Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070963.t1 | XP_013469740.1 | 98.6 | 212 | 3 | 0 | 1 | 212 | 2 | 213 | 6.60E-115 | 423.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070963.t1 | Q9LIL4 | 79.9 | 214 | 41 | 2 | 1 | 212 | 1 | 214 | 2.5e-94 | 346.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070963.t1 | A0A072VQS5 | 98.6 | 212 | 3 | 0 | 1 | 212 | 2 | 213 | 4.7e-115 | 423.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene070963 | MS.gene031477 | PPI |
| MS.gene070963 | MS.gene56516 | PPI |
| MS.gene070963 | MS.gene96773 | PPI |
| MS.gene070963 | MS.gene006810 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070963.t1 | MTR_1g102720 | 98.585 | 212 | 3 | 0 | 1 | 212 | 2 | 213 | 1.39e-159 | 439 |
| MS.gene070963.t1 | MTR_7g095690 | 71.292 | 209 | 55 | 2 | 9 | 212 | 3 | 211 | 2.76e-109 | 312 |
| MS.gene070963.t1 | MTR_5g098250 | 36.150 | 213 | 128 | 1 | 8 | 212 | 2 | 214 | 1.01e-39 | 135 |
| MS.gene070963.t1 | MTR_5g098250 | 36.150 | 213 | 128 | 1 | 8 | 212 | 1 | 213 | 1.02e-39 | 135 |
| MS.gene070963.t1 | MTR_3g060210 | 32.178 | 202 | 132 | 2 | 8 | 208 | 12 | 209 | 2.41e-32 | 116 |
| MS.gene070963.t1 | MTR_3g072600 | 27.778 | 144 | 101 | 2 | 65 | 205 | 70 | 213 | 1.96e-14 | 69.7 |
| MS.gene070963.t1 | MTR_8g088940 | 28.082 | 146 | 100 | 2 | 65 | 205 | 62 | 207 | 9.74e-13 | 65.1 |
| MS.gene070963.t1 | MTR_8g088980 | 28.571 | 140 | 95 | 2 | 71 | 205 | 19 | 158 | 2.27e-12 | 63.2 |
| MS.gene070963.t1 | MTR_2g007210 | 23.913 | 184 | 132 | 4 | 26 | 205 | 23 | 202 | 1.36e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070963.t1 | AT3G22845 | 79.907 | 214 | 41 | 2 | 1 | 212 | 1 | 214 | 1.39e-128 | 361 |
| MS.gene070963.t1 | AT3G22845 | 76.119 | 134 | 30 | 2 | 1 | 132 | 1 | 134 | 4.83e-71 | 214 |
| MS.gene070963.t1 | AT3G07680 | 32.512 | 203 | 136 | 1 | 10 | 212 | 7 | 208 | 6.01e-33 | 118 |
| MS.gene070963.t1 | AT1G57620 | 26.168 | 214 | 143 | 6 | 1 | 205 | 1 | 208 | 1.80e-16 | 75.1 |
| MS.gene070963.t1 | AT1G09580 | 29.586 | 169 | 111 | 3 | 45 | 205 | 45 | 213 | 1.55e-15 | 72.8 |
| MS.gene070963.t1 | AT1G21900 | 22.886 | 201 | 144 | 4 | 13 | 205 | 15 | 212 | 5.11e-12 | 63.2 |
Find 47 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAGACAAATTTCAATTTA+AGG | 0.133646 | 1.4:+79497193 | MS.gene070963:CDS |
| TACGAAGGGGATACCGTTTC+GGG | 0.172344 | 1.4:+79495935 | MS.gene070963:CDS |
| CAGATGTTCCTTTGATATCT+TGG | 0.236681 | 1.4:-79497172 | None:intergenic |
