Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072874.t1 | XP_003603366.2 | 99.5 | 191 | 1 | 0 | 1 | 191 | 1 | 191 | 3.60E-104 | 387.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072874.t1 | Q9LFP0 | 77.2 | 189 | 43 | 0 | 1 | 189 | 1 | 189 | 2.0e-79 | 296.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072874.t1 | G7JAH8 | 99.5 | 191 | 1 | 0 | 1 | 191 | 1 | 191 | 2.6e-104 | 387.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79217 | MS.gene072874 | PPI |
| MS.gene045117 | MS.gene072874 | PPI |
| MS.gene052207 | MS.gene072874 | PPI |
| MS.gene75475 | MS.gene072874 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072874.t1 | MTR_3g106780 | 99.476 | 191 | 1 | 0 | 1 | 191 | 1 | 191 | 3.76e-139 | 386 |
| MS.gene072874.t1 | MTR_3g106780 | 97.126 | 174 | 5 | 0 | 1 | 174 | 1 | 174 | 5.81e-122 | 342 |
| MS.gene072874.t1 | MTR_3g106780 | 99.324 | 148 | 1 | 0 | 1 | 148 | 1 | 148 | 8.47e-106 | 301 |
| MS.gene072874.t1 | MTR_3g103010 | 75.723 | 173 | 42 | 0 | 11 | 183 | 8 | 180 | 6.30e-94 | 271 |
| MS.gene072874.t1 | MTR_5g012210 | 74.566 | 173 | 44 | 0 | 11 | 183 | 10 | 182 | 4.22e-90 | 262 |
| MS.gene072874.t1 | MTR_4g101460 | 71.523 | 151 | 43 | 0 | 33 | 183 | 1 | 151 | 2.69e-74 | 221 |
| MS.gene072874.t1 | MTR_3g106780 | 79.231 | 130 | 27 | 0 | 1 | 130 | 1 | 130 | 5.95e-69 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072874.t1 | AT5G11160 | 77.249 | 189 | 43 | 0 | 1 | 189 | 1 | 189 | 1.26e-103 | 296 |
| MS.gene072874.t1 | AT1G80050 | 75.132 | 189 | 47 | 0 | 1 | 189 | 1 | 189 | 7.86e-101 | 289 |
| MS.gene072874.t1 | AT4G12440 | 72.376 | 181 | 49 | 1 | 5 | 185 | 3 | 182 | 5.75e-92 | 266 |
| MS.gene072874.t1 | AT4G12440 | 72.376 | 181 | 49 | 1 | 5 | 185 | 3 | 182 | 5.75e-92 | 266 |
| MS.gene072874.t1 | AT4G22570 | 71.111 | 180 | 52 | 0 | 6 | 185 | 4 | 183 | 2.38e-89 | 259 |
| MS.gene072874.t1 | AT1G27450 | 69.942 | 173 | 52 | 0 | 11 | 183 | 8 | 180 | 1.53e-87 | 255 |
| MS.gene072874.t1 | AT1G27450 | 69.942 | 173 | 52 | 0 | 11 | 183 | 8 | 180 | 1.53e-87 | 255 |
| MS.gene072874.t1 | AT1G27450 | 69.942 | 173 | 52 | 0 | 11 | 183 | 68 | 240 | 8.54e-87 | 255 |
| MS.gene072874.t1 | AT5G11160 | 77.703 | 148 | 33 | 0 | 1 | 148 | 1 | 148 | 6.29e-81 | 238 |
| MS.gene072874.t1 | AT1G80050 | 75.159 | 157 | 39 | 0 | 33 | 189 | 1 | 157 | 9.29e-81 | 237 |
| MS.gene072874.t1 | AT1G27450 | 61.111 | 198 | 52 | 1 | 11 | 183 | 84 | 281 | 1.21e-80 | 241 |
| MS.gene072874.t1 | AT4G12440 | 77.083 | 96 | 21 | 1 | 4 | 99 | 2 | 96 | 5.71e-48 | 152 |
| MS.gene072874.t1 | AT4G12440 | 77.083 | 96 | 21 | 1 | 4 | 99 | 2 | 96 | 5.71e-48 | 152 |
| MS.gene072874.t1 | AT4G22570 | 72.632 | 95 | 26 | 0 | 6 | 100 | 4 | 98 | 1.76e-44 | 143 |
Find 41 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGGACGGTGTAAACTTCT+TGG | 0.284373 | 3.2:+87406150 | MS.gene072874:intron |
| TGGGAGATGTGTTGCAATCT+AGG | 0.320267 | 3.2:-87403051 | None:intergenic |
| CGCTGTCCAACCTGGTGAAC+GGG | 0.371582 | 3.2:+87405178 | MS.gene072874:CDS |
| GCCGAAGAAAATGGTCTTAA+GGG | 0.373266 | 3.2:+87403024 | MS.gene072874:CDS |
| TGCCGAAGAAAATGGTCTTA+AGG | 0.403352 | 3.2:+87403023 | MS.gene072874:CDS |
| TCTGCAGTTGCGTTGGGAAT+TGG | 0.405636 | 3.2:+87403640 | MS.gene072874:CDS |
| GAAGCAAGAGGGTTTGTGTT+TGG | 0.411897 | 3.2:+87403616 | MS.gene072874:CDS |
| GATTGGTGTGCCTGAGGTTA+AGG | 0.414050 | 3.2:+87405426 | MS.gene072874:CDS |
