AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051617


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051617.t1 MTR_1g016360 98.016 252 5 0 1 252 1 252 0.0 502
MS.gene051617.t1 MTR_1g016360 96.809 188 6 0 1 188 1 188 1.38e-131 369
MS.gene051617.t1 MTR_1g016360 91.061 179 16 0 1 179 1 179 1.29e-116 332
MS.gene051617.t1 MTR_5g016100 47.205 161 84 1 50 210 66 225 5.04e-43 148
MS.gene051617.t1 MTR_5g016100 48.276 145 60 2 92 221 11 155 3.63e-34 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051617.t1 AT5G11840 61.328 256 75 5 13 248 9 260 4.37e-104 303
MS.gene051617.t1 AT5G11840 64.674 184 53 2 13 184 9 192 2.68e-81 243
MS.gene051617.t1 AT5G11840 64.481 183 53 2 13 183 9 191 1.86e-80 240
MS.gene051617.t1 AT5G11840 60.479 167 54 2 13 167 9 175 3.34e-67 206
MS.gene051617.t1 AT5G67370 41.451 193 112 1 18 210 49 240 3.06e-42 147

Find 55 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACGACTGGTACTCGTTTA+TGG 0.126473 1.3:+5852647 None:intergenic
TGTTGGTGTTAATGGGAAAA+AGG 0.219441 1.3:+5852772 None:intergenic
GTTGATGGAGGGAATAGTTT+TGG 0.223696 1.3:+5852801 None:intergenic
GATTGATTTGTTGGTGTTAA+TGG 0.236969 1.3:+5852764 None:intergenic
TGCTGCTTCTAGTGGTGTTT+TGG 0.278118 1.3:-5852466 MS.gene051617:CDS
CTTTGTTCTGTTGCTGTTGT+TGG 0.287030 1.3:+5852734 None:intergenic
TGGCTTGGTTTGGAACTGTT+GGG 0.311583 1.3:-5852521 MS.gene051617:CDS
GGTGAAGACTGCTGAGGTTT+TGG 0.325730 1.3:-5850821 MS.gene051617:CDS
GGTAATGGTGATTGATTTGT+TGG 0.349076 1.3:+5852755 None:intergenic
GGGTTACCTGTGGCTTGGTT+TGG 0.356647 1.3:-5852531 MS.gene051617:CDS
AACGACTGGTACTCGTTTAT+GGG 0.360388 1.3:+5852648 None:intergenic
TCTGTTGCTGTTGTTGGTAA+TGG 0.366769 1.3:+5852740 None:intergenic
GTGGCTTGGTTTGGAACTGT+TGG 0.374589 1.3:-5852522 MS.gene051617:CDS
ATTGATTTGTTGGTGTTAAT+GGG 0.383024 1.3:+5852765 None:intergenic
TTGTTAGGATGTATCTTGGT+TGG 0.396546 1.3:-5852428 MS.gene051617:CDS
ATGTTGTTGAATACGGTTCC+CGG 0.401820 1.3:-5852590 MS.gene051617:CDS
TGTTAGGATGTATCTTGGTT+GGG 0.425759 1.3:-5852427 MS.gene051617:CDS
AAAAGCCCACAACGAAAAGC+CGG 0.429370 1.3:+5852571 None:intergenic
GCGGTTGTTAGGATGTATCT+TGG 0.430246 1.3:-5852432 MS.gene051617:CDS
GGCTGCTGTTCTAACGGAAC+AGG 0.440485 1.3:+5852669 None:intergenic
ATCTTGGTTGGGCTTATGTT+GGG 0.441526 1.3:-5852416 MS.gene051617:CDS
TTGGCACGTGATAGACTCTT+GGG 0.445944 1.3:-5850802 MS.gene051617:CDS
CACCAGCAGCCCATGAAAAC+GGG 0.453557 1.3:+5852613 None:intergenic
AGTCGGTCTGGCAGCATGCT+TGG 0.454960 1.3:-5849737 MS.gene051617:CDS
GCTGGTGATGTTGTTGAATA+CGG 0.456887 1.3:-5852597 MS.gene051617:CDS
TTTGGCACGTGATAGACTCT+TGG 0.457104 1.3:-5850803 MS.gene051617:CDS
TATTTAACATCGAGAGAAAC+CGG 0.458605 1.3:-5849676 MS.gene051617:CDS
CTCTGTTTAAGTTCAAGAAA+CGG 0.462020 1.3:-5852702 MS.gene051617:CDS
TCACCAGCAGCCCATGAAAA+CGG 0.464675 1.3:+5852612 None:intergenic
