Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069756.t1 | XP_003607217.2 | 98.1 | 989 | 19 | 0 | 1 | 989 | 1 | 989 | 0.00E+00 | 1936.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069756.t1 | P36428 | 76.8 | 957 | 217 | 3 | 38 | 989 | 47 | 1003 | 0.0e+00 | 1499.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069756.t1 | A0A396IBC8 | 98.1 | 989 | 19 | 0 | 1 | 989 | 1 | 989 | 0.0e+00 | 1936.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68122 | MS.gene069756 | PPI |
| MS.gene063074 | MS.gene069756 | PPI |
| MS.gene069756 | MS.gene014188 | PPI |
| MS.gene069756 | MS.gene68723 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069756.t1 | MTR_4g074640 | 98.316 | 950 | 16 | 0 | 40 | 989 | 1 | 950 | 0.0 | 1931 |
| MS.gene069756.t1 | MTR_4g074670 | 85.961 | 463 | 65 | 0 | 40 | 502 | 1 | 463 | 0.0 | 859 |
| MS.gene069756.t1 | MTR_4g074670 | 81.579 | 190 | 35 | 0 | 799 | 988 | 445 | 634 | 1.60e-79 | 272 |
| MS.gene069756.t1 | MTR_4g074670 | 83.630 | 281 | 46 | 0 | 222 | 502 | 1 | 281 | 1.58e-167 | 498 |
| MS.gene069756.t1 | MTR_4g074670 | 81.579 | 190 | 35 | 0 | 799 | 988 | 263 | 452 | 4.93e-82 | 273 |
| MS.gene069756.t1 | MTR_3g118360 | 34.593 | 847 | 458 | 20 | 55 | 866 | 86 | 871 | 4.52e-134 | 425 |
| MS.gene069756.t1 | MTR_3g118360 | 34.940 | 830 | 444 | 20 | 55 | 849 | 86 | 854 | 1.53e-133 | 424 |
| MS.gene069756.t1 | MTR_3g118360 | 34.940 | 830 | 444 | 20 | 55 | 849 | 86 | 854 | 8.57e-133 | 425 |
| MS.gene069756.t1 | MTR_3g118360 | 32.633 | 619 | 341 | 15 | 264 | 849 | 1 | 576 | 2.70e-72 | 254 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069756.t1 | AT1G50200 | 76.803 | 957 | 217 | 3 | 38 | 989 | 47 | 1003 | 0.0 | 1493 |
| MS.gene069756.t1 | AT1G50200 | 76.166 | 965 | 217 | 4 | 38 | 989 | 47 | 1011 | 0.0 | 1486 |
| MS.gene069756.t1 | AT5G22800 | 35.913 | 827 | 430 | 22 | 55 | 838 | 108 | 877 | 1.83e-138 | 441 |
| MS.gene069756.t1 | AT5G22800 | 33.652 | 942 | 497 | 26 | 55 | 955 | 83 | 937 | 2.15e-138 | 440 |
Find 238 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCATTTATGCCACATATTT+TGG | 0.088781 | 4.3:-32764494 | MS.gene069756:CDS |
| GTTCATAACGTTCAAGTTTA+TGG | 0.109288 | 4.3:-32755715 | MS.gene069756:CDS |
| CCTGGACGCGTTCTTCCTTT+TGG | 0.197824 | 4.3:-32764404 | MS.gene069756:CDS |
| GAAGAACGATAGATCCTTTC+TGG | 0.214827 | 4.3:+32755191 | None:intergenic |
| ACTGGTGCTCGGCCATATTC+TGG | 0.216626 | 4.3:-32760806 | MS.gene069756:CDS |
| CACCAGCTCGAATGCACTTT+TGG | 0.230089 | 4.3:+32765325 | None:intergenic |
| ATATCTCTAGCCTCAGTATC+AGG | 0.242247 | 4.3:+32764446 | None:intergenic |
| ATTTCAAATTTGCTTGGTTC+AGG | 0.247448 | 4.3:-32758062 | MS.gene069756:CDS |
| AACAGCTGTTGGACATGTTC+AGG | 0.275058 | 4.3:-32759665 | MS.gene069756:CDS |
| GGTCCAACTTTCCCAGAATA+TGG | 0.280236 | 4.3:+32760794 | None:intergenic |
| ATGGAACCTCGTCTTTATTC+AGG | 0.291356 | 4.3:-32762291 | MS.gene069756:intron |
| CAACCGGGATGCTGCATCTT+TGG | 0.297241 | 4.3:-32762345 | MS.gene069756:CDS |
| ATCAAGAACTGCTCAAAATA+AGG | 0.306307 | 4.3:-32758287 | MS.gene069756:intron |
| TGAGCAAATTCAAGCTGAAT+TGG | 0.318288 | 4.3:-32755012 | MS.gene069756:CDS |
