Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069973.t1 | XP_003603879.2 | 97.5 | 81 | 1 | 1 | 1 | 81 | 1 | 80 | 2.30E-35 | 159.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069973.t1 | G7J6H1 | 97.5 | 81 | 1 | 1 | 1 | 81 | 1 | 80 | 1.6e-35 | 159.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051452 | MS.gene069973 | 0.821097 | 4.84E-53 | -1.69E-46 |
| MS.gene056631 | MS.gene069973 | 0.801165 | 1.02E-48 | -1.69E-46 |
| MS.gene057140 | MS.gene069973 | 0.810581 | 1.07E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene069973 | 0.807787 | 4.26E-50 | -1.69E-46 |
| MS.gene059830 | MS.gene069973 | 0.8346 | 2.73E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069973.t1 | MTR_3g116150 | 97.531 | 81 | 1 | 1 | 1 | 81 | 1 | 80 | 1.72e-51 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069973.t1 | AT2G33585 | 67.901 | 81 | 24 | 1 | 1 | 81 | 98 | 176 | 3.50e-35 | 123 |
| MS.gene069973.t1 | AT2G33585 | 74.545 | 55 | 14 | 0 | 1 | 55 | 98 | 152 | 6.31e-26 | 98.6 |
Find 60 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTTGTGAGCTTTCTATT+TGG | 0.247959 | 3.2:+91788404 | MS.gene069973:CDS |
| GAACCCTAGCTTATTATCTT+TGG | 0.258975 | 3.2:+91786118 | MS.gene069973:CDS |
| GAGGAAGCAACCTCGCTTCT+TGG | 0.300549 | 3.2:+91786085 | MS.gene069973:CDS |
| CTTTCTATTTGGCTCGTATA+AGG | 0.304275 | 3.2:+91788415 | MS.gene069973:CDS |
| ACTCTTCAATGGCGAGTAAC+TGG | 0.320203 | 3.2:+91786004 | None:intergenic |
| ACCGTGACGTCTCTGGTATA+TGG | 0.376623 | 3.2:+91787699 | MS.gene069973:CDS |
| AGGAAGCAACCTCGCTTCTT+GGG | 0.395335 | 3.2:+91786086 | MS.gene069973:CDS |
| ATTCCATGGGGCTATATGAT+AGG | 0.414077 | 3.2:+91787333 | MS.gene069973:CDS |
| TTCTGTGGTCTGAGAGTGGC+TGG | 0.448913 | 3.2:-91788447 | None:intergenic |
| TGTTTGCAAGGGAGAGAGAG+TGG | 0.452389 | 3.2:+91787597 | MS.gene069973:CDS |
| GAGGAACGAACTTGAGGATC+AGG | 0.455383 | 3.2:-91786243 | None:intergenic |
| GTTTGCAAGGGAGAGAGAGT+GGG | 0.462846 | 3.2:+91787598 | MS.gene069973:CDS |
| CCGTGACGTCTCTGGTATAT+GGG | 0.468105 | 3.2:+91787700 | MS.gene069973:CDS |
| GGTATATGGGAGTGGGCTGT+AGG | 0.468726 | 3.2:+91787713 | MS.gene069973:CDS |
| CTCTCCCTTGCAAACATCCA+TGG | 0.469648 | 3.2:-91787590 | None:intergenic |
| CGAACTTGAGGATCAGGAAC+AGG | 0.471583 | 3.2:-91786237 | None:intergenic |
| CGAGTTTCAACATAGCGAAA+AGG | 0.472893 | 3.2:-91786210 | None:intergenic |
| ACGTCTCTGGTATATGGGAG+TGG | 0.474946 | 3.2:+91787705 | MS.gene069973:CDS |
| CTCGCTTCTTGGGTTGTCGC+CGG | 0.477421 | 3.2:+91786096 | MS.gene069973:CDS |
| TGATCCAAAGATAATAAGCT+AGG | 0.483025 | 3.2:-91786122 | None:intergenic |
| TGAATTGCAGCACGATTCCA+TGG | 0.483385 | 3.2:+91787319 | MS.gene069973:intron |
| TTGCGTGACCGTGACGTCTC+TGG | 0.488663 | 3.2:+91787692 | MS.gene069973:CDS |
| TTTGCAAGGGAGAGAGAGTG+GGG | 0.493744 | 3.2:+91787599 | MS.gene069973:CDS |
| AAGATAATAAGCTAGGGTTC+CGG | 0.497881 | 3.2:-91786115 | None:intergenic |