| AGAATGTTTGCCGAAGAAAA+TGG | 0.424560 | 3.2:+87403015 | None:intergenic |
| GTGGAATGTGCTTGTGTGAT+TGG | 0.438632 | 3.2:+87405409 | MS.gene072874:CDS |
| ATCGACGACTTGGTTGCAAC+AGG | 0.448378 | 3.2:+87405209 | MS.gene072874:CDS |
| TTTGGTTCTGCAGTTGCGTT+GGG | 0.461360 | 3.2:+87403634 | MS.gene072874:CDS |
| AGCTTGCGAGGTTTGCGTAA+AGG | 0.464262 | 3.2:-87403676 | None:intergenic |
| GAGGGACGACTCTGATGGAC+TGG | 0.472031 | 3.2:-87403071 | None:intergenic |
| GCGCTGTCCAACCTGGTGAA+CGG | 0.478342 | 3.2:+87405177 | MS.gene072874:CDS |
| ACGCAAACCTCGCAAGCTAC+CGG | 0.479212 | 3.2:+87403681 | MS.gene072874:CDS |
| GTTTGGTTCTGCAGTTGCGT+TGG | 0.491474 | 3.2:+87403633 | MS.gene072874:CDS |
| TGCAACAGGTGGAACTTTGT+CGG | 0.495035 | 3.2:+87405223 | MS.gene072874:CDS |
| ATGCACATTTCAGTTGTTGC+TGG | 0.495656 | 3.2:+87403430 | MS.gene072874:CDS |
| ACAGGTGGAACTTTGTCGGC+AGG | 0.532728 | 3.2:+87405227 | MS.gene072874:CDS |
| GGGAGATGTGTTGCAATCTA+GGG | 0.544429 | 3.2:-87403050 | None:intergenic |
| GGCTATAGTTATCGACGACT+TGG | 0.544698 | 3.2:+87405199 | MS.gene072874:CDS |
| CATGTCGGCGCTGTCCAACC+TGG | 0.547674 | 3.2:+87405170 | MS.gene072874:CDS |
| CGCAAACCTCGCAAGCTACC+GGG | 0.550896 | 3.2:+87403682 | MS.gene072874:CDS |
| GGCTCCACAAGCACATAAAG+TGG | 0.560359 | 3.2:-87406177 | None:intergenic |
| CTGAGCCATACCTTAACCTC+AGG | 0.561630 | 3.2:-87405436 | None:intergenic |
| ATAACTATAGCCCGTTCACC+AGG | 0.563626 | 3.2:-87405188 | None:intergenic |
| ACGTGCTAAGGCTGAAGTAG+TGG | 0.569286 | 3.2:+87405390 | MS.gene072874:CDS |
| AAAGCCACTTTATGTGCTTG+TGG | 0.574929 | 3.2:+87406173 | MS.gene072874:CDS |
| GTTGTACCCGGTAGCTTGCG+AGG | 0.575231 | 3.2:-87403688 | None:intergenic |
| GACGACTTGGTTGCAACAGG+TGG | 0.588976 | 3.2:+87405212 | MS.gene072874:CDS |
| CAATTATGTAGAACGTGCTA+AGG | 0.591327 | 3.2:+87405378 | MS.gene072874:intron |
| GAAGTGAGGGACGACTCTGA+TGG | 0.595744 | 3.2:-87403076 | None:intergenic |
| CTATAGCCCGTTCACCAGGT+TGG | 0.604880 | 3.2:-87405184 | None:intergenic |
| TTGTGTGATTGGTGTGCCTG+AGG | 0.609251 | 3.2:+87405420 | MS.gene072874:CDS |
| ATGCAGGAATTGAAGCAAGA+GGG | 0.621946 | 3.2:+87403605 | MS.gene072874:intron |
| GACATTGTTGTTAGATCACA+AGG | 0.630489 | 3.2:+87403363 | MS.gene072874:CDS |
| TATGCAGGAATTGAAGCAAG+AGG | 0.643982 | 3.2:+87403604 | MS.gene072874:intron |
| AGGGACGACTCTGATGGACT+GGG | 0.649098 | 3.2:-87403070 | None:intergenic |
| GATTGTTTAGAAATGCATGT+CGG | 0.652967 | 3.2:+87405155 | MS.gene072874:CDS |
| AAGCATTCATCTACTTGACG+TGG | 0.677392 | 3.2:-87406198 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAAATAAATAAA+TGG | - | chr3.2:87404156-87404175 | None:intergenic | 0.0% |
| !! | AAAAAACTAAGTAATAAAAT+GGG | + | chr3.2:87403252-87403271 | MS.gene072874:intron | 10.0% |
| !! | TTATTTATATTTATTTAGGA+GGG | + | chr3.2:87403956-87403975 | MS.gene072874:intron | 10.0% |
| !! | TTTATTTATATTTATTTAGG+AGG | + | chr3.2:87403955-87403974 | MS.gene072874:intron | 10.0% |
| !!! | AAAAGAGAAATTTTTTATTT+TGG | + | chr3.2:87403528-87403547 | MS.gene072874:intron | 10.0% |
| !!! | AAAGAGAAATTTTTTATTTT+GGG | + | chr3.2:87403529-87403548 | MS.gene072874:intron | 10.0% |
| !!! | AATAAACTCAAATAAAATTT+TGG | - | chr3.2:87404018-87404037 | None:intergenic | 10.0% |
| !!! | ATTTGTATTTATTCATTTTT+TGG | - | chr3.2:87405553-87405572 | None:intergenic | 10.0% |
| !!! | TATTTGTATTTATTCATTTT+TGG | - | chr3.2:87405554-87405573 | None:intergenic | 10.0% |
