AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069743

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069743.t1 MTR_1148s0010 50.636 393 150 5 190 582 7 355 3.95e-114 362
MS.gene069743.t1 MTR_0242s0010 38.909 550 228 11 147 647 54 544 5.00e-93 304
MS.gene069743.t1 MTR_8g045280 50.425 353 136 6 223 539 197 546 4.16e-88 298
MS.gene069743.t1 MTR_6g024400 42.439 410 156 16 227 595 103 473 6.23e-75 259
MS.gene069743.t1 MTR_6g033695 33.939 660 347 19 8 638 21 620 1.59e-73 256
MS.gene069743.t1 MTR_4g027930 58.602 186 62 1 360 545 1 171 4.12e-67 223
MS.gene069743.t1 MTR_2g060030 41.401 314 161 2 196 507 180 472 3.43e-65 234
MS.gene069743.t1 MTR_3g022785 38.992 377 160 7 190 551 131 452 8.52e-63 220
MS.gene069743.t1 MTR_6g048830 56.250 176 76 1 369 544 45 219 3.98e-61 209
MS.gene069743.t1 MTR_6g048830 59.615 52 21 0 222 273 1 52 2.74e-11 65.9
MS.gene069743.t1 MTR_6g054900 50.532 188 89 2 356 543 26 209 4.72e-57 197
MS.gene069743.t1 MTR_7g083690 32.298 483 241 11 174 651 53 454 6.22e-56 210
MS.gene069743.t1 MTR_0073s0040 42.324 241 134 1 339 579 33 268 2.39e-54 192
MS.gene069743.t1 MTR_5g073130 35.376 359 153 11 223 576 79 363 9.87e-51 184
MS.gene069743.t1 MTR_5g054740 36.986 365 178 13 165 508 222 555 1.24e-45 177
MS.gene069743.t1 MTR_7g033825 37.367 281 125 5 339 618 15 245 7.47e-45 174
MS.gene069743.t1 MTR_6g052740 56.757 148 56 3 167 312 97 238 2.77e-43 160
MS.gene069743.t1 MTR_1g062580 31.707 451 244 10 2 412 6 432 5.72e-43 167
MS.gene069743.t1 MTR_1g062580 35.556 135 73 2 489 617 439 565 5.11e-17 86.3
MS.gene069743.t1 MTR_3g049960 29.590 463 217 11 223 648 36 426 2.27e-42 164
MS.gene069743.t1 MTR_3g048390 40.609 197 116 1 356 551 170 366 6.75e-42 160
MS.gene069743.t1 MTR_4g061490 30.986 355 162 8 196 518 125 428 1.58e-40 159
MS.gene069743.t1 MTR_7g050780 76.136 88 21 0 190 277 29 116 1.28e-39 143
MS.gene069743.t1 MTR_4g005250 31.861 317 144 7 261 527 66 360 3.56e-38 147
MS.gene069743.t1 MTR_0031s0120 38.122 181 98 1 360 540 152 318 1.48e-37 145
MS.gene069743.t1 MTR_4g044667 51.220 164 68 4 165 326 93 246 6.17e-37 144
MS.gene069743.t1 MTR_3g022950 34.021 388 190 15 54 407 8 363 8.41e-37 149
MS.gene069743.t1 MTR_3g464880 37.226 274 135 7 166 413 12 274 1.17e-36 140
MS.gene069743.t1 MTR_8g103960 45.926 135 70 1 440 574 2 133 1.51e-36 134
MS.gene069743.t1 MTR_5g048260 43.182 132 75 0 364 495 104 235 3.56e-35 134
MS.gene069743.t1 MTR_5g048260 42.683 82 43 2 174 252 24 104 9.33e-11 63.5
MS.gene069743.t1 MTR_5g053650 32.773 238 140 5 366 602 5 223 2.20e-34 136
MS.gene069743.t1 MTR_6g053340 48.305 118 61 0 423 540 152 269 5.82e-34 132
MS.gene069743.t1 MTR_6g453110 75.581 86 21 0 190 275 61 146 9.13e-34 131
MS.gene069743.t1 MTR_7g108760 44.094 127 71 0 410 536 38 164 3.07e-31 130
MS.gene069743.t1 MTR_8g058470 44.094 127 71 0 410 536 38 164 3.21e-31 130
MS.gene069743.t1 MTR_6g039210 31.741 293 144 8 203 439 121 413 6.15e-25 108
MS.gene069743.t1 MTR_6g045577 43.200 125 54 2 187 295 118 241 5.61e-22 97.1
MS.gene069743.t1 MTR_5g049880 43.200 125 54 2 187 295 118 241 5.61e-22 97.1
MS.gene069743.t1 MTR_0347s0040 52.000 100 41 3 208 307 2 94 6.65e-22 94.7
MS.gene069743.t1 MTR_5g065250 23.952 334 206 5 196 526 53 341 1.27e-20 97.8
MS.gene069743.t1 MTR_1g033680 25.329 304 173 9 221 516 1 258 6.52e-20 95.1
MS.gene069743.t1 MTR_0406s0010 50.633 79 39 0 197 275 3 81 1.35e-19 87.4
MS.gene069743.t1 MTR_2g103400 35.938 128 82 0 400 527 139 266 2.13e-19 93.2
MS.gene069743.t1 MTR_6g036830 44.954 109 56 2 169 275 204 310 2.23e-19 91.7
MS.gene069743.t1 MTR_7g108440 26.510 298 180 8 173 470 2 260 5.08e-19 92.8
MS.gene069743.t1 MTR_3g067565 43.363 113 60 2 168 277 111 222 7.56e-19 87.8
MS.gene069743.t1 MTR_2g450410 31.013 158 78 1 360 517 339 465 2.75e-18 89.4
MS.gene069743.t1 MTR_2g450410 42.424 99 57 0 176 274 82 180 9.50e-18 87.8
MS.gene069743.t1 MTR_2g067560 38.636 220 86 9 230 417 375 577 3.38e-18 90.5
MS.gene069743.t1 MTR_5g021380 31.401 207 96 6 436 620 206 388 1.42e-17 88.6
MS.gene069743.t1 MTR_5g021380 44.928 69 38 0 178 246 46 114 2.14e-11 68.6
MS.gene069743.t1 MTR_2g056170 36.979 192 88 8 197 375 38 209 1.22e-15 77.4
MS.gene069743.t1 MTR_4g056240 44.444 81 45 0 195 275 56 136 1.48e-15 79.0
MS.gene069743.t1 MTR_2g438380 51.724 58 28 0 485 542 26 83 4.61e-14 68.6
MS.gene069743.t1 MTR_6g033770 45.882 85 43 1 210 294 4 85 4.62e-13 70.1
MS.gene069743.t1 MTR_7g113670 36.283 113 59 2 212 322 208 309 7.99e-13 70.9
MS.gene069743.t1 MTR_1g035030 34.752 141 73 5 216 341 105 241 1.49e-12 70.1
MS.gene069743.t1 MTR_0637s0010 36.129 155 86 5 274 416 271 424 8.92e-12 68.9
MS.gene069743.t1 MTR_1g024800 28.788 132 94 0 396 527 3 134 9.47e-12 65.9
MS.gene069743.t1 MTR_0007s0010 52.459 61 29 0 230 290 61 121 3.25e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 199 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGTAAACGCAACGTTTA+TGG 0.153267 6.1:+49098157 MS.gene069743:CDS
TTCAATTTGCTTCTGTTTGT+TGG 0.225398 6.1:-49097894 None:intergenic
AAGTTATGTGTTATTGATTT+TGG 0.236643 6.1:+49098883 MS.gene069743:CDS
GATTGGGCTGATTATGATTC+TGG 0.257784 6.1:+49097692 MS.gene069743:CDS
CGCCGGTCGTGAGGACAAAT+TGG 0.259912 6.1:+49097543 MS.gene069743:CDS