| AGATCAAAGAAGTGGTTCCA+TGG | 0.503707 | 3.2:+91787573 | MS.gene069973:intron |
| AGAAAGCTCACAAGTGAAGA+AGG | 0.514582 | 3.2:-91788398 | None:intergenic |
| ATATGATGTGTGTCGAAAGC+AGG | 0.517260 | 3.2:+91788469 | MS.gene069973:CDS |
| CTGACAAGGAAATCAGCATC+AGG | 0.521138 | 3.2:-91788494 | None:intergenic |
| TCGCGTTTGAGATCTTGATC+AGG | 0.521692 | 3.2:-91786147 | None:intergenic |
| ATGGGAGTGGGCTGTAGGAG+TGG | 0.536518 | 3.2:+91787718 | MS.gene069973:CDS |
| TGGTTCCATGGATGTTTGCA+AGG | 0.538101 | 3.2:+91787585 | MS.gene069973:CDS |
| GTCGTTCGTGAACAATTCGA+TGG | 0.543665 | 3.2:+91786050 | MS.gene069973:CDS |
| GAATTGCAGCACGATTCCAT+GGG | 0.549021 | 3.2:+91787320 | MS.gene069973:intron |
| CGTCTCTGGTATATGGGAGT+GGG | 0.549081 | 3.2:+91787706 | MS.gene069973:CDS |
| CCCTCACTCATTCTCACTTG+CGG | 0.560729 | 3.2:-91787665 | None:intergenic |
| TTTAAAGTGAAAGGGGTAGA+GGG | 0.561358 | 3.2:+91787632 | MS.gene069973:CDS |
| AAAGGGGTAGAGGGAAAAGT+TGG | 0.567124 | 3.2:+91787641 | MS.gene069973:CDS |
| CATGGGGCTATATGATAGGA+TGG | 0.567997 | 3.2:+91787337 | MS.gene069973:CDS |
| GATCCAAAGATAATAAGCTA+GGG | 0.581242 | 3.2:-91786121 | None:intergenic |
| TTCGTGAACAATTCGATGGG+TGG | 0.584430 | 3.2:+91786054 | MS.gene069973:CDS |
| CCCATATACCAGAGACGTCA+CGG | 0.587462 | 3.2:-91787700 | None:intergenic |
| TATTCAAAAGATCAAAGAAG+TGG | 0.589305 | 3.2:+91787565 | MS.gene069973:intron |
| GAAGAACACTCGGCAACGCA+AGG | 0.595860 | 3.2:+91786028 | MS.gene069973:CDS |
| AAACTTTGCAAAGAGGATTG+TGG | 0.603028 | 3.2:-91788345 | None:intergenic |
| TCGACACACATCATATTCTG+TGG | 0.604541 | 3.2:-91788462 | None:intergenic |
| TCGTTCGTGAACAATTCGAT+GGG | 0.609126 | 3.2:+91786051 | MS.gene069973:CDS |
| AAGAGTTTGGTCATCTGACA+AGG | 0.609871 | 3.2:-91788508 | None:intergenic |
| CATATTCTGTGGTCTGAGAG+TGG | 0.612463 | 3.2:-91788451 | None:intergenic |
| AATTCGATGGGTGGTCTGAG+AGG | 0.619195 | 3.2:+91786063 | MS.gene069973:CDS |
| TCGATGGGTGGTCTGAGAGG+AGG | 0.620565 | 3.2:+91786066 | MS.gene069973:CDS |
| GGTTCCATGGATGTTTGCAA+GGG | 0.622578 | 3.2:+91787586 | MS.gene069973:CDS |
| CCGCAAGTGAGAATGAGTGA+GGG | 0.623511 | 3.2:+91787665 | MS.gene069973:CDS |
| CATCCTATCATATAGCCCCA+TGG | 0.639997 | 3.2:-91787336 | None:intergenic |
| CGCAAGTGAGAATGAGTGAG+GGG | 0.641444 | 3.2:+91787666 | MS.gene069973:CDS |
| TTGCAAAGAGGATTGTGGCA+CGG | 0.642847 | 3.2:-91788340 | None:intergenic |
| TCCGCAAGTGAGAATGAGTG+AGG | 0.648199 | 3.2:+91787664 | MS.gene069973:CDS |
| CGGCGACAACCCAAGAAGCG+AGG | 0.662090 | 3.2:-91786095 | None:intergenic |
| ATAGCGAAAAGGATCATCAG+AGG | 0.666816 | 3.2:-91786199 | None:intergenic |
| AGTAACTGGAGAAGAACACT+CGG | 0.697006 | 3.2:+91786018 | MS.gene069973:CDS |
| AATTGCAGCACGATTCCATG+GGG | 0.704355 | 3.2:+91787321 | MS.gene069973:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAAATATATTTTAATA+TGG | - | chr3.2:91787447-91787466 | None:intergenic | 0.0% |
| !! | AAATTACTTTATATATTGTA+CGG | + | chr3.2:91786629-91786648 | MS.gene069973:intron | 10.0% |
