Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072320.t1 | XP_013449629.1 | 95 | 422 | 20 | 1 | 1 | 421 | 24 | 445 | 3.10E-233 | 817.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072320.t1 | P35336 | 66.0 | 371 | 122 | 4 | 50 | 419 | 88 | 455 | 7.2e-138 | 491.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072320.t1 | A0A072U1T5 | 95.0 | 422 | 20 | 1 | 1 | 421 | 24 | 445 | 2.2e-233 | 817.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050563 | MS.gene072320 | 0.806524 | 7.89E-50 | -1.69E-46 |
| MS.gene052142 | MS.gene072320 | 0.813413 | 2.59E-51 | -1.69E-46 |
| MS.gene052187 | MS.gene072320 | 0.806032 | 1.00E-49 | -1.69E-46 |
| MS.gene052456 | MS.gene072320 | 0.801229 | 9.94E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene072320 | 0.81546 | 9.14E-52 | -1.69E-46 |
| MS.gene055359 | MS.gene072320 | 0.833643 | 4.74E-56 | -1.69E-46 |
| MS.gene05578 | MS.gene072320 | 0.801146 | 1.03E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 86 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTACAACACATTGCTAATT+TGG | 0.092906 | 7.2:-17256639 | None:intergenic |
| GTGAATGGAGCTAAGATTTC+TGG | 0.145479 | 7.2:+17255686 | MS.gene072320:CDS |
| GTAATTCTGGTTGATTATTA+TGG | 0.171350 | 7.2:-17256450 | None:intergenic |
| TCGATTAATGTTAAAGCTTC+TGG | 0.232871 | 7.2:+17255169 | MS.gene072320:CDS |
| TGGGAAGTAGTATGTGATTC+AGG | 0.267912 | 7.2:+17254368 | MS.gene072320:CDS |
| AAATTTAATTGTCAGATATC+TGG | 0.291470 | 7.2:+17254591 | MS.gene072320:intron |
| GTTCAGCAACTATTAGTTAA+TGG | 0.294863 | 7.2:+17254684 | MS.gene072320:CDS |
| AAATCCAGGGACATTGTTTC+GGG | 0.300030 | 7.2:+17255656 | MS.gene072320:CDS |
| TAATTCTGGTTGATTATTAT+GGG | 0.314464 | 7.2:-17256449 | None:intergenic |
| ATTGTTAATGTCAAAGATTA+TGG | 0.321747 | 7.2:+17253992 | MS.gene072320:CDS |
| GGTTAAATGCAGGGAGGTTC+AGG | 0.324538 | 7.2:+17256374 | MS.gene072320:intron |
| AAAATCCAGGGACATTGTTT+CGG | 0.353625 | 7.2:+17255655 | MS.gene072320:CDS |
| CAAATCTAACATATCAGTTC+AGG | 0.357768 | 7.2:+17254460 | MS.gene072320:CDS |
| TATCTCAGTATTGGAAGCTT+GGG | 0.384966 | 7.2:+17255626 | MS.gene072320:intron |
| CAAATTTCAGAACATTGAAA+TGG | 0.394222 | 7.2:+17256412 | MS.gene072320:CDS |
| ACAAATCCACCTTTCATTCC+AGG | 0.397276 | 7.2:+17255144 | MS.gene072320:CDS |
| AAGATTTCTGGAACTACAAA+TGG | 0.398447 | 7.2:+17255698 | MS.gene072320:CDS |
| GTGGACCAGGCCATGGCATC+AGG | 0.404513 | 7.2:+17255501 | MS.gene072320:CDS |
| GTCAAAGATTATGGAGCTAA+AGG | 0.414898 | 7.2:+17254001 | MS.gene072320:CDS |
| CAAGGACCAGAGAATCTGAT+TGG | 0.415737 | 7.2:-17254437 | None:intergenic |
| AAAATCTCTAGCTCTATCAT+AGG | 0.416238 | 7.2:+17255262 | MS.gene072320:CDS |
| TCAAAGATTATGGAGCTAAA+GGG | 0.422051 | 7.2:+17254002 | MS.gene072320:CDS |
| GATTGTATATCAATTGTAGA+TGG | 0.423588 | 7.2:+17255446 | MS.gene072320:CDS |
| ATATGAATTCCATCGGTGTT+AGG | 0.428068 | 7.2:-17255220 | None:intergenic |
| GGTCTCAACGTGTCATCGCC+AGG | 0.433178 | 7.2:+17255190 | MS.gene072320:CDS |
| ATATCTCAGTATTGGAAGCT+TGG | 0.439364 | 7.2:+17255625 | MS.gene072320:intron |
| TTCAGGCATTCAAGAAGGCT+TGG | 0.439440 | 7.2:+17254348 | MS.gene072320:intron |
| GATGCCATGGCCTGGTCCAC+AGG | 0.440698 | 7.2:-17255498 | None:intergenic |
| CTCAAACCAATCAGATTCTC+TGG | 0.441568 | 7.2:+17254431 | MS.gene072320:CDS |
