AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055154


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055154.t1 MTR_7g065260 95.111 225 11 0 1 225 8 232 5.63e-148 411
MS.gene055154.t1 MTR_7g065590 78.222 225 48 1 1 225 1 224 3.85e-124 351
MS.gene055154.t1 MTR_7g065600 76.000 225 53 1 1 225 1 224 1.88e-121 344
MS.gene055154.t1 MTR_7g065230 78.222 225 43 2 1 225 1 219 6.57e-121 342
MS.gene055154.t1 MTR_7g065290 75.556 225 54 1 1 225 1 224 6.35e-120 340
MS.gene055154.t1 MTR_7g065270 73.778 225 58 1 1 225 1 224 2.56e-115 328
MS.gene055154.t1 MTR_7g065265 74.222 225 57 1 1 225 1 224 9.22e-115 327
MS.gene055154.t1 MTR_7g065720 65.929 226 75 2 1 225 1 225 3.00e-105 303
MS.gene055154.t1 MTR_7g065660 66.372 226 74 2 1 225 1 225 4.70e-105 302
MS.gene055154.t1 MTR_7g065750 62.389 226 84 1 1 225 1 226 6.17e-99 287
MS.gene055154.t1 MTR_4g019790 60.714 224 87 1 1 224 1 223 3.79e-98 285
MS.gene055154.t1 MTR_7g065630 63.393 224 77 2 1 224 19 237 4.78e-96 280
MS.gene055154.t1 MTR_7g065740 58.667 225 91 2 1 224 1 224 1.74e-95 278
MS.gene055154.t1 MTR_7g065640 61.062 226 68 3 1 225 1 207 1.96e-91 267
MS.gene055154.t1 MTR_4g019780 59.174 218 87 2 3 219 4 220 6.04e-87 256
MS.gene055154.t1 MTR_7g065710 62.312 199 71 1 8 206 5 199 4.80e-84 249
MS.gene055154.t1 MTR_7g065680 61.435 223 81 2 1 223 1 218 5.81e-82 244
MS.gene055154.t1 MTR_7g065700 63.107 206 72 1 1 206 1 202 4.12e-79 237
MS.gene055154.t1 MTR_3g099757 48.869 221 110 3 5 224 3 221 5.36e-60 188
MS.gene055154.t1 MTR_6g080440 45.045 222 118 3 7 225 3 223 6.20e-58 183
MS.gene055154.t1 MTR_1g115195 45.045 222 111 3 7 221 3 220 1.38e-57 182
MS.gene055154.t1 MTR_1g090150 45.249 221 115 4 6 223 2 219 3.74e-57 181
MS.gene055154.t1 MTR_8g087425 44.651 215 117 2 4 217 2 215 1.15e-56 179
MS.gene055154.t1 MTR_8g087410 46.222 225 108 5 1 219 1 218 7.43e-56 177
MS.gene055154.t1 MTR_1g090070 44.144 222 118 4 7 224 9 228 2.43e-52 169
MS.gene055154.t1 MTR_5g040430 42.009 219 118 4 1 212 1 217 2.62e-51 166
MS.gene055154.t1 MTR_1g090090 43.868 212 112 5 7 214 3 211 2.19e-50 164
MS.gene055154.t1 MTR_5g037380 45.540 213 104 5 1 204 1 210 1.77e-49 161
MS.gene055154.t1 MTR_8g061950 42.986 221 115 6 5 216 3 221 6.88e-49 160
MS.gene055154.t1 MTR_1g090060 42.035 226 118 6 7 225 3 222 2.65e-48 158
MS.gene055154.t1 MTR_4g059730 41.935 217 115 6 6 216 3 214 1.15e-47 156
MS.gene055154.t1 MTR_1g090100 41.892 222 120 7 8 224 3 220 1.47e-47 156
MS.gene055154.t1 MTR_3g467420 45.026 191 100 4 16 204 18 205 3.84e-40 137