TCCAGGTATTGCTCGAACTC+CGG 0.467416 1.3:+5849657 None:intergenic
TATATTGCAGATGAGGAGAC+AGG 0.467504 1.3:-5851470 MS.gene051617:intron
ATGTACTATTCTTCAAGATC+AGG 0.468774 1.3:+5849580 None:intergenic
TATCTTGGTTGGGCTTATGT+TGG 0.471423 1.3:-5852417 MS.gene051617:CDS
GGCTCACCACAAAATGCATC+TGG 0.473478 1.3:+5849601 None:intergenic
GACAGGGTGGTATGATGGCC+AGG 0.475845 1.3:-5851453 MS.gene051617:intron
TTGTGGGGTTACCTGTGGCT+TGG 0.484321 1.3:-5852536 MS.gene051617:CDS
GAAAATCACTCTAGTCGGTC+TGG 0.491715 1.3:-5849749 MS.gene051617:CDS
ACCGGAGTTCGAGCAATACC+TGG 0.506149 1.3:-5849658 MS.gene051617:CDS
GGCTTGGTTTGGAACTGTTG+GGG 0.506638 1.3:-5852520 MS.gene051617:CDS
GCACAAACAATTCTCTTAGC+AGG 0.508243 1.3:+5852486 None:intergenic
GAGGAGACAGGGTGGTATGA+TGG 0.516290 1.3:-5851458 MS.gene051617:CDS
ATTGTTTGTGCTGCTTCTAG+TGG 0.521546 1.3:-5852474 MS.gene051617:CDS
GATTCATCATTGTAAGCTCC+AGG 0.524014 1.3:+5849640 None:intergenic
AAAGCCCACAACGAAAAGCC+GGG 0.532515 1.3:+5852572 None:intergenic
TTTATGGGCTGCTGTTCTAA+CGG 0.540735 1.3:+5852663 None:intergenic
CTTGCTTGTGGGGTTACCTG+TGG 0.557353 1.3:-5852541 MS.gene051617:CDS
CACAGGTAACCCCACAAGCA+AGG 0.573824 1.3:+5852542 None:intergenic
TTCAAGGTTAAGCCTGTACT+CGG 0.578638 1.3:-5849778 MS.gene051617:intron
GGAACGATGTCGATAACGAC+TGG 0.595019 1.3:+5852634 None:intergenic
AGATTGAAAATCACTCTAGT+CGG 0.609573 1.3:-5849754 MS.gene051617:CDS
ACAGTTCCAAACCAAGCCAC+AGG 0.624924 1.3:+5852525 None:intergenic
ATATTGCAGATGAGGAGACA+GGG 0.660822 1.3:-5851469 MS.gene051617:intron
AGATACATTACATTCAACAG+TGG 0.729086 1.3:+5852377 None:intergenic
TTGCAGATGAGGAGACAGGG+TGG 0.732719 1.3:-5851466 MS.gene051617:intron
GATATGGGTGAAGACTGCTG+AGG 0.749406 1.3:-5850827 MS.gene051617:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTACATATAAAATCT+TGG - chr1.3:5850997-5851016 MS.gene051617:intron 10.0%
!!! GCAATAATTTTATAGTTAAA+TGG - chr1.3:5850764-5850783 MS.gene051617:intron 15.0%
!! AAAAATCTTCCATATAAACA+AGG - chr1.3:5850561-5850580 MS.gene051617:intron 20.0%
!! AAATATTTCTCTACAGATAT+GGG - chr1.3:5851571-5851590 MS.gene051617:intron 20.0%
!! ATATCTGTAGAGAAATATTT+AGG + chr1.3:5851571-5851590 None:intergenic 20.0%
!! ATTTATGCAAATGAAACTAA+CGG - chr1.3:5851136-5851155 MS.gene051617:intron 20.0%
!! CAAAAACATAAATTTCCATA+AGG + chr1.3:5852292-5852311 None:intergenic 20.0%
!! CATAAGGTTAAATTTAACAA+AGG + chr1.3:5852276-5852295 None:intergenic 20.0%
!! CTTTGTTAAATTTAACCTTA+TGG - chr1.3:5852274-5852293 MS.gene051617:intron 20.0%
!! GATCTTAAAGACTTAATATT+AGG + chr1.3:5852097-5852116 None:intergenic 20.0%
!! TAAATATTTCTCTACAGATA+TGG - chr1.3:5851570-5851589 MS.gene051617:intron 20.0%
!! TATCATATACGATTAATGTT+AGG - chr1.3:5850792-5850811 MS.gene051617:CDS 20.0%
!! TTCATTTGCATAAATTCATT+GGG + chr1.3:5851131-5851150 None:intergenic 20.0%
!! TTTCATTTGCATAAATTCAT+TGG + chr1.3:5851132-5851151 None:intergenic 20.0%