| CATGTAGAACATACCATCTT+TGG | 0.243131 | 1.4:-79497324 | None:intergenic |
| AATTTATACATTCCGTGTAC+TGG | 0.328863 | 1.4:-79497218 | None:intergenic |
| TTGATGGTTTGCAGAGCATT+TGG | 0.346873 | 1.4:+79497509 | MS.gene070963:intron |
| ACGGTCTCAGGTGTTGAGTA+TGG | 0.356849 | 1.4:-79497254 | None:intergenic |
| TTACGAAGGGGATACCGTTT+CGG | 0.363134 | 1.4:+79495934 | MS.gene070963:CDS |
| CAAGATATCAAAGGAACATC+TGG | 0.393409 | 1.4:+79497173 | MS.gene070963:CDS |
| CACTGCAAGTCATGTACATC+AGG | 0.429992 | 1.4:+79497880 | MS.gene070963:CDS |
| GTGGATGGTGTTGATGTGTT+TGG | 0.436991 | 1.4:+79495835 | MS.gene070963:CDS |
| CGTGTTATCTTCTACACTGT+TGG | 0.459757 | 1.4:+79497828 | MS.gene070963:CDS |
| ATTTATACATTCCGTGTACT+GGG | 0.462322 | 1.4:-79497217 | None:intergenic |
| TATCTGCAGGTAACATCTCC+TGG | 0.475966 | 1.4:+79497137 | MS.gene070963:intron |
| TGCCGAGCTCAGAGAGGCAT+TGG | 0.476042 | 1.4:+79497551 | MS.gene070963:CDS |
| TCACCCTGGCATTGATTTCA+CGG | 0.481893 | 1.4:+79496000 | MS.gene070963:CDS |
| GAAATCAATGCCAGGGTGAT+CGG | 0.508098 | 1.4:-79495996 | None:intergenic |
| ATGCCACTGACTTGCTGAAA+AGG | 0.511254 | 1.4:-79497905 | None:intergenic |
| CAATTTAAGGCCCCAGTACA+CGG | 0.513678 | 1.4:+79497206 | MS.gene070963:CDS |
| TTCCAATGCCTCTCTGAGCT+CGG | 0.524751 | 1.4:-79497553 | None:intergenic |
| GAGCATGACCTTGCCAAAGA+TGG | 0.530671 | 1.4:+79497311 | MS.gene070963:CDS |
| GTTTCTTTCTATATCCATGT+TGG | 0.530932 | 1.4:+79497275 | MS.gene070963:CDS |
| CGGTCTCAGGTGTTGAGTAT+GGG | 0.533708 | 1.4:-79497253 | None:intergenic |
| ATATAGAAAGAAACGGTCTC+AGG | 0.535926 | 1.4:-79497266 | None:intergenic |
| CGGAACTCCAGAAAATATCA+TGG | 0.549085 | 1.4:-79495976 | None:intergenic |
| ATGAGTATGTGCTTTACGAA+GGG | 0.567800 | 1.4:+79495921 | MS.gene070963:CDS |
| TTGGCAAGGTCATGCTCAGA+GGG | 0.569730 | 1.4:-79497305 | None:intergenic |
| GACAACAAAATTCCCCGAAA+CGG | 0.580687 | 1.4:-79495948 | None:intergenic |
| CTTACCGTGAAATCAATGCC+AGG | 0.583610 | 1.4:-79496004 | None:intergenic |
| CACTAACAGCAGCCAACAGA+AGG | 0.587296 | 1.4:-79497857 | None:intergenic |
| TGTTGGAGAGTACCTTCTGT+TGG | 0.587408 | 1.4:+79497845 | MS.gene070963:CDS |
| TCTTGGACAACATTACCTCC+AGG | 0.591309 | 1.4:-79497155 | None:intergenic |
| AATGTTGTCCAAGATATCAA+AGG | 0.595153 | 1.4:+79497164 | MS.gene070963:CDS |
| TATGAGTATGTGCTTTACGA+AGG | 0.595805 | 1.4:+79495920 | MS.gene070963:CDS |
| CAGAGGGAATATGACCAACA+TGG | 0.605526 | 1.4:-79497289 | None:intergenic |
| AACATGGATATAGAAAGAAA+CGG | 0.606163 | 1.4:-79497273 | None:intergenic |