TGAGGAATGGGGCTACAATT+TGG 0.264585 6.1:+49099050 MS.gene069743:CDS
GTAAGGGTTCCTCTGCATTT+AGG 0.277572 6.1:+49098445 MS.gene069743:CDS
CCATAAACGTTGCGTTTACT+TGG 0.280633 6.1:-49098157 None:intergenic
TGGAAAATTGGTGAAATAAA+AGG 0.291870 6.1:-49098065 None:intergenic
TTCTGGACAGTCAAGGTTTA+GGG 0.292738 6.1:+49097709 MS.gene069743:CDS
TCCAGTTCTGAGTTAGCTAA+TGG 0.299629 6.1:+49098019 MS.gene069743:CDS
ATTCTGGACAGTCAAGGTTT+AGG 0.307667 6.1:+49097708 MS.gene069743:CDS
GCGGTCTGATAGCGTTTCTT+TGG 0.311488 6.1:+49098915 MS.gene069743:CDS
GGAGTTGAAGGGCAACATTA+TGG 0.316626 6.1:+49098396 MS.gene069743:CDS
AACGTTTATGGGGCAGTTTA+CGG 0.322656 6.1:+49098169 MS.gene069743:CDS
TAGATCAATTGAAGAGGATT+TGG 0.327219 6.1:+49098558 MS.gene069743:CDS
TAATATTCGAAGATGGAATA+AGG 0.331882 6.1:+49098783 MS.gene069743:CDS
AGACTCTGCTGCATCATTAC+TGG 0.332556 6.1:-49099994 None:intergenic
CAATATTCGAAGAACTAAAA+AGG 0.335962 6.1:-49098708 None:intergenic
AGACAACTGAGCTGGAAAAT+TGG 0.345910 6.1:-49098077 None:intergenic
AGATCTCGCAGTGGTATCTA+TGG 0.349322 6.1:+49098669 MS.gene069743:CDS
CAAGTAAACGCAACGTTTAT+GGG 0.349496 6.1:+49098158 MS.gene069743:CDS
TTTATATCAAACAAATGTTC+AGG 0.349791 6.1:-49099408 None:intergenic
GCCGGTCGTGAGGACAAATT+GGG 0.351454 6.1:+49097544 MS.gene069743:CDS
TGCTGTTCCTGAACATATAT+TGG 0.352588 6.1:+49099578 MS.gene069743:CDS
GACAGCTTGTTCTTCTGTAT+CGG 0.353552 6.1:+49100199 MS.gene069743:intron
AATTAAAATTGTTGAGGAAT+GGG 0.357370 6.1:+49099038 MS.gene069743:CDS
TGTACGGCTTCAGTGATTAA+TGG 0.357558 6.1:+49098598 MS.gene069743:CDS
GGAGCTTGGCTGAGATTATA+TGG 0.358987 6.1:+49098826 MS.gene069743:CDS
GAGAAGAAGGATGTTGTAAT+AGG 0.363479 6.1:+49098319 MS.gene069743:CDS
GAGTTGAAGGGCAACATTAT+GGG 0.366565 6.1:+49098397 MS.gene069743:CDS
AAAGCGTTGCGACAGGGTTA+TGG 0.377928 6.1:+49097632 MS.gene069743:CDS
TTTAGTGGACAAGATAGTTA+AGG 0.381537 6.1:+49099179 MS.gene069743:CDS
CTTGTCCACATCTTTAACAT+TGG 0.385402 6.1:-49098206 None:intergenic
TGAAGTGTGCGGGATGTTAG+AGG 0.385468 6.1:+49098123 MS.gene069743:CDS
GAGGAATGGGGCTACAATTT+GGG 0.388142 6.1:+49099051 MS.gene069743:CDS
TTATCTACACAAAGCTGAAC+TGG 0.389291 6.1:-49099855 None:intergenic
TCGGCTGATGTAGAACTTAC+AGG 0.389491 6.1:-49099939 None:intergenic
GATGTCTTTCAAGTTCTTGA+AGG 0.398606 6.1:+49098730 MS.gene069743:CDS
TTTACATCCAATATATGTTC+AGG 0.402426 6.1:-49099585 None:intergenic
GATCAAGTGGCATAGGGATT+GGG 0.403409 6.1:+49097676 MS.gene069743:CDS
GGTCCTGCTGTACCGATAAC+AGG 0.408540 6.1:+49099909 MS.gene069743:CDS
GATTCGTTCCAAGCGTGTAT+TGG 0.414008 6.1:-49098853 None:intergenic
TCGTCTACAACAAGCTCAAC+TGG 0.415001 6.1:-49099324 None:intergenic
AGATCAAGTGGCATAGGGAT+TGG 0.416601 6.1:+49097675 MS.gene069743:CDS
TGCTAATTTAGATGTTTCTC+AGG 0.423064 6.1:+49099212 MS.gene069743:CDS
GGGGAGAGAGCGTAGATGAC+TGG 0.426372 6.1:+49097585 MS.gene069743:CDS
CCCATTAGCTAACTCAGAAC+TGG 0.427659 6.1:-49098020 None:intergenic
GCTGCTGTGTTATTACCAAC+CGG 0.428487 6.1:+49099294 MS.gene069743:CDS
GGGTGTTACGGTGCTGGATA+AGG 0.429900 6.1:+49098372 MS.gene069743:CDS
GCTGCTGTGTTATTATCAAC+CGG 0.434419 6.1:+49099825 MS.gene069743:CDS
CAGCATCTACAATACGGTTC+TGG 0.437091 6.1:-49098639 None:intergenic
CCAGTTCTGAGTTAGCTAAT+GGG 0.437591 6.1:+49098020 MS.gene069743:CDS
AAATTAAAATTGTTGAGGAA+TGG 0.439317 6.1:+49099037 MS.gene069743:CDS
TCAGAGATCTGGATCGGAAA+AGG 0.440119 6.1:+49097762 MS.gene069743:CDS
GATGCAGCAGAGTCTCTTGA+TGG 0.441994 6.1:+49100002 MS.gene069743:CDS
GTGGAAAAGTTGGTTATTGA+TGG 0.446651 6.1:+49099003 MS.gene069743:CDS
TCTAATTTCTATCTTCGTAA+AGG 0.451660 6.1:+49098097 MS.gene069743:CDS
GGAGGAGGGTGTTACGGTGC+TGG 0.452883 6.1:+49098366 MS.gene069743:CDS
ACAGGAACAACACCTGTTAT+CGG 0.453227 6.1:-49099921 None:intergenic
GTTCTTCTGTATCGGGTCCA+TGG 0.453267 6.1:+49100207 MS.gene069743:CDS
TCACATTATGAAGCTCATCT+TGG 0.457576 6.1:+49099711 MS.gene069743:CDS
ACAGCTTGTTCTTCTGTATC+GGG 0.458785 6.1:+49100200 MS.gene069743:intron
CGTCGTAACACCTTCAGAAC+AGG 0.461046 6.1:-49097842 None:intergenic
AACAGCTGATCTATCAAAAC+GGG 0.462942 6.1:-49098287 None:intergenic
TGTTAATGCTGATTGTTTAG+TGG 0.467491 6.1:+49099164 MS.gene069743:CDS
TAATGTAAAGGTGGGTCAGC+AGG 0.467600 6.1:+49098480 MS.gene069743:CDS
GCAAGCGATCCCTTCTCTCT+TGG 0.469290 6.1:-49097499 None:intergenic
CAACTTTGTGTAGACGAAGT+TGG 0.471839 6.1:+49099507 MS.gene069743:CDS
TGATGTTTGTGGAGGGGAAG+TGG 0.472388 6.1:+49099131 MS.gene069743:CDS
AGGAAAGGAGGAGGGTGTTA+CGG 0.473782 6.1:+49098360 MS.gene069743:CDS
AAGGAGGAAAGCGTTGCGAC+AGG 0.474553 6.1:+49097625 MS.gene069743:CDS
CCCCAATTTGTCCTCACGAC+CGG 0.475753 6.1:-49097545 None:intergenic
CGCAACGCTTTCCTCCTTCG+CGG 0.477471 6.1:-49097620 None:intergenic
TTCTGAAGAACCTTAACAAA+AGG 0.480552 6.1:-49100050 None:intergenic
GGATGCAGAAGTCAGAGATC+TGG 0.483257 6.1:+49097751 MS.gene069743:CDS
ATTCCAATCAAAAGCCGTTA+CGG 0.484756 6.1:+49098530 MS.gene069743:CDS
CGGTGATGGGTTAGGAAAGG+AGG 0.484788 6.1:+49098348 MS.gene069743:CDS
CGGGTCCATGGAGCCTTGAA+TGG 0.488430 6.1:+49100219 MS.gene069743:CDS
GGAATGAACGGTGATGGGTT+AGG 0.488487 6.1:+49098340 MS.gene069743:CDS
GAGCTTGTTGTAGACGAAGT+TGG 0.488629 6.1:+49099330 MS.gene069743:CDS
TAACAGCTGATCTATCAAAA+CGG 0.493253 6.1:-49098288 None:intergenic
CAAATTGAAACTGCTGCAGC+TGG 0.495171 6.1:+49097908 MS.gene069743:CDS