| !! | ATAAGTCAAATATTAAATAA+TGG | + | chr3.2:91787041-91787060 | MS.gene069973:intron | 10.0% |
| !!! | ACATATTTTCAATAAATTAA+TGG | - | chr3.2:91787530-91787549 | None:intergenic | 10.0% |
| !!! | ATATCTTACATTTTAAAAAT+AGG | - | chr3.2:91786702-91786721 | None:intergenic | 10.0% |
| !!! | CATATTTTCAATAAATTAAT+GGG | - | chr3.2:91787529-91787548 | None:intergenic | 10.0% |
| !!! | TAATTTTCAATTTTAATTTC+AGG | + | chr3.2:91786321-91786340 | MS.gene069973:intron | 10.0% |
| !! | TAATAATAGAGAAAAAGAAA+AGG | - | chr3.2:91786292-91786311 | None:intergenic | 15.0% |
| !!! | GTTTAAAAAAATAGTGTTTT+CGG | + | chr3.2:91787914-91787933 | MS.gene069973:intron | 15.0% |
| !! | ATATTCATTGCATGTTTAAA+AGG | - | chr3.2:91788225-91788244 | None:intergenic | 20.0% |
| !! | ATTAGGGAAAAATATATTCA+TGG | - | chr3.2:91787484-91787503 | None:intergenic | 20.0% |
| !! | TTAGGGAAAAATATATTCAT+GGG | - | chr3.2:91787483-91787502 | None:intergenic | 20.0% |
| !!! | AAGTTGATTTTAAAGTGAAA+GGG | + | chr3.2:91787624-91787643 | MS.gene069973:CDS | 20.0% |
| ! | AAAAGAAAAGGAAGTAAAAG+TGG | - | chr3.2:91786280-91786299 | None:intergenic | 25.0% |
| ! | AAAATAGTGAAATTTGATCG+GGG | + | chr3.2:91786560-91786579 | MS.gene069973:intron | 25.0% |
| ! | ACAACAAAGACAAATCATTT+AGG | + | chr3.2:91786371-91786390 | MS.gene069973:intron | 25.0% |
| ! | ATAATCACAAGCAATTTAGT+CGG | - | chr3.2:91787390-91787409 | None:intergenic | 25.0% |
| ! | ATACACCAACAATGTAAATT+AGG | - | chr3.2:91786602-91786621 | None:intergenic | 25.0% |
| ! | ATGTAAGATATTATAGACCT+AGG | + | chr3.2:91786711-91786730 | MS.gene069973:intron | 25.0% |
| ! | CAAAATAGTGAAATTTGATC+GGG | + | chr3.2:91786559-91786578 | MS.gene069973:intron | 25.0% |
| ! | CAACAAAGACAAATCATTTA+GGG | + | chr3.2:91786372-91786391 | MS.gene069973:intron | 25.0% |
| ! | CTTTACTAGCTAATATGTAA+AGG | - | chr3.2:91787845-91787864 | None:intergenic | 25.0% |
| ! | CTTTCCTAACTAATATGTAA+AGG | - | chr3.2:91787082-91787101 | None:intergenic | 25.0% |
| ! | GCAAAATAGTGAAATTTGAT+CGG | + | chr3.2:91786558-91786577 | MS.gene069973:intron | 25.0% |
| ! | GTAAACCTAATTTACATTGT+TGG | + | chr3.2:91786594-91786613 | MS.gene069973:intron | 25.0% |
| ! | TATTAGCTAGTAAAGCAAAA+CGG | + | chr3.2:91787850-91787869 | MS.gene069973:intron | 25.0% |
| ! | TATTAGTTAGGAAAGCAAAA+CGG | + | chr3.2:91787087-91787106 | MS.gene069973:intron | 25.0% |
| ! | TATTCAAAAGATCAAAGAAG+TGG | + | chr3.2:91787565-91787584 | MS.gene069973:intron | 25.0% |
| ! | TGTTATAATCACAAGTGTTT+AGG | - | chr3.2:91786975-91786994 | None:intergenic | 25.0% |
| !! | TATGTCGTTTATTATTTGAC+TGG | - | chr3.2:91787811-91787830 | None:intergenic | 25.0% |
| !!! | AATAAATTAAAGGTATTCCG+CGG | - | chr3.2:91788274-91788293 | None:intergenic | 25.0% |
| !!! | AGTTGATTTTAAAGTGAAAG+GGG | + | chr3.2:91787625-91787644 | MS.gene069973:CDS | 25.0% |
| !!! | CAATTTTAATTTCAGGTTAC+TGG | + | chr3.2:91786328-91786347 | MS.gene069973:intron | 25.0% |
