Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074387.t1 | KEH35080.1 | 97.4 | 504 | 13 | 0 | 1 | 504 | 31 | 534 | 1.90E-285 | 991.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074387.t1 | Q9S795 | 75.4 | 501 | 123 | 0 | 1 | 501 | 1 | 501 | 2.6e-235 | 815.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074387.t1 | A0A072VA63 | 97.4 | 504 | 13 | 0 | 1 | 504 | 31 | 534 | 1.4e-285 | 991.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052494 | MS.gene074387 | 0.804185 | 2.44E-49 | -1.69E-46 |
| MS.gene053097 | MS.gene074387 | 0.81132 | 7.43E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene074387 | -0.803265 | 3.79E-49 | -1.69E-46 |
| MS.gene060358 | MS.gene074387 | 0.800291 | 1.54E-48 | -1.69E-46 |
| MS.gene061044 | MS.gene074387 | 0.821809 | 3.31E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074387.t1 | MTR_3g078490 | 97.421 | 504 | 13 | 0 | 1 | 504 | 31 | 534 | 0.0 | 1008 |
| MS.gene074387.t1 | MTR_3g078550 | 91.849 | 503 | 41 | 0 | 1 | 503 | 1 | 503 | 0.0 | 934 |
| MS.gene074387.t1 | MTR_3g078550 | 91.863 | 467 | 38 | 0 | 37 | 503 | 7 | 473 | 0.0 | 865 |
| MS.gene074387.t1 | MTR_4g106510 | 80.915 | 503 | 96 | 0 | 1 | 503 | 1 | 503 | 0.0 | 819 |
| MS.gene074387.t1 | MTR_3g078490 | 96.774 | 341 | 11 | 0 | 1 | 341 | 1 | 341 | 0.0 | 673 |
| MS.gene074387.t1 | MTR_6g086300 | 40.974 | 493 | 280 | 5 | 4 | 494 | 18 | 501 | 2.87e-120 | 362 |
| MS.gene074387.t1 | MTR_6g086300 | 40.974 | 493 | 280 | 5 | 4 | 494 | 18 | 501 | 2.87e-120 | 362 |
| MS.gene074387.t1 | MTR_6g086340 | 40.162 | 493 | 284 | 5 | 4 | 494 | 16 | 499 | 3.20e-119 | 359 |
| MS.gene074387.t1 | MTR_8g083530 | 38.664 | 494 | 290 | 6 | 4 | 494 | 19 | 502 | 9.67e-115 | 348 |
| MS.gene074387.t1 | MTR_8g064170 | 38.306 | 496 | 293 | 6 | 2 | 494 | 55 | 540 | 1.16e-114 | 349 |
| MS.gene074387.t1 | MTR_2g067660 | 39.413 | 477 | 279 | 3 | 9 | 485 | 48 | 514 | 1.66e-113 | 345 |
| MS.gene074387.t1 | MTR_4g107040 | 38.855 | 489 | 286 | 6 | 9 | 494 | 65 | 543 | 3.12e-111 | 340 |
| MS.gene074387.t1 | MTR_3g078170 | 37.988 | 487 | 289 | 6 | 11 | 494 | 65 | 541 | 1.38e-108 | 333 |
| MS.gene074387.t1 | MTR_8g083520 | 37.728 | 493 | 263 | 6 | 4 | 494 | 10 | 460 | 1.04e-106 | 326 |
| MS.gene074387.t1 | MTR_8g064170 | 36.290 | 496 | 271 | 7 | 2 | 494 | 55 | 508 | 7.19e-101 | 313 |
| MS.gene074387.t1 | MTR_8g083520 | 38.186 | 419 | 218 | 5 | 78 | 494 | 1 | 380 | 5.24e-92 | 285 |
| MS.gene074387.t1 | MTR_3g078170 | 37.093 | 399 | 238 | 6 | 11 | 406 | 65 | 453 | 3.16e-82 | 263 |
| MS.gene074387.t1 | MTR_3g078170 | 37.105 | 380 | 226 | 6 | 11 | 387 | 65 | 434 | 1.52e-75 | 245 |