CAGAACCGTATTGTAGATGC+TGG 0.495247 6.1:+49098640 MS.gene069743:CDS
GCTGGATAAGGAGGAGTTGA+AGG 0.495387 6.1:+49098384 MS.gene069743:CDS
ATGGTATTCCAATACACGCT+TGG 0.498893 6.1:+49098845 MS.gene069743:CDS
CAGCTTTGTGTAGACGAAGT+TGG 0.499928 6.1:+49099684 MS.gene069743:CDS
GATTTGGTATGGGCGCGTAA+TGG 0.501701 6.1:+49098574 MS.gene069743:CDS
CACACGTGCAAAATCAAAAG+TGG 0.502006 6.1:-49098944 None:intergenic
TGTTAAGGTGGTGGAGAAGA+AGG 0.502131 6.1:+49098306 MS.gene069743:CDS
GGGATCGCTTGCGATCTTAC+CGG 0.505718 6.1:+49097510 MS.gene069743:CDS
ATGGAGGTCAAGACAGGCAT+AGG 0.507745 6.1:+49097651 MS.gene069743:CDS
GGGGCCTGCCATGGTTAACG+TGG 0.515520 6.1:+49098417 MS.gene069743:CDS
CAGCGGAGTCATGTTCACTT+GGG 0.515778 6.1:+49097800 MS.gene069743:CDS
ATTAAAATTGTTGAGGAATG+GGG 0.518151 6.1:+49099039 MS.gene069743:CDS
CATAAACGTTGCGTTTACTT+GGG 0.522526 6.1:-49098156 None:intergenic
TCGTCTACACAAAGCTGAGC+TGG 0.523022 6.1:-49099678 None:intergenic
CATTCTGAAAATGATGTTTG+TGG 0.525866 6.1:+49099120 MS.gene069743:CDS
AGAGAGTGGCCAAGAGAGAA+GGG 0.526755 6.1:+49097490 MS.gene069743:CDS
CTGCTGTGTTATTACCAACC+GGG 0.527397 6.1:+49099295 MS.gene069743:CDS
GAGAGAGTGGCCAAGAGAGA+AGG 0.528719 6.1:+49097489 MS.gene069743:CDS
TTTCAAAATTAAAATTGTTG+AGG 0.529505 6.1:+49099032 MS.gene069743:CDS
TCTGGATCGGAAAAGGGTTG+TGG 0.530978 6.1:+49097769 MS.gene069743:CDS
CAGAGATCTGGATCGGAAAA+GGG 0.531566 6.1:+49097763 MS.gene069743:CDS
AGGGTTATGGAGGTCAAGAC+AGG 0.534095 6.1:+49097645 MS.gene069743:CDS
ATAGGGAGATCAAGTGGCAT+AGG 0.534841 6.1:+49097669 MS.gene069743:CDS
TCAGCGGAGTCATGTTCACT+TGG 0.536762 6.1:+49097799 MS.gene069743:CDS
TGAGCTGGAGGCACCCCGGT+TGG 0.537792 6.1:-49099663 None:intergenic
TAATAGGAATGAACGGTGAT+GGG 0.538002 6.1:+49098335 MS.gene069743:CDS
TTTAACCATTCAAGGCTCCA+TGG 0.540410 6.1:-49100224 None:intergenic
GGAGGGGAAGTGGAGCATCT+TGG 0.541571 6.1:+49099141 MS.gene069743:CDS
TGCTTGCTTGACACTGACGA+TGG 0.542021 6.1:+49099084 MS.gene069743:CDS
CTGCTGTGTTATTATCAACC+GGG 0.542203 6.1:+49099826 MS.gene069743:CDS
CGGGATGTTAGAGGAGGTAG+TGG 0.542631 6.1:+49098132 MS.gene069743:CDS
CAACATTATGGGGCCTGCCA+TGG 0.543598 6.1:+49098408 MS.gene069743:CDS
TGATGGGTTAGGAAAGGAGG+AGG 0.544103 6.1:+49098351 MS.gene069743:CDS
TAGAAATTAGACAACTGAGC+TGG 0.551921 6.1:-49098085 None:intergenic
CAATTGAAGAGGATTTGGTA+TGG 0.552299 6.1:+49098563 MS.gene069743:CDS
GCTGTGAACGATGTGTGGTT+TGG 0.554495 6.1:+49098238 MS.gene069743:CDS
CAAAACCAGCATCTACAATA+CGG 0.555083 6.1:-49098645 None:intergenic
AGCGGAGTCATGTTCACTTG+GGG 0.561291 6.1:+49097801 MS.gene069743:CDS
AATTGAAGAGGATTTGGTAT+GGG 0.563340 6.1:+49098564 MS.gene069743:CDS
GGATAGGCGTGAGGATTACA+AGG 0.563904 6.1:+49097730 MS.gene069743:CDS
CTGAAAATGATGTTTGTGGA+GGG 0.565204 6.1:+49099124 MS.gene069743:CDS
CTGTTGTGAGTCCGCGAAGG+AGG 0.565717 6.1:+49097609 MS.gene069743:CDS
TAGATCAGCTGTTAAGGTGG+TGG 0.566244 6.1:+49098297 MS.gene069743:CDS
ATGAGAGCTATGAGAGAGAG+TGG 0.567131 6.1:+49097476 MS.gene069743:CDS
ACACCTGTTATCGGTACAGC+AGG 0.567437 6.1:-49099912 None:intergenic
TAATGGAGAGATTATTTCAG+TGG 0.569003 6.1:+49098615 MS.gene069743:CDS
TAGGGAGATCAAGTGGCATA+GGG 0.569646 6.1:+49097670 MS.gene069743:CDS
TTACCGGCGTTCATTCTCGC+CGG 0.570382 6.1:+49097526 MS.gene069743:CDS
GCTTGCTTGACACTGACGAT+GGG 0.570982 6.1:+49099085 MS.gene069743:CDS
GGGCCTGCCATGGTTAACGT+GGG 0.573384 6.1:+49098418 MS.gene069743:CDS
CTAATGGGTCAAGTATCAAA+CGG 0.573782 6.1:+49098035 MS.gene069743:CDS
GACAGTCAAGGTTTAGGGAT+AGG 0.575385 6.1:+49097714 MS.gene069743:CDS
CGAGCCTTGTTTACATGCAG+AGG 0.575728 6.1:+49100088 MS.gene069743:CDS
GAACGGTGATGGGTTAGGAA+AGG 0.577023 6.1:+49098345 MS.gene069743:CDS
TCAACTGGAGGCACCCCGGT+TGG 0.577988 6.1:-49099309 None:intergenic
GGGGAAAGGGAGCATCATAG+GGG 0.581325 6.1:+49097566 MS.gene069743:CDS
GGTGAACTGCGTGGAAAAGT+TGG 0.581955 6.1:+49098993 MS.gene069743:CDS
TGCACCTCTGCATGTAAACA+AGG 0.582645 6.1:-49100092 None:intergenic
AAGTTGAGCTAGAGGCAGCC+CGG 0.583259 6.1:-49099490 None:intergenic
GTTCATTCTCGCCGGTCGTG+AGG 0.584328 6.1:+49097534 MS.gene069743:CDS
TGAGCTAGAGGCAGCCCGGT+TGG 0.586164 6.1:-49099486 None:intergenic
AGGAGGAAAGCGTTGCGACA+GGG 0.589521 6.1:+49097626 MS.gene069743:CDS
GATGTTGTAATAGGAATGAA+CGG 0.590023 6.1:+49098328 MS.gene069743:CDS
AGCGGTGAAGACTAATGTAA+AGG 0.590683 6.1:+49098468 MS.gene069743:CDS
GATCTCGCAGTGGTATCTAT+GGG 0.592291 6.1:+49098670 MS.gene069743:CDS
AGTTGAAGGGCAACATTATG+GGG 0.595106 6.1:+49098398 MS.gene069743:CDS
GGCCTGCCATGGTTAACGTG+GGG 0.595528 6.1:+49098419 MS.gene069743:CDS
CAGAAGTCAGAGATCTGGAT+CGG 0.597792 6.1:+49097756 MS.gene069743:CDS
GTAATAGGAATGAACGGTGA+TGG 0.599895 6.1:+49098334 MS.gene069743:CDS
ACGACGAGGACCTGTTCTGA+AGG 0.602204 6.1:+49097832 MS.gene069743:CDS
TGCAACATCGTCTCTAGAAG+TGG 0.603504 6.1:+49098972 MS.gene069743:CDS
ATGGGCGCGTAATGGTTGTA+CGG 0.604882 6.1:+49098582 MS.gene069743:CDS
TGATAGATCAGCTGTTAAGG+TGG 0.604906 6.1:+49098294 MS.gene069743:CDS
GGTGAAGACTAATGTAAAGG+TGG 0.608134 6.1:+49098471 MS.gene069743:CDS
TGAAAATGATGTTTGTGGAG+GGG 0.612012 6.1:+49099125 MS.gene069743:CDS
GATGGGTTAGGAAAGGAGGA+GGG 0.613997 6.1:+49098352 MS.gene069743:CDS
TGTTACGGTGCTGGATAAGG+AGG 0.616298 6.1:+49098375 MS.gene069743:CDS
GTGAAGACTAATGTAAAGGT+GGG 0.617360 6.1:+49098472 MS.gene069743:CDS