| CCAGTGTCAACATGCTTTGC+AGG | 0.319269 | 4.3:+32761969 | None:intergenic |
| ATGTATGATTAGGGGCTATA+AGG | 0.328822 | 4.3:+32755357 | None:intergenic |
| CCTCTCGTGTGTTTGAGATA+TGG | 0.330074 | 4.3:+32754648 | None:intergenic |
| AGTTTGCTCAAAGCGGTATT+GGG | 0.331799 | 4.3:+32765366 | None:intergenic |
| TCTTTGAGATGTTAGGTAAC+TGG | 0.336497 | 4.3:-32765251 | MS.gene069756:CDS |
| ATCCTACATGCCTCGAGATA+TGG | 0.336552 | 4.3:-32762310 | MS.gene069756:CDS |
| TGGTGATGTTGGTGTAATTC+TGG | 0.341373 | 4.3:-32757469 | MS.gene069756:CDS |
| GACCAAGATTGCCCTACTTC+AGG | 0.355901 | 4.3:-32753280 | MS.gene069756:intron |
| TTGTCTCACCACAGTTCAAC+AGG | 0.362280 | 4.3:-32762019 | MS.gene069756:intron |
| GGCGGAGGAGACGGCGGAGG+TGG | 0.364467 | 4.3:+32766033 | None:intergenic |
| CTGTCATTTGCCATTGCTGA+TGG | 0.364745 | 4.3:-32760713 | MS.gene069756:CDS |
| AAGAGAAGAATCATGTATAC+TGG | 0.368267 | 4.3:-32765937 | MS.gene069756:CDS |
| TGCTTCTGATGCAATGAAAA+TGG | 0.378251 | 4.3:-32754549 | MS.gene069756:CDS |
| TCGTGCTTCACATTGGTAAT+GGG | 0.382910 | 4.3:-32755687 | MS.gene069756:CDS |
| CACACCTTCTTTGAGATGTT+AGG | 0.392733 | 4.3:-32765258 | MS.gene069756:CDS |
| AGAATGGCTGAGTAATGCTT+TGG | 0.394510 | 4.3:-32752661 | MS.gene069756:CDS |
| GAATGGCTGAGTAATGCTTT+GGG | 0.404215 | 4.3:-32752660 | MS.gene069756:CDS |
| CTCAATGAATCAGCATCAAC+AGG | 0.405528 | 4.3:+32755056 | None:intergenic |
| GAGTTTGCTCAAAGCGGTAT+TGG | 0.410252 | 4.3:+32765365 | None:intergenic |
| CCAACTGACACAACTCTAAC+CGG | 0.410379 | 4.3:+32754832 | None:intergenic |
| TGCATATCTCACGTTAATGT+TGG | 0.411098 | 4.3:-32753011 | MS.gene069756:CDS |
| AACAACAGGAAGTGCACATT+AGG | 0.411109 | 4.3:-32759876 | MS.gene069756:CDS |
| TACCTGAAGTAGGGCAATCT+TGG | 0.411861 | 4.3:+32753278 | None:intergenic |
| CAAGAGGAAGAGGAAAGTTT+CGG | 0.412951 | 4.3:-32759844 | MS.gene069756:CDS |
| TTCGTGCTTCACATTGGTAA+TGG | 0.413069 | 4.3:-32755688 | MS.gene069756:CDS |
| CTCTCGTGTGTTTGAGATAT+GGG | 0.417253 | 4.3:+32754649 | None:intergenic |
| ATGTGTGTGCATGTATGATT+AGG | 0.419119 | 4.3:+32755347 | None:intergenic |
| GCAAAATTTAAAACAGCTGT+TGG | 0.419267 | 4.3:-32759676 | MS.gene069756:CDS |
| CTATGCTGAGCAAGGTGGTC+AGG | 0.422720 | 4.3:-32757433 | MS.gene069756:intron |
| ATAGGTAGCGTTTGAGTTGT+GGG | 0.425984 | 4.3:-32758502 | MS.gene069756:intron |
| TGTATGATTAGGGGCTATAA+GGG | 0.429923 | 4.3:+32755358 | None:intergenic |
| GGTGATGAGAAAGCTGGCCT+TGG | 0.430492 | 4.3:-32764470 | MS.gene069756:CDS |
| TTTGAGTTGTGGGATACATA+TGG | 0.434986 | 4.3:-32758492 | MS.gene069756:CDS |
| ATTTCAGCTTTCTTAGCTGC+AGG | 0.437519 | 4.3:+32753306 | None:intergenic |
| TCAAAGAAGAAGCCATTAGC+TGG | 0.439122 | 4.3:-32765212 | MS.gene069756:CDS |
| GATGAAGCGGCTAAGCTAGA+AGG | 0.439209 | 4.3:-32754503 | MS.gene069756:CDS |
| TTTCGGCAGAACCTTAGTTA+AGG | 0.441839 | 4.3:-32759827 | MS.gene069756:intron |
| GACACAACTCTAACCGGATC+AGG | 0.445491 | 4.3:+32754838 | None:intergenic |
| ATACTGAGGCTAGAGATATA+TGG | 0.447714 | 4.3:-32764442 | MS.gene069756:CDS |
| ATAAAATTGACATGGCATAC+AGG | 0.448571 | 4.3:-32760760 | MS.gene069756:CDS |
| TACTCTCTAGTTCAATTTCA+CGG | 0.450028 | 4.3:+32751732 | None:intergenic |