| GTGTTGTACCAGAATATAAC+AGG | 0.441587 | 7.2:+17256652 | MS.gene072320:CDS |
| TACATTATTATTCAAGAACT+TGG | 0.444587 | 7.2:+17253907 | MS.gene072320:CDS |
| TAATGTATCACCATCATCAT+AGG | 0.445190 | 7.2:-17253891 | None:intergenic |
| TCTAGCTCTATCATAGGAAC+TGG | 0.455625 | 7.2:+17255268 | MS.gene072320:CDS |
| CTTTAACATTAATCGAATCC+TGG | 0.456787 | 7.2:-17255162 | None:intergenic |
| CTGGTTGATTATTATGGGGT+TGG | 0.457178 | 7.2:-17256444 | None:intergenic |
| GTTTCGGGAGTATTAGTGAA+TGG | 0.461707 | 7.2:+17255671 | MS.gene072320:CDS |
| TCAGGCATTCAAGAAGGCTT+GGG | 0.482423 | 7.2:+17254349 | MS.gene072320:intron |
| TTGTTGCATAAAGCCTTAGC+AGG | 0.490400 | 7.2:-17256778 | None:intergenic |
| AACTACCTGATGCCATGGCC+TGG | 0.490944 | 7.2:-17255506 | None:intergenic |
| TACTCCCGAAACAATGTCCC+TGG | 0.495411 | 7.2:-17255660 | None:intergenic |
| TGATCTTCACTGTAATCTGA+TGG | 0.496203 | 7.2:-17254636 | None:intergenic |
| AGCAACTATTAGTTAATGGT+GGG | 0.503518 | 7.2:+17254688 | MS.gene072320:CDS |
| ATACTCTTAATATGTGAAGA+AGG | 0.514121 | 7.2:+17256751 | MS.gene072320:CDS |
| CAGCAACTATTAGTTAATGG+TGG | 0.520571 | 7.2:+17254687 | MS.gene072320:CDS |
| GGTGGCAAAACTCATGCAAA+AGG | 0.522181 | 7.2:+17254739 | MS.gene072320:CDS |
| TAATATTCAGGCATTCAAGA+AGG | 0.522536 | 7.2:+17254343 | MS.gene072320:intron |
| AGTAGATAATTATAATCTTG+AGG | 0.527229 | 7.2:-17254410 | None:intergenic |
| TAATCGAATCCTGGAATGAA+AGG | 0.538023 | 7.2:-17255153 | None:intergenic |
| GGGAAGTAGTATGTGATTCA+GGG | 0.539599 | 7.2:+17254369 | MS.gene072320:CDS |
| TCTAACATTTGATAGTTGCA+AGG | 0.555087 | 7.2:+17255084 | MS.gene072320:CDS |
| GATTATGGAGCTAAAGGGGA+TGG | 0.559266 | 7.2:+17254007 | MS.gene072320:CDS |
| CAACGTATGTAGTAATAAGC+GGG | 0.563528 | 7.2:-17253856 | None:intergenic |
| AATTCTGGTTGATTATTATG+GGG | 0.564037 | 7.2:-17256448 | None:intergenic |
| AGTTAGAATTAAGACTTGGC+CGG | 0.569890 | 7.2:+17255721 | MS.gene072320:CDS |
| ACAGACATTACCTGTGGACC+AGG | 0.570239 | 7.2:+17255488 | MS.gene072320:CDS |
| ACTGATATGTTAGATTTGCA+AGG | 0.570724 | 7.2:-17254455 | None:intergenic |
| GCAACTATTAGTTAATGGTG+GGG | 0.572896 | 7.2:+17254689 | MS.gene072320:CDS |
| TCGATGGAAAAGGAAACATA+TGG | 0.573459 | 7.2:+17254718 | MS.gene072320:CDS |
| GATTCACCTTCCTATGATGA+TGG | 0.579625 | 7.2:+17253881 | MS.gene072320:CDS |
| ATCTCAGTATTGGAAGCTTG+GGG | 0.581140 | 7.2:+17255627 | MS.gene072320:intron |
| GCCTTGCAAGGATGCTCCAA+CGG | 0.581239 | 7.2:+17254900 | MS.gene072320:intron |
| CAAAGATTATGGAGCTAAAG+GGG | 0.581495 | 7.2:+17254003 | MS.gene072320:CDS |
| AATGTTCAATTGTCTTACAC+AGG | 0.586671 | 7.2:+17256799 | MS.gene072320:CDS |
| ACCGTTGGAGCATCCTTGCA+AGG | 0.589497 | 7.2:-17254901 | None:intergenic |
| ATTACCTGTGGACCAGGCCA+TGG | 0.589996 | 7.2:+17255494 | MS.gene072320:CDS |
| CAACTATTAGTTAATGGTGG+GGG | 0.593365 | 7.2:+17254690 | MS.gene072320:CDS |
| TGAAGAAGGAGAACCTGCTA+AGG | 0.593731 | 7.2:+17256765 | MS.gene072320:CDS |
| TTGCAATAGCAACTTGCAAG+AGG | 0.593871 | 7.2:+17253832 | None:intergenic |
| TCGAATCCTGGAATGAAAGG+TGG | 0.594827 | 7.2:-17255150 | None:intergenic |
| TGGTCCACAGGTAATGTCTG+TGG | 0.601877 | 7.2:-17255486 | None:intergenic |
| GTCTCAACGTGTCATCGCCA+GGG | 0.608495 | 7.2:+17255191 | MS.gene072320:CDS |
| AAGTTAACTACCTGATGCCA+TGG | 0.609029 | 7.2:-17255511 | None:intergenic |