| !!! | GAAGTTGATTTTAAAGTGAA+AGG | + | chr3.2:91787623-91787642 | MS.gene069973:CDS | 25.0% |
| !!! | TCAAGTTGGTGAAATAATAA+CGG | - | chr3.2:91786496-91786515 | None:intergenic | 25.0% |
| AAAAGTGGTAAGTAAGAAAG+AGG | - | chr3.2:91786265-91786284 | None:intergenic | 30.0% | |
| AAATAGTGAAATTTGATCGG+GGG | + | chr3.2:91786561-91786580 | MS.gene069973:intron | 30.0% | |
| ATATTCATGGGACGTTTAAA+AGG | - | chr3.2:91787471-91787490 | None:intergenic | 30.0% | |
| CAGCACATGATTAAGTAATT+AGG | - | chr3.2:91786424-91786443 | None:intergenic | 30.0% | |
| CAGTCCTTTACATATTAGTT+AGG | + | chr3.2:91787075-91787094 | MS.gene069973:intron | 30.0% | |
| CCACGTGTTTAAAAATGATA+GGG | + | chr3.2:91787147-91787166 | MS.gene069973:intron | 30.0% | |
| GATCCAAAGATAATAAGCTA+GGG | - | chr3.2:91786124-91786143 | None:intergenic | 30.0% | |
| GCAACAAACATAATTGTTAG+AGG | + | chr3.2:91786894-91786913 | MS.gene069973:intron | 30.0% | |
| GTGTTTGGATATGCATAAAA+AGG | + | chr3.2:91786737-91786756 | MS.gene069973:intron | 30.0% | |
| TAATCACAAGCAATTTAGTC+GGG | - | chr3.2:91787389-91787408 | None:intergenic | 30.0% | |
| TCCACGTGTTTAAAAATGAT+AGG | + | chr3.2:91787146-91787165 | MS.gene069973:intron | 30.0% | |
| TGATCCAAAGATAATAAGCT+AGG | - | chr3.2:91786125-91786144 | None:intergenic | 30.0% | |
| TGGTGTACAATCATTATACT+CGG | - | chr3.2:91786458-91786477 | None:intergenic | 30.0% | |
| TTAATTACAACGTGTCAAGT+TGG | - | chr3.2:91786510-91786529 | None:intergenic | 30.0% | |
| ! | AATCCTCTTTGCAAAGTTTT+TGG | + | chr3.2:91788349-91788368 | MS.gene069973:CDS | 30.0% |
| ! | ATCCTCTTTGCAAAGTTTTT+GGG | + | chr3.2:91788350-91788369 | MS.gene069973:CDS | 30.0% |
| ! | CTTATTGAAACACACTGTTT+TGG | - | chr3.2:91787026-91787045 | None:intergenic | 30.0% |
| ! | TTGAGTATCACAAATTTGCT+TGG | + | chr3.2:91786764-91786783 | MS.gene069973:intron | 30.0% |
| !! | CGACATTTTGACATTGATTA+GGG | - | chr3.2:91787500-91787519 | None:intergenic | 30.0% |
| AAACTTTGCAAAGAGGATTG+TGG | - | chr3.2:91788348-91788367 | None:intergenic | 35.0% | |
| AACGGACGTATATACATTGT+TGG | - | chr3.2:91786478-91786497 | None:intergenic | 35.0% | |
| AAGATAATAAGCTAGGGTTC+CGG | - | chr3.2:91786118-91786137 | None:intergenic | 35.0% | |
| AATAGTGAAATTTGATCGGG+GGG | + | chr3.2:91786562-91786581 | MS.gene069973:intron | 35.0% | |
| AATCAATGGGGGTAGATTAT+AGG | + | chr3.2:91788080-91788099 | MS.gene069973:intron | 35.0% | |
| ATAAGAGAAAGACATGTCTC+TGG | - | chr3.2:91788177-91788196 | None:intergenic | 35.0% | |
| CAAGTGTTTAGGCTTCATTT+AGG | - | chr3.2:91786964-91786983 | None:intergenic | 35.0% | |
| CTAGAAGTAATACTATGTCG+TGG | + | chr3.2:91786536-91786555 | MS.gene069973:intron | 35.0% | |
| GAACCCTAGCTTATTATCTT+TGG | + | chr3.2:91786118-91786137 | MS.gene069973:CDS | 35.0% | |
| TAATCAATGTCAAAATGCCG+CGG | + | chr3.2:91788254-91788273 | MS.gene069973:intron | 35.0% | |
