Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070229.t1 | XP_003594749.2 | 94.5 | 163 | 9 | 0 | 1 | 163 | 1 | 163 | 2.80E-81 | 311.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070229.t1 | P87132 | 26.2 | 149 | 96 | 3 | 9 | 157 | 435 | 569 | 2.3e-07 | 57.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070229.t1 | A2Q2X4 | 94.5 | 163 | 9 | 0 | 1 | 163 | 1 | 163 | 2.0e-81 | 311.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene070229 | MS.gene92557 | PPI |
MS.gene070229 | MS.gene048106 | PPI |
MS.gene070229 | MS.gene73234 | PPI |
MS.gene070229 | MS.gene037687 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070229.t1 | MTR_2g034200 | 94.479 | 163 | 9 | 0 | 1 | 163 | 1 | 163 | 1.97e-107 | 303 |
MS.gene070229.t1 | MTR_5g077130 | 50.955 | 157 | 77 | 0 | 1 | 157 | 1 | 157 | 1.53e-54 | 170 |
MS.gene070229.t1 | MTR_4g019800 | 49.045 | 157 | 80 | 0 | 1 | 157 | 1 | 157 | 2.87e-53 | 166 |
MS.gene070229.t1 | MTR_5g077130 | 50.633 | 158 | 77 | 1 | 1 | 157 | 1 | 158 | 3.48e-53 | 166 |
MS.gene070229.t1 | MTR_4g064933 | 48.428 | 159 | 82 | 0 | 1 | 159 | 1 | 159 | 5.47e-53 | 166 |
MS.gene070229.t1 | MTR_7g065770 | 42.675 | 157 | 90 | 0 | 1 | 157 | 1 | 157 | 6.28e-43 | 140 |
MS.gene070229.t1 | MTR_1g054750 | 31.098 | 164 | 102 | 3 | 9 | 163 | 26 | 187 | 8.71e-20 | 82.0 |
MS.gene070229.t1 | MTR_1g087200 | 29.487 | 156 | 102 | 2 | 5 | 157 | 6 | 156 | 9.11e-19 | 78.6 |
MS.gene070229.t1 | MTR_1g083950 | 28.485 | 165 | 92 | 4 | 3 | 157 | 7 | 155 | 4.45e-18 | 77.0 |
MS.gene070229.t1 | MTR_1g054765 | 28.488 | 172 | 108 | 2 | 6 | 163 | 4 | 174 | 7.51e-18 | 76.6 |
MS.gene070229.t1 | MTR_2g089350 | 31.515 | 165 | 99 | 5 | 2 | 157 | 22 | 181 | 1.32e-17 | 77.0 |
MS.gene070229.t1 | MTR_5g065980 | 29.714 | 175 | 106 | 4 | 1 | 160 | 1 | 173 | 8.26e-16 | 71.2 |
MS.gene070229.t1 | MTR_5g065980 | 27.326 | 172 | 112 | 3 | 1 | 160 | 1 | 171 | 9.51e-16 | 70.9 |
MS.gene070229.t1 | MTR_1g088640 | 28.313 | 166 | 91 | 4 | 9 | 163 | 16 | 164 | 2.80e-15 | 69.3 |
MS.gene070229.t1 | MTR_1g088640 | 28.916 | 166 | 93 | 4 | 9 | 163 | 16 | 167 | 6.69e-15 | 68.6 |
MS.gene070229.t1 | MTR_1g088620 | 40.909 | 66 | 39 | 0 | 98 | 163 | 221 | 286 | 5.65e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070229.t1 | AT3G17020 | 57.595 | 158 | 66 | 1 | 2 | 158 | 4 | 161 | 2.13e-68 | 205 |
MS.gene070229.t1 | AT3G03270 | 51.572 | 159 | 77 | 0 | 1 | 159 | 1 | 159 | 1.03e-53 | 167 |