MS.gene055154.t1 MTR_2g070200 40.000 210 122 3 6 213 3 210 6.26e-40 137
MS.gene055154.t1 MTR_2g070130 39.320 206 110 6 6 204 3 200 4.53e-38 132
MS.gene055154.t1 MTR_4g124130 44.271 192 95 7 6 191 3 188 6.43e-38 131
MS.gene055154.t1 MTR_2g070150 38.725 204 114 5 6 204 3 200 8.66e-38 130
MS.gene055154.t1 MTR_3g467430 41.379 203 114 5 4 204 6 205 1.92e-37 130
MS.gene055154.t1 MTR_2g070120 39.683 189 107 5 6 191 3 187 3.06e-36 127
MS.gene055154.t1 MTR_8g056940 38.350 206 122 4 6 209 3 205 6.28e-36 126
MS.gene055154.t1 MTR_2g070140 39.153 189 104 5 21 204 2 184 1.97e-35 124
MS.gene055154.t1 MTR_2g070180 38.220 191 113 4 16 204 13 200 4.20e-35 124
MS.gene055154.t1 MTR_2g070210 39.901 203 115 5 6 204 3 202 1.72e-34 122
MS.gene055154.t1 MTR_2g070070 37.073 205 124 4 7 209 4 205 4.11e-33 119
MS.gene055154.t1 MTR_5g076900 38.860 193 111 5 15 204 14 202 9.74e-33 118
MS.gene055154.t1 MTR_2g070060 37.624 202 121 4 7 206 4 202 1.20e-32 118
MS.gene055154.t1 MTR_0186s0030 43.796 137 70 2 6 135 3 139 1.25e-29 107
MS.gene055154.t1 MTR_2g070110 35.678 199 106 5 16 204 13 199 1.36e-26 102
MS.gene055154.t1 MTR_2g072120 48.276 58 29 1 51 107 2 59 2.19e-13 63.5
MS.gene055154.t1 MTR_4g134370 29.204 226 130 9 1 204 1 218 5.47e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055154.t1 AT2G29420 50.000 220 107 3 3 221 5 222 1.40e-67 207
MS.gene055154.t1 AT3G09270 47.556 225 113 5 3 224 2 224 1.92e-64 199
MS.gene055154.t1 AT2G29490 49.038 208 103 3 1 206 1 207 2.75e-56 179
MS.gene055154.t1 AT2G29480 47.596 208 106 3 1 206 1 207 3.88e-55 176
MS.gene055154.t1 AT2G29460 46.226 212 111 3 1 210 1 211 5.33e-55 175
MS.gene055154.t1 AT2G29450 45.946 222 114 3 3 218 2 223 5.39e-55 175
MS.gene055154.t1 AT2G29470 46.411 209 108 4 1 206 1 208 5.75e-52 167
MS.gene055154.t1 AT1G69930 41.818 220 121 3 2 215 7 225 5.38e-51 166
MS.gene055154.t1 AT1G10370 43.868 212 108 5 1 204 1 209 3.93e-49 160
MS.gene055154.t1 AT1G59700 45.887 231 111 8 5 223 4 232 8.81e-49 160
MS.gene055154.t1 AT2G29440 45.192 208 110 4 1 206 1 206 1.16e-48 159
MS.gene055154.t1 AT1G59670 44.498 209 106 5 5 204 4 211 2.58e-47 156
MS.gene055154.t1 AT5G62480 42.009 219 113 5 10 215 11 228 9.83e-45 150
MS.gene055154.t1 AT1G10360 38.073 218 125 5 6 215 4 219 2.15e-44 148
MS.gene055154.t1 AT1G69920 38.991 218 123 5 1 208 26 243 2.96e-44 149
MS.gene055154.t1 AT1G27130 37.778 225 130 5 1 217 1 223 8.20e-44 147
MS.gene055154.t1 AT1G78370 42.932 191 104 4 16 204 13 200 3.13e-43 145