| GGGAATAGTCCTAACACCGA+TGG | 0.616454 | 7.2:+17255211 | MS.gene072320:CDS |
| ATGGAGTTAGAATTAAGACT+TGG | 0.618304 | 7.2:+17255717 | MS.gene072320:CDS |
| ATTGGTGATATGAATTCCAT+CGG | 0.620342 | 7.2:-17255227 | None:intergenic |
| ACAGTGAAGATCAAAGACAT+TGG | 0.636413 | 7.2:+17254646 | MS.gene072320:CDS |
| TCAACGTATGTAGTAATAAG+CGG | 0.641060 | 7.2:-17253857 | None:intergenic |
| TCGGTGTTAGGACTATTCCC+TGG | 0.643264 | 7.2:-17255208 | None:intergenic |
| GTATCACCATCATCATAGGA+AGG | 0.644782 | 7.2:-17253887 | None:intergenic |
| TGTGTTTATGCAGGACTCTG+CGG | 0.649850 | 7.2:+17256615 | MS.gene072320:intron |
| TATTTCTATGAGTTGCAGCG+TGG | 0.662487 | 7.2:-17256832 | None:intergenic |
| TCTCAGTATTGGAAGCTTGG+GGG | 0.679058 | 7.2:+17255628 | MS.gene072320:intron |
| TGGTCATACTGATGACACAC+AGG | 0.686944 | 7.2:+17254027 | MS.gene072320:CDS |
| ATGGAAAAGGAAACATATGG+TGG | 0.687596 | 7.2:+17254721 | MS.gene072320:CDS |
| GAAGCCACAGACATTACCTG+TGG | 0.698968 | 7.2:+17255482 | MS.gene072320:CDS |
| GAGAACGTGAAGTGACACCA+TGG | 0.725055 | 7.2:-17253964 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAACAAAAAATATCT+TGG | - | chr7.2:17254107-17254126 | None:intergenic | 10.0% |
| !! | TTATAATTTACTTAAAAATG+TGG | - | chr7.2:17254548-17254567 | None:intergenic | 10.0% |
| !!! | AAATTAAAGTTTAAAATTAC+CGG | - | chr7.2:17255743-17255762 | None:intergenic | 10.0% |
| !!! | TCTTATTTGATTAAATATAA+AGG | - | chr7.2:17256329-17256348 | None:intergenic | 10.0% |
| !! | AAAAAAACCATGTAAAAAAA+TGG | + | chr7.2:17256484-17256503 | MS.gene072320:CDS | 15.0% |
| !! | ATAATTAGTTAATTAATCAC+TGG | - | chr7.2:17254507-17254526 | None:intergenic | 15.0% |
| !! | CATACAAAATATTAAATTAG+TGG | - | chr7.2:17254224-17254243 | None:intergenic | 15.0% |
| !! | TATATATTTATAAAAGATGG+AGG | - | chr7.2:17255872-17255891 | None:intergenic | 15.0% |
| !!! | AACTTAAATTTTCCTATAAT+TGG | + | chr7.2:17254306-17254325 | MS.gene072320:intron | 15.0% |
| !!! | AATAAGACATAAATTTTCTT+TGG | + | chr7.2:17256342-17256361 | MS.gene072320:intron | 15.0% |
| !!! | AATTGACTTGATTAAAATAT+TGG | - | chr7.2:17254798-17254817 | None:intergenic | 15.0% |
| !!! | ATTGACTTGATTAAAATATT+GGG | - | chr7.2:17254797-17254816 | None:intergenic | 15.0% |
| !!! | CTAACTAATTTTATTTTTGT+AGG | + | chr7.2:17255060-17255079 | MS.gene072320:intron | 15.0% |
| !!! | GAAATATTTTATTGATTTAG+TGG | - | chr7.2:17256108-17256127 | None:intergenic | 15.0% |
| !!! | TAATTTACCATTTTTTTACA+TGG | - | chr7.2:17256494-17256513 | None:intergenic | 15.0% |
| !!! | TCCATCTTTTATAAATATAT+AGG | + | chr7.2:17255871-17255890 | MS.gene072320:intron | 15.0% |
| !!! | TGTAAACATAAGATTTTTTA+TGG | - | chr7.2:17256051-17256070 | None:intergenic | 15.0% |
| !!! | TTGTTTTCAATTATAACAAT+GGG | + | chr7.2:17254134-17254153 | MS.gene072320:intron | 15.0% |
| !!! | TTTGTTTTCAATTATAACAA+TGG | + | chr7.2:17254133-17254152 | MS.gene072320:intron | 15.0% |
| !! | AAATTTAATTGTCAGATATC+TGG | + | chr7.2:17254591-17254610 | MS.gene072320:intron | 20.0% |
| !! | AACAATACATAATATATGCA+AGG | + | chr7.2:17255808-17255827 | MS.gene072320:intron | 20.0% |
| !! | AGTAGATAATTATAATCTTG+AGG | - | chr7.2:17254413-17254432 | None:intergenic | 20.0% |
| !! | ATTAAACACAATAATAGTGT+TGG | + | chr7.2:17256195-17256214 | MS.gene072320:intron | 20.0% |