MS.gene070229.t1 | AT3G53990 | 46.497 | 157 | 84 | 0 | 1 | 157 | 1 | 157 | 2.05e-47 | 151 |
MS.gene070229.t1 | AT3G03270 | 48.889 | 135 | 69 | 0 | 1 | 135 | 1 | 135 | 1.04e-39 | 133 |
MS.gene070229.t1 | AT3G17020 | 47.170 | 106 | 55 | 1 | 2 | 106 | 4 | 109 | 3.74e-31 | 108 |
MS.gene070229.t1 | AT3G62550 | 31.515 | 165 | 98 | 4 | 5 | 163 | 7 | 162 | 6.40e-22 | 86.7 |
MS.gene070229.t1 | AT3G11930 | 31.325 | 166 | 95 | 5 | 5 | 157 | 33 | 192 | 6.27e-20 | 82.4 |
MS.gene070229.t1 | AT3G11930 | 31.138 | 167 | 95 | 5 | 5 | 157 | 33 | 193 | 8.70e-20 | 82.0 |
MS.gene070229.t1 | AT3G11930 | 30.952 | 168 | 95 | 5 | 5 | 157 | 33 | 194 | 1.14e-19 | 82.0 |
MS.gene070229.t1 | AT1G11360 | 31.707 | 164 | 99 | 4 | 2 | 157 | 35 | 193 | 2.54e-19 | 82.0 |
MS.gene070229.t1 | AT1G11360 | 31.707 | 164 | 99 | 4 | 2 | 157 | 35 | 193 | 2.54e-19 | 82.0 |
MS.gene070229.t1 | AT1G11360 | 31.707 | 164 | 99 | 4 | 2 | 157 | 35 | 193 | 2.54e-19 | 82.0 |
MS.gene070229.t1 | AT1G11360 | 31.707 | 164 | 99 | 4 | 2 | 157 | 35 | 193 | 2.54e-19 | 82.0 |
MS.gene070229.t1 | AT1G68300 | 32.298 | 161 | 90 | 6 | 5 | 158 | 10 | 158 | 6.25e-19 | 79.0 |
MS.gene070229.t1 | AT1G09740 | 27.451 | 153 | 107 | 1 | 9 | 157 | 12 | 164 | 4.73e-18 | 77.0 |
MS.gene070229.t1 | AT1G09740 | 27.451 | 153 | 107 | 1 | 9 | 157 | 12 | 164 | 4.73e-18 | 77.0 |
MS.gene070229.t1 | AT3G53990 | 37.000 | 100 | 63 | 0 | 1 | 100 | 1 | 100 | 1.32e-17 | 74.7 |
MS.gene070229.t1 | AT3G58450 | 27.778 | 162 | 97 | 3 | 9 | 157 | 34 | 188 | 2.90e-15 | 70.5 |
MS.gene070229.t1 | AT3G58450 | 27.879 | 165 | 86 | 5 | 9 | 157 | 34 | 181 | 4.52e-15 | 69.7 |
MS.gene070229.t1 | AT3G11930 | 26.667 | 195 | 97 | 6 | 3 | 157 | 31 | 219 | 3.09e-14 | 68.2 |
MS.gene070229.t1 | AT2G47710 | 31.034 | 87 | 52 | 1 | 79 | 157 | 70 | 156 | 2.25e-11 | 59.3 |
Find 38 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCCCATGCTCATACTCTTC+TGG | 0.183094 | 2.2:+54686353 | None:intergenic |
GTATATCTATCTACCTTCTA+AGG | 0.227136 | 2.2:+54685196 | None:intergenic |
CCCCATGCTCATACTCTTCT+GGG | 0.343838 | 2.2:+54686354 | None:intergenic |
TTTCTCACCATGCAGCATTA+AGG | 0.344250 | 2.2:-54686441 | MS.gene070229:CDS |
GGTACTAGTAAAGGTCTATT+GGG | 0.365112 | 2.2:-54685301 | MS.gene070229:CDS |
ATGCAGCTGTGGGAAGTTAC+TGG | 0.380362 | 2.2:-54686329 | MS.gene070229:CDS |
TGGTACTAGTAAAGGTCTAT+TGG | 0.396771 | 2.2:-54685302 | MS.gene070229:CDS |