| TAATCACAAGCAATGTAGTC+AGG | - | chr3.2:91788144-91788163 | None:intergenic | 35.0% | |
| TATAGACCTAGGATTGTGTT+TGG | + | chr3.2:91786722-91786741 | MS.gene069973:intron | 35.0% | |
| TCACTTGTGAGCTTTCTATT+TGG | + | chr3.2:91788404-91788423 | MS.gene069973:CDS | 35.0% | |
| ! | CAAGATTACGATTTCTGAGA+AGG | - | chr3.2:91787269-91787288 | None:intergenic | 35.0% |
| ! | CTTTCTATTTGGCTCGTATA+AGG | + | chr3.2:91788415-91788434 | MS.gene069973:CDS | 35.0% |
| ! | GTAAAACTAGAGCATGGTTT+TGG | + | chr3.2:91786812-91786831 | MS.gene069973:intron | 35.0% |
| ! | TCCTCTTTGCAAAGTTTTTG+GGG | + | chr3.2:91788351-91788370 | MS.gene069973:CDS | 35.0% |
| ! | TTTAAAGTGAAAGGGGTAGA+GGG | + | chr3.2:91787632-91787651 | MS.gene069973:CDS | 35.0% |
| !! | CAGGTTACTGGTTTGATATA+TGG | + | chr3.2:91786340-91786359 | MS.gene069973:intron | 35.0% |
| !! | CCCTATCATTTTTAAACACG+TGG | - | chr3.2:91787150-91787169 | None:intergenic | 35.0% |
| !! | CGGCATTTTGACATTGATTA+AGG | - | chr3.2:91788254-91788273 | None:intergenic | 35.0% |
| !! | GCGACATTTTGACATTGATT+AGG | - | chr3.2:91787501-91787520 | None:intergenic | 35.0% |
| !! | TTGAAACACACTGTTTTGGA+AGG | - | chr3.2:91787022-91787041 | None:intergenic | 35.0% |
| !!! | AACACACTGTTTTGGAAAGA+CGG | - | chr3.2:91787018-91787037 | None:intergenic | 35.0% |
| !!! | TTTTAAAGTGAAAGGGGTAG+AGG | + | chr3.2:91787631-91787650 | MS.gene069973:CDS | 35.0% |
| AAGAAAGAGGAACGAACTTG+AGG | - | chr3.2:91786252-91786271 | None:intergenic | 40.0% | |
| AATGGGGGTAGATTATAGGA+TGG | + | chr3.2:91788084-91788103 | MS.gene069973:intron | 40.0% | |
| AGAAAGCTCACAAGTGAAGA+AGG | - | chr3.2:91788401-91788420 | None:intergenic | 40.0% | |
| AGATCAAAGAAGTGGTTCCA+TGG | + | chr3.2:91787573-91787592 | MS.gene069973:intron | 40.0% | |
| AGTAACTGGAGAAGAACACT+CGG | + | chr3.2:91786018-91786037 | MS.gene069973:CDS | 40.0% | |
| ATAGCGAAAAGGATCATCAG+AGG | - | chr3.2:91786202-91786221 | None:intergenic | 40.0% | |
| ATAGTGAAATTTGATCGGGG+GGG | + | chr3.2:91786563-91786582 | MS.gene069973:intron | 40.0% | |
| ATATGATGTGTGTCGAAAGC+AGG | + | chr3.2:91788469-91788488 | MS.gene069973:CDS | 40.0% | |
| ATTCAAGCAAGACCACCAAA+AGG | - | chr3.2:91787304-91787323 | None:intergenic | 40.0% | |
| ATTCCATGGGGCTATATGAT+AGG | + | chr3.2:91787333-91787352 | MS.gene069973:CDS | 40.0% | |
| CGAGTTTCAACATAGCGAAA+AGG | - | chr3.2:91786213-91786232 | None:intergenic | 40.0% | |
| GCATATCCAAACACAATCCT+AGG | - | chr3.2:91786731-91786750 | None:intergenic | 40.0% | |
| TCCCCAAAAACTTTGCAAAG+AGG | - | chr3.2:91788355-91788374 | None:intergenic | 40.0% | |
| TCGACACACATCATATTCTG+TGG | - | chr3.2:91788465-91788484 | None:intergenic | 40.0% | |
| TCGTTCGTGAACAATTCGAT+GGG | + | chr3.2:91786051-91786070 | MS.gene069973:CDS | 40.0% | |
| TCTTGCTCGAAACGAACATA+AGG | + | chr3.2:91787234-91787253 | MS.gene069973:intron | 40.0% | |
| TTCAAGCAAGACCACCAAAA+GGG | - | chr3.2:91787303-91787322 | None:intergenic | 40.0% | |