| MS.gene074387.t1 | MTR_3g078170 | 37.234 | 376 | 223 | 6 | 11 | 383 | 65 | 430 | 1.67e-75 | 244 |
| MS.gene074387.t1 | MTR_8g083530 | 38.279 | 337 | 197 | 5 | 4 | 337 | 19 | 347 | 9.36e-68 | 222 |
| MS.gene074387.t1 | MTR_4g131180 | 34.681 | 470 | 282 | 11 | 9 | 470 | 17 | 469 | 5.35e-67 | 224 |
| MS.gene074387.t1 | MTR_1g014320 | 32.976 | 467 | 290 | 10 | 11 | 470 | 19 | 469 | 3.95e-65 | 219 |
| MS.gene074387.t1 | MTR_1690s0010 | 37.249 | 349 | 213 | 3 | 7 | 355 | 8 | 350 | 4.08e-65 | 215 |
| MS.gene074387.t1 | MTR_4g131180 | 34.521 | 449 | 270 | 10 | 9 | 450 | 17 | 448 | 6.62e-64 | 215 |
| MS.gene074387.t1 | MTR_2g034160 | 29.363 | 487 | 322 | 9 | 23 | 499 | 64 | 538 | 7.13e-61 | 210 |
| MS.gene074387.t1 | MTR_2g042330 | 28.958 | 480 | 314 | 11 | 11 | 480 | 25 | 487 | 4.06e-55 | 192 |
| MS.gene074387.t1 | MTR_2g009750 | 29.645 | 479 | 307 | 9 | 25 | 491 | 31 | 491 | 4.56e-48 | 174 |
| MS.gene074387.t1 | MTR_2g009750 | 29.645 | 479 | 307 | 9 | 25 | 491 | 32 | 492 | 5.04e-48 | 173 |
| MS.gene074387.t1 | MTR_2g009750 | 29.583 | 480 | 307 | 9 | 25 | 491 | 32 | 493 | 6.96e-48 | 173 |
| MS.gene074387.t1 | MTR_4g093170 | 27.824 | 478 | 326 | 8 | 25 | 495 | 59 | 524 | 2.25e-46 | 169 |
| MS.gene074387.t1 | MTR_1399s0020 | 30.833 | 360 | 195 | 6 | 138 | 494 | 38 | 346 | 5.37e-44 | 159 |
| MS.gene074387.t1 | MTR_8g076480 | 29.930 | 431 | 288 | 9 | 60 | 485 | 17 | 438 | 5.08e-43 | 159 |
| MS.gene074387.t1 | MTR_3g088150 | 29.245 | 424 | 284 | 9 | 68 | 485 | 34 | 447 | 1.51e-40 | 152 |
| MS.gene074387.t1 | MTR_1g029840 | 31.105 | 344 | 222 | 8 | 147 | 485 | 112 | 445 | 3.10e-39 | 149 |
| MS.gene074387.t1 | MTR_1g029840 | 31.105 | 344 | 222 | 8 | 147 | 485 | 112 | 445 | 3.13e-39 | 149 |
| MS.gene074387.t1 | MTR_8g094600 | 29.647 | 425 | 281 | 10 | 68 | 485 | 85 | 498 | 1.20e-37 | 145 |
| MS.gene074387.t1 | MTR_2g097950 | 26.834 | 477 | 305 | 15 | 46 | 500 | 12 | 466 | 7.58e-37 | 142 |
| MS.gene074387.t1 | MTR_1222s0010 | 30.959 | 365 | 226 | 8 | 99 | 451 | 52 | 402 | 5.80e-33 | 133 |
| MS.gene074387.t1 | MTR_2g097950 | 25.957 | 470 | 283 | 14 | 46 | 500 | 12 | 431 | 5.17e-32 | 128 |
| MS.gene074387.t1 | MTR_4g065040 | 28.667 | 450 | 301 | 10 | 60 | 500 | 13 | 451 | 6.24e-31 | 125 |
| MS.gene074387.t1 | MTR_1314s0010 | 30.966 | 352 | 217 | 7 | 151 | 487 | 1 | 341 | 1.75e-29 | 119 |
| MS.gene074387.t1 | MTR_4g107940 | 25.658 | 304 | 194 | 10 | 144 | 429 | 187 | 476 | 4.28e-14 | 75.1 |
| MS.gene074387.t1 | MTR_4g107940 | 25.658 | 304 | 194 | 10 | 144 | 429 | 187 | 476 | 7.02e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074387.t1 | AT1G74920 | 75.449 | 501 | 123 | 0 | 1 | 501 | 1 | 501 | 0.0 | 822 |