TGGAGGTCAAGACAGGCATA+GGG 0.622392 6.1:+49097652 MS.gene069743:CDS
GATGTATAGATCAATTGAAG+AGG 0.623692 6.1:+49098552 MS.gene069743:CDS
ATTATGATTCTGGACAGTCA+AGG 0.624565 6.1:+49097702 MS.gene069743:CDS
AAGTAAACGCAACGTTTATG+GGG 0.625392 6.1:+49098159 MS.gene069743:CDS
GCCTGCCATGGTTAACGTGG+GGG 0.625848 6.1:+49098420 MS.gene069743:CDS
ATTGATCTATACATCCGTAA+CGG 0.628854 6.1:-49098544 None:intergenic
GCGTTGCGACAGGGTTATGG+AGG 0.629966 6.1:+49097635 MS.gene069743:CDS
AAGCTGAGCTGGAGGCACCC+CGG 0.631825 6.1:-49099667 None:intergenic
CTGGATAAGGAGGAGTTGAA+GGG 0.634222 6.1:+49098385 MS.gene069743:CDS
TGCTGTGTTATTACCAACCG+GGG 0.637529 6.1:+49099296 MS.gene069743:CDS
AAGGTTTAGGGATAGGCGTG+AGG 0.639785 6.1:+49097721 MS.gene069743:CDS
GGTTCCTCTGCATTTAGGAG+CGG 0.645076 6.1:+49098450 MS.gene069743:CDS
TGAAAGCTGTGAACGATGTG+TGG 0.645125 6.1:+49098233 MS.gene069743:CDS
TGCTGTGTTATTATCAACCG+GGG 0.645245 6.1:+49099827 MS.gene069743:CDS
TCTACACAAAGTTGAGCTAG+AGG 0.647662 6.1:-49099498 None:intergenic
CCGGTCGTGAGGACAAATTG+GGG 0.648307 6.1:+49097545 MS.gene069743:CDS
ATGGGGCTACAATTTGGGTG+AGG 0.648423 6.1:+49099056 MS.gene069743:CDS
GCGGAGTCATGTTCACTTGG+GGG 0.651056 6.1:+49097802 MS.gene069743:CDS
AGTGTGCGGGATGTTAGAGG+AGG 0.652538 6.1:+49098126 MS.gene069743:CDS
GGTCGTGAGGACAAATTGGG+GGG 0.656066 6.1:+49097547 MS.gene069743:CDS
TCTACACAAAGCTGAGCTGG+AGG 0.656163 6.1:-49099675 None:intergenic
ACAGGCATAGGGAGATCAAG+TGG 0.656629 6.1:+49097663 MS.gene069743:CDS
TTAGCTAACTCAGAACTGGA+AGG 0.657172 6.1:-49098016 None:intergenic
TCTGAAAATGATGTTTGTGG+AGG 0.660312 6.1:+49099123 MS.gene069743:CDS
AAGCTCAACTGGAGGCACCC+CGG 0.664397 6.1:-49099313 None:intergenic
GGACTGTTGTGAGTCCGCGA+AGG 0.664824 6.1:+49097606 MS.gene069743:CDS
AAGCTGAACTGGAGGCACCC+CGG 0.665764 6.1:-49099844 None:intergenic
CGGTCGTGAGGACAAATTGG+GGG 0.666136 6.1:+49097546 MS.gene069743:CDS
TCTACACAAAGCTGAACTGG+AGG 0.666580 6.1:-49099852 None:intergenic
TTCACCGCTCCTAAATGCAG+AGG 0.666791 6.1:-49098454 None:intergenic
TCTGCTGCATCATTACTGGA+CGG 0.673601 6.1:-49099990 None:intergenic
TAAACAAGGCTCGTCCTCAG+TGG 0.673993 6.1:-49100078 None:intergenic
TATTCGAAGATGGAATAAGG+AGG 0.675252 6.1:+49098786 MS.gene069743:CDS
TCTAGAAGTGGTGAACTGCG+TGG 0.695524 6.1:+49098984 MS.gene069743:CDS
TCTACAACAAGCTCAACTGG+AGG 0.714152 6.1:-49099321 None:intergenic
GGGTTGTGGATAAAGTTCAG+CGG 0.744172 6.1:+49097783 MS.gene069743:CDS
CGACCGGCGAGAATGAACGC+CGG 0.767025 6.1:-49097529 None:intergenic
TCTTCAGAACTGTACCACTG+AGG 0.794476 6.1:+49100064 MS.gene069743:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCAAAATTAAAATTGTTG+AGG + chr6.1:49099032-49099051 MS.gene069743:CDS 15.0%
!! AAATTAAAATTGTTGAGGAA+TGG + chr6.1:49099037-49099056 MS.gene069743:CDS 20.0%
!! AATTAAAATTGTTGAGGAAT+GGG + chr6.1:49099038-49099057 MS.gene069743:CDS 20.0%
!! TTTATATCAAACAAATGTTC+AGG - chr6.1:49099411-49099430 None:intergenic 20.0%
!!! AAGTTATGTGTTATTGATTT+TGG + chr6.1:49098883-49098902 MS.gene069743:CDS 20.0%
! AGAAATGAGCAAAAAAATCA+TGG - chr6.1:49098759-49098778 None:intergenic 25.0%
! ATTAAAATTGTTGAGGAATG+GGG + chr6.1:49099039-49099058 MS.gene069743:CDS 25.0%
! CAATATTCGAAGAACTAAAA+AGG - chr6.1:49098711-49098730 None:intergenic 25.0%
! GAAATGAGCAAAAAAATCAT+GGG - chr6.1:49098758-49098777 None:intergenic 25.0%
! TAATATTCGAAGATGGAATA+AGG + chr6.1:49098783-49098802 MS.gene069743:CDS 25.0%
! TCTAATTTCTATCTTCGTAA+AGG + chr6.1:49098097-49098116 MS.gene069743:CDS 25.0%
! TGGAAAATTGGTGAAATAAA+AGG - chr6.1:49098068-49098087 None:intergenic 25.0%
! TTTACATCCAAAAAATGTTC+AGG - chr6.1:49099765-49099784 None:intergenic 25.0%
! TTTACATCCAATATATGTTC+AGG - chr6.1:49099588-49099607 None:intergenic 25.0%
!! TCTTTTCTAATATTCGAAGA+TGG + chr6.1:49098776-49098795 MS.gene069743:CDS 25.0%
!! TTTTTCCAATGTTAAAGATG+TGG + chr6.1:49098201-49098220 MS.gene069743:CDS 25.0%
!!! TTGATTTTGGTAGATTTTTG+CGG + chr6.1:49098896-49098915 MS.gene069743:CDS 25.0%
AGGCTTCAAAAAATCTAGAA+GGG + chr6.1:49098500-49098519 MS.gene069743:CDS 30.0%
ATTGATCTATACATCCGTAA+CGG - chr6.1:49098547-49098566 None:intergenic 30.0%
GATGTATAGATCAATTGAAG+AGG + chr6.1:49098552-49098571 MS.gene069743:CDS 30.0%
GATGTTGTAATAGGAATGAA+CGG + chr6.1:49098328-49098347 MS.gene069743:CDS 30.0%
TAACAGCTGATCTATCAAAA+CGG - chr6.1:49098291-49098310 None:intergenic 30.0%
TAATGGAGAGATTATTTCAG+TGG + chr6.1:49098615-49098634 MS.gene069743:CDS 30.0%
TAGATCAATTGAAGAGGATT+TGG + chr6.1:49098558-49098577 MS.gene069743:CDS 30.0%
TGCTAATTTAGATGTTTCTC+AGG + chr6.1:49099212-49099231 MS.gene069743:CDS 30.0%
TTGACAATTATGCAAAACAG+CGG - chr6.1:49100150-49100169 None:intergenic 30.0%
! AATTGAAGAGGATTTGGTAT+GGG + chr6.1:49098564-49098583 MS.gene069743:CDS 30.0%
! CAAATTTTGCCTCAAATTGA+TGG + chr6.1:49100116-49100135 MS.gene069743:intron 30.0%
! CAATTCTGATCCTTTTGTTA+AGG + chr6.1:49100040-49100059 MS.gene069743:CDS 30.0%
! CATTCTGAAAATGATGTTTG+TGG + chr6.1:49099120-49099139 MS.gene069743:CDS 30.0%
! TGTTAATGCTGATTGTTTAG+TGG + chr6.1:49099164-49099183 MS.gene069743:CDS 30.0%
! TTCAATTTGCTTCTGTTTGT+TGG - chr6.1:49097897-49097916 None:intergenic 30.0%
! TTCTGAAGAACCTTAACAAA+AGG - chr6.1:49100053-49100072 None:intergenic 30.0%
! TTTAGTGGACAAGATAGTTA+AGG + chr6.1:49099179-49099198 MS.gene069743:CDS 30.0%