!!! ATATTGTTAGTGTTATTCAA+TGG - chr1.3:5850870-5850889 MS.gene051617:intron 20.0%
!!! GAATATCAACAGATTTTAAA+AGG + chr1.3:5852542-5852561 None:intergenic 20.0%
!!! TAAATAATTCCTGAATCTTT+TGG + chr1.3:5851855-5851874 None:intergenic 20.0%
!!! TTGTTTATATGGAAGATTTT+TGG + chr1.3:5850562-5850581 None:intergenic 20.0%
! ACTATACAATCCTCAATTAA+TGG + chr1.3:5852486-5852505 None:intergenic 25.0%
! ATAAAGAGAAAACAATTACC+TGG + chr1.3:5850981-5851000 None:intergenic 25.0%
! TGACATATCACAAAATAAAG+TGG + chr1.3:5852049-5852068 None:intergenic 25.0%
! TGTATTTACATCTCACTTAA+GGG + chr1.3:5850276-5850295 None:intergenic 25.0%
! TTAAGACTATGTAAGTAGTA+GGG - chr1.3:5851778-5851797 MS.gene051617:intron 25.0%
! TTATCTATTACTTCCATGTA+TGG - chr1.3:5850080-5850099 MS.gene051617:intron 25.0%
! TTCAATTCATCCATTAATTG+AGG - chr1.3:5852473-5852492 MS.gene051617:CDS 25.0%
! TTCATATCATTAACGTATCA+TGG + chr1.3:5850848-5850867 None:intergenic 25.0%
! TTGTATTTACATCTCACTTA+AGG + chr1.3:5850277-5850296 None:intergenic 25.0%
!! AAACTCTTTTGTAATGTTCA+AGG - chr1.3:5852619-5852638 MS.gene051617:CDS 25.0%
!! ACTTGTTTGTGTTTTACTAA+TGG - chr1.3:5851491-5851510 MS.gene051617:intron 25.0%
!! CAAAATCGAAGATCTTATTT+GGG - chr1.3:5850372-5850391 MS.gene051617:intron 25.0%
!! TACAAGATAATTTTCATCAC+AGG + chr1.3:5852320-5852339 None:intergenic 25.0%
!! TCTAAAGTCACATATATGAT+TGG - chr1.3:5851414-5851433 MS.gene051617:intron 25.0%
!! TTTAAGACTATGTAAGTAGT+AGG - chr1.3:5851777-5851796 MS.gene051617:intron 25.0%
!!! ATTGATTTGTTGGTGTTAAT+GGG + chr1.3:5849651-5849670 None:intergenic 25.0%
!!! GCTATTTTGATAAACTATCA+TGG - chr1.3:5850170-5850189 MS.gene051617:intron 25.0%
!!! TTTTGATAATGTGTCGATTA+TGG + chr1.3:5851368-5851387 None:intergenic 25.0%
ACAAATGTCGTACAAAATAG+AGG - chr1.3:5851987-5852006 MS.gene051617:intron 30.0%
AGATACATTACATTCAACAG+TGG + chr1.3:5850039-5850058 None:intergenic 30.0%
AGATTGAAAATCACTCTAGT+CGG - chr1.3:5852659-5852678 MS.gene051617:CDS 30.0%
AGTGCATAAACATATCAAGA+TGG + chr1.3:5852222-5852241 None:intergenic 30.0%
ATTTCCATACCAAAAGATTC+AGG - chr1.3:5851843-5851862 MS.gene051617:intron 30.0%
CCAAAATCGAAGATCTTATT+TGG - chr1.3:5850371-5850390 MS.gene051617:intron 30.0%
CTCACTTGTAGTAAAACATT+AGG - chr1.3:5852162-5852181 MS.gene051617:intron 30.0%
GTATTTACATCTCACTTAAG+GGG + chr1.3:5850275-5850294 None:intergenic 30.0%
GTGTTAAGAAATTTGTGGAA+GGG - chr1.3:5850892-5850911 MS.gene051617:intron 30.0%
TAAATCAAATGACAGGACAA+GGG + chr1.3:5851238-5851257 None:intergenic 30.0%
TATTTAACATCGAGAGAAAC+CGG - chr1.3:5852737-5852756 MS.gene051617:CDS 30.0%
TCCAAAATAAGAGTCAATGT+TGG + chr1.3:5850409-5850428 None:intergenic 30.0%
TTCTGGATTACTTGTTTACT+TGG - chr1.3:5851041-5851060 MS.gene051617:intron 30.0%
TTGGTATGGAAATTACTACA+AGG + chr1.3:5851836-5851855 None:intergenic 30.0%
TTGTGTTGAAATTTCTTCAC+CGG + chr1.3:5851088-5851107 None:intergenic 30.0%