MS.gene055154.t1 AT1G78380 42.000 200 111 4 7 204 4 200 4.09e-42 142
MS.gene055154.t1 AT1G78320 43.564 202 109 4 5 204 2 200 5.10e-42 142
MS.gene055154.t1 AT1G74590 37.229 231 136 5 1 224 1 229 3.14e-41 140
MS.gene055154.t1 AT1G78340 43.103 174 96 3 6 177 3 175 7.33e-40 136
MS.gene055154.t1 AT1G53680 41.451 193 108 4 15 204 15 205 9.29e-38 131
MS.gene055154.t1 AT1G27140 35.681 213 127 4 1 204 1 212 5.58e-37 130
MS.gene055154.t1 AT1G17170 38.813 219 127 6 6 222 3 216 9.38e-37 128
MS.gene055154.t1 AT1G17180 38.806 201 118 4 6 204 3 200 1.38e-34 123
MS.gene055154.t1 AT1G17190 42.135 178 98 4 16 191 14 188 2.11e-34 122
MS.gene055154.t1 AT3G43800 36.493 211 125 6 4 208 2 209 4.65e-32 117
MS.gene055154.t1 AT1G78360 38.308 201 118 5 7 204 4 201 1.33e-31 115
MS.gene055154.t1 AT5G62480 33.486 218 107 5 10 215 11 202 4.17e-27 103
MS.gene055154.t1 AT5G62480 33.486 218 106 5 10 215 11 201 8.20e-27 102
MS.gene055154.t1 AT1G78320 36.000 200 98 4 6 204 3 173 2.42e-25 98.6
MS.gene055154.t1 AT2G02390 28.037 214 135 5 3 204 4 210 1.11e-12 65.5
MS.gene055154.t1 AT2G02390 26.754 228 127 6 3 204 4 217 1.16e-11 62.4
MS.gene055154.t1 AT2G02380 26.887 212 136 5 5 204 9 213 2.51e-11 61.6

Find 43 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAGCCTTGGCACGTTTC+TGG 0.188650 7.4:+39423932 MS.gene055154:CDS
CAAGGATCTGAAGGCAATAT+TGG 0.242620 7.4:-39423907 None:intergenic
ATTGGCCTTGTTGACATTAC+TGG 0.271417 7.4:+39424902 MS.gene055154:CDS
ACAGGAACTTTCTTATAAAC+AGG 0.283283 7.4:-39423808 None:intergenic
GAGCTCAAAGACAAGTTCTT+TGG 0.355329 7.4:+39424869 MS.gene055154:CDS
CTCCACGATGGCATCAAATA+AGG 0.366405 7.4:+39423648 None:intergenic
TGGCTCCAATTGAATAACTT+TGG 0.369360 7.4:-39424998 None:intergenic
TACTTTATCATCTATGAACT+TGG 0.387024 7.4:-39423956 None:intergenic
CCTGTTACTTCTTCTACAAT+GGG 0.411122 7.4:-39424947 None:intergenic
AATTTCCAAAGTTATTCAAT+TGG 0.415545 7.4:+39424993 MS.gene055154:CDS
ATCTCTACCCTGCACACAAA+TGG 0.417885 7.4:-39423703 None:intergenic
TTGGGTGGTTATTGAAGTCT+TGG 0.422102 7.4:-39425018 None:intergenic
TCCTAGACTAGAAACCCTTT+TGG 0.422199 7.4:+39425060 MS.gene055154:CDS
TCCTGTTACTTCTTCTACAA+TGG 0.424084 7.4:-39424948 None:intergenic
ATCACAAGGGATTCTGATAT+AGG 0.433145 7.4:-39423850 None:intergenic
TTCTTTGGTGGAGAAGAGAT+TGG 0.437865 7.4:+39424884 MS.gene055154:CDS
CCCATTGTAGAAGAAGTAAC+AGG 0.460334 7.4:+39424947 MS.gene055154:CDS
GAGATCTTTCGAAGGCCAAA+AGG 0.460962 7.4:-39425075 None:intergenic