| ACTTGAGAGCTCGAGATGCA+AGG | 0.627861 | 1.4:+79497598 | MS.gene070963:CDS |
| TTCTGGAGTTCCGATCACCC+TGG | 0.637663 | 1.4:+79495986 | MS.gene070963:CDS |
| TGAGTATGTGCTTTACGAAG+GGG | 0.643837 | 1.4:+79495922 | MS.gene070963:CDS |
| AGAACATACCATCTTTGGCA+AGG | 0.653070 | 1.4:-79497319 | None:intergenic |
| TTTATACATTCCGTGTACTG+GGG | 0.658699 | 1.4:-79497216 | None:intergenic |
| TTACCGTGAAATCAATGCCA+GGG | 0.659563 | 1.4:-79496003 | None:intergenic |
| TTTGGCAAGGTCATGCTCAG+AGG | 0.659698 | 1.4:-79497306 | None:intergenic |
| TGATGGAGGGGACTCAAACA+CGG | 0.671358 | 1.4:-79497932 | None:intergenic |
| ACGAAGGGGATACCGTTTCG+GGG | 0.686401 | 1.4:+79495936 | MS.gene070963:CDS |
| TAAAATTGCCGAGCTCAGAG+AGG | 0.738112 | 1.4:+79497545 | MS.gene070963:CDS |
| CTGCAGGTAACATCTCCTGG+AGG | 0.743481 | 1.4:+79497140 | MS.gene070963:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTTTTTTTTTTTTA+GGG | + | chr1.4:79496180-79496199 | MS.gene070963:intron | 0.0% |
| !! | ATGATTTAATGAATGATTAT+TGG | + | chr1.4:79496455-79496474 | MS.gene070963:intron | 15.0% |
| !! | TACAAAACAATATGAAAATT+CGG | - | chr1.4:79497083-79497102 | None:intergenic | 15.0% |
| !! | TTCATTATAATAACAAATGA+TGG | - | chr1.4:79497017-79497036 | None:intergenic | 15.0% |
| !!! | TATTTTATTTTCCTATGTTT+TGG | + | chr1.4:79497463-79497482 | MS.gene070963:intron | 15.0% |
| !! | AAAACTTAATCACATTTAAG+TGG | - | chr1.4:79496414-79496433 | None:intergenic | 20.0% |
| !! | AATTCAACAAATTATGAACT+GGG | - | chr1.4:79496113-79496132 | None:intergenic | 20.0% |
| !! | ACAAAACAATATGAAAATTC+GGG | - | chr1.4:79497082-79497101 | None:intergenic | 20.0% |
| !! | AGTAAGTAAGAATAAAAGAA+GGG | - | chr1.4:79497768-79497787 | None:intergenic | 20.0% |
| !! | ATTCATTAAATCATACAAAG+TGG | - | chr1.4:79496449-79496468 | None:intergenic | 20.0% |
| !! | TAATTCAACAAATTATGAAC+TGG | - | chr1.4:79496114-79496133 | None:intergenic | 20.0% |
| !! | TTGTGAACATATATGATATA+TGG | + | chr1.4:79497706-79497725 | MS.gene070963:intron | 20.0% |
| !!! | CTACTTTGAAAATTCAATTT+TGG | + | chr1.4:79497666-79497685 | MS.gene070963:intron | 20.0% |
| !!! | TTTAGTATTTTATTCCCATT+TGG | + | chr1.4:79496756-79496775 | MS.gene070963:intron | 20.0% |
| ! | AACATGGATATAGAAAGAAA+CGG | - | chr1.4:79497276-79497295 | None:intergenic | 25.0% |
| ! | AATTGATATAATGCAGCTTA+AGG | - | chr1.4:79496391-79496410 | None:intergenic | 25.0% |
| ! | ATCAAAATTGCACAGAAAAA+CGG | - | chr1.4:79496051-79496070 | None:intergenic | 25.0% |
