AlfalfaGEDB | MS.gene073927

M. sativa cultivar XinJiangDaYe / MS.gene073927

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073927.t1	XP_003590175.2	94.5	145	8	0	1	145	152	296	1.70E-66	261.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073927.t1	G7I6P2	94.5	145	8	0	1	145	152	296	1.2e-66	261.9

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050507	MS.gene073927	0.856457	3.18E-62	-1.69E-46
MS.gene051617	MS.gene073927	0.836347	9.87E-57	-1.69E-46
MS.gene056903	MS.gene073927	0.84526	4.54E-59	-1.69E-46
MS.gene058748	MS.gene073927	0.84682	1.71E-59	-1.69E-46
MS.gene05934	MS.gene073927	0.812662	3.79E-51	-1.69E-46
MS.gene061041	MS.gene073927	0.807538	4.81E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073927.t1	MTR_1g045520	95.862	145	6	0	1	145	152	296	1.08e-85	253
MS.gene073927.t1	MTR_4g088590	65.060	83	5	1	1	83	74	132	1.48e-16	72.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073927.t1	AT3G04310	35.948	153	81	4	1	145	125	268	4.89e-20	83.6
MS.gene073927.t1	AT3G04310	35.948	153	81	4	1	145	125	268	4.89e-20	83.6

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Find 42 sgRNAs with CRISPR-Local

Find 54 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAATACGAGGAAGGC+GGG	0.468188	1.4:+29746304	MS.gene073927:CDS
AAACCCAGAAAACTAATACG+AGG	0.734217	1.4:+29746296	MS.gene073927:CDS
AAACTAATACGAGGAAGGCG+GGG	0.635407	1.4:+29746305	MS.gene073927:CDS
AACAACGGTTCGGTTGATAG+TGG	0.539590	1.4:+29746349	MS.gene073927:CDS
AAGCAAGGAAAGGGTCACAA+AGG	0.643486	1.4:+29746443	MS.gene073927:CDS
AATAAGCAATCGAACCAAGA+GGG	0.559725	1.4:-29746518	None:intergenic
ACTGGCAATTGAGAAATTAT+GGG	0.445083	1.4:+29746183	MS.gene073927:CDS
AGAGAGCAAGGCCAACAACA+AGG	0.623233	1.4:+29746413	MS.gene073927:CDS
AGCCGAGATGCACCAAGTTT+TGG	0.334550	1.4:+29746373	MS.gene073927:CDS
AGCGCAAGTATAGGATGAAG+AGG	0.587300	1.4:+29746227	MS.gene073927:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTGGCAATTGAGAAATTAT+GGG	+	chr1.4:29746183-29746202	MS.gene073927:CDS	30.0%
AAACCCAGAAAACTAATACG+AGG	+	chr1.4:29746296-29746315	MS.gene073927:CDS	35.0%
AATAAGCAATCGAACCAAGA+GGG	-	chr1.4:29746521-29746540	None:intergenic	35.0%
CAAAGGATGAATATGGAAAG+TGG	+	chr1.4:29746460-29746479	MS.gene073927:CDS	35.0%
CAATTGAGAAATTATGGGGA+CGG	+	chr1.4:29746188-29746207	MS.gene073927:CDS	35.0%
CACTGGCAATTGAGAAATTA+TGG	+	chr1.4:29746182-29746201	MS.gene073927:CDS	35.0%
CTGGCAATTGAGAAATTATG+GGG	+	chr1.4:29746184-29746203	MS.gene073927:CDS	35.0%
AAAACTAATACGAGGAAGGC+GGG	+	chr1.4:29746304-29746323	MS.gene073927:CDS	40.0%
AGGGTCACAAAGGATGAATA+TGG	+	chr1.4:29746453-29746472	MS.gene073927:CDS	40.0%
ATAAGCAATCGAACCAAGAG+GGG	-	chr1.4:29746520-29746539	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	29746145	29746582	29746145	ID=MS.gene073927
chr1.4	mRNA	29746145	29746582	29746145	ID=MS.gene073927.t1;Parent=MS.gene073927
chr1.4	exon	29746145	29746582	29746145	ID=MS.gene073927.t1.exon1;Parent=MS.gene073927.t1
chr1.4	CDS	29746145	29746582	29746145	ID=cds.MS.gene073927.t1;Parent=MS.gene073927.t1

Gene Sequence

>MS.gene073927

ATGGCATTAGCAATCCCTCTCAGTCAGTCAGCACTTGCACTGGCAATTGAGAAATTATGGGGACGGACCGAGAGCAAACCAAAGCGCAAGTATAGGATGAAGAGGAAACGCCGAAATGTAAATGACACACGGGTTGAGGAAGAGCCAGAAGAAACCCAGAAAACTAATACGAGGAAGGCGGGGATGCAGTCGTGGGTAGTTGAGAACAACGGTTCGGTTGATAGTGGCAGCCGAGATGCACCAAGTTTTGGTGGATGGGATGACTTGGAGAGAGCAAGGCCAACAACAAGGAGATCACAAGCAAGGAAAGGGTCACAAAGGATGAATATGGAAAGTGGTAGGTTGAGTAGGAGAGAAAGAAAAAGTGATACGCCCCTCTTGGTTCGATTGCTTATTGCTATTTTTCCATTTTTGGGCACATGGACAAAGATGCTGTAA

Protein sequence

>MS.gene073927.t1

MALAIPLSQSALALAIEKLWGRTESKPKRKYRMKRKRRNVNDTRVEEEPEETQKTNTRKAGMQSWVVENNGSVDSGSRDAPSFGGWDDLERARPTTRRSQARKGSQRMNMESGRLSRRERKSDTPLLVRLLIAIFPFLGTWTKML