| !! | ATTGTTAATGTCAAAGATTA+TGG | + | chr7.2:17253992-17254011 | MS.gene072320:CDS | 20.0% |
| !! | CTCAGTTGTTAAATTTAAAT+TGG | + | chr7.2:17254979-17254998 | MS.gene072320:intron | 20.0% |
| !! | GCCTATATATTTATAAAAGA+TGG | - | chr7.2:17255875-17255894 | None:intergenic | 20.0% |
| !! | TACACATAAATGAGTTTAAT+GGG | + | chr7.2:17256067-17256086 | MS.gene072320:intron | 20.0% |
| !! | TACATTATTATTCAAGAACT+TGG | + | chr7.2:17253907-17253926 | MS.gene072320:CDS | 20.0% |
| !! | TGATTTATATATCTCAGTAT+TGG | + | chr7.2:17255617-17255636 | MS.gene072320:intron | 20.0% |
| !! | TGTTATAGATTTCATAATCA+AGG | + | chr7.2:17255009-17255028 | MS.gene072320:intron | 20.0% |
| !! | TTACACATAAATGAGTTTAA+TGG | + | chr7.2:17256066-17256085 | MS.gene072320:intron | 20.0% |
| !! | TTGAATTCTTTATTGATCAT+AGG | + | chr7.2:17256290-17256309 | MS.gene072320:intron | 20.0% |
| !!! | ACATATTTAAACTCGTTTTA+AGG | + | chr7.2:17255912-17255931 | MS.gene072320:intron | 20.0% |
| !!! | ATTTAAAATAAGTGCATGTT+TGG | + | chr7.2:17255993-17256012 | MS.gene072320:intron | 20.0% |
| !!! | CAAAAAAAAGTACAAGAATT+AGG | + | chr7.2:17255325-17255344 | MS.gene072320:intron | 20.0% |
| !!! | TAAGAAAACCAAATTAGTTT+AGG | - | chr7.2:17254247-17254266 | None:intergenic | 20.0% |
| !!! | TAATTCTGGTTGATTATTAT+GGG | - | chr7.2:17256452-17256471 | None:intergenic | 20.0% |
| !!! | TCATAATCAAGGATTTTAAT+TGG | + | chr7.2:17255020-17255039 | MS.gene072320:intron | 20.0% |
| ! | AAAAATGTGGTGCTTAAAAA+CGG | - | chr7.2:17254535-17254554 | None:intergenic | 25.0% |
| ! | AATATAAAGGTGAGTAAGTT+AGG | - | chr7.2:17256316-17256335 | None:intergenic | 25.0% |
| ! | ATACTCTTAATATGTGAAGA+AGG | + | chr7.2:17256751-17256770 | MS.gene072320:CDS | 25.0% |
| ! | CAAATTTCAGAACATTGAAA+TGG | + | chr7.2:17256412-17256431 | MS.gene072320:CDS | 25.0% |
| ! | CTAAATTGTCGAGAAAATTT+AGG | - | chr7.2:17254944-17254963 | None:intergenic | 25.0% |
| ! | GATAGATTAGTATATCAAAG+TGG | - | chr7.2:17255945-17255964 | None:intergenic | 25.0% |
| ! | GATTGTATATCAATTGTAGA+TGG | + | chr7.2:17255446-17255465 | MS.gene072320:CDS | 25.0% |
| ! | TACATAATATATGCAAGGTT+CGG | + | chr7.2:17255813-17255832 | MS.gene072320:intron | 25.0% |
| ! | TTTGTATGCCTAAACTAATT+TGG | + | chr7.2:17254236-17254255 | MS.gene072320:intron | 25.0% |
| !! | AATTCTGGTTGATTATTATG+GGG | - | chr7.2:17256451-17256470 | None:intergenic | 25.0% |
| !! | GAGAAAAAGCATAAAAAAGT+TGG | - | chr7.2:17254870-17254889 | None:intergenic | 25.0% |
| !! | GTAATTCTGGTTGATTATTA+TGG | - | chr7.2:17256453-17256472 | None:intergenic | 25.0% |
| !! | TTATGATTTTGTGTTTATGC+AGG | + | chr7.2:17256606-17256625 | MS.gene072320:intron | 25.0% |
| !!! | ATAAATTTTCTTTGGTCTTG+CGG | + | chr7.2:17256350-17256369 | MS.gene072320:intron | 25.0% |
| AATGTTCAATTGTCTTACAC+AGG | + | chr7.2:17256799-17256818 | MS.gene072320:CDS | 30.0% | |
| ACATAATATATGCAAGGTTC+GGG | + | chr7.2:17255814-17255833 | MS.gene072320:intron | 30.0% | |
| ACTGATATGTTAGATTTGCA+AGG | - | chr7.2:17254458-17254477 | None:intergenic | 30.0% | |
| AGATTAGTATATCAAAGTGG+TGG | - | chr7.2:17255942-17255961 | None:intergenic | 30.0% | |
| AGCAACTATTAGTTAATGGT+GGG | + | chr7.2:17254688-17254707 | MS.gene072320:CDS | 30.0% | |