| ATGTTAGGTAACTGGTCCTT+TGG | 0.450932 | 4.3:-32765243 | MS.gene069756:CDS |
| TAACTCCCATGCCCAGCTAA+TGG | 0.454328 | 4.3:+32765200 | None:intergenic |
| CATCATATAATACCTGAAGT+AGG | 0.455474 | 4.3:+32753268 | None:intergenic |
| GCCGTCTCCTCCGCCATGAC+AGG | 0.455538 | 4.3:-32766025 | MS.gene069756:CDS |
| TCCTGTCATGGCGGAGGAGA+CGG | 0.457461 | 4.3:+32766024 | None:intergenic |
| TTCACCTGTGTGAGGTCCAA+TGG | 0.463460 | 4.3:+32758465 | None:intergenic |
| AGAAGGAAGTTTGCTGGAAG+AGG | 0.463523 | 4.3:-32754486 | MS.gene069756:intron |
| GAGGAGAGTAGGGTCATTGA+AGG | 0.463658 | 4.3:+32765895 | None:intergenic |
| GTCAACATGCTTTGCAGGCA+GGG | 0.466153 | 4.3:+32761974 | None:intergenic |
| GAATGTGATTCAAGAGGAAG+AGG | 0.466985 | 4.3:-32759854 | MS.gene069756:CDS |
| CTGGTGCTCGGCCATATTCT+GGG | 0.468254 | 4.3:-32760805 | MS.gene069756:CDS |
| ATGATAATTTCAAATTTGCT+TGG | 0.470436 | 4.3:-32758068 | MS.gene069756:CDS |
| GTGCCGGAGAAAGGAGATAA+AGG | 0.472153 | 4.3:-32752699 | MS.gene069756:CDS |
| GGAAAAGGAGGTCTTGCAAC+GGG | 0.472528 | 4.3:-32752612 | MS.gene069756:CDS |
| TTTCAAATTTGCTTGGTTCA+GGG | 0.472762 | 4.3:-32758061 | MS.gene069756:intron |
| GGGAGATGTGGTAAAGGAAA+AGG | 0.476017 | 4.3:-32752627 | MS.gene069756:CDS |
| AGGAGACGGCGGAGGTGGAG+AGG | 0.476102 | 4.3:+32766038 | None:intergenic |
| TGCCGATGCCAAGCGTATCA+AGG | 0.478205 | 4.3:-32754964 | MS.gene069756:CDS |
| CGGCCATATTCTGGGAAAGT+TGG | 0.482423 | 4.3:-32760797 | MS.gene069756:CDS |
| TTTCCCCGAGCTAAAACAAC+AGG | 0.483670 | 4.3:-32759890 | MS.gene069756:CDS |
| GCATATCTCACGTTAATGTT+GGG | 0.483698 | 4.3:-32753010 | MS.gene069756:CDS |
| AATTTGAAATTATCATCTGT+TGG | 0.486165 | 4.3:+32758075 | None:intergenic |
| AATGTAGGTCTATCCTGATC+CGG | 0.487244 | 4.3:-32754851 | MS.gene069756:intron |
| ATGCTTTGGGGCCACTGAAA+GGG | 0.487479 | 4.3:-32752647 | MS.gene069756:CDS |
| AAATGTTGTGGCAAATGTGC+TGG | 0.487583 | 4.3:-32759920 | MS.gene069756:CDS |
| TGTCAACATGCTTTGCAGGC+AGG | 0.488357 | 4.3:+32761973 | None:intergenic |
| TAAGCTAGAAGGAAGTTTGC+TGG | 0.488518 | 4.3:-32754492 | MS.gene069756:CDS |
| TGTGTGTGCATGTATGATTA+GGG | 0.489098 | 4.3:+32755348 | None:intergenic |
| TATAGGTAGCGTTTGAGTTG+TGG | 0.493113 | 4.3:-32758503 | MS.gene069756:intron |
| TGTAGTGTGTGCTGGGGTGC+CGG | 0.494475 | 4.3:-32752715 | MS.gene069756:CDS |
| TTACCTTTATCTCCTTTCTC+CGG | 0.495540 | 4.3:+32752696 | None:intergenic |
| AAACATACTTTACATCCAAA+AGG | 0.496267 | 4.3:+32764389 | None:intergenic |
| CAACTTCCTCTGCAGTATAG+AGG | 0.498143 | 4.3:+32761926 | None:intergenic |
| TGTCATTTGCCATTGCTGAT+GGG | 0.498811 | 4.3:-32760712 | MS.gene069756:CDS |
| GCTGAGGAGGGAATTGCTAA+AGG | 0.500043 | 4.3:-32754605 | MS.gene069756:CDS |
| ATTGCTGATGGGTCTCGTCC+TGG | 0.500105 | 4.3:-32760701 | MS.gene069756:intron |
| AGCTGAATAGCATCGAAGAT+AGG | 0.503102 | 4.3:+32761876 | None:intergenic |
| TGACGAATGCAGGAAGTACT+TGG | 0.505300 | 4.3:-32755226 | MS.gene069756:intron |
| TGTAACACATAACAGGCAAC+TGG | 0.505452 | 4.3:-32760824 | MS.gene069756:intron |
| CATGGCGGAGGAGACGGCGG+AGG | 0.507042 | 4.3:+32766030 | None:intergenic |
| GTATACTCCGTCGAGCTGTT+CGG | 0.508490 | 4.3:-32760253 | MS.gene069756:CDS |