| ! | ATTACGATTTATGAAGTCAT+TGG | + | chr1.4:79496130-79496149 | MS.gene070963:intron | 25.0% |
| ! | ATTCAACAAATTATGAACTG+GGG | - | chr1.4:79496112-79496131 | None:intergenic | 25.0% |
| ! | GAGTAAGTAAGAATAAAAGA+AGG | - | chr1.4:79497769-79497788 | None:intergenic | 25.0% |
| ! | GCTAGCTAGTATTATATTAT+AGG | + | chr1.4:79496977-79496996 | MS.gene070963:intron | 25.0% |
| ! | GGTAAAAGATAAACACTTAA+AGG | + | chr1.4:79496721-79496740 | MS.gene070963:intron | 25.0% |
| ! | GTTTACAATAATGTTACAGA+AGG | - | chr1.4:79496497-79496516 | None:intergenic | 25.0% |
| ! | TGAATATAGAATTGAGGTTT+AGG | + | chr1.4:79496288-79496307 | MS.gene070963:intron | 25.0% |
| ! | TGGAGACAAATTTCAATTTA+AGG | + | chr1.4:79497193-79497212 | MS.gene070963:CDS | 25.0% |
| ! | TGTAACTGAATATAGAATTG+AGG | + | chr1.4:79496282-79496301 | MS.gene070963:intron | 25.0% |
| ! | TTACGATTTATGAAGTCATT+GGG | + | chr1.4:79496131-79496150 | MS.gene070963:intron | 25.0% |
| !!! | CGGCAATTTTAACATTAATT+GGG | - | chr1.4:79497536-79497555 | None:intergenic | 25.0% |
| !!! | CTTTATTTTGTGCACTTAAA+TGG | + | chr1.4:79496805-79496824 | MS.gene070963:intron | 25.0% |
| !!! | GAAGTTTTTTTTATGCCTAT+AGG | + | chr1.4:79496319-79496338 | MS.gene070963:intron | 25.0% |
| !!! | TCGGCAATTTTAACATTAAT+TGG | - | chr1.4:79497537-79497556 | None:intergenic | 25.0% |
| !!! | TTTTTTTAGGGTGTTTAAGA+GGG | + | chr1.4:79496192-79496211 | MS.gene070963:intron | 25.0% |
| !!! | TTTTTTTTAGGGTGTTTAAG+AGG | + | chr1.4:79496191-79496210 | MS.gene070963:intron | 25.0% |
| AATGATTATTGGTGAATCCT+TGG | + | chr1.4:79496466-79496485 | MS.gene070963:intron | 30.0% | |
| AATGTTGTCCAAGATATCAA+AGG | + | chr1.4:79497164-79497183 | MS.gene070963:CDS | 30.0% | |
| AATTTATACATTCCGTGTAC+TGG | - | chr1.4:79497221-79497240 | None:intergenic | 30.0% | |
| AGGCATAAAAAAAACTTCCT+TGG | - | chr1.4:79496317-79496336 | None:intergenic | 30.0% | |
| AGGCTTGACTATATTGTTAT+TGG | + | chr1.4:79496892-79496911 | MS.gene070963:intron | 30.0% | |
| AGTAGAACAATGAAAGTTGA+TGG | - | chr1.4:79497651-79497670 | None:intergenic | 30.0% | |
| ATTTATACATTCCGTGTACT+GGG | - | chr1.4:79497220-79497239 | None:intergenic | 30.0% | |
| GAAAAGAAAACTACTTACTG+TGG | - | chr1.4:79497629-79497648 | None:intergenic | 30.0% | |
| GAAAATATAATCAAGCCAAC+AGG | - | chr1.4:79496369-79496388 | None:intergenic | 30.0% | |
| GCAAACCATCAAAGTTTAAA+CGG | - | chr1.4:79497501-79497520 | None:intergenic | 30.0% | |
| GTTTCTTTCTATATCCATGT+TGG | + | chr1.4:79497275-79497294 | MS.gene070963:CDS | 30.0% | |