AGAGATTGAGAAGGGTATTG+AGG 0.468601 7.4:+39424814 MS.gene055154:CDS
AGGCAAGTCCATTTGTGTGC+AGG 0.494329 7.4:+39423695 MS.gene055154:CDS
CTCAAAGACAAGTTCTTTGG+TGG 0.495298 7.4:+39424872 MS.gene055154:CDS
TTGAGTATATTGATGAGACT+TGG 0.504629 7.4:+39423875 MS.gene055154:CDS
AGGAGTTGAATACAAATATG+AGG 0.510242 7.4:+39423741 MS.gene055154:CDS
TTATCATTATGAACTAATAC+AGG 0.517988 7.4:-39423826 None:intergenic
AGATCCTTGTAAAAGAGCCT+TGG 0.519646 7.4:+39423921 MS.gene055154:CDS
AGTGGCTCTTCAATTTCTTG+AGG 0.526966 7.4:+39424844 MS.gene055154:CDS
GCCAAAAGGGTTTCTAGTCT+AGG 0.536473 7.4:-39425061 None:intergenic
GATGAGAAAGAGATTGAGAA+GGG 0.537394 7.4:+39424806 MS.gene055154:CDS
AGATCTTTCGAAGGCCAAAA+GGG 0.542519 7.4:-39425074 None:intergenic
GGCAAGTCCATTTGTGTGCA+GGG 0.544381 7.4:+39423696 MS.gene055154:CDS
CAGGAACTTTCTTATAAACA+GGG 0.564477 7.4:-39423807 None:intergenic
GAGATTGCTCTAAAACTGAA+AGG 0.570349 7.4:+39423721 MS.gene055154:CDS
TGATGAGAAAGAGATTGAGA+AGG 0.573160 7.4:+39424805 MS.gene055154:CDS
AATCTCTTTCTCATCAAGAG+TGG 0.590956 7.4:-39424798 None:intergenic
CAATATACTCAAGAATCACA+AGG 0.601780 7.4:-39423864 None:intergenic
CAATAACCACCCAATTGTCA+AGG 0.611678 7.4:+39425027 MS.gene055154:CDS
TTCAGAACGAGATCTTTCGA+AGG 0.621786 7.4:-39425083 None:intergenic
GGGTATTGAGGAAACAGAAG+TGG 0.632493 7.4:+39424826 MS.gene055154:CDS
AAAAGGGTTTCTAGTCTAGG+AGG 0.639156 7.4:-39425058 None:intergenic
AATATACTCAAGAATCACAA+GGG 0.678725 7.4:-39423863 None:intergenic
CTTGGACCAGAAACGTGCCA+AGG 0.686787 7.4:-39423938 None:intergenic
AGACTCCAGTAATGTCAACA+AGG 0.694962 7.4:-39424907 None:intergenic
CTGTTACTTCTTCTACAATG+GGG 0.700401 7.4:-39424946 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGATTAAAATATATTTAA+GGG - chr7.4:39424436-39424455 None:intergenic 10.0%
!! TTATTTAACCAAAAAAATTA+TGG - chr7.4:39424404-39424423 None:intergenic 10.0%
!! GAAGGATTAAAATATATTTA+AGG - chr7.4:39424437-39424456 None:intergenic 15.0%
!!! AATTTTTCATTCATGAAATT+AGG + chr7.4:39424489-39424508 MS.gene055154:intron 15.0%
!!! ATGAATGAAAAATTTTAGAA+GGG - chr7.4:39424483-39424502 None:intergenic 15.0%
!!! CCTCTAAAAAAATAAAAATA+GGG - chr7.4:39424666-39424685 None:intergenic 15.0%
!!! TAAAATATTTCTTAGACTTT+TGG + chr7.4:39424457-39424476 MS.gene055154:intron 15.0%
!!! TCCTCTAAAAAAATAAAAAT+AGG - chr7.4:39424667-39424686 None:intergenic 15.0%
!! AATTTCCAAAGTTATTCAAT+TGG + chr7.4:39424993-39425012 MS.gene055154:CDS 20.0%
!! TTATCATTATGAACTAATAC+AGG - chr7.4:39423829-39423848 None:intergenic 20.0%