| ATGGAGTTAGAATTAAGACT+TGG | + | chr7.2:17255717-17255736 | MS.gene072320:CDS | 30.0% | |
| ATGTGGGACATTTAATATTC+AGG | + | chr7.2:17254331-17254350 | MS.gene072320:intron | 30.0% | |
| CAAATCTAACATATCAGTTC+AGG | + | chr7.2:17254460-17254479 | MS.gene072320:CDS | 30.0% | |
| CTTTAACATTAATCGAATCC+TGG | - | chr7.2:17255165-17255184 | None:intergenic | 30.0% | |
| GTAAAGTAAATAGAGCAAAG+TGG | + | chr7.2:17256165-17256184 | MS.gene072320:intron | 30.0% | |
| GTAAGTAGCTATCTATATGT+TGG | - | chr7.2:17256579-17256598 | None:intergenic | 30.0% | |
| GTTCAGCAACTATTAGTTAA+TGG | + | chr7.2:17254684-17254703 | MS.gene072320:CDS | 30.0% | |
| TAATATTCAGGCATTCAAGA+AGG | + | chr7.2:17254343-17254362 | MS.gene072320:intron | 30.0% | |
| TAATGTATCACCATCATCAT+AGG | - | chr7.2:17253894-17253913 | None:intergenic | 30.0% | |
| TCAAAGATTATGGAGCTAAA+GGG | + | chr7.2:17254002-17254021 | MS.gene072320:CDS | 30.0% | |
| TCAACGTATGTAGTAATAAG+CGG | - | chr7.2:17253860-17253879 | None:intergenic | 30.0% | |
| TCGATTAATGTTAAAGCTTC+TGG | + | chr7.2:17255169-17255188 | MS.gene072320:CDS | 30.0% | |
| TGAATATTAAATGTCCCACA+TGG | - | chr7.2:17254332-17254351 | None:intergenic | 30.0% | |
| ! | AATAGTGTTGGATCAATAGA+TGG | + | chr7.2:17256207-17256226 | MS.gene072320:intron | 30.0% |
| ! | ATTGGTGATATGAATTCCAT+CGG | - | chr7.2:17255230-17255249 | None:intergenic | 30.0% |
| ! | TCTAACATTTGATAGTTGCA+AGG | + | chr7.2:17255084-17255103 | MS.gene072320:CDS | 30.0% |
| ! | TTTTCTTGTCACAGTAATTC+TGG | - | chr7.2:17256466-17256485 | None:intergenic | 30.0% |
| !! | AAAATCTCTAGCTCTATCAT+AGG | + | chr7.2:17255262-17255281 | MS.gene072320:CDS | 30.0% |
| !! | AAGATTTCTGGAACTACAAA+TGG | + | chr7.2:17255698-17255717 | MS.gene072320:CDS | 30.0% |
| !! | AGCTAGAGATTTTGATGTTT+TGG | - | chr7.2:17255255-17255274 | None:intergenic | 30.0% |
| !! | GATTTTGATGTTTTGGGTAT+TGG | - | chr7.2:17255248-17255267 | None:intergenic | 30.0% |
| !! | GCTAGAGATTTTGATGTTTT+GGG | - | chr7.2:17255254-17255273 | None:intergenic | 30.0% |
| !!! | CTTTTCCTGTAATTTGTTTC+AGG | + | chr7.2:17255419-17255438 | MS.gene072320:intron | 30.0% |
| AAAATCCAGGGACATTGTTT+CGG | + | chr7.2:17255655-17255674 | MS.gene072320:CDS | 35.0% | |
| ACAACTGAGATTTGACTGAA+TGG | - | chr7.2:17254968-17254987 | None:intergenic | 35.0% | |
| ACACTACAAGTACACTATAC+TGG | + | chr7.2:17256542-17256561 | MS.gene072320:intron | 35.0% | |
| ACAGTGAAGATCAAAGACAT+TGG | + | chr7.2:17254646-17254665 | MS.gene072320:CDS | 35.0% | |
| AGTTAGAATTAAGACTTGGC+CGG | + | chr7.2:17255721-17255740 | MS.gene072320:CDS | 35.0% | |
| ATGGAAAAGGAAACATATGG+TGG | + | chr7.2:17254721-17254740 | MS.gene072320:CDS | 35.0% | |
| CAAAGATTATGGAGCTAAAG+GGG | + | chr7.2:17254003-17254022 | MS.gene072320:CDS | 35.0% | |
| CAACGTATGTAGTAATAAGC+GGG | - | chr7.2:17253859-17253878 | None:intergenic | 35.0% | |
| CAACTATTAGTTAATGGTGG+GGG | + | chr7.2:17254690-17254709 | MS.gene072320:CDS | 35.0% | |
| CAGCAACTATTAGTTAATGG+TGG | + | chr7.2:17254687-17254706 | MS.gene072320:CDS | 35.0% | |
| CAGTGAAAAATTTCCATGCA+AGG | + | chr7.2:17256711-17256730 | MS.gene072320:CDS | 35.0% | |
| CATAATATATGCAAGGTTCG+GGG | + | chr7.2:17255815-17255834 | MS.gene072320:intron | 35.0% | |
| GCAACTATTAGTTAATGGTG+GGG | + | chr7.2:17254689-17254708 | MS.gene072320:CDS | 35.0% | |