| TACGATTTATGAAGTCATTG+GGG | + | chr1.4:79496132-79496151 | MS.gene070963:intron | 30.0% | |
| TCAATTTGATCAATCCATGT+TGG | + | chr1.4:79496608-79496627 | MS.gene070963:intron | 30.0% | |
| TTCTTGACATTTCTGATGAA+TGG | + | chr1.4:79497431-79497450 | MS.gene070963:intron | 30.0% | |
| ! | ACATTTCTTTTTCCCCATTT+CGG | + | chr1.4:79497731-79497750 | MS.gene070963:intron | 30.0% |
| ! | ACTATATTGTTATTGGCTGT+GGG | + | chr1.4:79496899-79496918 | MS.gene070963:intron | 30.0% |
| ! | CTTTTGTATATAGCAAACTG+CGG | + | chr1.4:79496849-79496868 | MS.gene070963:intron | 30.0% |
| ! | TAAGAATAAAAGAAGGGTAC+AGG | - | chr1.4:79497762-79497781 | None:intergenic | 30.0% |
| ! | TTGGTCTTTAGTTTACCTAT+AGG | - | chr1.4:79496337-79496356 | None:intergenic | 30.0% |
| ! | TTTGTATTTTGCTTTGGTGA+GGG | + | chr1.4:79496157-79496176 | MS.gene070963:intron | 30.0% |
| AAAAGAAAAACGCGAAGATG+TGG | + | chr1.4:79495816-79495835 | MS.gene070963:CDS | 35.0% | |
| ACCATCAAAGTTTAAACGGA+AGG | - | chr1.4:79497497-79497516 | None:intergenic | 35.0% | |
| AGATAGTTGAAGGTAGGAAT+AGG | + | chr1.4:79496696-79496715 | MS.gene070963:intron | 35.0% | |
| AGGCAAGATAACCAAAACAT+AGG | - | chr1.4:79497477-79497496 | None:intergenic | 35.0% | |
| ATATAGAAAGAAACGGTCTC+AGG | - | chr1.4:79497269-79497288 | None:intergenic | 35.0% | |
| ATGAGTATGTGCTTTACGAA+GGG | + | chr1.4:79495921-79495940 | MS.gene070963:CDS | 35.0% | |
| CAAGATATCAAAGGAACATC+TGG | + | chr1.4:79497173-79497192 | MS.gene070963:CDS | 35.0% | |
| CAGATGTTCCTTTGATATCT+TGG | - | chr1.4:79497175-79497194 | None:intergenic | 35.0% | |
| CATGTAGAACATACCATCTT+TGG | - | chr1.4:79497327-79497346 | None:intergenic | 35.0% | |
| CTTGAGACATAGATACATTG+AGG | + | chr1.4:79496872-79496891 | MS.gene070963:intron | 35.0% | |
| GAAATGTCAAGAAGTAAGTC+AGG | - | chr1.4:79497424-79497443 | None:intergenic | 35.0% | |
| GATAGTTGAAGGTAGGAATA+GGG | + | chr1.4:79496697-79496716 | MS.gene070963:intron | 35.0% | |
| GATCTTTGTTAGTGCGTAAT+AGG | + | chr1.4:79496579-79496598 | MS.gene070963:intron | 35.0% | |
| TATGAGTATGTGCTTTACGA+AGG | + | chr1.4:79495920-79495939 | MS.gene070963:CDS | 35.0% | |
| TGATGACTGAAGATAGTTGA+AGG | + | chr1.4:79496686-79496705 | MS.gene070963:intron | 35.0% | |
| TGCAGATAACTGCGAAAATT+AGG | - | chr1.4:79497125-79497144 | None:intergenic | 35.0% | |
| TTTATACATTCCGTGTACTG+GGG | - | chr1.4:79497219-79497238 | None:intergenic | 35.0% | |
| ! | AATAAAAGAAGGGTACAGGT+AGG | - | chr1.4:79497758-79497777 | None:intergenic | 35.0% |
