53817891-53817910 | MS.gene069727:CDS | 30.0% | |
| ! | AAAACTCAAGCAAGATTTTG+GGG | + | chr8.4:53817953-53817972 | MS.gene069727:CDS | 30.0% |
| ! | ACTGGAATTTTCTTGTGAAT+TGG | - | chr8.4:53817827-53817846 | None:intergenic | 30.0% |
| ! | AGAAAACTCAAGCAAGATTT+TGG | + | chr8.4:53817951-53817970 | MS.gene069727:CDS | 30.0% |
| ! | ATAAAGATGGACTCAGAAAT+TGG | - | chr8.4:53817869-53817888 | None:intergenic | 30.0% |
| ! | GAAAACTCAAGCAAGATTTT+GGG | + | chr8.4:53817952-53817971 | MS.gene069727:CDS | 30.0% |
| ! | TTGTTGTTAACTATAGGAAG+AGG | + | chr8.4:53818592-53818611 | MS.gene069727:CDS | 30.0% |
| !!! | ACAAGAAGGTAAGTTTTGTT+AGG | + | chr8.4:53817987-53818006 | MS.gene069727:intron | 30.0% |
| !!! | GTTTTTTGTGTCTCATTCAA+TGG | + | chr8.4:53818017-53818036 | MS.gene069727:intron | 30.0% |
| AAGGAATTAGAGAATGTGCT+TGG | + | chr8.4:53818366-53818385 | MS.gene069727:CDS | 35.0% | |
| AATGTGTCACCACCAAAATA+AGG | - | chr8.4:53818399-53818418 | None:intergenic | 35.0% | |
| AGTGTGATAAACTGATTGCA+TGG | + | chr8.4:53818502-53818521 | MS.gene069727:CDS | 35.0% | |
| ATTATGCGACTTCAAAGTTG+AGG | + | chr8.4:53818476-53818495 | MS.gene069727:CDS | 35.0% | |
| GTATATTGATGAGGTTTGGA+AGG | + | chr8.4:53817895-53817914 | MS.gene069727:CDS | 35.0% | |
| GTGTGATAAACTGATTGCAT+GGG | + | chr8.4:53818503-53818522 | MS.gene069727:CDS | 35.0% | |
| TGAGATTGAATTGGCAAAGA+AGG | + | chr8.4:53818326-53818345 | MS.gene069727:CDS | 35.0% | |
| TTTCCCTTATGGATAAGAAC+TGG | - | chr8.4:53817845-53817864 | None:intergenic | 35.0% | |
| ! | AGTTTTCTCATAAGGATCTG+AGG | - | chr8.4:53817939-53817958 | None:intergenic | 35.0% |
| ! | CTTGCTTGAGTTTTCTCATA+AGG | - | chr8.4:53817947-53817966 | None:intergenic | 35.0% |
| ! | CTTTGATCCCTTTTCATAGT+TGG | + | chr8.4:53818436-53818455 | MS.gene069727:CDS | 35.0% |
| ! | GTTTTCTCATAAGGATCTGA+GGG | - | chr8.4:53817938-53817957 | None:intergenic | 35.0% |
| !!! | ATTTTGGTGGTGACACATTT+GGG | + | chr8.4:53818400-53818419 | MS.gene069727:CDS | 35.0% |
| !!! | CAGAAATTGGTTTTCCCTTA+TGG | - | chr8.4:53817856-53817875 | None:intergenic | 35.0% |
| !!! | TATTTTGGTGGTGACACATT+TGG | + | chr8.4:53818399-53818418 | MS.gene069727:CDS | 35.0% |
| CTATAGGAAGAGGTTAGAGT+TGG | + | chr8.4:53818602-53818621 | MS.gene069727:CDS | 40.0% | |
| TAAGGATCTGAGGGTAGAAA+TGG | - | chr8.4:53817929-53817948 | None:intergenic | 40.0% | |
| TGATGAGGTTTGGAAGGATA+AGG | + | chr8.4:53817901-53817920 | MS.gene069727:CDS | 40.0% | |
| TGATGTTGGAGGAAGGATAT+GGG | + | chr8.4:53818290-53818309 | MS.gene069727:CDS | 40.0% | |
| ! | GCAAAGAAGGAGTTGATTGA+AGG | + | chr8.4:53818339-53818358 | MS.gene069727:CDS | 40.0% |
| ! | GGAGTTGATTGAAGGCTTAA+AGG | + | chr8.4:53818347-53818366 | MS.gene069727:CDS | 40.0% |
| ! | GGGTGATTTTGTCAACAAGA+AGG | + | chr8.4:53817973-53817992 | MS.gene069727:CDS | 40.0% |
| !! | AAAATGCAGGTTGGTGATGT+TGG | + | chr8.4:53818276-53818295 | MS.gene069727:intron | 40.0% |
| !!! | CTTGGAGACAAGCCTTATTT+TGG | + | chr8.4:53818384-53818403 | MS.gene069727:CDS | 40.0% |
| GTGATGTTGGAGGAAGGATA+TGG | + | chr8.4:53818289-53818308 | MS.gene069727:CDS | 45.0% | |
| !!! | GGAGACAAGCCTTATTTTGG+TGG | + | chr8.4:53818387-53818406 | MS.gene069727:CDS | 45.0% |
| !! | AGGTTGGTGATGTTGGAGGA+AGG | + | chr8.4:53818283-53818302 | MS.gene069727:intron | 50.0% |
| !! | ATGCAGGTTGGTGATGTTGG+AGG | + | chr8.4:53818279-53818298 | MS.gene069727:intron | 50.0% |
| GTTGGAGGAAGGATATGGGC+TGG | + | chr8.4:53818294-53818313 | MS.gene069727:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 53817806 | 53818629 | 53817806 | ID=MS.gene069727 |
| chr8.4 | mRNA | 53817806 | 53818629 | 53817806 | ID=MS.gene069727.t1;Parent=MS.gene069727 |
| chr8.4 | exon | 53817806 | 53817994 | 53817806 | ID=MS.gene069727.t1.exon1;Parent=MS.gene069727.t1 |
| chr8.4 | CDS | 53817806 | 53817994 | 53817806 | ID=cds.MS.gene069727.t1;Parent=MS.gene069727.t1 |
| chr8.4 | exon | 53818285 | 53818629 | 53818285 | ID=MS.gene069727.t1.exon2;Parent=MS.gene069727.t1 |
| chr8.4 | CDS | 53818285 | 53818629 | 53818285 | ID=cds.MS.gene069727.t1;Parent=MS.gene069727.t1 |
| Gene Sequence |
| Protein sequence |
