AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052858


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052858.t1 MTR_1g035700 92.035 113 9 0 1 113 1 113 1.16e-71 215
MS.gene052858.t1 MTR_1g035700 92.035 113 9 0 1 113 1 113 1.21e-71 215
MS.gene052858.t1 MTR_1g035700 92.035 113 9 0 1 113 1 113 8.00e-71 214
MS.gene052858.t1 MTR_4g074120 58.407 113 43 2 1 111 1 111 3.29e-35 121
MS.gene052858.t1 MTR_4g074120 58.407 113 43 2 1 111 1 111 6.32e-35 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 0 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGAATTCATCTTTGAAT+TGG + 11236:2792-2811 MS.gene052858:CDS 20.0%
!!! TCAAATACTGATTTTCATTA+TGG + 11236:2767-2786 MS.gene052858:CDS 20.0%
!! TGTTGATGAACAGTATAAAT+TGG + 11236:3054-3073 MS.gene052858:CDS 25.0%
!! TTCCAATGGGAAATTATTTT+GGG + 11236:2867-2886 MS.gene052858:CDS 25.0%
AACCCAAAATAATTTCCCAT+TGG - 11236:2872-2891 MS.gene052858:intergenic 30.0%
CATGCAATATCATTTGAATC+TGG + 11236:2815-2834 MS.gene052858:CDS 30.0%
GGTTGAATAATGATACTTCT+GGG + 11236:2888-2907 MS.gene052858:CDS 30.0%
TGATGAACAGTATAAATTGG+AGG + 11236:3057-3076 MS.gene052858:CDS 30.0%
! GTTCCAATGGGAAATTATTT+TGG + 11236:2866-2885 MS.gene052858:CDS 30.0%
AACAGTATAAATTGGAGGAG+GGG + 11236:3062-3081 MS.gene052858:CDS 35.0%
GAACAGTATAAATTGGAGGA+GGG + 11236:3061-3080 MS.gene052858:CDS 35.0%
GCAATATCATTTGAATCTGG+TGG + 11236:2818-2837 MS.gene052858:CDS 35.0%
GGGTTGAATAATGATACTTC+TGG + 11236:2887-2906 MS.gene052858:CDS 35.0%
TGAACAGTATAAATTGGAGG+AGG + 11236:3060-3079 MS.gene052858:CDS 35.0%
! GGAATTCAAGCGTTGTTAAT+AGG + 11236:2927-2946 MS.gene052858:CDS 35.0%
!! TTCTGGGATGATGATGTATT+CGG + 11236:2904-2923 MS.gene052858:CDS 35.0%
ATTGAAGCATGATGCAGGTT+TGG + 11236:3018-3037 MS.gene052858:CDS 40.0%
GTTCGTCTGTTATGAGTCAA+CGG + 11236:2951-2970 MS.gene052858:CDS 40.0%
TTCGTCTGTTATGAGTCAAC+GGG + 11236:2952-2971 MS.gene052858:CDS 40.0%
! TCTGGGATGATGATGTATTC+GGG + 11236:2905-2924 MS.gene052858:CDS 40.0%
!! CTTCTTGTTGATTCTGTTCC+TGG + 11236:2995-3014 MS.gene052858:CDS 40.0%
AGTCAACGGGAATATGTGTC+TGG + 11236:2965-2984 MS.gene052858:CDS 45.0%
TTGCCTGAGATGGTTCCAAT+GGG + 11236:2854-2873 MS.gene052858:CDS 45.0%
TTTCCCATTGGAACCATCTC+AGG - 11236:2860-2879 MS.gene052858:intergenic 45.0%
! CTGGGATGATGATGTATTCG+GGG + 11236:2906-2925 MS.gene052858:CDS 45.0%
! TGTTAGTAGCTTGCCTGAGA+TGG + 11236:2844-2863 MS.gene052858:CDS 45.0%
CCTGCATCATGCTTCAATCC+AGG - 11236:3016-3035 MS.gene052858:intergenic 50.0%
CCTGGATTGAAGCATGATGC+AGG + 11236:3013-3032 MS.gene052858:CDS 50.0%
CTTGCCTGAGATGGTTCCAA+TGG + 11236:2853-2872 MS.gene052858:CDS 50.0%
ATGCAGGTTTGGCTGCTGAG+TGG + 11236:3029-3048 MS.gene052858:CDS 55.0%


Chromosome Type Strat End Strand Name
11236 gene 2755 3096 2755 ID=MS.gene052858
11236 mRNA 2755 3096 2755 ID=MS.gene052858.t1;Parent=MS.gene052858
11236 exon 2755 3096 2755 ID=MS.gene052858.t1.exon1;Parent=MS.gene052858.t1
11236 CDS 2755 3096 2755 ID=cds.MS.gene052858.t1;Parent=MS.gene052858.t1
Gene Sequence

>MS.gene052858

ATGGCAGCAGAGTCAAATACTGATTTTCATTATGGTGATATGAATTCATCTTTGAATTGGCATGCAATATCATTTGAATCTGGTGGTGTTGTTAGTAGCTTGCCTGAGATGGTTCCAATGGGAAATTATTTTGGGTTGAATAATGATACTTCTGGGATGATGATGTATTCGGGGAATTCAAGCGTTGTTAATAGGAGTTCGTCTGTTATGAGTCAACGGGAATATGTGTCTGGCTGTTCTCTTCTTGTTGATTCTGTTCCTGGATTGAAGCATGATGCAGGTTTGGCTGCTGAGTGGTCTGTTGATGAACAGTATAAATTGGAGGAGGGGCTTCTCAAGTAA

Protein sequence

>MS.gene052858.t1

MAAESNTDFHYGDMNSSLNWHAISFESGGVVSSLPEMVPMGNYFGLNNDTSGMMMYSGNSSVVNRSSSVMSQREYVSGCSLLVDSVPGLKHDAGLAAEWSVDEQYKLEEGLLK