| ! | GACTATATTGTTATTGGCTG+TGG | + | chr1.4:79496898-79496917 | MS.gene070963:intron | 35.0% |
| ! | GTATTTTATTCCCATTTGGC+TGG | + | chr1.4:79496760-79496779 | MS.gene070963:intron | 35.0% |
| ! | GTTTGTATTTTGCTTTGGTG+AGG | + | chr1.4:79496156-79496175 | MS.gene070963:intron | 35.0% |
| ! | TAATTTTCGCAGTTATCTGC+AGG | + | chr1.4:79497124-79497143 | MS.gene070963:intron | 35.0% |
| ! | TCGTTGACCATGATATTTTC+TGG | + | chr1.4:79495969-79495988 | MS.gene070963:CDS | 35.0% |
| AAAACCTCCTTCAAGCATAG+GGG | - | chr1.4:79496939-79496958 | None:intergenic | 40.0% | |
| AATATCAGCACCAGCCAAAT+GGG | - | chr1.4:79496773-79496792 | None:intergenic | 40.0% | |
| AATTGAGGTTTAGGTGTCCA+AGG | + | chr1.4:79496297-79496316 | MS.gene070963:intron | 40.0% | |
| ACAAAACCTCCTTCAAGCAT+AGG | - | chr1.4:79496941-79496960 | None:intergenic | 40.0% | |
| ACAAATTATGAACTGGGGCA+AGG | - | chr1.4:79496107-79496126 | None:intergenic | 40.0% | |
| AGAACATACCATCTTTGGCA+AGG | - | chr1.4:79497322-79497341 | None:intergenic | 40.0% | |
| CAAAACCTCCTTCAAGCATA+GGG | - | chr1.4:79496940-79496959 | None:intergenic | 40.0% | |
| CATTTCTGATGAATGGTCTG+AGG | + | chr1.4:79497438-79497457 | MS.gene070963:intron | 40.0% | |
| CGGAACTCCAGAAAATATCA+TGG | - | chr1.4:79495979-79495998 | None:intergenic | 40.0% | |
| CGTGTTATCTTCTACACTGT+TGG | + | chr1.4:79497828-79497847 | MS.gene070963:CDS | 40.0% | |
| GACAACAAAATTCCCCGAAA+CGG | - | chr1.4:79495951-79495970 | None:intergenic | 40.0% | |
| GACTGAAGATAGTTGAAGGT+AGG | + | chr1.4:79496690-79496709 | MS.gene070963:intron | 40.0% | |
| GCCTTCCGTTTAAACTTTGA+TGG | + | chr1.4:79497493-79497512 | MS.gene070963:intron | 40.0% | |
| GGTATGTTCTACATGAAAGC+AGG | + | chr1.4:79497332-79497351 | MS.gene070963:intron | 40.0% | |
| TGAGTATGTGCTTTACGAAG+GGG | + | chr1.4:79495922-79495941 | MS.gene070963:CDS | 40.0% | |
| TGCACAGAAAAACGGAATTG+TGG | - | chr1.4:79496043-79496062 | None:intergenic | 40.0% | |
| TTACCGTGAAATCAATGCCA+GGG | - | chr1.4:79496006-79496025 | None:intergenic | 40.0% | |
| ! | CTCGTCTAGTACTGAAACTT+TGG | + | chr1.4:79496516-79496535 | MS.gene070963:intron | 40.0% |
| ! | TTGATGGTTTGCAGAGCATT+TGG | + | chr1.4:79497509-79497528 | MS.gene070963:intron | 40.0% |
| !! | GGGGTGTTTGTATTTTGCTT+TGG | + | chr1.4:79496151-79496170 | MS.gene070963:intron | 40.0% |
| !! | GGTGCTGATATTCAAATGGA+TGG | + | chr1.4:79496781-79496800 | MS.gene070963:intron | 40.0% |
| !!! | ACAAGTGCTGACGTTCATTT+TGG | - | chr1.4:79496542-79496561 | None:intergenic | 40.0% |