| !! | AATAAAAATGTTGATGTATT+TGG | - | chr3.2:87403927-87403946 | None:intergenic | 15.0% |
| !! | ACAGAAATTAAATAAAAAAG+GGG | - | chr3.2:87403558-87403577 | None:intergenic | 15.0% |
| !! | ATTAAATAAGAAAAAAAGGA+AGG | - | chr3.2:87403133-87403152 | None:intergenic | 15.0% |
| !! | CAAAAAACTAAGTAATAAAA+TGG | + | chr3.2:87403251-87403270 | MS.gene072874:intron | 15.0% |
| !! | CACAGAAATTAAATAAAAAA+GGG | - | chr3.2:87403559-87403578 | None:intergenic | 15.0% |
| !! | TATTTATATTTATTTAGGAG+GGG | + | chr3.2:87403957-87403976 | MS.gene072874:intron | 15.0% |
| !! | TCACAGAAATTAAATAAAAA+AGG | - | chr3.2:87403560-87403579 | None:intergenic | 15.0% |
| !! | TTCAAATAAGATTAATAACA+AGG | - | chr3.2:87406091-87406110 | None:intergenic | 15.0% |
| !!! | TTAAATTTCTATCTTGTTAT+AGG | + | chr3.2:87405690-87405709 | MS.gene072874:intron | 15.0% |
| !! | AAGTTGTATGTTATATGATA+GGG | + | chr3.2:87404793-87404812 | MS.gene072874:intron | 20.0% |
| !! | AATAAACACTTTCGATATAA+AGG | + | chr3.2:87404182-87404201 | MS.gene072874:intron | 20.0% |
| !! | AATATATATACTATTCGGTA+CGG | + | chr3.2:87404543-87404562 | MS.gene072874:intron | 20.0% |
| !! | AATGAAACATATCAAAGTTT+AGG | - | chr3.2:87405089-87405108 | None:intergenic | 20.0% |
| !! | ACATATACTATTTAACTCAA+AGG | - | chr3.2:87404906-87404925 | None:intergenic | 20.0% |
| !! | GAGTTTATTCAAAGAATATT+AGG | + | chr3.2:87404029-87404048 | MS.gene072874:intron | 20.0% |
| !! | GCTAAATATAAGAAAAAGTT+GGG | + | chr3.2:87403863-87403882 | MS.gene072874:intron | 20.0% |
| !! | TAAATAGTATATGTTTGGTT+TGG | + | chr3.2:87404912-87404931 | MS.gene072874:intron | 20.0% |
| !! | TAAGTTGTATGTTATATGAT+AGG | + | chr3.2:87404792-87404811 | MS.gene072874:intron | 20.0% |
| !! | TGAGTTAAATAGTATATGTT+TGG | + | chr3.2:87404907-87404926 | MS.gene072874:intron | 20.0% |
| !! | TGATTTAATGTAATTAGGTT+TGG | + | chr3.2:87403577-87403596 | MS.gene072874:intron | 20.0% |
| !! | TGCTAAATATAAGAAAAAGT+TGG | + | chr3.2:87403862-87403881 | MS.gene072874:intron | 20.0% |
| !! | TTATAATTGTTCATTGAATC+TGG | + | chr3.2:87405319-87405338 | MS.gene072874:intron | 20.0% |
| !! | TTCTGTGATTTAATGTAATT+AGG | + | chr3.2:87403572-87403591 | MS.gene072874:intron | 20.0% |
| !! | TTGCCAATATATATACTATT+CGG | + | chr3.2:87404538-87404557 | MS.gene072874:intron | 20.0% |
| !!! | AAAGAAAGCATAAAGTATAT+TGG | - | chr3.2:87405354-87405373 | None:intergenic | 20.0% |
| !!! | AAGAAAAGAAAACCATTTTT+AGG | - | chr3.2:87403102-87403121 | None:intergenic | 20.0% |
| !!! | AAGAAAGCATAAAGTATATT+GGG | - | chr3.2:87405353-87405372 | None:intergenic | 20.0% |
| !!! | AATATCATTCTAGAAGTTTA+AGG | - | chr3.2:87406062-87406081 | None:intergenic | 20.0% |
| !!! | AATCTTATTTGAAATCATGA+TGG | + | chr3.2:87406098-87406117 | MS.gene072874:intron | 20.0% |
| !!! | ACTTTTTCTTATATTTAGCA+CGG | - | chr3.2:87403862-87403881 | None:intergenic | 20.0% |
| !!! | AGAAAAGAAAACCATTTTTA+GGG | - | chr3.2:87403101-87403120 | None:intergenic | 20.0% |
| !!! | CAATATTTTCAAATTGATCA+TGG | + | chr3.2:87404566-87404585 | MS.gene072874:intron | 20.0% |
| !!! | GAAAAATATTCTCTAGAATA+CGG | + | chr3.2:87405128-87405147 | MS.gene072874:CDS | 20.0% |
| !!! | TGAAATTTCTATCTTGTTAT+AGG | + | chr3.2:87405502-87405521 | MS.gene072874:intron | 20.0% |
| ! | AAATCATCGTCAATAATCAT+TGG | - | chr3.2:87404962-87404981 | None:intergenic | 25.0% |