AATGGCAAGTGCAAGGAGAT+TGG | 0.413758 | 2.2:-54686477 | MS.gene070229:CDS |
GTTACTGTGGTGAAGACTTC+AGG | 0.414155 | 2.2:-54684710 | MS.gene070229:CDS |
GAGGCCTTGGCACCCTTAGA+AGG | 0.426886 | 2.2:-54685209 | MS.gene070229:intron |
GAAGTCTTCACCACAGTAAC+GGG | 0.436615 | 2.2:+54684713 | None:intergenic |
ATGGCAAGTGCAAGGAGATT+GGG | 0.442783 | 2.2:-54686476 | MS.gene070229:CDS |
TTTCTCTTCAGGGCGATAAT+GGG | 0.452562 | 2.2:-54684773 | MS.gene070229:intron |
TCATGCAGCTCTCACACCTC+TGG | 0.473488 | 2.2:-54685525 | MS.gene070229:intron |
ATAGGTTGTGGTACTAGTAA+AGG | 0.511414 | 2.2:-54685310 | MS.gene070229:intron |
ACCATGGGGAACAGAGGCCT+TGG | 0.532433 | 2.2:-54685222 | MS.gene070229:CDS |
CGCCCAGAAGAGTATGAGCA+TGG | 0.542531 | 2.2:-54686356 | MS.gene070229:CDS |
GTGGATAACATTGTGAAAGA+AGG | 0.548533 | 2.2:-54686404 | MS.gene070229:CDS |
GCCAAGGCCTCTGTTCCCCA+TGG | 0.562364 | 2.2:+54685221 | None:intergenic |
TATATCTATCTACCTTCTAA+GGG | 0.564234 | 2.2:+54685197 | None:intergenic |
AAGGAGATTGGGCATAGCTA+TGG | 0.566367 | 2.2:-54686465 | MS.gene070229:CDS |
AACAATCAATGGCAAGTGCA+AGG | 0.567610 | 2.2:-54686484 | None:intergenic |
TGAAGTCTTCACCACAGTAA+CGG | 0.576543 | 2.2:+54684712 | None:intergenic |
GGCGAATGATAATAAGAATG+AGG | 0.581664 | 2.2:+54686375 | None:intergenic |
ACCTCTTGATAGTCTTACCA+TGG | 0.588148 | 2.2:-54685238 | MS.gene070229:CDS |
GCCCAGAAGAGTATGAGCAT+GGG | 0.597596 | 2.2:-54686355 | MS.gene070229:CDS |
CCTCTTGATAGTCTTACCAT+GGG | 0.602575 | 2.2:-54685237 | MS.gene070229:CDS |
TCTACCTTCTAAGGGTGCCA+AGG | 0.607241 | 2.2:+54685205 | None:intergenic |
TGCTTCTTGTCCCGTTACTG+TGG | 0.614193 | 2.2:-54684723 | MS.gene070229:CDS |
AGTCTTACCATGGGGAACAG+AGG | 0.630320 | 2.2:-54685228 | MS.gene070229:CDS |
CCCAGAAGAGTATGAGCATG+GGG | 0.641564 | 2.2:-54686354 | MS.gene070229:CDS |
AGCATGGGGAAATGCAGCTG+TGG | 0.642028 | 2.2:-54686340 | MS.gene070229:CDS |
TGAAAAGCCTTAATGCTGCA+TGG | 0.663454 | 2.2:+54686434 | None:intergenic |
GCATGGGGAAATGCAGCTGT+GGG | 0.667815 | 2.2:-54686339 | MS.gene070229:CDS |
GAGTTAGTGAACTCAGCCAG+AGG | 0.668338 | 2.2:+54685509 | None:intergenic |
GTACTAGTAAAGGTCTATTG+GGG | 0.686093 | 2.2:-54685300 | MS.gene070229:CDS |
CCCATGGTAAGACTATCAAG+AGG | 0.706078 | 2.2:+54685237 | None:intergenic |
CTCTTGATAGTCTTACCATG+GGG | 0.739880 | 2.2:-54685236 | MS.gene070229:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTCATATATTATTAATGT+AGG | - | chr2.2:54685807-54685826 | MS.gene070229:intron | 10.0% |