| MS.gene074387.t1 | AT1G74920 | 74.451 | 501 | 123 | 1 | 1 | 501 | 1 | 496 | 0.0 | 806 |
| MS.gene074387.t1 | AT3G48170 | 73.161 | 503 | 135 | 0 | 1 | 503 | 1 | 503 | 0.0 | 796 |
| MS.gene074387.t1 | AT3G24503 | 43.033 | 488 | 268 | 5 | 9 | 494 | 21 | 500 | 4.58e-134 | 397 |
| MS.gene074387.t1 | AT3G48000 | 39.113 | 496 | 289 | 6 | 2 | 494 | 52 | 537 | 1.62e-116 | 354 |
| MS.gene074387.t1 | AT1G23800 | 37.728 | 493 | 294 | 6 | 5 | 494 | 51 | 533 | 1.99e-108 | 333 |
| MS.gene074387.t1 | AT1G79440 | 38.155 | 477 | 285 | 4 | 9 | 485 | 54 | 520 | 1.59e-104 | 323 |
| MS.gene074387.t1 | AT3G66658 | 31.263 | 483 | 310 | 10 | 22 | 494 | 63 | 533 | 5.20e-66 | 223 |
| MS.gene074387.t1 | AT3G66658 | 31.263 | 483 | 310 | 10 | 22 | 494 | 63 | 533 | 1.42e-65 | 223 |
| MS.gene074387.t1 | AT2G24270 | 32.623 | 469 | 293 | 10 | 9 | 470 | 17 | 469 | 3.16e-64 | 217 |
| MS.gene074387.t1 | AT2G24270 | 32.623 | 469 | 293 | 10 | 9 | 470 | 17 | 469 | 3.16e-64 | 217 |
| MS.gene074387.t1 | AT2G24270 | 32.623 | 469 | 293 | 10 | 9 | 470 | 17 | 469 | 3.60e-64 | 217 |
| MS.gene074387.t1 | AT2G24270 | 32.623 | 469 | 293 | 10 | 9 | 470 | 57 | 509 | 5.34e-64 | 217 |
| MS.gene074387.t1 | AT1G23800 | 37.202 | 336 | 200 | 5 | 5 | 337 | 51 | 378 | 1.36e-63 | 213 |
| MS.gene074387.t1 | AT1G54100 | 28.921 | 491 | 324 | 10 | 11 | 492 | 24 | 498 | 1.68e-55 | 194 |
| MS.gene074387.t1 | AT1G54100 | 28.921 | 491 | 324 | 10 | 11 | 492 | 24 | 498 | 1.68e-55 | 194 |
| MS.gene074387.t1 | AT2G14170 | 28.931 | 477 | 315 | 9 | 25 | 494 | 22 | 481 | 8.31e-49 | 176 |
| MS.gene074387.t1 | AT2G14170 | 28.931 | 477 | 315 | 9 | 25 | 494 | 131 | 590 | 3.08e-48 | 176 |
| MS.gene074387.t1 | AT2G14170 | 29.577 | 426 | 288 | 5 | 25 | 448 | 131 | 546 | 1.01e-46 | 171 |
| MS.gene074387.t1 | AT1G44170 | 29.917 | 361 | 238 | 7 | 130 | 485 | 28 | 378 | 2.06e-41 | 154 |
| MS.gene074387.t1 | AT1G44170 | 29.917 | 361 | 238 | 7 | 130 | 485 | 91 | 441 | 4.05e-41 | 154 |
| MS.gene074387.t1 | AT1G44170 | 29.917 | 361 | 238 | 7 | 130 | 485 | 91 | 441 | 4.05e-41 | 154 |
| MS.gene074387.t1 | AT4G36250 | 27.511 | 458 | 298 | 12 | 42 | 485 | 3 | 440 | 7.69e-37 | 142 |
| MS.gene074387.t1 | AT4G34240 | 27.040 | 429 | 298 | 8 | 61 | 485 | 72 | 489 | 6.96e-28 | 117 |
| MS.gene074387.t1 | AT4G34240 | 27.040 | 429 | 298 | 8 | 61 | 485 | 87 | 504 | 7.19e-28 | 117 |
| MS.gene074387.t1 | AT4G34240 | 28.363 | 342 | 234 | 6 | 147 | 485 | 29 | 362 | 1.13e-27 | 115 |
| MS.gene074387.t1 | AT4G34240 | 29.617 | 287 | 193 | 6 | 61 | 345 | 87 | 366 | 1.19e-16 | 82.4 |