! TTTTGATAGATCAGCTGTTA+AGG + chr6.1:49098291-49098310 MS.gene069743:CDS 30.0%
!! TAATTTTCGTGTTTTTGCGA+AGG + chr6.1:49098261-49098280 MS.gene069743:CDS 30.0%
!!! TCACATTTTGAAGCACATAT+TGG + chr6.1:49099888-49099907 MS.gene069743:CDS 30.0%
AACAGCTGATCTATCAAAAC+GGG - chr6.1:49098290-49098309 None:intergenic 35.0%
AAGTAAACGCAACGTTTATG+GGG + chr6.1:49098159-49098178 MS.gene069743:CDS 35.0%
ATTATGATTCTGGACAGTCA+AGG + chr6.1:49097702-49097721 MS.gene069743:CDS 35.0%
ATTCCAATCAAAAGCCGTTA+CGG + chr6.1:49098530-49098549 MS.gene069743:CDS 35.0%
CAAAACCAGCATCTACAATA+CGG - chr6.1:49098648-49098667 None:intergenic 35.0%
CAAGTAAACGCAACGTTTAT+GGG + chr6.1:49098158-49098177 MS.gene069743:CDS 35.0%
CAGGCTTCAAAAAATCTAGA+AGG + chr6.1:49098499-49098518 MS.gene069743:CDS 35.0%
CATAAACGTTGCGTTTACTT+GGG - chr6.1:49098159-49098178 None:intergenic 35.0%
CTGAAAATGATGTTTGTGGA+GGG + chr6.1:49099124-49099143 MS.gene069743:CDS 35.0%
CTTGTCCACATCTTTAACAT+TGG - chr6.1:49098209-49098228 None:intergenic 35.0%
GAGAAGAAGGATGTTGTAAT+AGG + chr6.1:49098319-49098338 MS.gene069743:CDS 35.0%
GTGAAGACTAATGTAAAGGT+GGG + chr6.1:49098472-49098491 MS.gene069743:CDS 35.0%
TAATAGGAATGAACGGTGAT+GGG + chr6.1:49098335-49098354 MS.gene069743:CDS 35.0%
TAGAAATTAGACAACTGAGC+TGG - chr6.1:49098088-49098107 None:intergenic 35.0%
TATTCGAAGATGGAATAAGG+AGG + chr6.1:49098786-49098805 MS.gene069743:CDS 35.0%
TCACATTATGAAGCTCATCT+TGG + chr6.1:49099711-49099730 MS.gene069743:CDS 35.0%
TCTGAAAATGATGTTTGTGG+AGG + chr6.1:49099123-49099142 MS.gene069743:CDS 35.0%
TGAAAATGATGTTTGTGGAG+GGG + chr6.1:49099125-49099144 MS.gene069743:CDS 35.0%
TGCATCCTTAAAAACATGCT+CGG - chr6.1:49099961-49099980 None:intergenic 35.0%
TGCTGTTCCTGAACATATAT+TGG + chr6.1:49099578-49099597 MS.gene069743:CDS 35.0%
TTATCTACACAAAGCTGAAC+TGG - chr6.1:49099858-49099877 None:intergenic 35.0%
! CAATTGAAGAGGATTTGGTA+TGG + chr6.1:49098563-49098582 MS.gene069743:CDS 35.0%
! CTAATGGGTCAAGTATCAAA+CGG + chr6.1:49098035-49098054 MS.gene069743:CDS 35.0%
! GTGGAAAAGTTGGTTATTGA+TGG + chr6.1:49099003-49099022 MS.gene069743:CDS 35.0%
!! GATGTCTTTCAAGTTCTTGA+AGG + chr6.1:49098730-49098749 MS.gene069743:CDS 35.0%
!!! TGCTGTTCCTGAACATTTTT+TGG + chr6.1:49099755-49099774 MS.gene069743:CDS 35.0%
!!! TTTTGATTTTGCACGTGTGT+TGG + chr6.1:49098948-49098967 MS.gene069743:CDS 35.0%
AACGTTTATGGGGCAGTTTA+CGG + chr6.1:49098169-49098188 MS.gene069743:CDS 40.0%
AATCGTCTTCTTGTCCAATC+CGG + chr6.1:49100177-49100196 MS.gene069743:intron 40.0%
ACAGGAACAACACCTGTTAT+CGG - chr6.1:49099924-49099943 None:intergenic 40.0%
AGACAACTGAGCTGGAAAAT+TGG - chr6.1:49098080-49098099 None:intergenic 40.0%
AGCGGTGAAGACTAATGTAA+AGG + chr6.1:49098468-49098487 MS.gene069743:CDS 40.0%
AGTTGAAGGGCAACATTATG+GGG + chr6.1:49098398-49098417 MS.gene069743:CDS 40.0%
ATACAGAAGAACAAGCTGTC+CGG - chr6.1:49100199-49100218 None:intergenic 40.0%
ATGGTATTCCAATACACGCT+TGG + chr6.1:49098845-49098864 MS.gene069743:CDS 40.0%
ATTCTGGACAGTCAAGGTTT+AGG + chr6.1:49097708-49097727 MS.gene069743:CDS 40.0%
CAACTTTGTGTAGACGAAGT+TGG + chr6.1:49099507-49099526 MS.gene069743:CDS 40.0%
CACACGTGCAAAATCAAAAG+TGG - chr6.1:49098947-49098966 None:intergenic 40.0%
CCAAGTAAACGCAACGTTTA+TGG + chr6.1:49098157-49098176 MS.gene069743:CDS 40.0%
CCATAAACGTTGCGTTTACT+TGG - chr6.1:49098160-49098179 None:intergenic 40.0%
GAGTTGAAGGGCAACATTAT+GGG + chr6.1:49098397-49098416 MS.gene069743:CDS 40.0%
GATTGGGCTGATTATGATTC+TGG + chr6.1:49097692-49097711 MS.gene069743:CDS 40.0%
GGTGAAGACTAATGTAAAGG+TGG + chr6.1:49098471-49098490 MS.gene069743:CDS 40.0%
GTAATAGGAATGAACGGTGA+TGG + chr6.1:49098334-49098353 MS.gene069743:CDS 40.0%
TCTACACAAAGTTGAGCTAG+AGG - chr6.1:49099501-49099520 None:intergenic 40.0%
TGATAGATCAGCTGTTAAGG+TGG + chr6.1:49098294-49098313 MS.gene069743:CDS 40.0%
TGTACGGCTTCAGTGATTAA+TGG + chr6.1:49098598-49098617 MS.gene069743:CDS 40.0%
TTAGCTAACTCAGAACTGGA+AGG - chr6.1:49098019-49098038 None:intergenic 40.0%
TTCTGGACAGTCAAGGTTTA+GGG + chr6.1:49097709-49097728 MS.gene069743:CDS 40.0%
! ACAGCTTGTTCTTCTGTATC+GGG + chr6.1:49100200-49100219 MS.gene069743:intron 40.0%
! CTGCTGTGTTATTATCAACC+GGG + chr6.1:49099826-49099845 MS.gene069743:CDS 40.0%
! GACAGCTTGTTCTTCTGTAT+CGG + chr6.1:49100199-49100218 MS.gene069743:intron 40.0%
! GAGGTAGTTTCTTTTCAGAG+AGG + chr6.1:49098805-49098824 MS.gene069743:CDS 40.0%
! GCTGCTGTGTTATTATCAAC+CGG + chr6.1:49099825-49099844 MS.gene069743:CDS 40.0%
! TGCTGTGTTATTATCAACCG+GGG + chr6.1:49099827-49099846 MS.gene069743:CDS 40.0%
! TTTCTTTTCAGAGAGGAGCT+TGG + chr6.1:49098812-49098831 MS.gene069743:CDS 40.0%
!! ATCAGCCGAGCATGTTTTTA+AGG + chr6.1:49099953-49099972 MS.gene069743:CDS 40.0%
!! CCAGTTCTGAGTTAGCTAAT+GGG + chr6.1:49098020-49098039 MS.gene069743:CDS 40.0%
!! TCCAGTTCTGAGTTAGCTAA+TGG + chr6.1:49098019-49098038 MS.gene069743:CDS 40.0%
!! TTGCCTCAAATTGATGGTGT+AGG + chr6.1:49100122-49100141 MS.gene069743:intron 40.0%
!!! CGTAAAGGTTTTGAAGTGTG+CGG + chr6.1:49098112-49098131 MS.gene069743:CDS 40.0%
!!! GTAAAGGTTTTGAAGTGTGC+GGG + chr6.1:49098113-49098132 MS.gene069743:CDS 40.0%
AGACTCTGCTGCATCATTAC+TGG - chr6.1:49099997-49100016 None:intergenic 45.0%