!!! | TTTAAAATGACTAATAAAAA+GGG | + | chr2.2:54686012-54686031 | None:intergenic | 10.0% |
!! | AAACTACAATTCTATTTATT+TGG | - | chr2.2:54685607-54685626 | MS.gene070229:intron | 15.0% |
!! | AACTACAATTCTATTTATTT+GGG | - | chr2.2:54685608-54685627 | MS.gene070229:intron | 15.0% |
!! | CAAAGTTAGTATTATTAATA+AGG | - | chr2.2:54686171-54686190 | MS.gene070229:intron | 15.0% |
!! | TTAAAATGACTAATAAAAAG+GGG | + | chr2.2:54686011-54686030 | None:intergenic | 15.0% |
!!! | CTTTAAAATGACTAATAAAA+AGG | + | chr2.2:54686013-54686032 | None:intergenic | 15.0% |
!!! | GATTATCTTACAAATTTTTT+GGG | - | chr2.2:54684951-54684970 | MS.gene070229:intron | 15.0% |
!!! | TGATTATCTTACAAATTTTT+TGG | - | chr2.2:54684950-54684969 | MS.gene070229:intron | 15.0% |
!!! | TTTTACAAATTATTAGACAT+AGG | - | chr2.2:54684899-54684918 | MS.gene070229:intron | 15.0% |
!! | CCAAAGTATATTTCAAATTA+GGG | - | chr2.2:54686228-54686247 | MS.gene070229:intron | 20.0% |
!! | TAGTTAAAATAAAATCTCAC+AGG | - | chr2.2:54686147-54686166 | MS.gene070229:intron | 20.0% |
!! | TCCAAAGTATATTTCAAATT+AGG | - | chr2.2:54686227-54686246 | MS.gene070229:intron | 20.0% |
!!! | AAAAGTATTATCAATTGAAG+TGG | - | chr2.2:54684922-54684941 | MS.gene070229:intron | 20.0% |
!!! | AACTATTCATTTTAATCTGA+AGG | - | chr2.2:54685350-54685369 | MS.gene070229:intron | 20.0% |
!!! | ATCTTTTTTTTTTCTCTTCA+GGG | - | chr2.2:54686390-54686409 | MS.gene070229:CDS | 20.0% |
!!! | ATTGTAGCTTTTAAAATACA+TGG | + | chr2.2:54685451-54685470 | None:intergenic | 20.0% |
!!! | TATCTTTTTTTTTTCTCTTC+AGG | - | chr2.2:54686389-54686408 | MS.gene070229:CDS | 20.0% |
! | AAAAATGCAACTCTCAATTT+CGG | + | chr2.2:54686284-54686303 | None:intergenic | 25.0% |
! | ATAGAGATAAAACAAAAACG+AGG | - | chr2.2:54685268-54685287 | MS.gene070229:CDS | 25.0% |
! | GTATATTTCAAATTAGGGTA+AGG | - | chr2.2:54686233-54686252 | MS.gene070229:intron | 25.0% |
! | TATATCTATCTACCTTCTAA+GGG | + | chr2.2:54685979-54685998 | None:intergenic | 25.0% |
!! | CCCTAATTTGAAATATACTT+TGG | + | chr2.2:54686231-54686250 | None:intergenic | 25.0% |
!! | CTTAGTACTTTTCATTTACA+AGG | - | chr2.2:54685413-54685432 | MS.gene070229:intron | 25.0% |
!!! | TAGCAATTTTAAGTACTTCA+GGG | + | chr2.2:54685723-54685742 | None:intergenic | 25.0% |
AAAATGCAACTCTCAATTTC+GGG | + | chr2.2:54686283-54686302 | None:intergenic | 30.0% | |