! AAACGACGATTTTGTCAAAT+AGG + chr1.3:5852455-5852474 None:intergenic 30.0%
! AATTCCTGAATCTTTTGGTA+TGG + chr1.3:5851850-5851869 None:intergenic 30.0%
! ACGATTTTGTCAAATAGGAT+AGG + chr1.3:5852450-5852469 None:intergenic 30.0%
! CAATGGTGTTAAGAAATTTG+TGG - chr1.3:5850887-5850906 MS.gene051617:intron 30.0%
! CCAAATAAGATCTTCGATTT+TGG + chr1.3:5850374-5850393 None:intergenic 30.0%
! CTCTGTTTAAGTTCAAGAAA+CGG - chr1.3:5849711-5849730 MS.gene051617:CDS 30.0%
!! GATTGATTTGTTGGTGTTAA+TGG + chr1.3:5849652-5849671 None:intergenic 30.0%
!!! TCTCTTCATTTTGTTTTGGA+TGG - chr1.3:5851281-5851300 MS.gene051617:intron 30.0%
AATATGACACCTTAGCATAG+CGG - chr1.3:5852011-5852030 MS.gene051617:intron 35.0%
ACACTGCAAGTTTCAAATTG+TGG + chr1.3:5852368-5852387 None:intergenic 35.0%
ACAGTAAATGCTATAGCTCT+TGG + chr1.3:5851718-5851737 None:intergenic 35.0%
ATAAGTGCTAGTGTTACCAA+TGG - chr1.3:5850512-5850531 MS.gene051617:intron 35.0%
ATGGAAATTACTACAAGGCA+TGG + chr1.3:5851831-5851850 None:intergenic 35.0%
CTAAATCAAATGACAGGACA+AGG + chr1.3:5851239-5851258 None:intergenic 35.0%
CTCATCTGCAATATAAAGAG+AGG + chr1.3:5850938-5850957 None:intergenic 35.0%
CTCTCTTTATATTGCAGATG+AGG - chr1.3:5850936-5850955 MS.gene051617:intron 35.0%
GGTGTTAAGAAATTTGTGGA+AGG - chr1.3:5850891-5850910 MS.gene051617:intron 35.0%
GGTTCATCTTTGTATGCTAT+TGG - chr1.3:5851018-5851037 MS.gene051617:intron 35.0%
GTTCTAATTTCTCAAAGTCC+CGG - chr1.3:5851066-5851085 MS.gene051617:intron 35.0%
TGATTGCATCAATGTGAGAA+TGG - chr1.3:5850740-5850759 MS.gene051617:intron 35.0%
TGGATTACTTGTTTACTTGG+AGG - chr1.3:5851044-5851063 MS.gene051617:intron 35.0%
TGTGTTGAAATTTCTTCACC+GGG + chr1.3:5851087-5851106 None:intergenic 35.0%
TGTTAGGATGTATCTTGGTT+GGG - chr1.3:5849986-5850005 MS.gene051617:intron 35.0%
TTGCACCTAAATCAAATGAC+AGG + chr1.3:5851245-5851264 None:intergenic 35.0%
TTGTACTAAATAGCTCATCG+TGG + chr1.3:5851971-5851990 None:intergenic 35.0%
TTGTTAGGATGTATCTTGGT+TGG - chr1.3:5849985-5850004 MS.gene051617:intron 35.0%
! ATTTTCAATCTACCGAGTAC+AGG + chr1.3:5852650-5852669 None:intergenic 35.0%
! CTTGTCCTGTCATTTGATTT+AGG - chr1.3:5851237-5851256 MS.gene051617:intron 35.0%
! GGAAAAAGGGTTTTTGTTGA+TGG + chr1.3:5849630-5849649 None:intergenic 35.0%
! TTGATGGAGGGAATAGTTTT+GGG + chr1.3:5849614-5849633 None:intergenic 35.0%
! TTTGAACCAGATGCATTTTG+TGG - chr1.3:5852806-5852825 MS.gene051617:CDS 35.0%
! TTTTCTTTTGCCTTGCTTGT+GGG - chr1.3:5849861-5849880 MS.gene051617:intron 35.0%
!! AAAAGGGTTTTTGTTGATGG+AGG + chr1.3:5849627-5849646 None:intergenic 35.0%
!! AAAGGGTTTTTGTTGATGGA+GGG + chr1.3:5849626-5849645 None:intergenic 35.0%
!! ATCTGTCATGTTTTTGCCAT+AGG + chr1.3:5850596-5850615 None:intergenic 35.0%
!! GAGCTCTCTTCATTTTGTTT+TGG - chr1.3:5851277-5851296 MS.gene051617:intron 35.0%
!! GATAATGTGTCGATTATGGA+TGG + chr1.3:5851364-5851383 None:intergenic 35.0%
