AlfalfaGEDB | MS.gene073146

M. sativa cultivar XinJiangDaYe / MS.gene073146

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073146.t1	XP_013464840.1	94.5	310	13	1	3	308	4	313	4.80E-151	543.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073146.t1	Q0V7X4	52.8	326	123	6	1	308	5	317	1.4e-69	264.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073146.t1	A0A072VL86	94.5	310	13	1	3	308	4	313	3.5e-151	543.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene073146.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene055154	MS.gene073146	0.805268	1.45E-49	-1.69E-46
MS.gene055502	MS.gene073146	-0.804104	2.54E-49	-1.69E-46
MS.gene055577	MS.gene073146	-0.801244	9.87E-49	-1.69E-46
MS.gene057768	MS.gene073146	0.801864	7.36E-49	-1.69E-46
MS.gene058603	MS.gene073146	0.833359	5.58E-56	-1.69E-46
MS.gene060087	MS.gene073146	0.807874	4.08E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073146.t1	MTR_2g084280	95.161	310	11	1	3	308	4	313	0.0	606
MS.gene073146.t1	MTR_4g057270	63.804	326	91	10	2	308	16	333	2.73e-129	372
MS.gene073146.t1	MTR_8g064700	33.962	159	84	3	120	264	236	387	8.48e-20	89.4
MS.gene073146.t1	MTR_3g104100	31.771	192	110	4	127	304	194	378	5.98e-18	83.6
MS.gene073146.t1	MTR_3g498695	30.387	181	110	4	88	253	257	436	3.12e-17	82.0
MS.gene073146.t1	MTR_2g038040	25.112	223	127	5	91	295	34	234	3.17e-17	79.7
MS.gene073146.t1	MTR_3g498695	30.387	181	110	4	88	253	257	436	3.18e-17	82.0
MS.gene073146.t1	MTR_1g112680	30.233	172	86	4	116	253	302	473	4.31e-17	82.0
MS.gene073146.t1	MTR_3g030700	29.744	195	116	4	117	297	185	372	7.58e-17	80.5
MS.gene073146.t1	MTR_8g067280	30.864	162	93	5	132	277	466	624	4.52e-15	75.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073146.t1	AT2G28160	52.905	327	121	9	1	308	5	317	2.15e-104	308
MS.gene073146.t1	AT2G28160	52.336	321	120	9	1	302	5	311	2.37e-100	297
MS.gene073146.t1	AT4G29930	32.836	201	119	4	99	299	36	220	2.58e-25	101
MS.gene073146.t1	AT4G29930	32.836	201	116	5	99	299	36	217	2.92e-24	98.6
MS.gene073146.t1	AT5G57150	32.828	198	112	6	110	291	34	226	2.19e-23	96.7
MS.gene073146.t1	AT4G29930	33.333	180	103	5	99	278	36	198	2.93e-23	96.3
MS.gene073146.t1	AT5G57150	31.111	225	128	7	70	278	3	216	3.14e-23	95.9
MS.gene073146.t1	AT5G57150	32.227	211	116	7	70	264	3	202	4.65e-23	95.1
MS.gene073146.t1	AT5G57150	32.381	210	116	7	70	264	3	201	5.50e-23	95.1
MS.gene073146.t1	AT5G57150	32.057	209	119	6	70	264	3	202	5.91e-23	95.9

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Find 57 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAGAAGGAGAAAATGA+TGG	0.542463	2.2:-13417847	MS.gene073146:CDS
AAGTTGAATGCTGAGGTTTC+AGG	0.231415	2.2:-13417316	MS.gene073146:CDS
AATCCAAGCCCTACAACAAT+TGG	0.433423	2.2:-13417898	MS.gene073146:CDS
AATTTGAAGCTATGGGTGGC+TGG	0.562736	2.2:-13416425	MS.gene073146:CDS
AATTTGCAAGAAAATTATCC+AGG	0.484959	2.2:-13417218	MS.gene073146:intron
ACCCTAGGGCTAAAACTGAT+AGG	0.553134	2.2:-13417783	MS.gene073146:CDS
ACCTTCAAAATTTGAAGCTA+TGG	0.386796	2.2:-13416433	MS.gene073146:CDS
ACTAATTACCTTTGTAATGT+TGG	0.365158	2.2:+13417684	None:intergenic
ACTTCCTAGCTTGTGCTTGA+AGG	0.382012	2.2:+13417335	None:intergenic
AGAAGGAGCCAATTGTTGTA+GGG	0.509001	2.2:+13417890	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAAGGACATCGTATAT+AGG	-	chr2.2:13417654-13417673	MS.gene073146:intron	30.0%
ATAATGTGCAATAAAGGAGA+AGG	-	chr2.2:13417821-13417840	MS.gene073146:CDS	30.0%
CAATGAAGCAATCATTGATA+AGG	+	chr2.2:13416510-13416529	None:intergenic	30.0%
GAAGATGCAATATCTAACTT+TGG	-	chr2.2:13416478-13416497	MS.gene073146:intron	30.0%
TCAATGAATTGGATATTGAG+AGG	+	chr2.2:13417974-13417993	None:intergenic	30.0%
TCTGTGTCTGAAAATTATCA+AGG	-	chr2.2:13417243-13417262	MS.gene073146:CDS	30.0%
TTAGACCAACACTTTATAGT+TGG	-	chr2.2:13417705-13417724	MS.gene073146:CDS	30.0%
AAAGGAGAAGGAGAAAATGA+TGG	-	chr2.2:13416673-13416692	MS.gene073146:CDS	35.0%
ATGGATAAGGCCTCTATAAT+TGG	-	chr2.2:13417138-13417157	MS.gene073146:intron	35.0%
CATAATATATGCAAGGTCTG+GGG	-	chr2.2:13417592-13417611	MS.gene073146:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	13416382	13418160	13416382	ID=MS.gene073146
chr2.2	mRNA	13416382	13418160	13416382	ID=MS.gene073146.t1;Parent=MS.gene073146
chr2.2	exon	13417693	13418160	13417693	ID=MS.gene073146.t1.exon1;Parent=MS.gene073146.t1
chr2.2	CDS	13417693	13418160	13417693	ID=cds.MS.gene073146.t1;Parent=MS.gene073146.t1
chr2.2	exon	13417219	13417404	13417219	ID=MS.gene073146.t1.exon2;Parent=MS.gene073146.t1
chr2.2	CDS	13417219	13417404	13417219	ID=cds.MS.gene073146.t1;Parent=MS.gene073146.t1
chr2.2	exon	13416590	13416763	13416590	ID=MS.gene073146.t1.exon3;Parent=MS.gene073146.t1
chr2.2	CDS	13416590	13416763	13416590	ID=cds.MS.gene073146.t1;Parent=MS.gene073146.t1
chr2.2	exon	13416382	13416480	13416382	ID=MS.gene073146.t1.exon4;Parent=MS.gene073146.t1
chr2.2	CDS	13416382	13416480	13416382	ID=cds.MS.gene073146.t1;Parent=MS.gene073146.t1