ATAAAACAAAAACGAGGTAG+AGG | - | chr2.2:54685274-54685293 | MS.gene070229:CDS | 30.0% | |
GTATATCTATCTACCTTCTA+AGG | + | chr2.2:54685980-54685999 | None:intergenic | 30.0% | |
TTGAATTGACCTAATGTTGT+TGG | - | chr2.2:54685480-54685499 | MS.gene070229:CDS | 30.0% | |
! | ATTTTGAATCATGCTCTTTG+AGG | - | chr2.2:54684977-54684996 | MS.gene070229:intron | 30.0% |
! | GATTCTTTCTACGTCAATTT+TGG | - | chr2.2:54685548-54685567 | MS.gene070229:intron | 30.0% |
! | GTTTTCAAACCAACAACATT+AGG | + | chr2.2:54685492-54685511 | None:intergenic | 30.0% |
!! | AATTTTGACAAACACTAGCT+AGG | - | chr2.2:54685156-54685175 | MS.gene070229:intron | 30.0% |
!! | GTAGCAATTTTAAGTACTTC+AGG | + | chr2.2:54685724-54685743 | None:intergenic | 30.0% |
!!! | AGTAACTTTGAGATTTTGTG+TGG | - | chr2.2:54685839-54685858 | MS.gene070229:intron | 30.0% |
!!! | TCTTACCTTTTTTTGCTCTA+TGG | + | chr2.2:54685752-54685771 | None:intergenic | 30.0% |
AAATGCAACTCTCAATTTCG+GGG | + | chr2.2:54686282-54686301 | None:intergenic | 35.0% | |
AACATTAGGTCAATTCAAGC+GGG | + | chr2.2:54685478-54685497 | None:intergenic | 35.0% | |
AACCACCATAGAGCAAAAAA+AGG | - | chr2.2:54685744-54685763 | MS.gene070229:intron | 35.0% | |
AATCCAAACACACATGAAGA+AGG | + | chr2.2:54685100-54685119 | None:intergenic | 35.0% | |
ATAGGTTGTGGTACTAGTAA+AGG | - | chr2.2:54685863-54685882 | MS.gene070229:intron | 35.0% | |
ATCCAAACACACATGAAGAA+GGG | + | chr2.2:54685099-54685118 | None:intergenic | 35.0% | |
CAACATTAGGTCAATTCAAG+CGG | + | chr2.2:54685479-54685498 | None:intergenic | 35.0% | |
CTATCGAGTGTCAACTTAAA+TGG | + | chr2.2:54685020-54685039 | None:intergenic | 35.0% | |
GGCGAATGATAATAAGAATG+AGG | + | chr2.2:54684801-54684820 | None:intergenic | 35.0% | |
GGTACTAGTAAAGGTCTATT+GGG | - | chr2.2:54685872-54685891 | MS.gene070229:intron | 35.0% | |
GTACTAGTAAAGGTCTATTG+GGG | - | chr2.2:54685873-54685892 | MS.gene070229:intron | 35.0% | |
GTGGATAACATTGTGAAAGA+AGG | - | chr2.2:54684769-54684788 | MS.gene070229:intron | 35.0% | |
TGACTAATAAAAAGGGGCTA+AGG | + | chr2.2:54686005-54686024 | None:intergenic | 35.0% | |
TGGTACTAGTAAAGGTCTAT+TGG | - | chr2.2:54685871-54685890 | MS.gene070229:intron | 35.0% | |
! | TCTTTCTACGTCAATTTTGG+TGG | - | chr2.2:54685551-54685570 | MS.gene070229:intron | 35.0% |
!! | ATGTTGTTGGTTTGAAAACC+TGG | - | chr2.2:54685493-54685512 | MS.gene070229:CDS | 35.0% |
!! | CGAATAGGATGAGTTTTGAT+TGG | - | chr2.2:54685304-54685323 | MS.gene070229:CDS | 35.0% |