!! GGTAATGGTGATTGATTTGT+TGG + chr1.3:5849661-5849680 None:intergenic 35.0%
!! GTTGGTGTTAATGGGAAAAA+GGG + chr1.3:5849643-5849662 None:intergenic 35.0%
!! TCTTTGTATGCTATTGGTTC+TGG - chr1.3:5851024-5851043 MS.gene051617:intron 35.0%
!! TGGTTGTGATTTGTTGATAC+TGG - chr1.3:5851434-5851453 MS.gene051617:intron 35.0%
!! TGTTGGTGTTAATGGGAAAA+AGG + chr1.3:5849644-5849663 None:intergenic 35.0%
!!! CTTTATTTTCCACACACTTG+TGG + chr1.3:5851171-5851190 None:intergenic 35.0%
!!! GCCAACATTGACTCTTATTT+TGG - chr1.3:5850405-5850424 MS.gene051617:intron 35.0%
!!! TGTTTTGGCTGTTACTTTTG+CGG - chr1.3:5849962-5849981 MS.gene051617:intron 35.0%
AACGACTGGTACTCGTTTAT+GGG + chr1.3:5849768-5849787 None:intergenic 40.0%
ATATTGCAGATGAGGAGACA+GGG - chr1.3:5850944-5850963 MS.gene051617:intron 40.0%
ATCTTGGTTGGGCTTATGTT+GGG - chr1.3:5849997-5850016 MS.gene051617:intron 40.0%
ATGTTGTTGAATACGGTTCC+CGG - chr1.3:5849823-5849842 MS.gene051617:intron 40.0%
GATTCATCATTGTAAGCTCC+AGG + chr1.3:5852776-5852795 None:intergenic 40.0%
GCACAAACAATTCTCTTAGC+AGG + chr1.3:5849930-5849949 None:intergenic 40.0%
GTCATTGTTGCAGTCTATAG+CGG - chr1.3:5850619-5850638 MS.gene051617:intron 40.0%
GTTCAAATTCCGCTATGCTA+AGG + chr1.3:5852023-5852042 None:intergenic 40.0%
TAACGACTGGTACTCGTTTA+TGG + chr1.3:5849769-5849788 None:intergenic 40.0%
TATATTGCAGATGAGGAGAC+AGG - chr1.3:5850943-5850962 MS.gene051617:intron 40.0%
TATCTTGGTTGGGCTTATGT+TGG - chr1.3:5849996-5850015 MS.gene051617:intron 40.0%
TTCAAGGTTAAGCCTGTACT+CGG - chr1.3:5852635-5852654 MS.gene051617:CDS 40.0%
TTGTGCTCTTTCTCCATACA+TGG + chr1.3:5850096-5850115 None:intergenic 40.0%
! CACTTTTACTTGTGTCTGTG+AGG - chr1.3:5852403-5852422 MS.gene051617:CDS 40.0%
! CTTTGTTCTGTTGCTGTTGT+TGG + chr1.3:5849682-5849701 None:intergenic 40.0%
! CTTTTCTTTTGCCTTGCTTG+TGG - chr1.3:5849860-5849879 MS.gene051617:intron 40.0%
! GCTGGTGATGTTGTTGAATA+CGG - chr1.3:5849816-5849835 MS.gene051617:intron 40.0%
! GTGTCGACAAATTTCCATCA+TGG + chr1.3:5850673-5850692 None:intergenic 40.0%
! TATTTTCCACACACTTGTGG+CGG + chr1.3:5851168-5851187 None:intergenic 40.0%
! TCTGTTGCTGTTGTTGGTAA+TGG + chr1.3:5849676-5849695 None:intergenic 40.0%
! TTTATGGGCTGCTGTTCTAA+CGG + chr1.3:5849753-5849772 None:intergenic 40.0%
! TTTCTTTTGCCTTGCTTGTG+GGG - chr1.3:5849862-5849881 MS.gene051617:intron 40.0%
!! ATTGTTTGTGCTGCTTCTAG+TGG - chr1.3:5849939-5849958 MS.gene051617:intron 40.0%
!! GTTGATGGAGGGAATAGTTT+TGG + chr1.3:5849615-5849634 None:intergenic 40.0%
!! TGATGGAGGGAATAGTTTTG+GGG + chr1.3:5849613-5849632 None:intergenic 40.0%
!!! CTGTTACTTTTGCGGTTGTT+AGG - chr1.3:5849970-5849989 MS.gene051617:intron 40.0%
AAAAGCCCACAACGAAAAGC+CGG + chr1.3:5849845-5849864 None:intergenic 45.0%
AATGAAGAGAGCTCATGCAG+AGG + chr1.3:5851271-5851290 None:intergenic 45.0%
AGTGCTAGTGTTACCAATGG+TGG - chr1.3:5850515-5850534 MS.gene051617:intron 45.0%
