Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071430.t1 | ABD32840.1 | 91.9 | 334 | 16 | 2 | 1 | 323 | 22 | 355 | 2.00E-181 | 645.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071430.t1 | Q93VC9 | 73.5 | 317 | 78 | 1 | 8 | 318 | 39 | 355 | 3.3e-145 | 516.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071430.t1 | B7FJ05 | 91.9 | 334 | 16 | 2 | 1 | 323 | 24 | 357 | 1.4e-181 | 645.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene071430 | MS.gene22772 | PPI |
MS.gene071430 | MS.gene072617 | PPI |
MS.gene050819 | MS.gene071430 | PPI |
MS.gene28614 | MS.gene071430 | PPI |
MS.gene071430 | MS.gene071429 | PPI |
MS.gene072618 | MS.gene071430 | PPI |
MS.gene071430 | MS.gene072616 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071430.t1 | MTR_7g111060 | 91.916 | 334 | 16 | 2 | 1 | 323 | 24 | 357 | 0.0 | 636 |
MS.gene071430.t1 | MTR_7g111060 | 47.244 | 127 | 12 | 3 | 323 | 394 | 24 | 150 | 7.80e-21 | 93.2 |
MS.gene071430.t1 | MTR_7g111050 | 83.483 | 333 | 45 | 2 | 1 | 323 | 22 | 354 | 0.0 | 582 |
MS.gene071430.t1 | MTR_7g111050 | 91.111 | 45 | 4 | 0 | 325 | 369 | 24 | 68 | 9.40e-19 | 87.0 |
MS.gene071430.t1 | MTR_7g111050 | 82.143 | 280 | 40 | 2 | 1 | 270 | 17 | 296 | 3.59e-172 | 482 |
MS.gene071430.t1 | MTR_7g111050 | 91.111 | 45 | 4 | 0 | 325 | 369 | 19 | 63 | 4.71e-19 | 87.0 |
MS.gene071430.t1 | MTR_4g125300 | 35.193 | 233 | 121 | 6 | 69 | 296 | 133 | 340 | 3.88e-33 | 127 |
MS.gene071430.t1 | MTR_7g079230 | 29.344 | 259 | 152 | 6 | 59 | 311 | 107 | 340 | 1.98e-25 | 105 |
MS.gene071430.t1 | MTR_4g094918 | 30.385 | 260 | 151 | 11 | 45 | 296 | 96 | 333 | 5.76e-25 | 105 |
MS.gene071430.t1 | MTR_7g078600 | 30.736 | 231 | 131 | 6 | 72 | 296 | 122 | 329 | 1.16e-24 | 103 |
MS.gene071430.t1 | MTR_2g015850 | 28.629 | 248 | 151 | 6 | 53 | 296 | 130 | 355 | 5.17e-24 | 102 |
MS.gene071430.t1 | MTR_3g075390 | 29.386 | 228 | 134 | 8 | 75 | 296 | 130 | 336 | 1.68e-23 | 100 |
MS.gene071430.t1 | MTR_4g107930 | 26.761 | 284 | 173 | 9 | 26 | 296 | 75 | 336 | 2.29e-23 | 100 |
MS.gene071430.t1 | MTR_4g047610 | 26.481 | 287 | 170 | 9 | 26 | 296 | 73 | 334 | 9.03e-23 | 98.6 |
MS.gene071430.t1 | MTR_4g104370 | 27.354 | 223 | 136 | 7 | 79 | 296 | 134 | 335 | 1.16e-22 | 98.6 |
MS.gene071430.t1 | MTR_4g079470 | 26.174 | 298 | 180 | 10 | 14 | 296 | 64 | 336 | 1.43e-22 | 98.2 |
MS.gene071430.t1 | MTR_4g079770 | 26.174 | 298 | 180 | 10 | 14 | 296 | 64 | 336 | 1.95e-22 | 97.8 |
MS.gene071430.t1 | MTR_5g022560 | 27.711 | 249 | 148 | 8 | 55 | 296 | 112 | 335 | 2.10e-22 | 97.4 |
MS.gene071430.t1 | MTR_2g083930 | 28.571 | 266 | 157 | 7 | 37 | 296 | 97 | 335 | 3.87e-22 | 96.7 |
MS.gene071430.t1 | MTR_1g023210 | 31.071 | 280 | 145 | 11 | 37 | 301 | 111 | 357 | 7.87e-22 | 96.3 |
MS.gene071430.t1 | MTR_3g102220 | 28.839 | 267 | 150 | 11 | 43 | 296 | 114 | 353 | 1.30e-21 | 96.7 |