!! | TTTGAGATTTTGTGTGGCAT+AGG | - | chr2.2:54685845-54685864 | MS.gene070229:intron | 35.0% |
!!! | GAGAGAACACATTTTTTACG+TGG | + | chr2.2:54685054-54685073 | None:intergenic | 35.0% |
!!! | TACCTTTTTTTGCTCTATGG+TGG | + | chr2.2:54685749-54685768 | None:intergenic | 35.0% |
AATTTCGGGGTGGTAGATTT+AGG | + | chr2.2:54686269-54686288 | None:intergenic | 40.0% | |
ATTTCGGGGTGGTAGATTTA+GGG | + | chr2.2:54686268-54686287 | None:intergenic | 40.0% | |
GGTAGAGGTAACAAACGAAT+AGG | - | chr2.2:54685289-54685308 | MS.gene070229:CDS | 40.0% | |
TGAAAAGCCTTAATGCTGCA+TGG | + | chr2.2:54684742-54684761 | None:intergenic | 40.0% | |
TGAAGTCTTCACCACAGTAA+CGG | + | chr2.2:54686464-54686483 | None:intergenic | 40.0% | |
TTTCTCACCATGCAGCATTA+AGG | - | chr2.2:54684732-54684751 | MS.gene070229:CDS | 40.0% | |
TTTCTCTTCAGGGCGATAAT+GGG | - | chr2.2:54686400-54686419 | MS.gene070229:CDS | 40.0% | |
! | ACCTCTTGATAGTCTTACCA+TGG | - | chr2.2:54685935-54685954 | MS.gene070229:intron | 40.0% |
! | ATTTTGTGTGGCATAGGTTG+TGG | - | chr2.2:54685851-54685870 | MS.gene070229:intron | 40.0% |
! | CCTCTTGATAGTCTTACCAT+GGG | - | chr2.2:54685936-54685955 | MS.gene070229:intron | 40.0% |
! | CTCTTGATAGTCTTACCATG+GGG | - | chr2.2:54685937-54685956 | MS.gene070229:intron | 40.0% |
! | GCAGCATTAAGGCTTTTCAA+TGG | - | chr2.2:54684743-54684762 | MS.gene070229:CDS | 40.0% |
! | TAAGGCTTTTCAATGGACAG+TGG | - | chr2.2:54684750-54684769 | MS.gene070229:CDS | 40.0% |
! | TTTTCTCTTCAGGGCGATAA+TGG | - | chr2.2:54686399-54686418 | MS.gene070229:CDS | 40.0% |
AAGGAGATTGGGCATAGCTA+TGG | - | chr2.2:54684708-54684727 | MS.gene070229:CDS | 45.0% | |
ATGGCAAGTGCAAGGAGATT+GGG | - | chr2.2:54684697-54684716 | MS.gene070229:CDS | 45.0% | |
CCCATGGTAAGACTATCAAG+AGG | + | chr2.2:54685939-54685958 | None:intergenic | 45.0% | |
GAAGTCTTCACCACAGTAAC+GGG | + | chr2.2:54686463-54686482 | None:intergenic | 45.0% | |
GAGTGTGCTCTTCTTTATCG+AGG | - | chr2.2:54685515-54685534 | MS.gene070229:CDS | 45.0% | |
GTTACTGTGGTGAAGACTTC+AGG | - | chr2.2:54686463-54686482 | MS.gene070229:CDS | 45.0% | |
TGCCCTTCTTCATGTGTGTT+TGG | - | chr2.2:54685094-54685113 | MS.gene070229:intron | 45.0% | |
! | GATAAAGAAGAGCACACTCC+AGG | + | chr2.2:54685514-54685533 | None:intergenic | 45.0% |
AGTCTTACCATGGGGAACAG+AGG | - | chr2.2:54685945-54685964 | MS.gene070229:intron | 50.0% | |
ATGCAGCTGTGGGAAGTTAC+TGG | - | chr2.2:54684844-54684863 | MS.gene070229:intron | 50.0% | |