CACGGGTCATCATCAAAACA+TGG + chr1.3:5851895-5851914 None:intergenic 45.0%
CTTGTGTCTGTGAGGAATTG+CGG - chr1.3:5852411-5852430 MS.gene051617:CDS 45.0%
GAAAATCACTCTAGTCGGTC+TGG - chr1.3:5852664-5852683 MS.gene051617:CDS 45.0%
GACAGGACAAGGGTAATATC+TGG + chr1.3:5851228-5851247 None:intergenic 45.0%
GCGGTTGTTAGGATGTATCT+TGG - chr1.3:5849981-5850000 MS.gene051617:intron 45.0%
TTGGCACGTGATAGACTCTT+GGG - chr1.3:5851611-5851630 MS.gene051617:intron 45.0%
TTTGGCACGTGATAGACTCT+TGG - chr1.3:5851610-5851629 MS.gene051617:intron 45.0%
! GACATCGTTCCCGTTTTCAT+GGG - chr1.3:5849791-5849810 MS.gene051617:intron 45.0%
!! ATGTTTTTGCCATAGGCCCA+CGG + chr1.3:5850589-5850608 None:intergenic 45.0%
!! GTGTTACCAATGGTGGATGA+TGG - chr1.3:5850522-5850541 MS.gene051617:intron 45.0%
!! TGCTGCTTCTAGTGGTGTTT+TGG - chr1.3:5849947-5849966 MS.gene051617:intron 45.0%
!! TGGCTTGGTTTGGAACTGTT+GGG - chr1.3:5849892-5849911 MS.gene051617:intron 45.0%
!!! TAGTTTTGGGGACATGCGTA+TGG + chr1.3:5849601-5849620 None:intergenic 45.0%
AAAGCCCACAACGAAAAGCC+GGG + chr1.3:5849844-5849863 None:intergenic 50.0%
ACAGTTCCAAACCAAGCCAC+AGG + chr1.3:5849891-5849910 None:intergenic 50.0%
CAGAGTCCATCATCCACCAT+TGG + chr1.3:5850531-5850550 None:intergenic 50.0%
GATATGGGTGAAGACTGCTG+AGG - chr1.3:5851586-5851605 MS.gene051617:intron 50.0%
GGAACGATGTCGATAACGAC+TGG + chr1.3:5849782-5849801 None:intergenic 50.0%
GGCTCACCACAAAATGCATC+TGG + chr1.3:5852815-5852834 None:intergenic 50.0%
TCACCAGCAGCCCATGAAAA+CGG + chr1.3:5849804-5849823 None:intergenic 50.0%
TCCATCATGGCGTCATGACA+TGG + chr1.3:5850660-5850679 None:intergenic 50.0%
TGACCCGTGCTGTCAAATAG+CGG - chr1.3:5851906-5851925 MS.gene051617:intron 50.0%
! AGTGCCGCTATTTGACAGCA+CGG + chr1.3:5851913-5851932 None:intergenic 50.0%
! CGACATCGTTCCCGTTTTCA+TGG - chr1.3:5849790-5849809 MS.gene051617:intron 50.0%
! GGTGAAGACTGCTGAGGTTT+TGG - chr1.3:5851592-5851611 MS.gene051617:intron 50.0%
! TCCAGGTATTGCTCGAACTC+CGG + chr1.3:5852759-5852778 None:intergenic 50.0%
! TCTCACTTAAGGGGCACGTT+TGG + chr1.3:5850266-5850285 None:intergenic 50.0%
!! CAATGGTGGATGATGGACTC+TGG - chr1.3:5850529-5850548 MS.gene051617:intron 50.0%
!! CCATATAAACAAGGCGCCGT+GGG - chr1.3:5850570-5850589 MS.gene051617:intron 50.0%
!! GGCTTGGTTTGGAACTGTTG+GGG - chr1.3:5849893-5849912 MS.gene051617:intron 50.0%
!! GTGGCTTGGTTTGGAACTGT+TGG - chr1.3:5849891-5849910 MS.gene051617:intron 50.0%
!! TCCATATAAACAAGGCGCCG+TGG - chr1.3:5850569-5850588 MS.gene051617:intron 50.0%
ACCGGAGTTCGAGCAATACC+TGG - chr1.3:5852755-5852774 MS.gene051617:CDS 55.0%
CACAGGTAACCCCACAAGCA+AGG + chr1.3:5849874-5849893 None:intergenic 55.0%
CACCAGCAGCCCATGAAAAC+GGG + chr1.3:5849803-5849822 None:intergenic 55.0%
CTTGCTTGTGGGGTTACCTG+TGG - chr1.3:5849872-5849891 MS.gene051617:intron 55.0%
GAGGAGACAGGGTGGTATGA+TGG - chr1.3:5850955-5850974 MS.gene051617:intron 55.0%