!!! AGTCTAAGAAATATTTTAGA+AGG - chr7.4:39424455-39424474 None:intergenic 20.0%
!!! CATGAATGAAAAATTTTAGA+AGG - chr7.4:39424484-39424503 None:intergenic 20.0%
!!! CCCTATTTTTATTTTTTTAG+AGG + chr7.4:39424663-39424682 MS.gene055154:intron 20.0%
!!! TCATGGATGAAATTTTTTTA+GGG + chr7.4:39424563-39424582 MS.gene055154:intron 20.0%
!!! TTCATGGATGAAATTTTTTT+AGG + chr7.4:39424562-39424581 MS.gene055154:intron 20.0%
!!! TTGTTTTAACTAAAAACACA+CGG + chr7.4:39424287-39424306 MS.gene055154:intron 20.0%
! AAAAGCCTAAGAAATATTCT+AGG + chr7.4:39424589-39424608 MS.gene055154:intron 25.0%
! AATAGGGTTAAATAAGCAAA+TGG - chr7.4:39424650-39424669 None:intergenic 25.0%
! AATATACTCAAGAATCACAA+GGG - chr7.4:39423866-39423885 None:intergenic 25.0%
! AATCAAACGTTCGTATATTT+AGG + chr7.4:39424620-39424639 MS.gene055154:intron 25.0%
! TACTTTATCATCTATGAACT+TGG - chr7.4:39423959-39423978 None:intergenic 25.0%
!! TAATTTTGCTTTGTGTAACT+CGG + chr7.4:39424001-39424020 MS.gene055154:intron 25.0%
!! TAGAATATTTCTTAGGCTTT+TGG - chr7.4:39424590-39424609 None:intergenic 25.0%
AACCAAAAAAATTATGGACC+AGG - chr7.4:39424398-39424417 None:intergenic 30.0%
ACAGGAACTTTCTTATAAAC+AGG - chr7.4:39423811-39423830 None:intergenic 30.0%
AGAGTTACATGGAAAATACT+TGG - chr7.4:39424181-39424200 None:intergenic 30.0%
AGGAGTTGAATACAAATATG+AGG + chr7.4:39423741-39423760 MS.gene055154:CDS 30.0%
ATATATTGTCACACAACATG+TGG + chr7.4:39424077-39424096 MS.gene055154:intron 30.0%
ATCCTCCTAGAATATTTCTT+AGG - chr7.4:39424597-39424616 None:intergenic 30.0%
CAATATACTCAAGAATCACA+AGG - chr7.4:39423867-39423886 None:intergenic 30.0%
CAGGAACTTTCTTATAAACA+GGG - chr7.4:39423810-39423829 None:intergenic 30.0%
GAGTTACATGGAAAATACTT+GGG - chr7.4:39424180-39424199 None:intergenic 30.0%
GATGTTCATCTCAAATCAAA+TGG - chr7.4:39424326-39424345 None:intergenic 30.0%
TATATTGTCACACAACATGT+GGG + chr7.4:39424078-39424097 MS.gene055154:intron 30.0%
TTGAGTATATTGATGAGACT+TGG + chr7.4:39423875-39423894 MS.gene055154:CDS 30.0%
! AAAAATTATGGACCAGGTTT+TGG - chr7.4:39424392-39424411 None:intergenic 30.0%
! AATTTTGCTTTGTGTAACTC+GGG + chr7.4:39424002-39424021 MS.gene055154:intron 30.0%
! GCAAATTTTCCTTGACAATT+GGG - chr7.4:39425039-39425058 None:intergenic 30.0%
!!! AACCTGGTCCATAATTTTTT+TGG + chr7.4:39424393-39424412 MS.gene055154:intron 30.0%
AACAGCAGATGCTAAATTCA+TGG + chr7.4:39424546-39424565 MS.gene055154:intron 35.0%
AATCTCTTTCTCATCAAGAG+TGG - chr7.4:39424801-39424820 None:intergenic 35.0%
AGCCTAAGAAATATTCTAGG+AGG + chr7.4:39424592-39424611 MS.gene055154:intron 35.0%