MS.gene071430.t1 | MTR_1g107550 | 28.727 | 275 | 162 | 11 | 44 | 309 | 111 | 360 | 1.73e-21 | 96.3 |
MS.gene071430.t1 | MTR_4g079800 | 25.000 | 300 | 181 | 10 | 14 | 296 | 64 | 336 | 2.12e-21 | 94.7 |
MS.gene071430.t1 | MTR_2g015920 | 30.932 | 236 | 133 | 8 | 62 | 293 | 134 | 343 | 2.41e-21 | 94.7 |
MS.gene071430.t1 | MTR_4g071060 | 30.242 | 248 | 135 | 9 | 69 | 302 | 131 | 354 | 2.67e-21 | 94.7 |
MS.gene071430.t1 | MTR_4g079440 | 28.968 | 252 | 144 | 9 | 56 | 296 | 109 | 336 | 3.65e-21 | 94.0 |
MS.gene071430.t1 | MTR_2g090890 | 27.642 | 246 | 145 | 8 | 63 | 301 | 114 | 333 | 4.56e-21 | 93.6 |
MS.gene071430.t1 | MTR_4g080360 | 29.694 | 229 | 132 | 8 | 75 | 296 | 127 | 333 | 1.12e-20 | 92.4 |
MS.gene071430.t1 | MTR_4g080700 | 30.303 | 231 | 133 | 8 | 75 | 299 | 126 | 334 | 3.01e-20 | 91.3 |
MS.gene071430.t1 | MTR_4g080730 | 28.800 | 250 | 146 | 9 | 56 | 299 | 111 | 334 | 3.35e-20 | 91.3 |
MS.gene071430.t1 | MTR_3g116080 | 28.623 | 276 | 162 | 13 | 40 | 308 | 102 | 349 | 5.83e-19 | 87.8 |
MS.gene071430.t1 | MTR_2g067900 | 29.200 | 250 | 142 | 9 | 56 | 296 | 94 | 317 | 4.27e-18 | 84.7 |
MS.gene071430.t1 | MTR_1g018840 | 29.707 | 239 | 129 | 10 | 68 | 296 | 144 | 353 | 6.44e-18 | 85.5 |
MS.gene071430.t1 | MTR_1g018840 | 29.707 | 239 | 129 | 10 | 68 | 296 | 144 | 353 | 7.19e-18 | 85.5 |
MS.gene071430.t1 | MTR_1g023810 | 28.000 | 250 | 146 | 10 | 54 | 296 | 33 | 255 | 1.77e-16 | 79.3 |
MS.gene071430.t1 | MTR_2g075830 | 29.075 | 227 | 129 | 7 | 79 | 296 | 129 | 332 | 2.08e-16 | 80.1 |
MS.gene071430.t1 | MTR_2g064475 | 28.319 | 226 | 120 | 11 | 75 | 289 | 137 | 331 | 4.11e-16 | 79.3 |
MS.gene071430.t1 | MTR_2g015930 | 29.412 | 221 | 125 | 8 | 79 | 293 | 148 | 343 | 6.06e-16 | 79.0 |
MS.gene071430.t1 | MTR_1g094135 | 27.778 | 252 | 140 | 10 | 69 | 304 | 141 | 366 | 1.58e-15 | 77.8 |
MS.gene071430.t1 | MTR_2g015840 | 40.909 | 88 | 50 | 2 | 208 | 295 | 173 | 258 | 2.39e-14 | 73.2 |
MS.gene071430.t1 | MTR_7g079130 | 41.463 | 82 | 42 | 3 | 220 | 296 | 9 | 89 | 8.46e-14 | 67.4 |
MS.gene071430.t1 | MTR_7g078580 | 36.957 | 92 | 49 | 3 | 211 | 296 | 5 | 93 | 3.68e-13 | 66.2 |
MS.gene071430.t1 | MTR_4g065077 | 27.273 | 231 | 130 | 10 | 69 | 293 | 141 | 339 | 2.41e-11 | 65.1 |
MS.gene071430.t1 | MTR_8g086470 | 27.273 | 231 | 130 | 10 | 69 | 293 | 141 | 339 | 2.66e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071430.t1 | AT1G02305 | 72.671 | 322 | 82 | 1 | 3 | 318 | 34 | 355 | 0.0 | 508 |
MS.gene071430.t1 | AT4G01610 | 72.152 | 316 | 82 | 1 | 3 | 312 | 31 | 346 | 1.04e-175 | 494 |
MS.gene071430.t1 | AT4G01610 | 71.519 | 316 | 84 | 1 | 3 | 312 | 31 | 346 | 1.90e-173 | 488 |
MS.gene071430.t1 | AT1G02300 | 63.848 | 343 | 98 | 2 | 2 | 318 | 30 | 372 | 9.76e-163 | 462 |