Gene Sequence

>MS.gene073146

ATGGACTCACTAGAGAACACCAATAACTTTGAGCTGCATGACTTCATTGACGATCCAAACTTTGATCAATTTATCGATTTAATTCGAGGTGAACATGAAGATGCAATATCTAACTTTGGTTCTGACCTTATCAATGATTGCTTCATTGATAATAACATAAACCAACTTCTTTCAATTCCTCCAAACCCATCATTTGATCACCACAACAATATTATTAATAATAATCTTGTTAATGAGTATAATCCAAGCCCTACAACAATTGGCTCCTTCTCTTATTATGATGGAGAGGTTAAAGGAGAAGGAGAAAATGATGGAGGTGGTTCTTCTGCAACAACAACAACGATCGATGATGCCAACCCTAGGGCTAAAACTGATAGGTCCAAGACTCTCATTTCTGAGAGGAGAAGGAGAGGAAGGATGAAGGATAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATTACAAAGGTAATTAGTGTCCTTTATTTCGATTAATTTCGAACTCTAGAACTCTTGCTCTTGCATAAAACTCATGTAGTGTCCCTTAAAAACTAATTATAATTAGTGTCCCTTAAGTTGCAAATGTAAAGTTGCAAAGATATAATTTTGGTTAAACATTTATAGATTTTTTTTTTTTTTTTGCACTAGAGGTTAGGGTTGCTACTTTTAAGTTTTCAATATGATATGCTTGATATTAATTTGAGGATGAAAAGTGTAATGTAATTGATATACTTATATTTATATATCCACATACAGATGGATAAGGCCTCTATAATTGGAGATGCAGTATCATATGTGCATGACCTTCAAGCACAAGCTAGGAAGTTGAATGCTGAGGTTTCAGGACTTGAAGCATCTTTATCTGTGTCTGAAAATTATCAAGGATCAATTAGTAACACCATTAATGTTCAAAGCCATCCAATTTGCAAGAAAATTATCCAGGTTTGTTTAATTTTTCATTTCACATTCTAGTTTTTTTTTTTTTTTTTTTAGATCCAAGTTATAATTTCATGAGTCTATAAATCCATATAATAAAGAAAAAACTTTACAAGCATTTTTTTTTCTTTTACAAGACTCAAACTCTAAACCTTATCTTAAACCAACATTTTTTCTTAACGACAAAATTTATTAATAACCAAGTCTCTGCACAAGACGAATAGAAACCAATAAGATAGTCCCCGTGAGCTTAACTCAGTTGGTAAGGACAGTGCATAATATATGCAAGGTCTGGGGTTCGAACCCTGGACACCACCAAAAAAGATAGAAAATTACAAACAAAGGACATCGTATATAGGCGGAACACACAACAGAAAACTCGTTATCTTAGACCAACACTTTATAGTTGGTTTTTCAATGTATCGTACACAATTATAATAGTTGTGCATTATGCTATGTAGATGGACATGTTTCAAGTAGAGGAAAGAGGTTATTATGCAAAAATAATGTGCAATAAAGGAGAAGGAGTAGCTGCTTCATTGTACAAGGCTCTTGAGTCTCTTGCAAATTTCAATGTGCAAAATTCAAACTTAGCTACAGTTTGTGACACTTTTCTACTTACATTTACATTGAATGTAAGTTATTATTATTAGCCTCTCAATATCCAATTCATTGATTAATGATTAGGGTTATTGATGTTTTTGCTTAAGGATTAATTAGTCATTGATGTGTTGAAAAATATAGGTAAACGGTTCTGAACCAGAAATGAACCTTCAAAATTTGAAGCTATGGGTGGCTGGTGCTCTTTTGAACCAAGGCTTTGAATTCATGCCATCATTTTGA

Protein sequence

>MS.gene073146.t1

MDSLENTNNFELHDFIDDPNFDQFIDLIRGEHEDAISNFGSDLINDCFIDNNINQLLSIPPNPSFDHHNNIINNNLVNEYNPSPTTIGSFSYYDGEVKGEGENDGGGSSATTTTIDDANPRAKTDRSKTLISERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQARKLNAEVSGLEASLSVSENYQGSISNTINVQSHPICKKIIQMDMFQVEERGYYAKIMCNKGEGVAASLYKALESLANFNVQNSNLATVCDTFLLTFTLNVNGSEPEMNLQNLKLWVAGALLNQGFEFMPSF