ATCACAAGGGATTCTGATAT+AGG - chr7.4:39423853-39423872 None:intergenic 35.0%
GATGAGAAAGAGATTGAGAA+GGG + chr7.4:39424806-39424825 MS.gene055154:CDS 35.0%
GTCACCGTGATATTAAATCT+GGG + chr7.4:39424045-39424064 MS.gene055154:intron 35.0%
GTGTGACAATATATGTTGTG+TGG - chr7.4:39424071-39424090 None:intergenic 35.0%
TGATGAGAAAGAGATTGAGA+AGG + chr7.4:39424805-39424824 MS.gene055154:CDS 35.0%
TGGCTCCAATTGAATAACTT+TGG - chr7.4:39425001-39425020 None:intergenic 35.0%
TGTCACCGTGATATTAAATC+TGG + chr7.4:39424044-39424063 MS.gene055154:intron 35.0%
! AAGGAAGAGTTGAAGCTTTT+TGG + chr7.4:39423667-39423686 MS.gene055154:CDS 35.0%
! AATTTTACAGCACCAAAACC+TGG + chr7.4:39424377-39424396 MS.gene055154:intron 35.0%
! AATTTTCCTTGACAATTGGG+TGG - chr7.4:39425036-39425055 None:intergenic 35.0%
! ACCACTAGTCTCACAAATTA+AGG - chr7.4:39424754-39424773 None:intergenic 35.0%
! CACAACACAACACTTTTATG+TGG + chr7.4:39424122-39424141 MS.gene055154:intron 35.0%
! CCTGTTACTTCTTCTACAAT+GGG - chr7.4:39424950-39424969 None:intergenic 35.0%
! CTGTTACTTCTTCTACAATG+GGG - chr7.4:39424949-39424968 None:intergenic 35.0%
! GAAGTTGGATTAGAGTTACA+TGG - chr7.4:39424192-39424211 None:intergenic 35.0%
! GGCAAATTTTCCTTGACAAT+TGG - chr7.4:39425040-39425059 None:intergenic 35.0%
! TAATTTGTGAGACTAGTGGT+TGG + chr7.4:39424754-39424773 MS.gene055154:intron 35.0%
! TCACACACACACACAATTTT+TGG + chr7.4:39424210-39424229 MS.gene055154:intron 35.0%
! TCCTGTTACTTCTTCTACAA+TGG - chr7.4:39424951-39424970 None:intergenic 35.0%
!! ACCTTAATTTGTGAGACTAG+TGG + chr7.4:39424750-39424769 MS.gene055154:intron 35.0%
!! CATAAAAGTGTTGTGTTGTG+TGG - chr7.4:39424122-39424141 None:intergenic 35.0%
!! GAGATTGCTCTAAAACTGAA+AGG + chr7.4:39423721-39423740 MS.gene055154:CDS 35.0%
!!! ACACACACAATTTTTGGAAC+AGG + chr7.4:39424216-39424235 MS.gene055154:intron 35.0%
!!! GTTGAAGCTTTTTGGAATGA+AGG + chr7.4:39423675-39423694 MS.gene055154:CDS 35.0%
AATTAGAGAGAGAGAGAGAG+AGG - chr7.4:39423986-39424005 None:intergenic 40.0%
AATTAGCACACAGTTTCACG+CGG - chr7.4:39424361-39424380 None:intergenic 40.0%
AGACTCCAGTAATGTCAACA+AGG - chr7.4:39424910-39424929 None:intergenic 40.0%
AGATCCTTGTAAAAGAGCCT+TGG + chr7.4:39423921-39423940 MS.gene055154:CDS 40.0%
AGATCTTTCGAAGGCCAAAA+GGG - chr7.4:39425077-39425096 None:intergenic 40.0%
AGTGGCTCTTCAATTTCTTG+AGG + chr7.4:39424844-39424863 MS.gene055154:CDS 40.0%
ATTGTGTGTGTGTGTGAAGT+TGG - chr7.4:39424207-39424226 None:intergenic 40.0%
CAAGGATCTGAAGGCAATAT+TGG - chr7.4:39423910-39423929 None:intergenic 40.0%