| TTCGTCGTAAAACTAGAGCA+TGG | + | chr3.2:91786806-91786825 | MS.gene069973:intron | 40.0% | |
| ! | CTGGTTGAAACACACTGTTT+TGG | - | chr3.2:91787792-91787811 | None:intergenic | 40.0% |
| ! | GTTTTCAGTTTCTCGAAACC+AGG | + | chr3.2:91787169-91787188 | MS.gene069973:intron | 40.0% |
| !! | TCTTTGCAAAGTTTTTGGGG+AGG | + | chr3.2:91788354-91788373 | MS.gene069973:CDS | 40.0% |
| !!! | AACTAGAGCATGGTTTTGGT+TGG | + | chr3.2:91786816-91786835 | MS.gene069973:intron | 40.0% |
| !!! | GGTTTTGGTTGGATGCATTT+GGG | + | chr3.2:91786827-91786846 | MS.gene069973:intron | 40.0% |
| !!! | TGGTTTTGGTTGGATGCATT+TGG | + | chr3.2:91786826-91786845 | MS.gene069973:intron | 40.0% |
| AAAGGGGTAGAGGGAAAAGT+TGG | + | chr3.2:91787641-91787660 | MS.gene069973:CDS | 45.0% | |
| AATTGCAGCACGATTCCATG+GGG | + | chr3.2:91787321-91787340 | MS.gene069973:intron | 45.0% | |
| ACGGTGCGTTTACATTAGTG+AGG | + | chr3.2:91787106-91787125 | MS.gene069973:intron | 45.0% | |
| CACAAGCAATGTAGTCAGGA+TGG | - | chr3.2:91788140-91788159 | None:intergenic | 45.0% | |
| CATATTCTGTGGTCTGAGAG+TGG | - | chr3.2:91788454-91788473 | None:intergenic | 45.0% | |
| CATCCTATCATATAGCCCCA+TGG | - | chr3.2:91787339-91787358 | None:intergenic | 45.0% | |
| CATGGGGCTATATGATAGGA+TGG | + | chr3.2:91787337-91787356 | MS.gene069973:CDS | 45.0% | |
| CGGTCTTGCTTGAATCAATG+GGG | + | chr3.2:91788068-91788087 | MS.gene069973:intron | 45.0% | |
| CTGACAAGGAAATCAGCATC+AGG | - | chr3.2:91788497-91788516 | None:intergenic | 45.0% | |
| GAATTGCAGCACGATTCCAT+GGG | + | chr3.2:91787320-91787339 | MS.gene069973:intron | 45.0% | |
| GCGGTCTTGCTTGAATCAAT+GGG | + | chr3.2:91788067-91788086 | MS.gene069973:intron | 45.0% | |
| GGTCTTGCTTGAATCAATGG+GGG | + | chr3.2:91788069-91788088 | MS.gene069973:intron | 45.0% | |
| GGTTCCATGGATGTTTGCAA+GGG | + | chr3.2:91787586-91787605 | MS.gene069973:CDS | 45.0% | |
| GTCGTTCGTGAACAATTCGA+TGG | + | chr3.2:91786050-91786069 | MS.gene069973:CDS | 45.0% | |
| GTGCTAGCATAGTAGCATGT+AGG | - | chr3.2:91788116-91788135 | None:intergenic | 45.0% | |
| TAAACACGTTCTGCTGCGTT+TGG | - | chr3.2:91787899-91787918 | None:intergenic | 45.0% | |
| TAGTGAAATTTGATCGGGGG+GGG | + | chr3.2:91786564-91786583 | MS.gene069973:intron | 45.0% | |
| TGAATTGCAGCACGATTCCA+TGG | + | chr3.2:91787319-91787338 | MS.gene069973:intron | 45.0% | |
| TGGTTCCATGGATGTTTGCA+AGG | + | chr3.2:91787585-91787604 | MS.gene069973:CDS | 45.0% | |
| TTCAAGCGAGAAGAGACGAA+CGG | - | chr3.2:91787984-91788003 | None:intergenic | 45.0% | |
| TTCGTGAACAATTCGATGGG+TGG | + | chr3.2:91786054-91786073 | MS.gene069973:CDS | 45.0% | |
| TTGCAAAGAGGATTGTGGCA+CGG | - | chr3.2:91788343-91788362 | None:intergenic | 45.0% | |
| TTGCAAAGCCCAACTCAAGT+CGG | + | chr3.2:91787952-91787971 | MS.gene069973:intron | 45.0% | |
| ! | ATTGATTCAAGCAAGACCGC+CGG | - | chr3.2:91788067-91788086 | None:intergenic | 45.0% |
| ! | GTTTTCGGTTTCTCGAAACC+AGG | + | chr3.2:91787929-91787948 | MS.gene069973:intron | 45.0% |