| GGTACAACACATTGCTAATT+TGG | - | chr7.2:17256642-17256661 | None:intergenic | 35.0% | |
| GTCAAAGATTATGGAGCTAA+AGG | + | chr7.2:17254001-17254020 | MS.gene072320:CDS | 35.0% | |
| GTGTTGTACCAGAATATAAC+AGG | + | chr7.2:17256652-17256671 | MS.gene072320:CDS | 35.0% | |
| TAATCGAATCCTGGAATGAA+AGG | - | chr7.2:17255156-17255175 | None:intergenic | 35.0% | |
| TCGATGGAAAAGGAAACATA+TGG | + | chr7.2:17254718-17254737 | MS.gene072320:CDS | 35.0% | |
| TGATCTTCACTGTAATCTGA+TGG | - | chr7.2:17254639-17254658 | None:intergenic | 35.0% | |
| TTTCCTATAATTGGCCATGT+GGG | + | chr7.2:17254315-17254334 | MS.gene072320:intron | 35.0% | |
| ! | ATATCTCAGTATTGGAAGCT+TGG | + | chr7.2:17255625-17255644 | MS.gene072320:intron | 35.0% |
| ! | ATATGAATTCCATCGGTGTT+AGG | - | chr7.2:17255223-17255242 | None:intergenic | 35.0% |
| ! | CACTTTTGCCTGTTATATTC+TGG | - | chr7.2:17256663-17256682 | None:intergenic | 35.0% |
| ! | TATCTCAGTATTGGAAGCTT+GGG | + | chr7.2:17255626-17255645 | MS.gene072320:intron | 35.0% |
| ! | TATGTTTCCTTTTCCATCGA+TGG | - | chr7.2:17254718-17254737 | None:intergenic | 35.0% |
| ! | TGCATTTTTATCTCCTTGCA+TGG | - | chr7.2:17256727-17256746 | None:intergenic | 35.0% |
| ! | TTTTCCTATAATTGGCCATG+TGG | + | chr7.2:17254314-17254333 | MS.gene072320:intron | 35.0% |
| AAATCCAGGGACATTGTTTC+GGG | + | chr7.2:17255656-17255675 | MS.gene072320:CDS | 40.0% | |
| AAGTTAACTACCTGATGCCA+TGG | - | chr7.2:17255514-17255533 | None:intergenic | 40.0% | |
| ACAAATCCACCTTTCATTCC+AGG | + | chr7.2:17255144-17255163 | MS.gene072320:CDS | 40.0% | |
| ATGAGTTTAATGGGATCCTC+TGG | + | chr7.2:17256076-17256095 | MS.gene072320:intron | 40.0% | |
| CGTCACCTGAAACAAATTAC+AGG | - | chr7.2:17255427-17255446 | None:intergenic | 40.0% | |
| CTCAAACCAATCAGATTCTC+TGG | + | chr7.2:17254431-17254450 | MS.gene072320:CDS | 40.0% | |
| CTGGTTGATTATTATGGGGT+TGG | - | chr7.2:17256447-17256466 | None:intergenic | 40.0% | |
| GAGCTATGTATACATACCGT+TGG | - | chr7.2:17254919-17254938 | None:intergenic | 40.0% | |
| GATTCACCTTCCTATGATGA+TGG | + | chr7.2:17253881-17253900 | MS.gene072320:CDS | 40.0% | |
| GGGAAGTAGTATGTGATTCA+GGG | + | chr7.2:17254369-17254388 | MS.gene072320:CDS | 40.0% | |
| GTATCACCATCATCATAGGA+AGG | - | chr7.2:17253890-17253909 | None:intergenic | 40.0% | |
| GTGAATGGAGCTAAGATTTC+TGG | + | chr7.2:17255686-17255705 | MS.gene072320:CDS | 40.0% | |
| TGGGAAGTAGTATGTGATTC+AGG | + | chr7.2:17254368-17254387 | MS.gene072320:CDS | 40.0% | |
| TTCATGAGAGCTACAGAGAT+CGG | - | chr7.2:17256130-17256149 | None:intergenic | 40.0% | |
| TTGTTGCATAAAGCCTTAGC+AGG | - | chr7.2:17256781-17256800 | None:intergenic | 40.0% | |
| ! | ATCTCAGTATTGGAAGCTTG+GGG | + | chr7.2:17255627-17255646 | MS.gene072320:intron | 40.0% |
| ! | GATTTTTCGTGCTTAGACCA+TGG | + | chr7.2:17253947-17253966 | MS.gene072320:CDS | 40.0% |
| !! | GTTTCGGGAGTATTAGTGAA+TGG | + | chr7.2:17255671-17255690 | MS.gene072320:CDS | 40.0% |
| !! | TCTAGCTCTATCATAGGAAC+TGG | + | chr7.2:17255268-17255287 | MS.gene072320:CDS | 40.0% |
| !!! | AAGATGGAGGAGACGTTTTT+TGG | - | chr7.2:17255859-17255878 | None:intergenic | 40.0% |
| !!! | AATTTTCTTTGGTCTTGCGG+TGG | + | chr7.2:17256353-17256372 | MS.gene072320:intron | 40.0% |