| GCGTTGGCGAAGAGGAGAGT+AGG | 0.508909 | 4.3:+32765884 | None:intergenic |
| GGGTTGTTGCAGATCACATC+AGG | 0.509762 | 4.3:-32760739 | MS.gene069756:CDS |
| GTCGAGCTGTTCGGTATGGT+CGG | 0.509843 | 4.3:-32760244 | MS.gene069756:CDS |
| TCACCTGTGTGAGGTCCAAT+GGG | 0.511378 | 4.3:+32758466 | None:intergenic |
| GTATGGTCGGGAAGTGCTAA+AGG | 0.513822 | 4.3:-32760231 | MS.gene069756:CDS |
| TGTGCTGGGGTGCCGGAGAA+AGG | 0.514670 | 4.3:-32752708 | MS.gene069756:CDS |
| TGTTACTATCAGCAAGCTGG+TGG | 0.517907 | 4.3:-32758153 | MS.gene069756:intron |
| GAGAGAGAAGCTACCGGCGT+TGG | 0.518104 | 4.3:+32765868 | None:intergenic |
| AACAAAGCTGTAGTGTGTGC+TGG | 0.518252 | 4.3:-32752723 | MS.gene069756:CDS |
| GGGTCATTGAAGGGGACGAC+GGG | 0.518747 | 4.3:+32765905 | None:intergenic |
| GTGGTAAAAGCAATATATAC+TGG | 0.521169 | 4.3:-32757522 | MS.gene069756:CDS |
| AGGAGGTCTTGCAACGGGAC+AGG | 0.521507 | 4.3:-32752607 | MS.gene069756:intron |
| ACAGCTGTTGGACATGTTCA+GGG | 0.521612 | 4.3:-32759664 | MS.gene069756:CDS |
| CTCCGTCGAGCTGTTCGGTA+TGG | 0.522500 | 4.3:-32760248 | MS.gene069756:CDS |
| GTCTATCCTGACCTTAACTA+AGG | 0.523455 | 4.3:+32759816 | None:intergenic |
| GTATCTCTGACGCGCTTCGC+CGG | 0.526015 | 4.3:+32765977 | None:intergenic |
| GAAAGGAGATAAAGGTAAGC+TGG | 0.527245 | 4.3:-32752691 | MS.gene069756:CDS |
| ACCCTTGATACGCTTGGCAT+CGG | 0.527787 | 4.3:+32754962 | None:intergenic |
| CCGGTTAGAGTTGTGTCAGT+TGG | 0.528364 | 4.3:-32754832 | MS.gene069756:CDS |
| TACAAAAGTCATTGATCAGA+AGG | 0.530377 | 4.3:-32752958 | MS.gene069756:intron |
| TTCTTTGAAGTAATCGCCAA+AGG | 0.530535 | 4.3:+32765227 | None:intergenic |
| AATGCTTTGGGGCCACTGAA+AGG | 0.530573 | 4.3:-32752648 | MS.gene069756:CDS |
| AAGAAGCCATTAGCTGGGCA+TGG | 0.530759 | 4.3:-32765206 | MS.gene069756:CDS |
| ATCATATAATACCTGAAGTA+GGG | 0.532869 | 4.3:+32753269 | None:intergenic |
| CCTGCAAAGCATGTTGACAC+TGG | 0.534391 | 4.3:-32761969 | MS.gene069756:CDS |
| TCGAGCTGTTCGGTATGGTC+GGG | 0.534669 | 4.3:-32760243 | MS.gene069756:CDS |
| CCAAAAGGAAGAACGCGTCC+AGG | 0.534992 | 4.3:+32764404 | None:intergenic |
| GCTGATCTAGCTGTTTCAGA+TGG | 0.536347 | 4.3:-32753044 | MS.gene069756:CDS |
| GTTAATACTGATGGTGATGT+TGG | 0.542418 | 4.3:-32757480 | MS.gene069756:CDS |
| TATCTTCGATGCTATTCAGC+TGG | 0.542663 | 4.3:-32761874 | MS.gene069756:intron |
| GAACTTGAAATGAAGCATGT+TGG | 0.543494 | 4.3:+32755734 | None:intergenic |
| GTTGATTCAGTTAATACTGA+TGG | 0.545376 | 4.3:-32757489 | MS.gene069756:CDS |
| AGGAGAGTAGGGTCATTGAA+GGG | 0.545848 | 4.3:+32765896 | None:intergenic |
| AGCTACCGGCGTTGGCGAAG+AGG | 0.546190 | 4.3:+32765876 | None:intergenic |
| AAGCATGTTGACACTGGAAT+GGG | 0.546666 | 4.3:-32761963 | MS.gene069756:CDS |
| AGAGGGTTGTGAATGACAAG+AGG | 0.548129 | 4.3:-32766139 | None:intergenic |
| ACAAAGCTGTAGTGTGTGCT+GGG | 0.548423 | 4.3:-32752722 | MS.gene069756:CDS |
| TCGCAGACCCTTGATACGCT+TGG | 0.548676 | 4.3:+32754956 | None:intergenic |
| ACCCAAAAGTGCATTCGAGC+TGG | 0.549128 | 4.3:-32765327 | MS.gene069756:CDS |
| TTACCACATCTCCCTTTCAG+TGG | 0.549551 | 4.3:+32752636 | None:intergenic |
| CTCATCACCACCAAAATATG+TGG | 0.551078 | 4.3:+32764484 | None:intergenic |