| ! | TCGCGTTTGAGATCTTGATC+AGG | - | chr3.2:91786150-91786169 | None:intergenic | 45.0% |
| ! | TGGTTGGATGCATTTGGGTT+TGG | + | chr3.2:91786832-91786851 | MS.gene069973:intron | 45.0% |
| ! | TTGACCACGAAGTTCCCTTT+TGG | + | chr3.2:91787286-91787305 | MS.gene069973:intron | 45.0% |
| !! | ACAAACAGCACGTACTGACT+TGG | - | chr3.2:91787210-91787229 | None:intergenic | 45.0% |
| !! | CAAACAGCACGTACTGACTT+GGG | - | chr3.2:91787209-91787228 | None:intergenic | 45.0% |
| !! | TTGCAAAGTTTTTGGGGAGG+AGG | + | chr3.2:91788357-91788376 | MS.gene069973:CDS | 45.0% |
| !!! | AACACACTGTTTTGGAAGGC+TGG | - | chr3.2:91787784-91787803 | None:intergenic | 45.0% |
| !!! | ACATATTTTAAATAAATTAA+AGG | - | chr3.2:91788284-91788303 | None:intergenic | 5.0% |
| !!! | ATTAATATATTTTTTTAATG+TGG | - | chr3.2:91788200-91788219 | None:intergenic | 5.0% |
| AATTCGATGGGTGGTCTGAG+AGG | + | chr3.2:91786063-91786082 | MS.gene069973:CDS | 50.0% | |
| ACCACCAAAAGGGAACTTCG+TGG | - | chr3.2:91787293-91787312 | None:intergenic | 50.0% | |
| ACCGTGACGTCTCTGGTATA+TGG | + | chr3.2:91787699-91787718 | MS.gene069973:CDS | 50.0% | |
| ACGGTGCGTTCAGATTAGTG+AGG | + | chr3.2:91787869-91787888 | MS.gene069973:intron | 50.0% | |
| ACGTCTCTGGTATATGGGAG+TGG | + | chr3.2:91787705-91787724 | MS.gene069973:CDS | 50.0% | |
| AGGAAGCAACCTCGCTTCTT+GGG | + | chr3.2:91786086-91786105 | MS.gene069973:CDS | 50.0% | |
| AGTGAAATTTGATCGGGGGG+GGG | + | chr3.2:91786565-91786584 | MS.gene069973:intron | 50.0% | |
| CCCATATACCAGAGACGTCA+CGG | - | chr3.2:91787703-91787722 | None:intergenic | 50.0% | |
| CCCTCACTCATTCTCACTTG+CGG | - | chr3.2:91787668-91787687 | None:intergenic | 50.0% | |
| CCGCAAGTGAGAATGAGTGA+GGG | + | chr3.2:91787665-91787684 | MS.gene069973:CDS | 50.0% | |
| CCGTGACGTCTCTGGTATAT+GGG | + | chr3.2:91787700-91787719 | MS.gene069973:CDS | 50.0% | |
| CGAACTTGAGGATCAGGAAC+AGG | - | chr3.2:91786240-91786259 | None:intergenic | 50.0% | |
| CGCAAGTGAGAATGAGTGAG+GGG | + | chr3.2:91787666-91787685 | MS.gene069973:CDS | 50.0% | |
| CGTCTCTGGTATATGGGAGT+GGG | + | chr3.2:91787706-91787725 | MS.gene069973:CDS | 50.0% | |
| CTCTCCCTTGCAAACATCCA+TGG | - | chr3.2:91787593-91787612 | None:intergenic | 50.0% | |
| GAGGAACGAACTTGAGGATC+AGG | - | chr3.2:91786246-91786265 | None:intergenic | 50.0% | |
| GGCGGTCTTGCTTGAATCAA+TGG | + | chr3.2:91788066-91788085 | MS.gene069973:intron | 50.0% | |
| GTTTGCAAGGGAGAGAGAGT+GGG | + | chr3.2:91787598-91787617 | MS.gene069973:CDS | 50.0% | |
| TCCGCAAGTGAGAATGAGTG+AGG | + | chr3.2:91787664-91787683 | MS.gene069973:CDS | 50.0% | |
| TGTTTGCAAGGGAGAGAGAG+TGG | + | chr3.2:91787597-91787616 | MS.gene069973:CDS | 50.0% | |
| TTGACCACGAAACTCCCTTC+CGG | + | chr3.2:91788045-91788064 | MS.gene069973:intron | 50.0% | |
| TTTGCAAGGGAGAGAGAGTG+GGG | + | chr3.2:91787599-91787618 | MS.gene069973:CDS | 50.0% | |