AGATCAAGTGGCATAGGGAT+TGG + chr6.1:49097675-49097694 MS.gene069743:CDS 45.0%
AGATCTCGCAGTGGTATCTA+TGG + chr6.1:49098669-49098688 MS.gene069743:CDS 45.0%
ATAGGGAGATCAAGTGGCAT+AGG + chr6.1:49097669-49097688 MS.gene069743:CDS 45.0%
ATGAGAGCTATGAGAGAGAG+TGG + chr6.1:49097476-49097495 MS.gene069743:CDS 45.0%
CAAATTGAAACTGCTGCAGC+TGG + chr6.1:49097908-49097927 MS.gene069743:CDS 45.0%
CAGAACCGTATTGTAGATGC+TGG + chr6.1:49098640-49098659 MS.gene069743:CDS 45.0%
CAGAAGTCAGAGATCTGGAT+CGG + chr6.1:49097756-49097775 MS.gene069743:CDS 45.0%
CAGAGATCTGGATCGGAAAA+GGG + chr6.1:49097763-49097782 MS.gene069743:CDS 45.0%
CAGCATCTACAATACGGTTC+TGG - chr6.1:49098642-49098661 None:intergenic 45.0%
CCCATTAGCTAACTCAGAAC+TGG - chr6.1:49098023-49098042 None:intergenic 45.0%
CTGGATAAGGAGGAGTTGAA+GGG + chr6.1:49098385-49098404 MS.gene069743:CDS 45.0%
GACAGTCAAGGTTTAGGGAT+AGG + chr6.1:49097714-49097733 MS.gene069743:CDS 45.0%
GAGCCTACACCATCAATTTG+AGG - chr6.1:49100128-49100147 None:intergenic 45.0%
GAGGAATGGGGCTACAATTT+GGG + chr6.1:49099051-49099070 MS.gene069743:CDS 45.0%
GATCAAGTGGCATAGGGATT+GGG + chr6.1:49097676-49097695 MS.gene069743:CDS 45.0%
GATCTCGCAGTGGTATCTAT+GGG + chr6.1:49098670-49098689 MS.gene069743:CDS 45.0%
GATTCGTTCCAAGCGTGTAT+TGG - chr6.1:49098856-49098875 None:intergenic 45.0%
GGAGCTTGGCTGAGATTATA+TGG + chr6.1:49098826-49098845 MS.gene069743:CDS 45.0%
GGAGTTGAAGGGCAACATTA+TGG + chr6.1:49098396-49098415 MS.gene069743:CDS 45.0%
GGGTTGTGGATAAAGTTCAG+CGG + chr6.1:49097783-49097802 MS.gene069743:CDS 45.0%
GTAAGGGTTCCTCTGCATTT+AGG + chr6.1:49098445-49098464 MS.gene069743:CDS 45.0%
TAATGTAAAGGTGGGTCAGC+AGG + chr6.1:49098480-49098499 MS.gene069743:CDS 45.0%
TAGATCAGCTGTTAAGGTGG+TGG + chr6.1:49098297-49098316 MS.gene069743:CDS 45.0%
TAGGGAGATCAAGTGGCATA+GGG + chr6.1:49097670-49097689 MS.gene069743:CDS 45.0%
TCAGAGATCTGGATCGGAAA+AGG + chr6.1:49097762-49097781 MS.gene069743:CDS 45.0%
TCGGCTGATGTAGAACTTAC+AGG - chr6.1:49099942-49099961 None:intergenic 45.0%
TCGTCTACAACAAGCTCAAC+TGG - chr6.1:49099327-49099346 None:intergenic 45.0%
TCTACAACAAGCTCAACTGG+AGG - chr6.1:49099324-49099343 None:intergenic 45.0%
TCTACACAAAGCTGAACTGG+AGG - chr6.1:49099855-49099874 None:intergenic 45.0%
TCTGCTGCATCATTACTGGA+CGG - chr6.1:49099993-49100012 None:intergenic 45.0%
TCTTCAGAACTGTACCACTG+AGG + chr6.1:49100064-49100083 MS.gene069743:CDS 45.0%
TGAAAGCTGTGAACGATGTG+TGG + chr6.1:49098233-49098252 MS.gene069743:CDS 45.0%
TGAGGAATGGGGCTACAATT+TGG + chr6.1:49099050-49099069 MS.gene069743:CDS 45.0%
TGCACCTCTGCATGTAAACA+AGG - chr6.1:49100095-49100114 None:intergenic 45.0%
! CAGCTTTGTGTAGACGAAGT+TGG + chr6.1:49099684-49099703 MS.gene069743:CDS 45.0%
! CATCCGTAACGGCTTTTGAT+TGG - chr6.1:49098536-49098555 None:intergenic 45.0%
! CTGCTGTGTTATTACCAACC+GGG + chr6.1:49099295-49099314 MS.gene069743:CDS 45.0%
! GCTGCTGTGTTATTACCAAC+CGG + chr6.1:49099294-49099313 MS.gene069743:CDS 45.0%
! TGCAACATCGTCTCTAGAAG+TGG + chr6.1:49098972-49098991 MS.gene069743:CDS 45.0%
! TGCTGTGTTATTACCAACCG+GGG + chr6.1:49099296-49099315 MS.gene069743:CDS 45.0%
!! GAGCTTGTTGTAGACGAAGT+TGG + chr6.1:49099330-49099349 MS.gene069743:CDS 45.0%
!! TCAGGAACAGCAGCTGTTTT+CGG - chr6.1:49099393-49099412 None:intergenic 45.0%
!! TCAGGAACAGCAGCTGTTTT+TGG - chr6.1:49099393-49099412 None:intergenic 45.0%
!! TGTTAAGGTGGTGGAGAAGA+AGG + chr6.1:49098306-49098325 MS.gene069743:CDS 45.0%
!!! TGGTTTTGAAGATCTCGCAG+TGG + chr6.1:49098660-49098679 MS.gene069743:CDS 45.0%
AAGGTTTAGGGATAGGCGTG+AGG + chr6.1:49097721-49097740 MS.gene069743:CDS 50.0%
ACACCTGTTATCGGTACAGC+AGG - chr6.1:49099915-49099934 None:intergenic 50.0%
ACAGGCATAGGGAGATCAAG+TGG + chr6.1:49097663-49097682 MS.gene069743:CDS 50.0%
AGAGAGTGGCCAAGAGAGAA+GGG + chr6.1:49097490-49097509 MS.gene069743:CDS 50.0%
AGCGGAGTCATGTTCACTTG+GGG + chr6.1:49097801-49097820 MS.gene069743:CDS 50.0%
AGGGTTATGGAGGTCAAGAC+AGG + chr6.1:49097645-49097664 MS.gene069743:CDS 50.0%
ATGGAGGTCAAGACAGGCAT+AGG + chr6.1:49097651-49097670 MS.gene069743:CDS 50.0%
ATGGGCGCGTAATGGTTGTA+CGG + chr6.1:49098582-49098601 MS.gene069743:CDS 50.0%
ATGGGGCTACAATTTGGGTG+AGG + chr6.1:49099056-49099075 MS.gene069743:CDS 50.0%
CAGCGGAGTCATGTTCACTT+GGG + chr6.1:49097800-49097819 MS.gene069743:CDS 50.0%
CGTCGTAACACCTTCAGAAC+AGG - chr6.1:49097845-49097864 None:intergenic 50.0%
GAAGAACAAGCTGTCCGGAT+TGG - chr6.1:49100194-49100213 None:intergenic 50.0%
GAGGACAAATTGGGGGGAAA+GGG + chr6.1:49097553-49097572 MS.gene069743:CDS 50.0%
GATGCAGCAGAGTCTCTTGA+TGG + chr6.1:49100002-49100021 MS.gene069743:CDS 50.0%
GCTGGATAAGGAGGAGTTGA+AGG + chr6.1:49098384-49098403 MS.gene069743:CDS 50.0%
GCTGTGAACGATGTGTGGTT+TGG + chr6.1:49098238-49098257 MS.gene069743:CDS 50.0%
GCTTGCTTGACACTGACGAT+GGG + chr6.1:49099085-49099104 MS.gene069743:CDS 50.0%
GGATAGGCGTGAGGATTACA+AGG + chr6.1:49097730-49097749 MS.gene069743:CDS 50.0%
GGATGCAGAAGTCAGAGATC+TGG + chr6.1:49097751-49097770 MS.gene069743:CDS 50.0%
GGTGAACTGCGTGGAAAAGT+TGG + chr6.1:49098993-49099012 MS.gene069743:CDS 50.0%
GGTTAACGTGGGGGATGTAA+GGG + chr6.1:49098429-49098448 MS.gene069743:CDS 50.0%
GGTTCCTCTGCATTTAGGAG+CGG + chr6.1:49098450-49098469 MS.gene069743:CDS 50.0%
GTTCTTCTGTATCGGGTCCA+TGG + chr6.1:49100207-49100226 MS.gene069743:CDS 50.0%