| AAAGCTCACGAGGACAAAGA+AGG | - | chr7.2:17255774-17255793 | None:intergenic | 45.0% | |
| CAAGGACCAGAGAATCTGAT+TGG | - | chr7.2:17254440-17254459 | None:intergenic | 45.0% | |
| GATTATGGAGCTAAAGGGGA+TGG | + | chr7.2:17254007-17254026 | MS.gene072320:CDS | 45.0% | |
| GGTGGCAAAACTCATGCAAA+AGG | + | chr7.2:17254739-17254758 | MS.gene072320:CDS | 45.0% | |
| TCAGGCATTCAAGAAGGCTT+GGG | + | chr7.2:17254349-17254368 | MS.gene072320:intron | 45.0% | |
| TCGAATCCTGGAATGAAAGG+TGG | - | chr7.2:17255153-17255172 | None:intergenic | 45.0% | |
| TCTTGCGGTGGTTAAATGCA+GGG | + | chr7.2:17256365-17256384 | MS.gene072320:intron | 45.0% | |
| TGAAGAAGGAGAACCTGCTA+AGG | + | chr7.2:17256765-17256784 | MS.gene072320:CDS | 45.0% | |
| TGGTCATACTGATGACACAC+AGG | + | chr7.2:17254027-17254046 | MS.gene072320:CDS | 45.0% | |
| TGTCCCACATGGCCAATTAT+AGG | - | chr7.2:17254321-17254340 | None:intergenic | 45.0% | |
| TGTGTTTATGCAGGACTCTG+CGG | + | chr7.2:17256615-17256634 | MS.gene072320:intron | 45.0% | |
| TTCAGGCATTCAAGAAGGCT+TGG | + | chr7.2:17254348-17254367 | MS.gene072320:intron | 45.0% | |
| ! | GATTTAGTGGATCACACCAG+AGG | - | chr7.2:17256095-17256114 | None:intergenic | 45.0% |
| ! | TCTCAGTATTGGAAGCTTGG+GGG | + | chr7.2:17255628-17255647 | MS.gene072320:intron | 45.0% |
| ! | TCTCTTTTTGCAGCCTTGCA+AGG | + | chr7.2:17254888-17254907 | MS.gene072320:intron | 45.0% |
| !! | TTCAGGGCAAGCAGTTTTAG+TGG | + | chr7.2:17254385-17254404 | MS.gene072320:CDS | 45.0% |
| !!! | ATGGAGGAGACGTTTTTTGG+TGG | - | chr7.2:17255856-17255875 | None:intergenic | 45.0% |
| ACAGACATTACCTGTGGACC+AGG | + | chr7.2:17255488-17255507 | MS.gene072320:CDS | 50.0% | |
| CTAACTGAGCAAAGCTCACG+AGG | - | chr7.2:17255784-17255803 | None:intergenic | 50.0% | |
| CTCACGAGGACAAAGAAGGA+GGG | - | chr7.2:17255770-17255789 | None:intergenic | 50.0% | |
| GAAGCCACAGACATTACCTG+TGG | + | chr7.2:17255482-17255501 | MS.gene072320:CDS | 50.0% | |
| GAGAACGTGAAGTGACACCA+TGG | - | chr7.2:17253967-17253986 | None:intergenic | 50.0% | |
| GGGAATAGTCCTAACACCGA+TGG | + | chr7.2:17255211-17255230 | MS.gene072320:CDS | 50.0% | |
| GGTTAAATGCAGGGAGGTTC+AGG | + | chr7.2:17256374-17256393 | MS.gene072320:intron | 50.0% | |
| GTCTTGCGGTGGTTAAATGC+AGG | + | chr7.2:17256364-17256383 | MS.gene072320:intron | 50.0% | |
| TACTCCCGAAACAATGTCCC+TGG | - | chr7.2:17255663-17255682 | None:intergenic | 50.0% | |
| TCACGAGGACAAAGAAGGAG+GGG | - | chr7.2:17255769-17255788 | None:intergenic | 50.0% | |
| TGGTCCACAGGTAATGTCTG+TGG | - | chr7.2:17255489-17255508 | None:intergenic | 50.0% | |
| !! | TCGGTGTTAGGACTATTCCC+TGG | - | chr7.2:17255211-17255230 | None:intergenic | 50.0% |
| !!! | AGACGTTTTTTGGTGGTGGC+CGG | - | chr7.2:17255849-17255868 | None:intergenic | 50.0% |
| !!! | GAGGAGACGTTTTTTGGTGG+TGG | - | chr7.2:17255853-17255872 | None:intergenic | 50.0% |
| AACTACCTGATGCCATGGCC+TGG | - | chr7.2:17255509-17255528 | None:intergenic | 55.0% | |
| AAGGTTCGGGGTTCAAACCC+CGG | + | chr7.2:17255827-17255846 | MS.gene072320:intron | 55.0% | |
| ATTACCTGTGGACCAGGCCA+TGG | + | chr7.2:17255494-17255513 | MS.gene072320:CDS | 55.0% | |
| CTTGGGGGCTGGAAAATCCA+GGG | + | chr7.2:17255643-17255662 | MS.gene072320:CDS | 55.0% | |
| GCCTTGCAAGGATGCTCCAA+CGG | + | chr7.2:17254900-17254919 | MS.gene072320:intron | 55.0% | |