| ! | ACCACGAAGTTCCCTTTTGG+TGG | + | chr3.2:91787289-91787308 | MS.gene069973:intron | 50.0% |
| !! | TTGAGTTGGGCTTTGCAACC+TGG | - | chr3.2:91787950-91787969 | None:intergenic | 50.0% |
| AACACGTGGAACGCTGCGTT+TGG | - | chr3.2:91787136-91787155 | None:intergenic | 55.0% | |
| ATTCAAGCAAGACCGCCGGA+AGG | - | chr3.2:91788063-91788082 | None:intergenic | 55.0% | |
| GAAGAACACTCGGCAACGCA+AGG | + | chr3.2:91786028-91786047 | MS.gene069973:CDS | 55.0% | |
| GAGGAAGCAACCTCGCTTCT+TGG | + | chr3.2:91786085-91786104 | MS.gene069973:CDS | 55.0% | |
| GTGAAATTTGATCGGGGGGG+GGG | + | chr3.2:91786566-91786585 | MS.gene069973:intron | 55.0% | |
| TTCAAGCAAGACCGCCGGAA+GGG | - | chr3.2:91788062-91788081 | None:intergenic | 55.0% | |
| TTCTGTGGTCTGAGAGTGGC+TGG | - | chr3.2:91788450-91788469 | None:intergenic | 55.0% | |
| ! | TGGGTTGGACTTCTGCAACC+TGG | - | chr3.2:91787190-91787209 | None:intergenic | 55.0% |
| !! | CAGCACGTACTGACTTGGGT+TGG | - | chr3.2:91787205-91787224 | None:intergenic | 55.0% |
| !! | GGCACAGACCGACTTGAGTT+GGG | - | chr3.2:91787963-91787982 | None:intergenic | 55.0% |
| !! | GGTATATGGGAGTGGGCTGT+AGG | + | chr3.2:91787713-91787732 | MS.gene069973:CDS | 55.0% |
| ACCACGAAACTCCCTTCCGG+CGG | + | chr3.2:91788048-91788067 | MS.gene069973:intron | 60.0% | |
| TCGATGGGTGGTCTGAGAGG+AGG | + | chr3.2:91786066-91786085 | MS.gene069973:CDS | 60.0% | |
| TTGCGTGACCGTGACGTCTC+TGG | + | chr3.2:91787692-91787711 | MS.gene069973:CDS | 60.0% | |
| ! | CTCGCTTCTTGGGTTGTCGC+CGG | + | chr3.2:91786096-91786115 | MS.gene069973:CDS | 60.0% |
| !! | ATGGGAGTGGGCTGTAGGAG+TGG | + | chr3.2:91787718-91787737 | MS.gene069973:CDS | 60.0% |
| !! | CGGCACAGACCGACTTGAGT+TGG | - | chr3.2:91787964-91787983 | None:intergenic | 60.0% |
| ACCGCCGGAAGGGAGTTTCG+TGG | - | chr3.2:91788052-91788071 | None:intergenic | 65.0% | |
| CGGCGACAACCCAAGAAGCG+AGG | - | chr3.2:91786098-91786117 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 91786012 | 91788520 | 91786012 | ID=MS.gene069973 |
| chr3.2 | mRNA | 91786012 | 91788520 | 91786012 | ID=MS.gene069973.t1;Parent=MS.gene069973 |
| chr3.2 | exon | 91786012 | 91786254 | 91786012 | ID=MS.gene069973.t1.exon1;Parent=MS.gene069973.t1 |
| chr3.2 | CDS | 91786012 | 91786254 | 91786012 | ID=cds.MS.gene069973.t1;Parent=MS.gene069973.t1 |
| chr3.2 | exon | 91787329 | 91787358 | 91787329 | ID=MS.gene069973.t1.exon2;Parent=MS.gene069973.t1 |
| chr3.2 | CDS | 91787329 | 91787358 | 91787329 | ID=cds.MS.gene069973.t1;Parent=MS.gene069973.t1 |
| chr3.2 | exon | 91787575 | 91787739 | 91787575 | ID=MS.gene069973.t1.exon3;Parent=MS.gene069973.t1 |
| chr3.2 | CDS | 91787575 | 91787739 | 91787575 | ID=cds.MS.gene069973.t1;Parent=MS.gene069973.t1 |
| chr3.2 | exon | 91788329 | 91788520 | 91788329 | ID=MS.gene069973.t1.exon4;Parent=MS.gene069973.t1 |
| chr3.2 | CDS | 91788329 | 91788520 | 91788329 | ID=cds.MS.gene069973.t1;Parent=MS.gene069973.t1 |
| Gene Sequence |
| Protein sequence |