TAAACAAGGCTCGTCCTCAG+TGG - chr6.1:49100081-49100100 None:intergenic 50.0%
TACATCCCCCACGTTAACCA+TGG - chr6.1:49098428-49098447 None:intergenic 50.0%
TCAGCGGAGTCATGTTCACT+TGG + chr6.1:49097799-49097818 MS.gene069743:CDS 50.0%
TCATGTTCACTTGGGGGAAG+AGG + chr6.1:49097808-49097827 MS.gene069743:CDS 50.0%
TCGTCTACACAAAGCTGAGC+TGG - chr6.1:49099681-49099700 None:intergenic 50.0%
TCTACACAAAGCTGAGCTGG+AGG - chr6.1:49099678-49099697 None:intergenic 50.0%
TCTAGAAGTGGTGAACTGCG+TGG + chr6.1:49098984-49099003 MS.gene069743:CDS 50.0%
TCTGGATCGGAAAAGGGTTG+TGG + chr6.1:49097769-49097788 MS.gene069743:CDS 50.0%
TGAAGTGTGCGGGATGTTAG+AGG + chr6.1:49098123-49098142 MS.gene069743:CDS 50.0%
TGAGGACAAATTGGGGGGAA+AGG + chr6.1:49097552-49097571 MS.gene069743:CDS 50.0%
TGATGTTTGTGGAGGGGAAG+TGG + chr6.1:49099131-49099150 MS.gene069743:CDS 50.0%
TGCTTGCTTGACACTGACGA+TGG + chr6.1:49099084-49099103 MS.gene069743:CDS 50.0%
TGGAGGTCAAGACAGGCATA+GGG + chr6.1:49097652-49097671 MS.gene069743:CDS 50.0%
TGGTTAACGTGGGGGATGTA+AGG + chr6.1:49098428-49098447 MS.gene069743:CDS 50.0%
TTCACCGCTCCTAAATGCAG+AGG - chr6.1:49098457-49098476 None:intergenic 50.0%
! CTGCTGCGTTTTTACCAACC+GGG + chr6.1:49099472-49099491 MS.gene069743:CDS 50.0%
! GATTTGGTATGGGCGCGTAA+TGG + chr6.1:49098574-49098593 MS.gene069743:CDS 50.0%
! GCGGTCTGATAGCGTTTCTT+TGG + chr6.1:49098915-49098934 MS.gene069743:CDS 50.0%
! GCTGCTGCGTTTTTACCAAC+CGG + chr6.1:49099471-49099490 MS.gene069743:CDS 50.0%
! TGTTACGGTGCTGGATAAGG+AGG + chr6.1:49098375-49098394 MS.gene069743:CDS 50.0%
!! AAAGCGTTGCGACAGGGTTA+TGG + chr6.1:49097632-49097651 MS.gene069743:CDS 50.0%
!! AGGAAAGGAGGAGGGTGTTA+CGG + chr6.1:49098360-49098379 MS.gene069743:CDS 50.0%
!! CGAGCCTTGTTTACATGCAG+AGG + chr6.1:49100088-49100107 MS.gene069743:CDS 50.0%
!! GAACGGTGATGGGTTAGGAA+AGG + chr6.1:49098345-49098364 MS.gene069743:CDS 50.0%
!! GATGGGTTAGGAAAGGAGGA+GGG + chr6.1:49098352-49098371 MS.gene069743:CDS 50.0%
!! GCAGCTGTTTTCGGAACAGT+AGG - chr6.1:49099384-49099403 None:intergenic 50.0%
!! GGAATGAACGGTGATGGGTT+AGG + chr6.1:49098340-49098359 MS.gene069743:CDS 50.0%
!! TGATGGGTTAGGAAAGGAGG+AGG + chr6.1:49098351-49098370 MS.gene069743:CDS 50.0%
AAGTTGAGCTAGAGGCAGCC+CGG - chr6.1:49099493-49099512 None:intergenic 55.0%
ACGACGAGGACCTGTTCTGA+AGG + chr6.1:49097832-49097851 MS.gene069743:CDS 55.0%
AGTGTGCGGGATGTTAGAGG+AGG + chr6.1:49098126-49098145 MS.gene069743:CDS 55.0%
CAACATTATGGGGCCTGCCA+TGG + chr6.1:49098408-49098427 MS.gene069743:CDS 55.0%
CCCCAATTTGTCCTCACGAC+CGG - chr6.1:49097548-49097567 None:intergenic 55.0%
CCGGTCGTGAGGACAAATTG+GGG + chr6.1:49097545-49097564 MS.gene069743:CDS 55.0%
CGGGATGTTAGAGGAGGTAG+TGG + chr6.1:49098132-49098151 MS.gene069743:CDS 55.0%
CGGTCGTGAGGACAAATTGG+GGG + chr6.1:49097546-49097565 MS.gene069743:CDS 55.0%
GAGAGAGTGGCCAAGAGAGA+AGG + chr6.1:49097489-49097508 MS.gene069743:CDS 55.0%
GCAAGCGATCCCTTCTCTCT+TGG - chr6.1:49097502-49097521 None:intergenic 55.0%
GCCGGTCGTGAGGACAAATT+GGG + chr6.1:49097544-49097563 MS.gene069743:CDS 55.0%
GCGGAGTCATGTTCACTTGG+GGG + chr6.1:49097802-49097821 MS.gene069743:CDS 55.0%
GGGATCGCTTGCGATCTTAC+CGG + chr6.1:49097510-49097529 MS.gene069743:CDS 55.0%
GGTCGTGAGGACAAATTGGG+GGG + chr6.1:49097547-49097566 MS.gene069743:CDS 55.0%
TTACCGGCGTTCATTCTCGC+CGG + chr6.1:49097526-49097545 MS.gene069743:CDS 55.0%
! CTGCTGCGCTTTTACCAACC+GGG + chr6.1:49099649-49099668 MS.gene069743:CDS 55.0%
! GCTGCTGCGCTTTTACCAAC+CGG + chr6.1:49099648-49099667 MS.gene069743:CDS 55.0%
! GGGTGTTACGGTGCTGGATA+AGG + chr6.1:49098372-49098391 MS.gene069743:CDS 55.0%
! GGTCCTGCTGTACCGATAAC+AGG + chr6.1:49099909-49099928 MS.gene069743:CDS 55.0%
! TGCTGCGCTTTTACCAACCG+GGG + chr6.1:49099650-49099669 MS.gene069743:CDS 55.0%
!! AAGGAGGAAAGCGTTGCGAC+AGG + chr6.1:49097625-49097644 MS.gene069743:CDS 55.0%
!! AGGAGGAAAGCGTTGCGACA+GGG + chr6.1:49097626-49097645 MS.gene069743:CDS 55.0%
!! CGGTGATGGGTTAGGAAAGG+AGG + chr6.1:49098348-49098367 MS.gene069743:CDS 55.0%
!! GCAGCTGTTTTCGGTACAGC+AGG - chr6.1:49099738-49099757 None:intergenic 55.0%
!! GGGGAAAGGGAGCATCATAG+GGG + chr6.1:49097566-49097585 MS.gene069743:CDS 55.0%
!! GGGGGAAAGGGAGCATCATA+GGG + chr6.1:49097565-49097584 MS.gene069743:CDS 55.0%
CGCAACGCTTTCCTCCTTCG+CGG - chr6.1:49097623-49097642 None:intergenic 60.0%
CGCCGGTCGTGAGGACAAAT+TGG + chr6.1:49097543-49097562 MS.gene069743:CDS 60.0%
CGGGTCCATGGAGCCTTGAA+TGG + chr6.1:49100219-49100238 MS.gene069743:CDS 60.0%
CTGTTGTGAGTCCGCGAAGG+AGG + chr6.1:49097609-49097628 MS.gene069743:CDS 60.0%
GCCTGCCATGGTTAACGTGG+GGG + chr6.1:49098420-49098439 MS.gene069743:CDS 60.0%
GCGTTGCGACAGGGTTATGG+AGG + chr6.1:49097635-49097654 MS.gene069743:CDS 60.0%
GGACTGTTGTGAGTCCGCGA+AGG + chr6.1:49097606-49097625 MS.gene069743:CDS 60.0%
GGCCTGCCATGGTTAACGTG+GGG + chr6.1:49098419-49098438 MS.gene069743:CDS 60.0%
GGGCCTGCCATGGTTAACGT+GGG + chr6.1:49098418-49098437 MS.gene069743:CDS 60.0%
GTTCATTCTCGCCGGTCGTG+AGG + chr6.1:49097534-49097553 MS.gene069743:CDS 60.0%
TCCCCCACGTTAACCATGGC+AGG - chr6.1:49098424-49098443 None:intergenic 60.0%
TTGGGGGAAGAGGAACGACG+AGG + chr6.1:49097818-49097837 MS.gene069743:CDS 60.0%
! GGAGGGGAAGTGGAGCATCT+TGG + chr6.1:49099141-49099160 MS.gene069743:CDS 60.0%