Find 115 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATCTCTACCTTTGTTTC+TGG | 0.077021 | 3.4:+75086520 | None:intergenic |
| TTAAATATTGTCACTGGATT+AGG | 0.235962 | 3.4:-75078696 | MS.gene074387:CDS |
| ATTATCTAGGGCGGTGTTAT+TGG | 0.270755 | 3.4:-75079153 | MS.gene074387:intron |
| GGCATTAAACGTAGTGGTTT+TGG | 0.273926 | 3.4:-75069621 | MS.gene074387:CDS |
| TCAGTGGAGGGATTGATTAT+TGG | 0.289338 | 3.4:+75086725 | None:intergenic |
| AGAGATTGGTCTACTGCTTC+TGG | 0.302530 | 3.4:-75086506 | MS.gene074387:CDS |
| TTTCTGCAGGTTCTTCAATC+TGG | 0.307088 | 3.4:-75069696 | MS.gene074387:intron |
| TCTACCTTTGTTTCTGGAAA+TGG | 0.315025 | 3.4:+75086526 | None:intergenic |
| TGACTACCTCGATGCAAATT+TGG | 0.321570 | 3.4:-75070041 | MS.gene074387:CDS |
| ATATTTCACAGCTATGGCTT+GGG | 0.322049 | 3.4:-75069853 | MS.gene074387:intron |
| CCATGAAGCTGGCGCTTCTT+TGG | 0.329631 | 3.4:-75078673 | MS.gene074387:CDS |
| ATTTGATAGATTTCCTTTAC+TGG | 0.341689 | 3.4:-75078502 | MS.gene074387:intron |
| CCAAAGAAGCGCCAGCTTCA+TGG | 0.354485 | 3.4:+75078673 | None:intergenic |
| GCACAGCCAGCAGCCAGAGC+TGG | 0.360734 | 3.4:+75078887 | None:intergenic |
| AAGTCTATTCACAAATTCTA+TGG | 0.367318 | 3.4:+75077691 | None:intergenic |
| TTACAAATTTAGGACTTGTT+TGG | 0.370294 | 3.4:-75078763 | MS.gene074387:intron |
| TTTACTGGTAGCTCTGCAAC+TGG | 0.370902 | 3.4:-75078487 | MS.gene074387:CDS |
| ACCTGTGCTTCACTGACAAT+AGG | 0.380793 | 3.4:+75077608 | None:intergenic |
| ACCCCTTGGAAGAAGGTTGC+AGG | 0.381818 | 3.4:-75077637 | MS.gene074387:CDS |
| ATCTCATCCTGATGTAGATA+TGG | 0.386512 | 3.4:-75078649 | MS.gene074387:intron |
| AATATTGAAGCCGTCTGAAT+TGG | 0.395523 | 3.4:-75078861 | MS.gene074387:CDS |
| TTGTGAATAGACTTGTGAAA+TGG | 0.395872 | 3.4:-75077682 | MS.gene074387:CDS |
| AAGATGCGAGCGCCTATCTA+AGG | 0.397430 | 3.4:-75069803 | MS.gene074387:intron |
| TTCTTCAATCTGGAATTGTA+TGG | 0.398500 | 3.4:-75069686 | MS.gene074387:CDS |
| GGATATACCAGCTGCTACTA+AGG | 0.400740 | 3.4:-75086585 | MS.gene074387:CDS |
| GTTGCTGAATGGACCATCTA+TGG | 0.408946 | 3.4:-75077995 | MS.gene074387:CDS |
| TTAAACTTACATGCACAATA+AGG | 0.409766 | 3.4:+75077930 | None:intergenic |
| TGAGGATGTTGACCTTGATA+AGG | 0.409876 | 3.4:-75078247 | MS.gene074387:CDS |
| ATTAATGCAACAACACCAAT+AGG | 0.410007 | 3.4:+75079027 | None:intergenic |
| AGTAGACAATTATTCATAGA+TGG | 0.413804 | 3.4:-75086782 | MS.gene074387:CDS |
| TTTAGGACTTGTTTGGAGTT+AGG | 0.415116 | 3.4:-75078756 | MS.gene074387:intron |
| TATGGCTGCTTCTATACTAA+TGG | 0.415426 | 3.4:-75077977 | MS.gene074387:CDS |