| ! | GATGTATGAATATTCAATGT+GGG | + | chr3.2:87404396-87404415 | MS.gene072874:intron | 25.0% |
| ! | GTACCGAATAGTATATATAT+TGG | - | chr3.2:87404544-87404563 | None:intergenic | 25.0% |
| ! | TAACAAGATAGAAATTTCAG+AGG | - | chr3.2:87405501-87405520 | None:intergenic | 25.0% |
| ! | TATGTACAACAAATTTGAAG+TGG | - | chr3.2:87405814-87405833 | None:intergenic | 25.0% |
| ! | TCTGTTTAACCAAACTAATT+GGG | + | chr3.2:87404757-87404776 | MS.gene072874:intron | 25.0% |
| ! | TGATGTATGAATATTCAATG+TGG | + | chr3.2:87404395-87404414 | MS.gene072874:intron | 25.0% |
| ! | TGATTCATACAATTTCAATC+AGG | - | chr3.2:87404697-87404716 | None:intergenic | 25.0% |
| ! | TTAAAAATGTTAAGGAGAGT+TGG | - | chr3.2:87406023-87406042 | None:intergenic | 25.0% |
| ! | TTCTGTTTAACCAAACTAAT+TGG | + | chr3.2:87404756-87404775 | MS.gene072874:intron | 25.0% |
| !! | AAACAAATTTGAAGTCCAAT+AGG | - | chr3.2:87405624-87405643 | None:intergenic | 25.0% |
| !! | ACTAAACTTTTATGTGGAAT+GGG | + | chr3.2:87403795-87403814 | MS.gene072874:intron | 25.0% |
| !! | AGAAAGCATAAAGTATATTG+GGG | - | chr3.2:87405352-87405371 | None:intergenic | 25.0% |
| !! | AGTAGTACTAAACTTTTATG+TGG | + | chr3.2:87403789-87403808 | MS.gene072874:intron | 25.0% |
| !! | ATGTTATATGATAGGGATTT+TGG | + | chr3.2:87404800-87404819 | MS.gene072874:intron | 25.0% |
| !! | CTTTGATATGTTTCATTTTC+AGG | + | chr3.2:87405092-87405111 | MS.gene072874:intron | 25.0% |
| !! | CTTTTTCTTATATTTAGCAC+GGG | - | chr3.2:87403861-87403880 | None:intergenic | 25.0% |
| !! | TACTAAACTTTTATGTGGAA+TGG | + | chr3.2:87403794-87403813 | MS.gene072874:intron | 25.0% |
| !! | TTAATGTAATTAGGTTTGGT+TGG | + | chr3.2:87403581-87403600 | MS.gene072874:intron | 25.0% |
| AAACTAATTGGGGCTTAATT+TGG | + | chr3.2:87404768-87404787 | MS.gene072874:intron | 30.0% | |
| AAATTAAGCCCCAATTAGTT+TGG | - | chr3.2:87404769-87404788 | None:intergenic | 30.0% | |
| AACAAAAAAAGTAGTGCATG+AGG | - | chr3.2:87403476-87403495 | None:intergenic | 30.0% | |
| ACAAAAAAAGTAGTGCATGA+GGG | - | chr3.2:87403475-87403494 | None:intergenic | 30.0% | |
| ACTAAGTAATAAAATGGGTC+TGG | + | chr3.2:87403257-87403276 | MS.gene072874:intron | 30.0% | |
| ACTTTCCTCTTAGATATTGT+GGG | - | chr3.2:87404315-87404334 | None:intergenic | 30.0% | |
| AGAAAAAAAGGAAGGAAAGA+AGG | - | chr3.2:87403125-87403144 | None:intergenic | 30.0% | |
| AGGTACTCTTAAAAGCTTAA+AGG | + | chr3.2:87405522-87405541 | MS.gene072874:intron | 30.0% | |
| ATAAGTCAAAAAATGACGCA+GGG | - | chr3.2:87405303-87405322 | None:intergenic | 30.0% | |
| ATAGATACGTTCTACAATTC+AGG | - | chr3.2:87404994-87405013 | None:intergenic | 30.0% | |
| CTAAGTAATAAAATGGGTCT+GGG | + | chr3.2:87403258-87403277 | MS.gene072874:intron | 30.0% | |
| CTGTTTAACCAAACTAATTG+GGG | + | chr3.2:87404758-87404777 | MS.gene072874:intron | 30.0% | |
| GATTGTTTAGAAATGCATGT+CGG | + | chr3.2:87405155-87405174 | MS.gene072874:CDS | 30.0% | |
| TAGATACGTTCTACAATTCA+GGG | - | chr3.2:87404993-87405012 | None:intergenic | 30.0% | |
| TATAAGTCAAAAAATGACGC+AGG | - | chr3.2:87405304-87405323 | None:intergenic | 30.0% | |
| TATATTTATTTAGGAGGGGA+TGG | + | chr3.2:87403961-87403980 | MS.gene072874:intron | 30.0% | |
| TGAAATTGTATGAATCAACC+AGG | + | chr3.2:87404700-87404719 | MS.gene072874:intron | 30.0% | |
| TTCATACAATTTCAATCAGG+AGG | - | chr3.2:87404694-87404713 | None:intergenic | 30.0% | |
| TTCCATCACATAAAGTCAAT+TGG | + | chr3.2:87404259-87404278 | MS.gene072874:intron | 30.0% | |