MS.gene071430.t1 | AT3G45310 | 34.071 | 226 | 117 | 7 | 79 | 296 | 147 | 348 | 3.28e-28 | 114 |
MS.gene071430.t1 | AT5G60360 | 32.319 | 263 | 144 | 10 | 40 | 296 | 114 | 348 | 1.69e-27 | 112 |
MS.gene071430.t1 | AT3G45310 | 33.929 | 224 | 116 | 7 | 79 | 294 | 147 | 346 | 4.54e-27 | 110 |
MS.gene071430.t1 | AT5G60360 | 32.061 | 262 | 144 | 10 | 40 | 295 | 114 | 347 | 1.40e-26 | 109 |
MS.gene071430.t1 | AT5G60360 | 31.801 | 261 | 144 | 10 | 40 | 294 | 114 | 346 | 4.28e-26 | 108 |
MS.gene071430.t1 | AT3G19400 | 29.537 | 281 | 163 | 10 | 45 | 314 | 106 | 362 | 7.18e-26 | 107 |
MS.gene071430.t1 | AT4G36880 | 28.369 | 282 | 171 | 10 | 40 | 312 | 110 | 369 | 7.87e-24 | 102 |
MS.gene071430.t1 | AT1G29080 | 32.864 | 213 | 119 | 5 | 79 | 289 | 136 | 326 | 1.51e-23 | 100 |
MS.gene071430.t1 | AT3G43960 | 29.646 | 226 | 137 | 7 | 69 | 293 | 127 | 331 | 3.13e-23 | 100 |
MS.gene071430.t1 | AT3G19390 | 29.762 | 252 | 148 | 9 | 52 | 296 | 108 | 337 | 1.30e-22 | 99.4 |
MS.gene071430.t1 | AT4G23520 | 29.927 | 274 | 156 | 12 | 32 | 296 | 95 | 341 | 2.35e-21 | 94.7 |
MS.gene071430.t1 | AT4G35350 | 28.727 | 275 | 154 | 11 | 28 | 296 | 106 | 344 | 2.58e-21 | 94.7 |
MS.gene071430.t1 | AT3G48340 | 28.302 | 265 | 153 | 11 | 38 | 296 | 102 | 335 | 3.76e-21 | 94.4 |
MS.gene071430.t1 | AT5G50260 | 26.199 | 271 | 163 | 9 | 43 | 307 | 106 | 345 | 1.82e-20 | 92.4 |
MS.gene071430.t1 | AT5G43060 | 28.358 | 268 | 157 | 11 | 37 | 296 | 105 | 345 | 2.72e-20 | 92.8 |
MS.gene071430.t1 | AT2G34080 | 30.986 | 213 | 122 | 6 | 79 | 289 | 136 | 325 | 3.15e-20 | 91.3 |
MS.gene071430.t1 | AT3G49340 | 29.108 | 213 | 125 | 6 | 79 | 289 | 133 | 321 | 7.50e-20 | 90.1 |
MS.gene071430.t1 | AT1G47128 | 26.996 | 263 | 154 | 10 | 43 | 296 | 111 | 344 | 1.03e-19 | 90.9 |
MS.gene071430.t1 | AT1G09850 | 28.571 | 259 | 151 | 10 | 45 | 296 | 94 | 325 | 1.35e-19 | 90.5 |
MS.gene071430.t1 | AT4G39090 | 28.159 | 277 | 154 | 11 | 42 | 301 | 109 | 357 | 1.46e-19 | 89.7 |
MS.gene071430.t1 | AT2G21430 | 28.421 | 285 | 160 | 12 | 40 | 307 | 103 | 360 | 4.36e-19 | 88.2 |
MS.gene071430.t1 | AT1G20850 | 28.195 | 266 | 156 | 12 | 40 | 296 | 106 | 345 | 5.46e-19 | 87.8 |
MS.gene071430.t1 | AT2G27420 | 29.907 | 214 | 128 | 7 | 79 | 289 | 134 | 328 | 1.46e-18 | 86.7 |
MS.gene071430.t1 | AT3G48350 | 26.357 | 258 | 154 | 10 | 68 | 313 | 125 | 358 | 1.60e-18 | 86.7 |
MS.gene071430.t1 | AT4G16190 | 28.159 | 277 | 156 | 10 | 42 | 301 | 113 | 363 | 2.54e-18 | 86.3 |
MS.gene071430.t1 | AT5G45890 | 26.032 | 315 | 184 | 11 | 4 | 296 | 50 | 337 | 7.11e-18 | 84.7 |
MS.gene071430.t1 | AT1G29090 | 30.374 | 214 | 123 | 6 | 79 | 289 | 145 | 335 | 7.25e-18 | 84.7 |
MS.gene071430.t1 | AT4G11310 | 28.992 | 238 | 129 | 9 | 69 | 296 | 137 | 344 | 9.94e-18 | 84.3 |
MS.gene071430.t1 | AT1G06260 | 28.125 | 224 | 133 | 7 | 79 | 296 | 133 | 334 | 1.18e-17 | 84.0 |