CAATAACCACCCAATTGTCA+AGG + chr7.4:39425027-39425046 MS.gene055154:CDS 40.0%
CCCATTGTAGAAGAAGTAAC+AGG + chr7.4:39424947-39424966 MS.gene055154:CDS 40.0%
CTCAAAGACAAGTTCTTTGG+TGG + chr7.4:39424872-39424891 MS.gene055154:CDS 40.0%
GAGCTCAAAGACAAGTTCTT+TGG + chr7.4:39424869-39424888 MS.gene055154:CDS 40.0%
GTGCTCTGATCACAATTGAA+AGG + chr7.4:39424258-39424277 MS.gene055154:intron 40.0%
GTGGCCCAGATTTAATATCA+CGG - chr7.4:39424052-39424071 None:intergenic 40.0%
TTCAGAACGAGATCTTTCGA+AGG - chr7.4:39425086-39425105 None:intergenic 40.0%
TTCTTTGGTGGAGAAGAGAT+TGG + chr7.4:39424884-39424903 MS.gene055154:CDS 40.0%
TTGGGTGGTTATTGAAGTCT+TGG - chr7.4:39425021-39425040 None:intergenic 40.0%
! CTGGAGTCTTCGTATCTTTT+TGG + chr7.4:39424921-39424940 MS.gene055154:CDS 40.0%
! GCTCTTTTACAAGGATCTGA+AGG - chr7.4:39423919-39423938 None:intergenic 40.0%
! TCCTAGACTAGAAACCCTTT+TGG + chr7.4:39425060-39425079 MS.gene055154:CDS 40.0%
!! AAAAGGGTTTCTAGTCTAGG+AGG - chr7.4:39425061-39425080 None:intergenic 40.0%
!! AGAGATTGAGAAGGGTATTG+AGG + chr7.4:39424814-39424833 MS.gene055154:CDS 40.0%
!! ATTGGCCTTGTTGACATTAC+TGG + chr7.4:39424902-39424921 MS.gene055154:CDS 40.0%
ATCTCTACCCTGCACACAAA+TGG - chr7.4:39423706-39423725 None:intergenic 45.0%
GAGATCTTTCGAAGGCCAAA+AGG - chr7.4:39425078-39425097 None:intergenic 45.0%
GTCACCGTGACATTATGTCT+GGG - chr7.4:39424148-39424167 None:intergenic 45.0%
TGTCACCGTGACATTATGTC+TGG - chr7.4:39424149-39424168 None:intergenic 45.0%
!! GCCAAAAGGGTTTCTAGTCT+AGG - chr7.4:39425064-39425083 None:intergenic 45.0%
!! GGGTATTGAGGAAACAGAAG+TGG + chr7.4:39424826-39424845 MS.gene055154:CDS 45.0%
AAAGAGCCTTGGCACGTTTC+TGG + chr7.4:39423932-39423951 MS.gene055154:CDS 50.0%
AGGATTCCTGCTGTTACAGC+AGG + chr7.4:39424236-39424255 MS.gene055154:intron 50.0%
AGGCAAGTCCATTTGTGTGC+AGG + chr7.4:39423695-39423714 MS.gene055154:CDS 50.0%
GGCAAGTCCATTTGTGTGCA+GGG + chr7.4:39423696-39423715 MS.gene055154:CDS 50.0%
GTGGCCCAGACATAATGTCA+CGG + chr7.4:39424141-39424160 MS.gene055154:intron 50.0%
! CGTGCCAAGGCTCTTTTACA+AGG - chr7.4:39423928-39423947 None:intergenic 50.0%
!! GTGTAACTCGGGAAGCACTT+GGG + chr7.4:39424013-39424032 MS.gene055154:intron 50.0%
!! TGTGTAACTCGGGAAGCACT+TGG + chr7.4:39424012-39424031 MS.gene055154:intron 50.0%
CTTGGACCAGAAACGTGCCA+AGG - chr7.4:39423941-39423960 None:intergenic 55.0%
GTGGGCCACACAACACATCT+GGG + chr7.4:39424096-39424115 MS.gene055154:intron 55.0%
TGTGGCCCAGATGTGTTGTG+TGG - chr7.4:39424104-39424123 None:intergenic 55.0%