| ! | ATATCCTTATAGACTTGCTT+AGG | + | chr3.2:87405870-87405889 | MS.gene072874:intron | 30.0% |
| ! | CAACAAATTTGAAGTGGAAT+AGG | - | chr3.2:87405808-87405827 | None:intergenic | 30.0% |
| ! | CACAAAAATGTGTAATTTGC+AGG | + | chr3.2:87403319-87403338 | MS.gene072874:intron | 30.0% |
| ! | CATCAAATTGATGATCAGAT+TGG | + | chr3.2:87404592-87404611 | MS.gene072874:intron | 30.0% |
| ! | CTGAATTATTGATAGCCTAT+TGG | + | chr3.2:87405606-87405625 | MS.gene072874:intron | 30.0% |
| ! | GTTAAGACCTTTAAGCTTTT+AGG | - | chr3.2:87405720-87405739 | None:intergenic | 30.0% |
| ! | TATCCTTATAGACTTGCTTA+GGG | + | chr3.2:87405871-87405890 | MS.gene072874:intron | 30.0% |
| !! | AGGAATAAAACTTTTAGGTG+TGG | + | chr3.2:87405247-87405266 | MS.gene072874:intron | 30.0% |
| !!! | AATGAAGCCTTCTTTTTTCA+GGG | + | chr3.2:87406132-87406151 | MS.gene072874:intron | 30.0% |
| !!! | TAATGAAGCCTTCTTTTTTC+AGG | + | chr3.2:87406131-87406150 | MS.gene072874:intron | 30.0% |
| AATTGTATGAATCAACCAGG+TGG | + | chr3.2:87404703-87404722 | MS.gene072874:intron | 35.0% | |
| AGGTACTCCTAAAAGCTTAA+AGG | + | chr3.2:87405710-87405729 | MS.gene072874:intron | 35.0% | |
| AGTGAAACAAATGTATGTGC+TGG | + | chr3.2:87404460-87404479 | MS.gene072874:intron | 35.0% | |
| ATAAAGAGTTGCAGATCTGT+TGG | - | chr3.2:87403217-87403236 | None:intergenic | 35.0% | |
| ATGAACAGAAATGTTGTACC+CGG | - | chr3.2:87403703-87403722 | None:intergenic | 35.0% | |
| ATGTGATGTTCATTACTGTG+TGG | + | chr3.2:87404067-87404086 | MS.gene072874:intron | 35.0% | |
| ATTACTTGTTCACTTGTGCT+CGG | - | chr3.2:87405852-87405871 | None:intergenic | 35.0% | |
| CAATTATGTAGAACGTGCTA+AGG | + | chr3.2:87405378-87405397 | MS.gene072874:intron | 35.0% | |
| CACTTTCCTCTTAGATATTG+TGG | - | chr3.2:87404316-87404335 | None:intergenic | 35.0% | |
| CTTAGCACGTTCTACATAAT+TGG | - | chr3.2:87405380-87405399 | None:intergenic | 35.0% | |
| TAACCCTAAGCAAGTCTATA+AGG | - | chr3.2:87405877-87405896 | None:intergenic | 35.0% | |
| TAAGTCAAAAAATGACGCAG+GGG | - | chr3.2:87405302-87405321 | None:intergenic | 35.0% | |
| TGGAGGTAAACGTATCTAAT+TGG | + | chr3.2:87404723-87404742 | MS.gene072874:intron | 35.0% | |
| TTGATTGAACTTAAGCACAC+TGG | - | chr3.2:87404840-87404859 | None:intergenic | 35.0% | |
| TTTCGATATAAAGGCTGTCA+TGG | + | chr3.2:87404191-87404210 | MS.gene072874:intron | 35.0% | |
| TTTCTTATATTTAGCACGGG+AGG | - | chr3.2:87403858-87403877 | None:intergenic | 35.0% | |
| ! | AACTTTTATGTGGAATGGGA+TGG | + | chr3.2:87403799-87403818 | MS.gene072874:intron | 35.0% |
| ! | ACCCTTAAGACCATTTTCTT+CGG | - | chr3.2:87403028-87403047 | None:intergenic | 35.0% |
| ! | AGCCAATTGACTTTATGTGA+TGG | - | chr3.2:87404264-87404283 | None:intergenic | 35.0% |
| ! | GACATTGTTGTTAGATCACA+AGG | + | chr3.2:87403363-87403382 | MS.gene072874:CDS | 35.0% |
| ! | TCGGCAGGAATAAAACTTTT+AGG | + | chr3.2:87405242-87405261 | MS.gene072874:CDS | 35.0% |
| ! | TTGTTCATTGAATCTGGTTC+TGG | + | chr3.2:87405325-87405344 | MS.gene072874:intron | 35.0% |
| ! | TTTTCCTCTTGATCTGCATT+GGG | + | chr3.2:87404510-87404529 | MS.gene072874:intron | 35.0% |
| ! | TTTTTCCTCTTGATCTGCAT+TGG | + | chr3.2:87404509-87404528 | MS.gene072874:intron | 35.0% |
| !! | AAACCATTTTTAGGGAAGTG+AGG | - | chr3.2:87403093-87403112 | None:intergenic | 35.0% |
| !! | AACCATTTTTAGGGAAGTGA+GGG | - | chr3.2:87403092-87403111 | None:intergenic | 35.0% |