| TCAAAATGAATTTCTGTGCA+AGG | 0.551129 | 4.3:+32762377 | None:intergenic |
| CTTCACATTGGTAATGGGAC+TGG | 0.552145 | 4.3:-32755682 | MS.gene069756:CDS |
| CTGATCTAGCTGTTTCAGAT+GGG | 0.557727 | 4.3:-32753043 | MS.gene069756:CDS |
| CTGAAAGGGAGATGTGGTAA+AGG | 0.558294 | 4.3:-32752633 | MS.gene069756:CDS |
| GTTACCTAACATCTCAAAGA+AGG | 0.560082 | 4.3:+32765254 | None:intergenic |
| GGATACATATGGCTTCCCAT+TGG | 0.561612 | 4.3:-32758481 | MS.gene069756:CDS |
| TTCAGGGAAACATACTGAGT+GGG | 0.561646 | 4.3:-32759648 | MS.gene069756:CDS |
| AATGGGACTGGTATCTCTGT+TGG | 0.562252 | 4.3:-32755670 | MS.gene069756:CDS |
| GTGGCATAAATGCGATCTGA+AGG | 0.564396 | 4.3:+32764503 | None:intergenic |
| ATGGGTGACACTGGTCCTTG+TGG | 0.566112 | 4.3:-32762401 | MS.gene069756:CDS |
| TGGCCTTGGCCCTGATACTG+AGG | 0.566728 | 4.3:-32764456 | MS.gene069756:CDS |
| TGTAACGTTAACAGCTGAGA+AGG | 0.569754 | 4.3:-32753066 | MS.gene069756:CDS |
| GCCGATGCCAAGCGTATCAA+GGG | 0.570608 | 4.3:-32754963 | MS.gene069756:CDS |
| ACTCTCCTCTTCGCCAACGC+CGG | 0.576230 | 4.3:-32765881 | MS.gene069756:intron |
| CATAACAGGCAACTGGTGCT+CGG | 0.576350 | 4.3:-32760817 | MS.gene069756:intron |
| TAAAATTGACATGGCATACA+GGG | 0.577632 | 4.3:-32760759 | MS.gene069756:CDS |
| AAATTACATGTCGATGTCGA+AGG | 0.578758 | 4.3:-32758343 | MS.gene069756:CDS |
| GGAAGTGCTAAAGGCTGAAG+AGG | 0.579775 | 4.3:-32760222 | MS.gene069756:CDS |
| ATCAGTTCCTGTCATGGCGG+AGG | 0.579820 | 4.3:+32766018 | None:intergenic |
| TCTATTTCATCTGAATTGTG+TGG | 0.581871 | 4.3:-32754760 | MS.gene069756:CDS |
| AGAAGCCATTAGCTGGGCAT+GGG | 0.582659 | 4.3:-32765205 | MS.gene069756:CDS |
| TAGCCTCAGTATCAGGGCCA+AGG | 0.583006 | 4.3:+32764453 | None:intergenic |
| CTCACACGTAAATGAGGCTA+TGG | 0.583114 | 4.3:-32751776 | MS.gene069756:CDS |
| AGATGCCTCACACGTAAATG+AGG | 0.584387 | 4.3:-32751782 | MS.gene069756:CDS |
| TGAATTGGATGTAAATGCAA+AGG | 0.585842 | 4.3:-32754997 | MS.gene069756:CDS |
| TACACTCGATATCGAGTGGC+CGG | 0.585939 | 4.3:-32765996 | MS.gene069756:CDS |
| ACATCTCAAAGAAGGTGTGA+TGG | 0.587964 | 4.3:+32765262 | None:intergenic |
| GAGTGTATCAGTTCCTGTCA+TGG | 0.589194 | 4.3:+32766012 | None:intergenic |
| AGCTGGTGGTGCTATTGTCA+TGG | 0.590439 | 4.3:-32758139 | MS.gene069756:CDS |
| CATAACGTTCAAGTTTATGG+AGG | 0.590521 | 4.3:-32755712 | MS.gene069756:CDS |
| TATCTCTAGCCTCAGTATCA+GGG | 0.592945 | 4.3:+32764447 | None:intergenic |
| TTGTGACAGCTGTTATTCTG+CGG | 0.594446 | 4.3:+32754579 | None:intergenic |
| AGATGTGGTAAAGGAAAAGG+AGG | 0.595385 | 4.3:-32752624 | MS.gene069756:CDS |
| GGCAATCATGTAGACCAGAA+AGG | 0.595519 | 4.3:-32755205 | MS.gene069756:CDS |
| AAAGCATGTTGACACTGGAA+TGG | 0.597758 | 4.3:-32761964 | MS.gene069756:CDS |
| GAGATACCGTGAGAGGGTGG+CGG | 0.599144 | 4.3:+32766070 | None:intergenic |
| CGATGTTGCAGCAGTTCGTG+AGG | 0.602573 | 4.3:-32752985 | MS.gene069756:CDS |
| TTCATCTTTGAAAAGCAATG+TGG | 0.602709 | 4.3:-32753343 | MS.gene069756:CDS |
| TAACCAAAGATGCAGCATCC+CGG | 0.603690 | 4.3:+32762342 | None:intergenic |
| AATGGCTGAGTAATGCTTTG+GGG | 0.604194 | 4.3:-32752659 | MS.gene069756:CDS |
| CAAAGAAGAAGCCATTAGCT+GGG | 0.605025 | 4.3:-32765211 | MS.gene069756:CDS |