! GGGGAGAGAGCGTAGATGAC+TGG + chr6.1:49097585-49097604 MS.gene069743:CDS 60.0%
!! AAGCTCAACTGGAGGCACCC+CGG - chr6.1:49099316-49099335 None:intergenic 60.0%
!! AAGCTGAACTGGAGGCACCC+CGG - chr6.1:49099847-49099866 None:intergenic 60.0%
!! GGGGGGAAAGGGAGCATCAT+AGG + chr6.1:49097564-49097583 MS.gene069743:CDS 60.0%
CGACCGGCGAGAATGAACGC+CGG - chr6.1:49097532-49097551 None:intergenic 65.0%
GGGGCCTGCCATGGTTAACG+TGG + chr6.1:49098417-49098436 MS.gene069743:CDS 65.0%
TGAGCTAGAGGCAGCCCGGT+TGG - chr6.1:49099489-49099508 None:intergenic 65.0%
!! AAGCTGAGCTGGAGGCACCC+CGG - chr6.1:49099670-49099689 None:intergenic 65.0%
!! GGAGGAGGGTGTTACGGTGC+TGG + chr6.1:49098366-49098385 MS.gene069743:CDS 65.0%
!! TCAACTGGAGGCACCCCGGT+TGG - chr6.1:49099312-49099331 None:intergenic 65.0%
!! TGAGCTGGAGGCACCCCGGT+TGG - chr6.1:49099666-49099685 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 49097476 49100245 49097476 ID=MS.gene069743
chr6.1 mRNA 49097476 49100245 49097476 ID=MS.gene069743.t1;Parent=MS.gene069743
chr6.1 exon 49097476 49100109 49097476 ID=MS.gene069743.t1.exon1;Parent=MS.gene069743.t1
chr6.1 CDS 49097476 49100109 49097476 ID=cds.MS.gene069743.t1;Parent=MS.gene069743.t1
chr6.1 exon 49100204 49100245 49100204 ID=MS.gene069743.t1.exon2;Parent=MS.gene069743.t1
chr6.1 CDS 49100204 49100245 49100204 ID=cds.MS.gene069743.t1;Parent=MS.gene069743.t1
Gene Sequence

>MS.gene069743

ATGAGAGCTATGAGAGAGAGTGGCCAAGAGAGAAGGGATCGCTTGCGATCTTACCGGCGTTCATTCTCGCCGGTCGTGAGGACAAATTGGGGGGAAAGGGAGCATCATAGGGGAGAGAGCGTAGATGACTGGACTGTTGTGAGTCCGCGAAGGAGGAAAGCGTTGCGACAGGGTTATGGAGGTCAAGACAGGCATAGGGAGATCAAGTGGCATAGGGATTGGGCTGATTATGATTCTGGACAGTCAAGGTTTAGGGATAGGCGTGAGGATTACAAGGATGCAGAAGTCAGAGATCTGGATCGGAAAAGGGTTGTGGATAAAGTTCAGCGGAGTCATGTTCACTTGGGGGAAGAGGAACGACGAGGACCTGTTCTGAAGGTGTTACGACGTGTAGCTATTTGTGTTCGAAAGATTGACTCCAACAAACAGAAGCAAATTGAAACTGCTGCAGCTGGTTGTTCTTCTCAACAACTCTCTAACAAACAGAAGCTAATCGAAAATAGAGCAGCTGATTGTTCTTCTCAACAACTTCAGTCAGCACCTTCCAGTTCTGAGTTAGCTAATGGGTCAAGTATCAAACGGTTCGTAACCTTTTATTTCACCAATTTTCCAGCTCAGTTGTCTAATTTCTATCTTCGTAAAGGTTTTGAAGTGTGCGGGATGTTAGAGGAGGTAGTGGTCCCAAGTAAACGCAACGTTTATGGGGCAGTTTACGGTTTTGTTCGTTTTTCCAATGTTAAAGATGTGGACAAGTTGTTGAAAGCTGTGAACGATGTGTGGTTTGGTAATTTTCGTGTTTTTGCGAAGGTTGCCCGTTTTGATAGATCAGCTGTTAAGGTGGTGGAGAAGAAGGATGTTGTAATAGGAATGAACGGTGATGGGTTAGGAAAGGAGGAGGGTGTTACGGTGCTGGATAAGGAGGAGTTGAAGGGCAACATTATGGGGCCTGCCATGGTTAACGTGGGGGATGTAAGGGTTCCTCTGCATTTAGGAGCGGTGAAGACTAATGTAAAGGTGGGTCAGCAGGCTTCAAAAAATCTAGAAGGGTGTCTTCATTCCAATCAAAAGCCGTTACGGATGTATAGATCAATTGAAGAGGATTTGGTATGGGCGCGTAATGGTTGTACGGCTTCAGTGATTAATGGAGAGATTATTTCAGTGGTCCAGAACCGTATTGTAGATGCTGGTTTTGAAGATCTCGCAGTGGTATCTATGGGTGCAGACAGAGTTTTCCTTTTTAGTTCTTCGAATATTGATGTCTTTCAAGTTCTTGAAGGTGCCCATGATTTTTTTGCTCATTTCTTTTCTAATATTCGAAGATGGAATAAGGAGGTAGTTTCTTTTCAGAGAGGAGCTTGGCTGAGATTATATGGTATTCCAATACACGCTTGGAACGAATCTTTCTTTAAGTTATGTGTTATTGATTTTGGTAGATTTTTGCGGTCTGATAGCGTTTCTTTGGATAAATCCACTTTTGATTTTGCACGTGTGTTGGTTGCAACATCGTCTCTAGAAGTGGTGAACTGCGTGGAAAAGTTGGTTATTGATGGTCAAACTTTCAAAATTAAAATTGTTGAGGAATGGGGCTACAATTTGGGTGAGGATGCATGCTTGCTTGACACTGACGATGGGTTACAATCGACGCATTCTGAAAATGATGTTTGTGGAGGGGAAGTGGAGCATCTTGGTGTTAATGCTGATTGTTTAGTGGACAAGATAGTTAAGGAGTTGTCAGATGCTAATTTAGATGTTTCTCAGGAACATTTGTTTGATGTTAAAGCTGCTGCAGTTGATATAAATGAGCAGATTGATGCTTCAGCTGCTGTGTTATTACCAACCGGGGTGCCTCCAGTTGAGCTTGTTGTAGACGAAGTTGGATTATCACATTCTGAAGCTCATCATGCTCCTACTGTTCCGAAAACAGCTGCTGTTCCTGAACATTTGTTTGATATAAAAGCTGCTGCAGTTGATATAAATGAGCAGATTGATGCTTCAGCTGCTGCGTTTTTACCAACCGGGCTGCCTCTAGCTCAACTTTGTGTAGACGAAGTTGGATTATCACATTCTGAAGCTCATCTTGCTACTGCTGTACCAAAAACAGCTGCTGTTCCTGAACATATATTGGATGTAAAAGCTGATGCAGTTGTTATTAATCAGCAGATTGATGCTTCAGCTGCTGCGCTTTTACCAACCGGGGTGCCTCCAGCTCAGCTTTGTGTAGACGAAGTTGGTTTATCACATTATGAAGCTCATCTTGGTCCTGCTGTACCGAAAACAGCTGCTGTTCCTGAACATTTTTTGGATGTAAAAGCTGCTGCTGTTGTTATTAATGAGCAGTTTGATGCTACAGCTGCTGTGTTATTATCAACCGGGGTGCCTCCAGTTCAGCTTTGTGTAGATAAAGTTAGAATATCACATTTTGAAGCACATATTGGTCCTGCTGTACCGATAACAGGTGTTGTTCCTGTAAGTTCTACATCAGCCGAGCATGTTTTTAAGGATGCAGATTTTGTTCCGTCCAGTAATGATGCAGCAGAGTCTCTTGATGGAGCAGCGATGTCTGTCAATTCTGATCCTTTTGTTAAGGTTCTTCAGAACTGTACCACTGAGGACGAGCCTTGTTTACATGCAGAGGTGCAGCAAATTTTGCCTCAAATTGATGGTGTAGGCTCCGCTGTTTTGCATAATTGTCAAATGATTCAATCGTCTTCTTGTCCAATCCGGACAGCTTGTTCTTCTGTATCGGGTCCATGGAGCCTTGAATGGTTAA
Protein sequence

>MS.gene069743.t1

MRAMRESGQERRDRLRSYRRSFSPVVRTNWGEREHHRGESVDDWTVVSPRRRKALRQGYGGQDRHREIKWHRDWADYDSGQSRFRDRREDYKDAEVRDLDRKRVVDKVQRSHVHLGEEERRGPVLKVLRRVAICVRKIDSNKQKQIETAAAGCSSQQLSNKQKLIENRAADCSSQQLQSAPSSSELANGSSIKRFVTFYFTNFPAQLSNFYLRKGFEVCGMLEEVVVPSKRNVYGAVYGFVRFSNVKDVDKLLKAVNDVWFGNFRVFAKVARFDRSAVKVVEKKDVVIGMNGDGLGKEEGVTVLDKEELKGNIMGPAMVNVGDVRVPLHLGAVKTNVKVGQQASKNLEGCLHSNQKPLRMYRSIEEDLVWARNGCTASVINGEIISVVQNRIVDAGFEDLAVVSMGADRVFLFSSSNIDVFQVLEGAHDFFAHFFSNIRRWNKEVVSFQRGAWLRLYGIPIHAWNESFFKLCVIDFGRFLRSDSVSLDKSTFDFARVLVATSSLEVVNCVEKLVIDGQTFKIKIVEEWGYNLGEDACLLDTDDGLQSTHSENDVCGGEVEHLGVNADCLVDKIVKELSDANLDVSQEHLFDVKAAAVDINEQIDASAAVLLPTGVPPVELVVDEVGLSHSEAHHAPTVPKTAAVPEHLFDIKAAAVDINEQIDASAAAFLPTGLPLAQLCVDEVGLSHSEAHLATAVPKTAAVPEHILDVKADAVVINQQIDASAAALLPTGVPPAQLCVDEVGLSHYEAHLGPAVPKTAAVPEHFLDVKAAAVVINEQFDATAAVLLSTGVPPVQLCVDKVRISHFEAHIGPAVPITGVVPVSSTSAEHVFKDADFVPSSNDAAESLDGAAMSVNSDPFVKVLQNCTTEDEPCLHAELVLLYRVHGALNG