TGTGGGCCACACAACACATC+TGG + chr7.4:39424095-39424114 MS.gene055154:intron 55.0%
! AGAGCACCTGCTGTAACAGC+AGG - chr7.4:39424245-39424264 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 39423655 39425126 39423655 ID=MS.gene055154
chr7.4 mRNA 39423655 39425126 39423655 ID=MS.gene055154.t1;Parent=MS.gene055154
chr7.4 exon 39423655 39423975 39423655 ID=MS.gene055154.t1.exon1;Parent=MS.gene055154.t1
chr7.4 CDS 39423655 39423975 39423655 ID=cds.MS.gene055154.t1;Parent=MS.gene055154.t1
chr7.4 exon 39424770 39425126 39424770 ID=MS.gene055154.t1.exon2;Parent=MS.gene055154.t1
chr7.4 CDS 39424770 39425126 39424770 ID=cds.MS.gene055154.t1;Parent=MS.gene055154.t1
Gene Sequence

>MS.gene055154

ATGGCATCAAATAAGGAAGAGTTGAAGCTTTTTGGAATGAAGGCAAGTCCATTTGTGTGCAGGGTAGAGATTGCTCTAAAACTGAAAGGAGTTGAATACAAATATGAGGTAGAAAAGTTTAAGAACTTGAGTGATACACTCATCAATTACAACCCTGTTTATAAGAAAGTTCCTGTATTAGTTCATAATGATAAGCCTATATCAGAATCCCTTGTGATTCTTGAGTATATTGATGAGACTTGGAAACAAAATCCAATATTGCCTTCAGATCCTTGTAAAAGAGCCTTGGCACGTTTCTGGTCCAAGTTCATAGATGATAAAGTAATTACCTCTCTCTCTCTCTCTCTAATTTTGCTTTGTGTAACTCGGGAAGCACTTGGGTGACATAATGTCACCGTGATATTAAATCTGGGCCACACAACATATATTGTCACACAACATGTGGGCCACACAACACATCTGGGCCACACAACACAACACTTTTATGTGGCCCAGACATAATGTCACGGTGACATTATGTCACCCAAGTATTTTCCATGTAACTCTAATCCAACTTCACACACACACACAATTTTTGGAACAGGATTCCTGCTGTTACAGCAGGTGCTCTGATCACAATTGAAAGGTCAAGATTGTTTTAACTAAAAACACACGGTTTTCAATCTCAACCATTTGATTTGAGATGAACATCTGAGATTGAAAACCGCGTGAAACTGTGTGCTAATTTTACAGCACCAAAACCTGGTCCATAATTTTTTTGGTTAAATAAGTAAATAATCCCTTAAATATATTTTAATCCTTCTAAAATATTTCTTAGACTTTTGGCCCTTCTAAAATTTTTCATTCATGAAATTAGGCTCTGCTATACGTTGAGTATTACACTATTTTTTTAACAGCAGATGCTAAATTCATGGATGAAATTTTTTTAGGGACCAAAAGCCTAAGAAATATTCTAGGAGGATTAAAATCAAACGTTCGTATATTTAGGAGAGCCATTTGCTTATTTAACCCTATTTTTATTTTTTTAGAGGATATACATGCATACATATACATGTATAATATAATTTTAATATTTATGATTTTAATAATTATATTACCTTAATTTGTGAGACTAGTGGTTGGATGCTATAATAAAAGTTTCTTCCACTCTTGATGAGAAAGAGATTGAGAAGGGTATTGAGGAAACAGAAGTGGCTCTTCAATTTCTTGAGGATGAGCTCAAAGACAAGTTCTTTGGTGGAGAAGAGATTGGCCTTGTTGACATTACTGGAGTCTTCGTATCTTTTTGGCTCCCCATTGTAGAAGAAGTAACAGGACTGAAGTTGTTCACTAGTGAGAAATTTCCAAAGTTATTCAATTGGAGCCAAGACTTCAATAACCACCCAATTGTCAAGGAAAATTTGCCTCCTAGACTAGAAACCCTTTTGGCCTTCGAAAGATCTCGTTCTGAAAGTCTTGCTGCTTCAAAATAA

Protein sequence

>MS.gene055154.t1

MASNKEELKLFGMKASPFVCRVEIALKLKGVEYKYEVEKFKNLSDTLINYNPVYKKVPVLVHNDKPISESLVILEYIDETWKQNPILPSDPCKRALARFWSKFIDDKWLDAIIKVSSTLDEKEIEKGIEETEVALQFLEDELKDKFFGGEEIGLVDITGVFVSFWLPIVEEVTGLKLFTSEKFPKLFNWSQDFNNHPIVKENLPPRLETLLAFERSRSESLAASK