MS.gene071430.t1 | AT4G11320 | 27.731 | 238 | 114 | 8 | 69 | 289 | 144 | 340 | 1.39e-16 | 80.9 |
MS.gene071430.t1 | AT4G11320 | 27.731 | 238 | 114 | 8 | 69 | 289 | 144 | 340 | 1.39e-16 | 80.9 |
MS.gene071430.t1 | AT3G54940 | 28.000 | 250 | 138 | 11 | 69 | 302 | 137 | 360 | 1.70e-16 | 80.9 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
50563 | gene | 3533 | 13291 | 3533 | ID=MS.gene071430 |
50563 | mRNA | 3533 | 13291 | 3533 | ID=MS.gene071430.t1;Parent=MS.gene071430 |
50563 | exon | 3533 | 3580 | 3533 | ID=MS.gene071430.t1.exon1;Parent=MS.gene071430.t1 |
50563 | CDS | 3533 | 3580 | 3533 | ID=cds.MS.gene071430.t1;Parent=MS.gene071430.t1 |
50563 | exon | 3690 | 3752 | 3690 | ID=MS.gene071430.t1.exon2;Parent=MS.gene071430.t1 |
50563 | CDS | 3690 | 3752 | 3690 | ID=cds.MS.gene071430.t1;Parent=MS.gene071430.t1 |
50563 | exon | 4991 | 5147 | 4991 | ID=MS.gene071430.t1.exon3;Parent=MS.gene071430.t1 |
50563 | CDS | 4991 | 5147 | 4991 | ID=cds.MS.gene071430.t1;Parent=MS.gene071430.t1 |
50563 | exon | 5269 | 5273 | 5269 | ID=MS.gene071430.t1.exon4;Parent=MS.gene071430.t1 |
50563 | CDS | 5269 | 5273 | 5269 | ID=cds.MS.gene071430.t1;Parent=MS.gene071430.t1 |
50563 | exon | 5382 | 5456 | 5382 | ID=MS.gene071430.t1.exon5;Parent=MS.gene071430.t1 |
50563 | CDS | 5382 | 5456 | 5382 | ID=cds.MS.gene071430.t1;Parent=MS.gene071430.t1 |
50563 | exon | 5863 | 5988 | 5863 | ID=MS.gene071430.t1.exon6;Parent=MS.gene071430.t1 |
50563 | CDS | 5863 | 5988 | 5863 | ID=cds.MS.gene071430.t1;Parent=MS.gene071430.t1 |
50563 | exon | 6074 | 6292 | 6074 | ID=MS.gene071430.t1.exon7;Parent=MS.gene071430.t1 |
50563 | CDS | 6074 | 6292 | 6074 | ID=cds.MS.gene071430.t1;Parent=MS.gene071430.t1 |
50563 | exon | 7848 | 7961 | 7848 | ID=MS.gene071430.t1.exon8;Parent=MS.gene071430.t1 |
50563 | CDS | 7848 | 7961 | 7848 | ID=cds.MS.gene071430.t1;Parent=MS.gene071430.t1 |
50563 | exon | 8064 | 8099 | 8064 | ID=MS.gene071430.t1.exon9;Parent=MS.gene071430.t1 |
50563 | CDS | 8064 | 8099 | 8064 | ID=cds.MS.gene071430.t1;Parent=MS.gene071430.t1 |
50563 | exon | 8195 | 8317 | 8195 | ID=MS.gene071430.t1.exon10;Parent=MS.gene071430.t1 |
50563 | CDS | 8195 | 8317 | 8195 | ID=cds.MS.gene071430.t1;Parent=MS.gene071430.t1 |
50563 | exon | 11341 | 11400 | 11341 | ID=MS.gene071430.t1.exon11;Parent=MS.gene071430.t1 |
50563 | CDS | 11341 | 11400 | 11341 | ID=cds.MS.gene071430.t1;Parent=MS.gene071430.t1 |
50563 | exon | 11500 | 11580 | 11500 | ID=MS.gene071430.t1.exon12;Parent=MS.gene071430.t1 |
50563 | CDS | 11500 | 11580 | 11500 | ID=cds.MS.gene071430.t1;Parent=MS.gene071430.t1 |
50563 | exon | 13217 | 13291 | 13217 | ID=MS.gene071430.t1.exon13;Parent=MS.gene071430.t1 |
50563 | CDS | 13217 | 13291 | 13217 | ID=cds.MS.gene071430.t1;Parent=MS.gene071430.t1 |
Gene Sequence |
Protein sequence |