| !! | ATATTGTGGGCTAGTTAACT+AGG | - | chr3.2:87404302-87404321 | None:intergenic | 35.0% |
| !! | TATATGTTTGGTTTGGTAGC+TGG | + | chr3.2:87404919-87404938 | MS.gene072874:intron | 35.0% |
| AAAAAAGTAGTGCATGAGGG+AGG | - | chr3.2:87403472-87403491 | None:intergenic | 40.0% | |
| AAAAAGTAGTGCATGAGGGA+GGG | - | chr3.2:87403471-87403490 | None:intergenic | 40.0% | |
| AAGCATTCATCTACTTGACG+TGG | - | chr3.2:87406201-87406220 | None:intergenic | 40.0% | |
| ACTAGCCCACAATATCTAAG+AGG | + | chr3.2:87404307-87404326 | MS.gene072874:intron | 40.0% | |
| AGGAGTGATCAAGTTACTTC+AGG | - | chr3.2:87404674-87404693 | None:intergenic | 40.0% | |
| ATCAATGATGTGCGGTGTAA+AGG | - | chr3.2:87405965-87405984 | None:intergenic | 40.0% | |
| ATGCACATTTCAGTTGTTGC+TGG | + | chr3.2:87403430-87403449 | MS.gene072874:CDS | 40.0% | |
| ATGCAGGAATTGAAGCAAGA+GGG | + | chr3.2:87403605-87403624 | MS.gene072874:intron | 40.0% | |
| CAAGTTTCAGCAGCTAAAAG+TGG | - | chr3.2:87403767-87403786 | None:intergenic | 40.0% | |
| CATTTCAGTTGTTGCTGGTA+TGG | + | chr3.2:87403435-87403454 | MS.gene072874:intron | 40.0% | |
| GGAAAAGGATCAATGATGTG+CGG | - | chr3.2:87405973-87405992 | None:intergenic | 40.0% | |
| TATGCAGGAATTGAAGCAAG+AGG | + | chr3.2:87403604-87403623 | MS.gene072874:intron | 40.0% | |
| TGATGTTCATTACTGTGTGG+AGG | + | chr3.2:87404070-87404089 | MS.gene072874:intron | 40.0% | |
| TTACTTGTTCACTTGTGCTC+GGG | - | chr3.2:87405851-87405870 | None:intergenic | 40.0% | |
| TTATATTTAGCACGGGAGGA+GGG | - | chr3.2:87403854-87403873 | None:intergenic | 40.0% | |
| TTCTCCTGTTGTCGATATGA+GGG | + | chr3.2:87405913-87405932 | MS.gene072874:intron | 40.0% | |
| ! | AAAGCCACTTTATGTGCTTG+TGG | + | chr3.2:87406173-87406192 | MS.gene072874:CDS | 40.0% |
| ! | AGGGGATGGAGTATTATCTT+TGG | + | chr3.2:87403975-87403994 | MS.gene072874:intron | 40.0% |
| ! | ATTAGGTTTGGTTGGTATGC+AGG | + | chr3.2:87403589-87403608 | MS.gene072874:intron | 40.0% |
| ! | GCCGAAGAAAATGGTCTTAA+GGG | + | chr3.2:87403024-87403043 | MS.gene072874:CDS | 40.0% |
| ! | GCTGGTATTGTTGCTTAGTT+TGG | + | chr3.2:87404478-87404497 | MS.gene072874:intron | 40.0% |
| ! | GTCTTTGTTTGCATTCACAG+TGG | - | chr3.2:87405046-87405065 | None:intergenic | 40.0% |
| ! | TGCCGAAGAAAATGGTCTTA+AGG | + | chr3.2:87403023-87403042 | MS.gene072874:CDS | 40.0% |
| ! | TGTGATGGAACAACCAAAGT+AGG | - | chr3.2:87404249-87404268 | None:intergenic | 40.0% |
| !!! | AAGCCTTCTTTTTTCAGGGA+CGG | + | chr3.2:87406136-87406155 | MS.gene072874:intron | 40.0% |
| ACACCGTCCCTGAAAAAAGA+AGG | - | chr3.2:87406142-87406161 | None:intergenic | 45.0% | |
| ATAACTATAGCCCGTTCACC+AGG | - | chr3.2:87405191-87405210 | None:intergenic | 45.0% | |
| CTTATATTTAGCACGGGAGG+AGG | - | chr3.2:87403855-87403874 | None:intergenic | 45.0% | |
| CTTCTCCTGTTGTCGATATG+AGG | + | chr3.2:87405912-87405931 | MS.gene072874:intron | 45.0% | |
| GAAGCAAGAGGGTTTGTGTT+TGG | + | chr3.2:87403616-87403635 | MS.gene072874:CDS | 45.0% | |
| GGAACAACCAAAGTAGGACA+AGG | - | chr3.2:87404243-87404262 | None:intergenic | 45.0% | |
| GGCTATAGTTATCGACGACT+TGG | + | chr3.2:87405199-87405218 | MS.gene072874:CDS | 45.0% | |
| GGGAGATGTGTTGCAATCTA+GGG | - | chr3.2:87403053-87403072 | None:intergenic | 45.0% | |
| GTCCCTCACTTCCCTAAAAA+TGG | + | chr3.2:87403087-87403106 | MS.gene072874:CDS | 45.0% | |