| ATCATTAAACAGTTGCTGAA+TGG | 0.424845 | 3.4:-75078006 | MS.gene074387:intron |
| GTCACATCTGTTATGATGGT+TGG | 0.427065 | 3.4:+75070060 | None:intergenic |
| CCAGAAACAAAGGTAGAGAT+TGG | 0.430993 | 3.4:-75086520 | MS.gene074387:CDS |
| ATTGCTCCAGCTCTGGCTGC+TGG | 0.433107 | 3.4:-75078893 | MS.gene074387:CDS |
| TGCTCCTATATCTCTTCCTA+TGG | 0.434811 | 3.4:-75079079 | MS.gene074387:CDS |
| TTGGAAGAAGGTTGCAGGCT+AGG | 0.437190 | 3.4:-75077632 | MS.gene074387:CDS |
| GTTAACTATGACATCTTTGA+AGG | 0.439189 | 3.4:+75069412 | None:intergenic |
| GATATTTCACAGCTATGGCT+TGG | 0.445240 | 3.4:-75069854 | MS.gene074387:intron |
| TGGATCAATTGTGCTCAAAC+AGG | 0.445550 | 3.4:-75069666 | MS.gene074387:CDS |
| GCTTCTGGTTCTCTTCGTGC+TGG | 0.449853 | 3.4:-75086491 | MS.gene074387:CDS |
| AAGGAAAATTGCTCCAGCTC+TGG | 0.456691 | 3.4:-75078900 | MS.gene074387:CDS |
| GTATCCATAGGAAGAGATAT+AGG | 0.466773 | 3.4:+75079075 | None:intergenic |
| ATTTCAGACCCCTTGGAAGA+AGG | 0.469929 | 3.4:-75077644 | MS.gene074387:CDS |
| GAGGATGTTGACCTTGATAA+GGG | 0.470972 | 3.4:-75078246 | MS.gene074387:intron |
| AGTATAGAAGCAGCCATAGA+TGG | 0.473389 | 3.4:+75077982 | None:intergenic |
| AGGCTTCGTTCGAGCTCCAT+GGG | 0.473533 | 3.4:-75069646 | MS.gene074387:CDS |
| TAGCCTGCAACCTTCTTCCA+AGG | 0.480512 | 3.4:+75077634 | None:intergenic |
| GGATTAGTCTCACCTTAGAT+AGG | 0.481249 | 3.4:+75069791 | None:intergenic |
| GGTGTCTTAAATATTGTCAC+TGG | 0.482343 | 3.4:-75078702 | MS.gene074387:CDS |
| CCCTATTGTCAGTGAAGCAC+AGG | 0.482906 | 3.4:-75077609 | MS.gene074387:intron |
| CCTGTGCTTCACTGACAATA+GGG | 0.485460 | 3.4:+75077609 | None:intergenic |
| CCCTCCACTGAAAATATCAT+AGG | 0.488751 | 3.4:-75086713 | MS.gene074387:intron |
| TGTGAATAGACTTGTGAAAT+GGG | 0.492497 | 3.4:-75077681 | MS.gene074387:CDS |
| TGCTGGACTTGCTGAAGGGT+TGG | 0.492687 | 3.4:-75079115 | MS.gene074387:CDS |
| AGTTGCAGAGCTACCAGTAA+AGG | 0.496448 | 3.4:+75078489 | None:intergenic |
| TCGATGGCAGAATTTAAAGA+AGG | 0.503397 | 3.4:-75070097 | MS.gene074387:intron |
| AAAACCACTGGATGAAGCAC+TGG | 0.505361 | 3.4:-75079265 | MS.gene074387:CDS |
| CATCAAAATTTCAGACCCCT+TGG | 0.510382 | 3.4:-75077651 | MS.gene074387:CDS |
| TTTCGAACCATATCTACATC+AGG | 0.510557 | 3.4:+75078642 | None:intergenic |
| CAGGCTTCGTTCGAGCTCCA+TGG | 0.512023 | 3.4:-75069647 | MS.gene074387:CDS |
| AAGCTCCTATACTCAACAAA+AGG | 0.512483 | 3.4:-75086751 | MS.gene074387:CDS |
| TATGTTCTCAAGGAGCCTAT+TGG | 0.514657 | 3.4:-75079042 | MS.gene074387:CDS |
| TAGGAACTATCCTCTCTCAA+TGG | 0.514791 | 3.4:-75078927 | MS.gene074387:CDS |
| ACATCTTCCTTAGTAGCAGC+TGG | 0.522852 | 3.4:+75086578 | None:intergenic |