CCCCATGCTCATACTCTTCT+GGG | + | chr2.2:54684822-54684841 | None:intergenic | 50.0% | |
GAGTTAGTGAACTCAGCCAG+AGG | + | chr2.2:54685667-54685686 | None:intergenic | 50.0% | |
TCCCCATGCTCATACTCTTC+TGG | + | chr2.2:54684823-54684842 | None:intergenic | 50.0% | |
TGCAACTCTCAATTTCGGGG+TGG | + | chr2.2:54686279-54686298 | None:intergenic | 50.0% | |
TGCTTCTTGTCCCGTTACTG+TGG | - | chr2.2:54686450-54686469 | MS.gene070229:CDS | 50.0% | |
! | CCCAGAAGAGTATGAGCATG+GGG | - | chr2.2:54684819-54684838 | MS.gene070229:intron | 50.0% |
! | GCCCAGAAGAGTATGAGCAT+GGG | - | chr2.2:54684818-54684837 | MS.gene070229:intron | 50.0% |
!! | TCTACCTTCTAAGGGTGCCA+AGG | + | chr2.2:54685971-54685990 | None:intergenic | 50.0% |
AGCATGGGGAAATGCAGCTG+TGG | - | chr2.2:54684833-54684852 | MS.gene070229:intron | 55.0% | |
GCATGGGGAAATGCAGCTGT+GGG | - | chr2.2:54684834-54684853 | MS.gene070229:intron | 55.0% | |
TCATGCAGCTCTCACACCTC+TGG | - | chr2.2:54685648-54685667 | MS.gene070229:intron | 55.0% | |
! | CGCCCAGAAGAGTATGAGCA+TGG | - | chr2.2:54684817-54684836 | MS.gene070229:intron | 55.0% |
ACCATGGGGAACAGAGGCCT+TGG | - | chr2.2:54685951-54685970 | MS.gene070229:intron | 60.0% | |
GAGGCCTTGGCACCCTTAGA+AGG | - | chr2.2:54685964-54685983 | MS.gene070229:intron | 60.0% | |
GCCAAGGCCTCTGTTCCCCA+TGG | + | chr2.2:54685955-54685974 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 54684697 | 54686498 | 54684697 | ID=MS.gene070229 |
chr2.2 | mRNA | 54684697 | 54686498 | 54684697 | ID=MS.gene070229.t1;Parent=MS.gene070229 |
chr2.2 | exon | 54686324 | 54686498 | 54686324 | ID=MS.gene070229.t1.exon1;Parent=MS.gene070229.t1 |
chr2.2 | CDS | 54686324 | 54686498 | 54686324 | ID=cds.MS.gene070229.t1;Parent=MS.gene070229.t1 |
chr2.2 | exon | 54685430 | 54685539 | 54685430 | ID=MS.gene070229.t1.exon2;Parent=MS.gene070229.t1 |
chr2.2 | CDS | 54685430 | 54685539 | 54685430 | ID=cds.MS.gene070229.t1;Parent=MS.gene070229.t1 |
chr2.2 | exon | 54685210 | 54685328 | 54685210 | ID=MS.gene070229.t1.exon3;Parent=MS.gene070229.t1 |
chr2.2 | CDS | 54685210 | 54685328 | 54685210 | ID=cds.MS.gene070229.t1;Parent=MS.gene070229.t1 |
chr2.2 | exon | 54684697 | 54684784 | 54684697 | ID=MS.gene070229.t1.exon4;Parent=MS.gene070229.t1 |
chr2.2 | CDS | 54684697 | 54684784 | 54684697 | ID=cds.MS.gene070229.t1;Parent=MS.gene070229.t1 |
Gene Sequence |
Protein sequence |