| GTGGAATGTGCTTGTGTGAT+TGG | + | chr3.2:87405409-87405428 | MS.gene072874:CDS | 45.0% | |
| TAGATACGTTTACCTCCACC+TGG | - | chr3.2:87404721-87404740 | None:intergenic | 45.0% | |
| TGAGTTATTCCACTGTGCTG+CGG | + | chr3.2:87405016-87405035 | MS.gene072874:intron | 45.0% | |
| TGCAACAGGTGGAACTTTGT+CGG | + | chr3.2:87405223-87405242 | MS.gene072874:CDS | 45.0% | |
| TGGGAGATGTGTTGCAATCT+AGG | - | chr3.2:87403054-87403073 | None:intergenic | 45.0% | |
| TGTATGAATCAACCAGGTGG+AGG | + | chr3.2:87404706-87404725 | MS.gene072874:intron | 45.0% | |
| TTAAGGAGAGTTGGATCTCC+AGG | - | chr3.2:87406014-87406033 | None:intergenic | 45.0% | |
| TTGACCCAATGCAGATCAAG+AGG | - | chr3.2:87404517-87404536 | None:intergenic | 45.0% | |
| !! | CTGGGTGTTTTTGTCTGTGT+TGG | + | chr3.2:87403276-87403295 | MS.gene072874:intron | 45.0% |
| !! | TTTGGTTCTGCAGTTGCGTT+GGG | + | chr3.2:87403634-87403653 | MS.gene072874:CDS | 45.0% |
| !! | AAATAAATATAAATAAAGTT+AGG | - | chr3.2:87403952-87403971 | None:intergenic | 5.0% |
| !! | TAAAATTAAATAAGAAAAAA+AGG | - | chr3.2:87403137-87403156 | None:intergenic | 5.0% |
| !!! | AACTTTATTTATATTTATTT+AGG | + | chr3.2:87403952-87403971 | MS.gene072874:intron | 5.0% |
| !!! | ATTTTTTATTAAAAATGTTA+AGG | - | chr3.2:87406031-87406050 | None:intergenic | 5.0% |
| ACACCAACCCCGTTGTCAAA+TGG | - | chr3.2:87403826-87403845 | None:intergenic | 50.0% | |
| ACGTGCTAAGGCTGAAGTAG+TGG | + | chr3.2:87405390-87405409 | MS.gene072874:CDS | 50.0% | |
| AGCTTGCGAGGTTTGCGTAA+AGG | - | chr3.2:87403679-87403698 | None:intergenic | 50.0% | |
| CACCAACCCCGTTGTCAAAT+GGG | - | chr3.2:87403825-87403844 | None:intergenic | 50.0% | |
| CAGGGACGGTGTAAACTTCT+TGG | + | chr3.2:87406150-87406169 | MS.gene072874:intron | 50.0% | |
| CTGAGCCATACCTTAACCTC+AGG | - | chr3.2:87405439-87405458 | None:intergenic | 50.0% | |
| GATTGGTGTGCCTGAGGTTA+AGG | + | chr3.2:87405426-87405445 | MS.gene072874:CDS | 50.0% | |
| GGCTCCACAAGCACATAAAG+TGG | - | chr3.2:87406180-87406199 | None:intergenic | 50.0% | |
| GTAGCCCTCATATCGACAAC+AGG | - | chr3.2:87405920-87405939 | None:intergenic | 50.0% | |
| GTGTGCCTGAGGTTAAGGTA+TGG | + | chr3.2:87405431-87405450 | MS.gene072874:intron | 50.0% | |
| TCTGCAGTTGCGTTGGGAAT+TGG | + | chr3.2:87403640-87403659 | MS.gene072874:CDS | 50.0% | |
| TGGGATGGCCCATTTGACAA+CGG | + | chr3.2:87403814-87403833 | MS.gene072874:intron | 50.0% | |
| TGTCGATATGAGGGCTACGT+TGG | + | chr3.2:87405922-87405941 | MS.gene072874:intron | 50.0% | |
| TTGTGTGATTGGTGTGCCTG+AGG | + | chr3.2:87405420-87405439 | MS.gene072874:CDS | 50.0% | |
| ! | AAAGGCTGTCATGGTCTTGC+TGG | + | chr3.2:87404200-87404219 | MS.gene072874:intron | 50.0% |
| ! | AAGGCTGTCATGGTCTTGCT+GGG | + | chr3.2:87404201-87404220 | MS.gene072874:intron | 50.0% |
| ! | GGAAAGGCCTTGTCCTACTT+TGG | + | chr3.2:87404233-87404252 | MS.gene072874:intron | 50.0% |
| !! | ATCGACGACTTGGTTGCAAC+AGG | + | chr3.2:87405209-87405228 | MS.gene072874:CDS | 50.0% |
| !! | GTTTGGTTCTGCAGTTGCGT+TGG | + | chr3.2:87403633-87403652 | MS.gene072874:CDS | 50.0% |
| ACAGGTGGAACTTTGTCGGC+AGG | + | chr3.2:87405227-87405246 | MS.gene072874:CDS | 55.0% | |
| ACCAAGGCAGGGTCAGGAAA+AGG | - | chr3.2:87405988-87406007 | None:intergenic | 55.0% | |
| ACGCAAACCTCGCAAGCTAC+CGG | + | chr3.2:87403681-87403700 | MS.gene072874:CDS | 55.0% | |
| CTATAGCCCGTTCACCAGGT+TGG | - | chr3.2:87405187-87405206 | None:intergenic | 55.0% | |