| !!! | ACGTCAGCACTTGTTTTGTT+CGG | + | chr1.4:79496548-79496567 | MS.gene070963:intron | 40.0% |
| ACAAACACGCTGATCCAACA+TGG | - | chr1.4:79496625-79496644 | None:intergenic | 45.0% | |
| AGTTGAAGGTAGGAATAGGG+AGG | + | chr1.4:79496700-79496719 | MS.gene070963:intron | 45.0% | |
| CACTGCAAGTCATGTACATC+AGG | + | chr1.4:79497880-79497899 | MS.gene070963:CDS | 45.0% | |
| CAGAGGGAATATGACCAACA+TGG | - | chr1.4:79497292-79497311 | None:intergenic | 45.0% | |
| CTTACCGTGAAATCAATGCC+AGG | - | chr1.4:79496007-79496026 | None:intergenic | 45.0% | |
| GAAAAACGCGAAGATGTGGA+TGG | + | chr1.4:79495820-79495839 | MS.gene070963:CDS | 45.0% | |
| GAAATCAATGCCAGGGTGAT+CGG | - | chr1.4:79495999-79496018 | None:intergenic | 45.0% | |
| GAATATCAGCACCAGCCAAA+TGG | - | chr1.4:79496774-79496793 | None:intergenic | 45.0% | |
| GACCAAAAAGAGTTGCCTGT+TGG | + | chr1.4:79496351-79496370 | MS.gene070963:intron | 45.0% | |
| TAAAATTGCCGAGCTCAGAG+AGG | + | chr1.4:79497545-79497564 | MS.gene070963:CDS | 45.0% | |
| TATCTGCAGGTAACATCTCC+TGG | + | chr1.4:79497137-79497156 | MS.gene070963:intron | 45.0% | |
| TCTTGGACAACATTACCTCC+AGG | - | chr1.4:79497158-79497177 | None:intergenic | 45.0% | |
| TTACGAAGGGGATACCGTTT+CGG | + | chr1.4:79495934-79495953 | MS.gene070963:CDS | 45.0% | |
| TTGGTTACCCCTATGCTTGA+AGG | + | chr1.4:79496929-79496948 | MS.gene070963:intron | 45.0% | |
| ! | AGCCAACAGGCAACTCTTTT+TGG | - | chr1.4:79496356-79496375 | None:intergenic | 45.0% |
| ! | CAATTTAAGGCCCCAGTACA+CGG | + | chr1.4:79497206-79497225 | MS.gene070963:CDS | 45.0% |
| !! | ATGCCACTGACTTGCTGAAA+AGG | - | chr1.4:79497908-79497927 | None:intergenic | 45.0% |
| !! | GGCTGGTGCTGATATTCAAA+TGG | + | chr1.4:79496777-79496796 | MS.gene070963:intron | 45.0% |
| !! | GTGGATGGTGTTGATGTGTT+TGG | + | chr1.4:79495835-79495854 | MS.gene070963:CDS | 45.0% |
| !! | TCACCCTGGCATTGATTTCA+CGG | + | chr1.4:79496000-79496019 | MS.gene070963:CDS | 45.0% |
| !! | TGTTACAGAAGGTACTGCCA+AGG | - | chr1.4:79496486-79496505 | None:intergenic | 45.0% |
| !! | TGTTGGAGAGTACCTTCTGT+TGG | + | chr1.4:79497845-79497864 | MS.gene070963:CDS | 45.0% |
| !!! | GAAATTTTTTTTTTTTTTTT+AGG | + | chr1.4:79496179-79496198 | MS.gene070963:intron | 5.0% |
| ACTTGAGAGCTCGAGATGCA+AGG | + | chr1.4:79497598-79497617 | MS.gene070963:CDS | 50.0% | |
| ATTGGCTGTGGGAGTCTCAT+TGG | + | chr1.4:79496910-79496929 | MS.gene070963:intron | 50.0% | |
| CACTAACAGCAGCCAACAGA+AGG | - | chr1.4:79497860-79497879 | None:intergenic | 50.0% | |