| CAAAAGTGCATTCGAGCTGG+TGG | 0.606727 | 4.3:-32765324 | MS.gene069756:CDS |
| TTTCGTTATCAGGGTCAGCA+AGG | 0.608732 | 4.3:+32754791 | None:intergenic |
| GGAGAGTAGGGTCATTGAAG+GGG | 0.610058 | 4.3:+32765897 | None:intergenic |
| AGGGTCATTGAAGGGGACGA+CGG | 0.610203 | 4.3:+32765904 | None:intergenic |
| CGTTGGCGAAGAGGAGAGTA+GGG | 0.610687 | 4.3:+32765885 | None:intergenic |
| CTGTTGATGCTGATTCATTG+AGG | 0.612106 | 4.3:-32755055 | MS.gene069756:CDS |
| CACAATGATCTTGACGACGT+GGG | 0.612293 | 4.3:-32765297 | MS.gene069756:CDS |
| TGAGAAGCAAGTAGATGAAG+CGG | 0.615185 | 4.3:-32754516 | MS.gene069756:CDS |
| TAAACAGGGATTGTCAGTGA+TGG | 0.616674 | 4.3:-32752769 | MS.gene069756:intron |
| TTAGCGCCGCCACCCTCTCA+CGG | 0.618261 | 4.3:-32766076 | MS.gene069756:CDS |
| GGAGGTTTCGTGCTTCACAT+TGG | 0.619470 | 4.3:-32755694 | MS.gene069756:CDS |
| TTTGGTGGTGATGAGAAAGC+TGG | 0.620486 | 4.3:-32764476 | MS.gene069756:CDS |
| AATGTTGTGGCAAATGTGCT+GGG | 0.621430 | 4.3:-32759919 | MS.gene069756:CDS |
| ACAAGCTTCTATGCTGAGCA+AGG | 0.625524 | 4.3:-32757441 | MS.gene069756:CDS |
| ATTTCTGTGCAAGGTCCACA+AGG | 0.625777 | 4.3:+32762386 | None:intergenic |
| AGGACGAGACCCATCAGCAA+TGG | 0.627510 | 4.3:+32760703 | None:intergenic |
| CATAGCCTCATTTACGTGTG+AGG | 0.628945 | 4.3:+32751777 | None:intergenic |
| GTCTTAGGACCATGAGAGTG+TGG | 0.631834 | 4.3:-32757541 | MS.gene069756:intron |
| ATTGGATGTAAATGCAAAGG+AGG | 0.632135 | 4.3:-32754994 | MS.gene069756:CDS |
| ACAATGATCTTGACGACGTG+GGG | 0.633719 | 4.3:-32765296 | MS.gene069756:CDS |
| GACCATACCGAACAGCTCGA+CGG | 0.633901 | 4.3:+32760246 | None:intergenic |
| TTCCATATCTCGAGGCATGT+AGG | 0.636693 | 4.3:+32762308 | None:intergenic |
| GTTTGCTCAAAGCGGTATTG+GGG | 0.637479 | 4.3:+32765367 | None:intergenic |
| TGTCATGGCGGAGGAGACGG+CGG | 0.638181 | 4.3:+32766027 | None:intergenic |
| CTCGAGATACCGTGAGAGGG+TGG | 0.639179 | 4.3:+32766067 | None:intergenic |
| CATTAGGAATGTGATTCAAG+AGG | 0.642500 | 4.3:-32759860 | MS.gene069756:CDS |
| CTTCCCATTGGACCTCACAC+AGG | 0.645170 | 4.3:-32758469 | MS.gene069756:intron |
| GTAAGCTGGATGTATCAGAA+TGG | 0.647412 | 4.3:-32752677 | MS.gene069756:CDS |
| ATGTTGGAAATCAAGAGACC+CGG | 0.647630 | 4.3:+32755750 | None:intergenic |
| TGGCGACAAAGTAGTATGCA+AGG | 0.651339 | 4.3:-32755650 | MS.gene069756:intron |
| GAAGTGCTAAAGGCTGAAGA+GGG | 0.651588 | 4.3:-32760221 | MS.gene069756:CDS |
| AGATCTCGAGATACCGTGAG+AGG | 0.654707 | 4.3:+32766063 | None:intergenic |
| GGGCCACTGAAAGGGAGATG+TGG | 0.655092 | 4.3:-32752639 | MS.gene069756:CDS |
| GACTGACCTCTATACTGCAG+AGG | 0.655134 | 4.3:-32761932 | MS.gene069756:CDS |
| GCACAATGATCTTGACGACG+TGG | 0.658642 | 4.3:-32765298 | MS.gene069756:CDS |
| ATTTCATCTGAATTGTGTGG+TGG | 0.658972 | 4.3:-32754757 | MS.gene069756:intron |
| CTCTTCGAAGAACTTGACGA+AGG | 0.661427 | 4.3:+32765955 | None:intergenic |
| CAGTTCAACAGGGAGGCTGA+CGG | 0.664736 | 4.3:-32762008 | MS.gene069756:CDS |
| GATCTCGAGATACCGTGAGA+GGG | 0.664985 | 4.3:+32766064 | None:intergenic |
| AATCAGGCTTGTAAATGTTG+TGG | 0.668615 | 4.3:-32759932 | MS.gene069756:intron |
| AGACGAGGTTCCATATCTCG+AGG | 0.669081 | 4.3:+32762300 | None:intergenic |