| GAAGTGAGGGACGACTCTGA+TGG | - | chr3.2:87403079-87403098 | None:intergenic | 55.0% | |
| GGATGGCCCATTTGACAACG+GGG | + | chr3.2:87403816-87403835 | MS.gene072874:intron | 55.0% | |
| GGGATGGCCCATTTGACAAC+GGG | + | chr3.2:87403815-87403834 | MS.gene072874:intron | 55.0% | |
| TGCTGGGACTGTGTGTGGAA+AGG | + | chr3.2:87404217-87404236 | MS.gene072874:intron | 55.0% | |
| TTGGATCTCCAGGCACACCA+AGG | - | chr3.2:87406004-87406023 | None:intergenic | 55.0% | |
| ! | TCCTTTTCCTGACCCTGCCT+TGG | + | chr3.2:87405984-87406003 | MS.gene072874:intron | 55.0% |
| !! | AGGGACGACTCTGATGGACT+GGG | - | chr3.2:87403073-87403092 | None:intergenic | 55.0% |
| !! | GACGACTTGGTTGCAACAGG+TGG | + | chr3.2:87405212-87405231 | MS.gene072874:CDS | 55.0% |
| AGTGGAATGCCGCAGCACAG+TGG | - | chr3.2:87405028-87405047 | None:intergenic | 60.0% | |
| ATCTCCAGGCACACCAAGGC+AGG | - | chr3.2:87406000-87406019 | None:intergenic | 60.0% | |
| CGCAAACCTCGCAAGCTACC+GGG | + | chr3.2:87403682-87403701 | MS.gene072874:CDS | 60.0% | |
| CGCTGTCCAACCTGGTGAAC+GGG | + | chr3.2:87405178-87405197 | MS.gene072874:CDS | 60.0% | |
| GCGCTGTCCAACCTGGTGAA+CGG | + | chr3.2:87405177-87405196 | MS.gene072874:CDS | 60.0% | |
| GGCCCATTTGACAACGGGGT+TGG | + | chr3.2:87403820-87403839 | MS.gene072874:intron | 60.0% | |
| GGTCTTGCTGGGACTGTGTG+TGG | + | chr3.2:87404212-87404231 | MS.gene072874:intron | 60.0% | |
| TCTCCAGGCACACCAAGGCA+GGG | - | chr3.2:87405999-87406018 | None:intergenic | 60.0% | |
| ! | GAGGGACGACTCTGATGGAC+TGG | - | chr3.2:87403074-87403093 | None:intergenic | 60.0% |
| ! | GTTGTACCCGGTAGCTTGCG+AGG | - | chr3.2:87403691-87403710 | None:intergenic | 60.0% |
| AGGCACACCAAGGCAGGGTC+AGG | - | chr3.2:87405994-87406013 | None:intergenic | 65.0% | |
| CATGTCGGCGCTGTCCAACC+TGG | + | chr3.2:87405170-87405189 | MS.gene072874:CDS | 65.0% | |
| ! | TGACCCTGCCTTGGTGTGCC+TGG | + | chr3.2:87405993-87406012 | MS.gene072874:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 87403018 | 87406224 | 87403018 | ID=MS.gene072874 |
| chr3.2 | mRNA | 87403018 | 87406224 | 87403018 | ID=MS.gene072874.t1;Parent=MS.gene072874 |
| chr3.2 | exon | 87403018 | 87403108 | 87403018 | ID=MS.gene072874.t1.exon1;Parent=MS.gene072874.t1 |
| chr3.2 | CDS | 87403018 | 87403108 | 87403018 | ID=cds.MS.gene072874.t1;Parent=MS.gene072874.t1 |
| chr3.2 | exon | 87403341 | 87403451 | 87403341 | ID=MS.gene072874.t1.exon2;Parent=MS.gene072874.t1 |
| chr3.2 | CDS | 87403341 | 87403451 | 87403341 | ID=cds.MS.gene072874.t1;Parent=MS.gene072874.t1 |
| chr3.2 | exon | 87403611 | 87403703 | 87403611 | ID=MS.gene072874.t1.exon3;Parent=MS.gene072874.t1 |
| chr3.2 | CDS | 87403611 | 87403703 | 87403611 | ID=cds.MS.gene072874.t1;Parent=MS.gene072874.t1 |
| chr3.2 | exon | 87405114 | 87405263 | 87405114 | ID=MS.gene072874.t1.exon4;Parent=MS.gene072874.t1 |
| chr3.2 | CDS | 87405114 | 87405263 | 87405114 | ID=cds.MS.gene072874.t1;Parent=MS.gene072874.t1 |
| chr3.2 | exon | 87405389 | 87405447 | 87405389 | ID=MS.gene072874.t1.exon5;Parent=MS.gene072874.t1 |
| chr3.2 | CDS | 87405389 | 87405447 | 87405389 | ID=cds.MS.gene072874.t1;Parent=MS.gene072874.t1 |
| chr3.2 | exon | 87406153 | 87406224 | 87406153 | ID=MS.gene072874.t1.exon6;Parent=MS.gene072874.t1 |
| chr3.2 | CDS | 87406153 | 87406224 | 87406153 | ID=cds.MS.gene072874.t1;Parent=MS.gene072874.t1 |
| Gene Sequence |
| Protein sequence |