GCCATGTCATGACGCCATGA+TGG - chr1.3:5850656-5850675 MS.gene051617:intron 55.0%
GGCTGCTGTTCTAACGGAAC+AGG + chr1.3:5849747-5849766 None:intergenic 55.0%
TTGCAGATGAGGAGACAGGG+TGG - chr1.3:5850947-5850966 MS.gene051617:intron 55.0%
TTGTGGGGTTACCTGTGGCT+TGG - chr1.3:5849877-5849896 MS.gene051617:intron 55.0%
! GGTTCCCGGCTTTTCGTTGT+GGG - chr1.3:5849837-5849856 MS.gene051617:intron 55.0%
! GTGCCGCTATTTGACAGCAC+GGG + chr1.3:5851912-5851931 None:intergenic 55.0%
!! CCCACGGCGCCTTGTTTATA+TGG + chr1.3:5850573-5850592 None:intergenic 55.0%
!! GGGTTACCTGTGGCTTGGTT+TGG - chr1.3:5849882-5849901 MS.gene051617:intron 55.0%
!! TGGTGGATGATGGACTCTGG+AGG - chr1.3:5850532-5850551 MS.gene051617:intron 55.0%
!! TTCCCGTTTTCATGGGCTGC+TGG - chr1.3:5849798-5849817 MS.gene051617:intron 55.0%
AGTCGGTCTGGCAGCATGCT+TGG - chr1.3:5852676-5852695 MS.gene051617:CDS 60.0%
GACAGGGTGGTATGATGGCC+AGG - chr1.3:5850960-5850979 MS.gene051617:intron 60.0%
TGCAGTCCGCCACAAGTGTG+TGG - chr1.3:5851159-5851178 MS.gene051617:intron 60.0%
! CGGTTCCCGGCTTTTCGTTG+TGG - chr1.3:5849836-5849855 MS.gene051617:intron 60.0%
!! AACAAGGCGCCGTGGGCCTA+TGG - chr1.3:5850577-5850596 MS.gene051617:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 5849585 5852850 5849585 ID=MS.gene051617
chr1.3 mRNA 5849585 5852850 5849585 ID=MS.gene051617.t1;Parent=MS.gene051617
chr1.3 exon 5852388 5852850 5852388 ID=MS.gene051617.t1.exon1;Parent=MS.gene051617.t1
chr1.3 CDS 5852388 5852850 5852388 ID=cds.MS.gene051617.t1;Parent=MS.gene051617.t1
chr1.3 exon 5851454 5851482 5851454 ID=MS.gene051617.t1.exon2;Parent=MS.gene051617.t1
chr1.3 CDS 5851454 5851482 5851454 ID=cds.MS.gene051617.t1;Parent=MS.gene051617.t1
chr1.3 exon 5850792 5850848 5850792 ID=MS.gene051617.t1.exon3;Parent=MS.gene051617.t1
chr1.3 CDS 5850792 5850848 5850792 ID=cds.MS.gene051617.t1;Parent=MS.gene051617.t1
chr1.3 exon 5849585 5849794 5849585 ID=MS.gene051617.t1.exon4;Parent=MS.gene051617.t1
chr1.3 CDS 5849585 5849794 5849585 ID=cds.MS.gene051617.t1;Parent=MS.gene051617.t1
Gene Sequence

>MS.gene051617

ATGGCAACAATATCCATACGCATGTCCCCAAAACTATTCCCTCCATCAACAAAAACCCTTTTTCCCATTAACACCAACAAATCAATCACCATTACCAACAACAGCAACAGAACAAAGCTATCGTTGCTCTGTTTAAGTTCAAGAAACGGAACAGAGTGTCCTGTTCCGTTAGAACAGCAGCCCATAAACGAGTACCAGTCGTTATCGACATCGTTCCCGTTTTCATGGGCTGCTGGTGATGTTGTTGAATACGGTTCCCGGCTTTTCGTTGTGGGCTTTTCTTTTGCCTTGCTTGTGGGGTTACCTGTGGCTTGGTTTGGAACTGTTGGGGCACAATATGAGCCTGCTAAGAGAATTGTTTGTGCTGCTTCTAGTGGTGTTTTGGCTGTTACTTTTGCGGTTGTTAGGATGTATCTTGGTTGGGCTTATGTTGGGAATCGTTTGCTCAGTGCCACTGTTGAATGTAATGTATCTTCTCTCTCTACTTTTCTTTCTTTATCTATTACTTCCATGTATGGAGAAAGAGCACAATTAAATCACTTATAGCATAGATGCTCTTATAAGTTATTTTCATGTTAGTCATAAGCTATTTTGATAAACTATCATGGAGAGCTTATTGAAATAAGTCAGTGTATTTCGCAAATGTTTGTGTTAGTTGATAAACTCATATAATTCACTCCAAACGTGCCCCTTAAGTGAGATGTAAATACAAAGAATCTAAAAAGAAAAATTTCTTATGATTAATTTTTTAACTTTTATGAATTGATATTAAAATAATGATGCACTCCAAAATCGAAGATCTTATTTGGGCTTATCTATTGCCAACATTGACTCTTATTTTGGAGAACTTATAAACACGTCTTTAAGCTGTTGTTGATTTATTTTAATAAGTTCTTTTGATTATAGAAATTAGTTTATAGTTTAAACATAAGTGCTAGTGTTACCAATGGTGGATGATGGACTCTGGAGGCTAGCCAAAAATCTTCCATATAAACAAGGCGCCGTGGGCCTATGGCAAAAACATGACAGATACAGTCATTGTTGCAGTCTATAGCGGCTAGCATACAGTCTGCCATGTCATGACGCCATGATGGAAATTTGTCGACACTAAGAAGCAATTTTATATGATAATCTTTGATTAAATTGTTTATTCAGTGATTGCATCAATGTGAGAATGGTGCAATAATTTTATAGTTAAATGGTCTAGTATCATATACGATTAATGTTAGGACATATTGAAGTTGTGTACTCTATTTTTATCCATGATACGTTAATGATATGAAAAATATTGTTAGTGTTATTCAATGGTGTTAAGAAATTTGTGGAAGGGTTGCATAATCAGTGATCACTCCTCTCTTTATATTGCAGATGAGGAGACAGGGTGGTATGATGGCCAGGTAATTGTTTTCTCTTTATATTACATATAAAATCTTGGTTCATCTTTGTATGCTATTGGTTCTGGATTACTTGTTTACTTGGAGGTTCTAATTTCTCAAAGTCCCGGTGAAGAAATTTCAACACAACATATATATTGCTCTCGTCTCCCAATGAATTTATGCAAATGAAACTAACGGTGCAGTCCGCCACAAGTGTGTGGAAAATAAAGTGAAATATCTTAGCAAAATGTTGTATAGTGTATACCAGATATTACCCTTGTCCTGTCATTTGATTTAGGTGCAATTGCCTCTGCATGAGCTCTCTTCATTTTGTTTTGGATGGTGTAAACAAATAATTTAAGTCATATACACTGTTTGTGTAATTTTTTACAATGTTAAACCATCCATAATCGACACATTATCAAAAATATTTGATTTCAATCATTAACTAGTTCTAAAGTCACATATATGATTGGTTGTGATTTGTTGATACTGGAATTTTTTTTACTTTGATTGTGCATCAAAATTAAACTTGTTTGTGTTTTACTAATGGCATATTTAAGTCAGAGAGAACAAAGTCTAAACTAAGTTTATTTTTGCAATTAAACCTAAATATTTCTCTACAGATATGGGTGAAGACTGCTGAGGTTTTGGCACGTGATAGACTCTTGGGATCATTTTCTGTAAGCATTCTATTTGACTACTGCTGTAGTTTAAAAAATTTAACTTCATTGTTGCTAGAGACTTTTGTTATCCAAGAGCTATAGCATTTACTGTTTATTTATTTATTCTTTCTTTTGAGCATCAAATAGTTTTTTTAAGACTATGTAAGTAGTAGGGCAAAAATCACTATTTTGACTGAAACAGCCATGCCTTGTAGTAATTTCCATACCAAAAGATTCAGGAATTATTTAACTAAAATTACATAAGACCATGTTTTGATGATGACCCGTGCTGTCAAATAGCGGCACTATAGCGTATCAGAACTTAAACAAATTACTATTGTTCCACGATGAGCTATTTAGTACAAATGTCGTACAAAATAGAGGCAATATGACACCTTAGCATAGCGGAATTTGAACAAACCACTTTATTTTGTGATATGTCATTGACAACACTGATGAACACTAGAGCCTAATATTAAGTCTTTAAGATCTTCATATGTTTCACAGCTGACTATTATTTTCATAAAATTGAAACACTCACTTGTAGTAAAACATTAGGTTAGTGCTGAGTGCTGACAGAACTATTCAGTCTACCATCTTGATATGTTTATGCACTCACATTCTCATTTGTGTATTTTTATTTTTTTCCTTTGTTAAATTTAACCTTATGGAAATTTATGTTTTTGTGAATCCTGTGATGAAAATTATCTTGTAGACAATGTCAAGTTGATATTGTCAACCACAATTTGAAACTTGCAGTGTTGTTTTTTTGTTCTACACTTTTACTTGTGTCTGTGAGGAATTGCGGTAAAGTAACACATCCTATCCTATTTGACAAAATCGTCGTTTCAATTCATCCATTAATTGAGGATTGTATAGTTTAATAACTGTACAACGACACTAAACAAATATTCCTTTTAAAATCTGTTGATATTCTTTCAAAATAGTGAAATTTGATTCGACGTAATCATAAAATTTGCTTAGAGTCTCATTAAACTCTTTTGTAATGTTCAAGGTTAAGCCTGTACTCGGTAGATTGAAAATCACTCTAGTCGGTCTGGCAGCATGCTTGGTGACATGTGCACTTATCTTCATTAACATTGATGAAAGTTATTTAACATCGAGAGAAACCGGAGTTCGAGCAATACCTGGAGCTTACAATGATGAATCTGCAAGATCATTTGAACCAGATGCATTTTGTGGTGAGCCTGATCTTGAAGAATAG

Protein sequence

>MS.gene051617.t1

MATISIRMSPKLFPPSTKTLFPINTNKSITITNNSNRTKLSLLCLSSRNGTECPVPLEQQPINEYQSLSTSFPFSWAAGDVVEYGSRLFVVGFSFALLVGLPVAWFGTVGAQYEPAKRIVCAASSGVLAVTFAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLGRLKITLVGLAACLVTCALIFINIDESYLTSRETGVRAIPGAYNDESARSFEPDAFCGEPDLEE