| GCTCACGAGGACAAAGAAGG+AGG | - | chr7.2:17255771-17255790 | None:intergenic | 55.0% | |
| GGGGGAACCATCGATGGAAA+AGG | + | chr7.2:17254708-17254727 | MS.gene072320:CDS | 55.0% | |
| GTCTCAACGTGTCATCGCCA+GGG | + | chr7.2:17255191-17255210 | MS.gene072320:CDS | 55.0% | |
| TGCGGTGGTTAAATGCAGGG+AGG | + | chr7.2:17256368-17256387 | MS.gene072320:intron | 55.0% | |
| ! | AATGGTGGGGGAACCATCGA+TGG | + | chr7.2:17254702-17254721 | MS.gene072320:CDS | 55.0% |
| ! | ACCGTTGGAGCATCCTTGCA+AGG | - | chr7.2:17254904-17254923 | None:intergenic | 55.0% |
| ! | AGTATTGGAAGCTTGGGGGC+TGG | + | chr7.2:17255632-17255651 | MS.gene072320:intron | 55.0% |
| !!! | ACGTTTTTTGGTGGTGGCCG+GGG | - | chr7.2:17255847-17255866 | None:intergenic | 55.0% |
| !!! | GACGTTTTTTGGTGGTGGCC+GGG | - | chr7.2:17255848-17255867 | None:intergenic | 55.0% |
| GCTTGGGGGCTGGAAAATCC+AGG | + | chr7.2:17255642-17255661 | MS.gene072320:CDS | 60.0% | |
| GGTCTCAACGTGTCATCGCC+AGG | + | chr7.2:17255190-17255209 | MS.gene072320:CDS | 60.0% | |
| GATGCCATGGCCTGGTCCAC+AGG | - | chr7.2:17255501-17255520 | None:intergenic | 65.0% | |
| GTGGACCAGGCCATGGCATC+AGG | + | chr7.2:17255501-17255520 | MS.gene072320:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 17253841 | 17256849 | 17253841 | ID=MS.gene072320 |
| chr7.2 | mRNA | 17253841 | 17256849 | 17253841 | ID=MS.gene072320.t1;Parent=MS.gene072320 |
| chr7.2 | exon | 17253841 | 17254048 | 17253841 | ID=MS.gene072320.t1.exon1;Parent=MS.gene072320.t1 |
| chr7.2 | CDS | 17253841 | 17254048 | 17253841 | ID=cds.MS.gene072320.t1;Parent=MS.gene072320.t1 |
| chr7.2 | exon | 17254353 | 17254481 | 17254353 | ID=MS.gene072320.t1.exon2;Parent=MS.gene072320.t1 |
| chr7.2 | CDS | 17254353 | 17254481 | 17254353 | ID=cds.MS.gene072320.t1;Parent=MS.gene072320.t1 |
| chr7.2 | exon | 17254606 | 17254773 | 17254606 | ID=MS.gene072320.t1.exon3;Parent=MS.gene072320.t1 |
| chr7.2 | CDS | 17254606 | 17254773 | 17254606 | ID=cds.MS.gene072320.t1;Parent=MS.gene072320.t1 |
| chr7.2 | exon | 17254901 | 17254921 | 17254901 | ID=MS.gene072320.t1.exon4;Parent=MS.gene072320.t1 |
| chr7.2 | CDS | 17254901 | 17254921 | 17254901 | ID=cds.MS.gene072320.t1;Parent=MS.gene072320.t1 |
| chr7.2 | exon | 17255082 | 17255289 | 17255082 | ID=MS.gene072320.t1.exon5;Parent=MS.gene072320.t1 |
| chr7.2 | CDS | 17255082 | 17255289 | 17255082 | ID=cds.MS.gene072320.t1;Parent=MS.gene072320.t1 |
| chr7.2 | exon | 17255441 | 17255522 | 17255441 | ID=MS.gene072320.t1.exon6;Parent=MS.gene072320.t1 |
| chr7.2 | CDS | 17255441 | 17255522 | 17255441 | ID=cds.MS.gene072320.t1;Parent=MS.gene072320.t1 |
| chr7.2 | exon | 17255634 | 17255742 | 17255634 | ID=MS.gene072320.t1.exon7;Parent=MS.gene072320.t1 |
| chr7.2 | CDS | 17255634 | 17255742 | 17255634 | ID=cds.MS.gene072320.t1;Parent=MS.gene072320.t1 |
| chr7.2 | exon | 17256386 | 17256505 | 17256386 | ID=MS.gene072320.t1.exon8;Parent=MS.gene072320.t1 |
| chr7.2 | CDS | 17256386 | 17256505 | 17256386 | ID=cds.MS.gene072320.t1;Parent=MS.gene072320.t1 |
| chr7.2 | exon | 17256628 | 17256849 | 17256628 | ID=MS.gene072320.t1.exon9;Parent=MS.gene072320.t1 |
| chr7.2 | CDS | 17256628 | 17256849 | 17256628 | ID=cds.MS.gene072320.t1;Parent=MS.gene072320.t1 |
| Gene Sequence |
| Protein sequence |