| GAGCATGACCTTGCCAAAGA+TGG | + | chr1.4:79497311-79497330 | MS.gene070963:CDS | 50.0% | |
| GGTACAGGTAGGACCGAAAT+GGG | - | chr1.4:79497747-79497766 | None:intergenic | 50.0% | |
| GTACAGGTAGGACCGAAATG+GGG | - | chr1.4:79497746-79497765 | None:intergenic | 50.0% | |
| GTTACCCCTATGCTTGAAGG+AGG | + | chr1.4:79496932-79496951 | MS.gene070963:intron | 50.0% | |
| TACGAAGGGGATACCGTTTC+GGG | + | chr1.4:79495935-79495954 | MS.gene070963:CDS | 50.0% | |
| TTCCAATGCCTCTCTGAGCT+CGG | - | chr1.4:79497556-79497575 | None:intergenic | 50.0% | |
| TTGGCAAGGTCATGCTCAGA+GGG | - | chr1.4:79497308-79497327 | None:intergenic | 50.0% | |
| TTTGGCAAGGTCATGCTCAG+AGG | - | chr1.4:79497309-79497328 | None:intergenic | 50.0% | |
| !! | ACGGTCTCAGGTGTTGAGTA+TGG | - | chr1.4:79497257-79497276 | None:intergenic | 50.0% |
| !! | CGGTCTCAGGTGTTGAGTAT+GGG | - | chr1.4:79497256-79497275 | None:intergenic | 50.0% |
| ACGAAGGGGATACCGTTTCG+GGG | + | chr1.4:79495936-79495955 | MS.gene070963:CDS | 55.0% | |
| CTGCAGGTAACATCTCCTGG+AGG | + | chr1.4:79497140-79497159 | MS.gene070963:intron | 55.0% | |
| GGGTACAGGTAGGACCGAAA+TGG | - | chr1.4:79497748-79497767 | None:intergenic | 55.0% | |
| ! | GCGCCTTTTCAGCAAGTCAG+TGG | + | chr1.4:79497902-79497921 | MS.gene070963:CDS | 55.0% |
| !! | TTCTGGAGTTCCGATCACCC+TGG | + | chr1.4:79495986-79496005 | MS.gene070963:CDS | 55.0% |
| ! | TGCCGAGCTCAGAGAGGCAT+TGG | + | chr1.4:79497551-79497570 | MS.gene070963:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 79495812 | 79497941 | 79495812 | ID=MS.gene070963 |
| chr1.4 | mRNA | 79495812 | 79497941 | 79495812 | ID=MS.gene070963.t1;Parent=MS.gene070963 |
| chr1.4 | exon | 79495812 | 79496021 | 79495812 | ID=MS.gene070963.t1.exon1;Parent=MS.gene070963.t1 |
| chr1.4 | CDS | 79495812 | 79496021 | 79495812 | ID=cds.MS.gene070963.t1;Parent=MS.gene070963.t1 |
| chr1.4 | exon | 79497146 | 79497332 | 79497146 | ID=MS.gene070963.t1.exon2;Parent=MS.gene070963.t1 |
| chr1.4 | CDS | 79497146 | 79497332 | 79497146 | ID=cds.MS.gene070963.t1;Parent=MS.gene070963.t1 |
| chr1.4 | exon | 79497523 | 79497630 | 79497523 | ID=MS.gene070963.t1.exon3;Parent=MS.gene070963.t1 |
| chr1.4 | CDS | 79497523 | 79497630 | 79497523 | ID=cds.MS.gene070963.t1;Parent=MS.gene070963.t1 |
| chr1.4 | exon | 79497808 | 79497941 | 79497808 | ID=MS.gene070963.t1.exon4;Parent=MS.gene070963.t1 |
| chr1.4 | CDS | 79497808 | 79497941 | 79497808 | ID=cds.MS.gene070963.t1;Parent=MS.gene070963.t1 |
| Gene Sequence |
| Protein sequence |