| AGGAAAAGGAGGTCTTGCAA+CGG | 0.669184 | 4.3:-32752613 | MS.gene069756:CDS |
| TGTCTCACCACAGTTCAACA+GGG | 0.670149 | 4.3:-32762018 | MS.gene069756:intron |
| GCGGCGCTAATAGAGTGTTA+CGG | 0.670388 | 4.3:+32766089 | None:intergenic |
| AGATGCTGATAAAATTGACA+TGG | 0.670809 | 4.3:-32760768 | MS.gene069756:CDS |
| AAAGGAAGAACGCGTCCAGG+AGG | 0.675704 | 4.3:+32764407 | None:intergenic |
| TCAGGGAAACATACTGAGTG+GGG | 0.678837 | 4.3:-32759647 | MS.gene069756:CDS |
| GGGAAACATACTGAGTGGGG+AGG | 0.679009 | 4.3:-32759644 | MS.gene069756:intron |
| CTGATACACTCGATATCGAG+TGG | 0.683989 | 4.3:-32766000 | MS.gene069756:CDS |
| AGAACAACTTCACCTGTGTG+AGG | 0.685827 | 4.3:+32758457 | None:intergenic |
| GTTCAGGGAAACATACTGAG+TGG | 0.687325 | 4.3:-32759649 | MS.gene069756:CDS |
| CCATATCTCAAACACACGAG+AGG | 0.696552 | 4.3:-32754648 | MS.gene069756:CDS |
| ACGGGAGAGTTTGCTCAAAG+CGG | 0.698724 | 4.3:+32765359 | None:intergenic |
| AGCTTCTATGCTGAGCAAGG+TGG | 0.702055 | 4.3:-32757438 | MS.gene069756:CDS |
| GTGTGTGCATGTATGATTAG+GGG | 0.702667 | 4.3:+32755349 | None:intergenic |
| AAGGTCGTGAGTATGTTCTG+AGG | 0.708774 | 4.3:-32760277 | MS.gene069756:CDS |
| TGTATCAGTTCCTGTCATGG+CGG | 0.715205 | 4.3:+32766015 | None:intergenic |
| CAAAGCTGTAGTGTGTGCTG+GGG | 0.725318 | 4.3:-32752721 | MS.gene069756:CDS |
| AAAATACCTGAATAAAGACG+AGG | 0.734207 | 4.3:+32762285 | None:intergenic |
| CTCACCACAGTTCAACAGGG+AGG | 0.740280 | 4.3:-32762015 | MS.gene069756:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 32751738 | 32766149 | 32751738 | ID=MS.gene069756 |
| chr4.3 | mRNA | 32751738 | 32766149 | 32751738 | ID=MS.gene069756.t1;Parent=MS.gene069756 |
| chr4.3 | exon | 32765882 | 32766149 | 32765882 | ID=MS.gene069756.t1.exon1;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32765882 | 32766149 | 32765882 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32765191 | 32765429 | 32765191 | ID=MS.gene069756.t1.exon2;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32765191 | 32765429 | 32765191 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32764397 | 32764537 | 32764397 | ID=MS.gene069756.t1.exon3;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32764397 | 32764537 | 32764397 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32762292 | 32762438 | 32762292 | ID=MS.gene069756.t1.exon4;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32762292 | 32762438 | 32762292 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32761875 | 32762027 | 32761875 | ID=MS.gene069756.t1.exon5;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32761875 | 32762027 | 32761875 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32760702 | 32760831 | 32760702 | ID=MS.gene069756.t1.exon6;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32760702 | 32760831 | 32760702 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32760209 | 32760305 | 32760209 | ID=MS.gene069756.t1.exon7;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32760209 | 32760305 | 32760209 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32759828 | 32759948 | 32759828 | ID=MS.gene069756.t1.exon8;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32759828 | 32759948 | 32759828 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32759645 | 32759704 | 32759645 | ID=MS.gene069756.t1.exon9;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32759645 | 32759704 | 32759645 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32758470 | 32758520 | 32758470 | ID=MS.gene069756.t1.exon10;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32758470 | 32758520 | 32758470 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32758288 | 32758383 | 32758288 | ID=MS.gene069756.t1.exon11;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32758288 | 32758383 | 32758288 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32758062 | 32758163 | 32758062 | ID=MS.gene069756.t1.exon12;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32758062 | 32758163 | 32758062 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32757434 | 32757556 | 32757434 | ID=MS.gene069756.t1.exon13;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32757434 | 32757556 | 32757434 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32755651 | 32755782 | 32755651 | ID=MS.gene069756.t1.exon14;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32755651 | 32755782 | 32755651 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32755328 | 32755399 | 32755328 | ID=MS.gene069756.t1.exon15;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32755328 | 32755399 | 32755328 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32755161 | 32755236 | 32755161 | ID=MS.gene069756.t1.exon16;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32755161 | 32755236 | 32755161 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32754941 | 32755083 | 32754941 | ID=MS.gene069756.t1.exon17;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32754941 | 32755083 | 32754941 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32754758 | 32754866 | 32754758 | ID=MS.gene069756.t1.exon18;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32754758 | 32754866 | 32754758 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32754487 | 32754674 | 32754487 | ID=MS.gene069756.t1.exon19;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32754487 | 32754674 | 32754487 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32753281 | 32753370 | 32753281 | ID=MS.gene069756.t1.exon20;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32753281 | 32753370 | 32753281 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32752959 | 32753141 | 32752959 | ID=MS.gene069756.t1.exon21;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32752959 | 32753141 | 32752959 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32752608 | 32752784 | 32752608 | ID=MS.gene069756.t1.exon22;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32752608 | 32752784 | 32752608 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| chr4.3 | exon | 32751738 | 32751809 | 32751738 | ID=MS.gene069756.t1.exon23;Parent=MS.gene069756.t1 |
| chr4.3 | CDS | 32751738 | 32751809 | 32751738 | ID=cds.MS.gene069756.t1;Parent=MS.gene069756.t1 |
| Gene Sequence |
| Protein sequence |