| GTACATATCTGATGAGCAGT+GGG | 0.523721 | 3.4:-75069449 | MS.gene074387:CDS |
| TGAGTGTGAAGCAAGTTACT+AGG | 0.525857 | 3.4:-75069471 | MS.gene074387:CDS |
| TTGGTCGCGAATTAGGAGAA+TGG | 0.527821 | 3.4:-75069602 | MS.gene074387:intron |
| AGCCTGCAACCTTCTTCCAA+GGG | 0.527999 | 3.4:+75077635 | None:intergenic |
| GGCGAAATATGCAGAGAAGT+TGG | 0.528758 | 3.4:-75078735 | MS.gene074387:CDS |
| TCTTCGAGCAATTGCTGCAA+AGG | 0.530890 | 3.4:-75086465 | MS.gene074387:intron |
| CTTCAAAAGCTATGTTCTCA+AGG | 0.533468 | 3.4:-75079052 | MS.gene074387:CDS |
| GGTAGTCACATCTGTTATGA+TGG | 0.533599 | 3.4:+75070056 | None:intergenic |
| TATTTCACAGCTATGGCTTG+GGG | 0.535756 | 3.4:-75069852 | MS.gene074387:intron |
| AGGCAAACCAACCCTTATCA+AGG | 0.536726 | 3.4:+75078235 | None:intergenic |
| AGCTGCAGCACAACTAATCA+AGG | 0.537292 | 3.4:-75078449 | MS.gene074387:intron |
| TATCTGATGAGCAGTGGGGC+TGG | 0.538103 | 3.4:-75069444 | MS.gene074387:CDS |
| CGATGGCAGAATTTAAAGAA+GGG | 0.538375 | 3.4:-75070096 | MS.gene074387:intron |
| TTGTTGCATTAATTACTCCA+TGG | 0.543900 | 3.4:-75079017 | MS.gene074387:intron |
| TACTATGCTGGACTTGCTGA+AGG | 0.544071 | 3.4:-75079120 | MS.gene074387:CDS |
| AAACTTGAATCAATTGATTG+TGG | 0.547623 | 3.4:-75079288 | MS.gene074387:CDS |
| ATCAACTCACTGGGTGTCGT+TGG | 0.551666 | 3.4:+75069948 | None:intergenic |
| AATTGATTGTGGAAAACCAC+TGG | 0.554464 | 3.4:-75079277 | MS.gene074387:CDS |
| AGAGAAGTTGGCCTTCCTCC+CGG | 0.556168 | 3.4:-75078723 | MS.gene074387:CDS |
| ACTGGATTAGGCCATGAAGC+TGG | 0.561019 | 3.4:-75078684 | MS.gene074387:CDS |
| ATCTCAACGGCTAAGAGTGA+AGG | 0.561409 | 3.4:-75070227 | MS.gene074387:CDS |
| TTAACTATGACATCTTTGAA+GGG | 0.562539 | 3.4:+75069413 | None:intergenic |
| TTCGTTCGAGCTCCATGGGG+AGG | 0.569240 | 3.4:-75069642 | MS.gene074387:CDS |
| TATTTAAGACACCGGGAGGA+AGG | 0.570198 | 3.4:+75078712 | None:intergenic |
| ATCCTCTCTCAATGGCGGCA+AGG | 0.570320 | 3.4:-75078919 | MS.gene074387:CDS |
| TTCCTTGCCGCCATTGAGAG+AGG | 0.573066 | 3.4:+75078917 | None:intergenic |
| AAACCACTGGATGAAGCACT+GGG | 0.579432 | 3.4:-75079264 | MS.gene074387:CDS |
| GATGCAAATTTGGAGAGAAG+AGG | 0.583417 | 3.4:-75070031 | MS.gene074387:CDS |
| TAACTATGACATCTTTGAAG+GGG | 0.596331 | 3.4:+75069414 | None:intergenic |
| TTACTGGTAGCTCTGCAACT+GGG | 0.611165 | 3.4:-75078486 | MS.gene074387:CDS |
| AATTATTCATAGATGGAGAG+TGG | 0.612529 | 3.4:-75086775 | MS.gene074387:CDS |
| TACACAGATGCCAATTCAGA+CGG | 0.614415 | 3.4:+75078851 | None:intergenic |
| AGAGCCATTTCCAGAAACAA+AGG | 0.615015 | 3.4:-75086530 | MS.gene074387:CDS |
| GCCTGCAACCTTCTTCCAAG+GGG | 0.615474 | 3.4:+75077636 | None:intergenic |
| AGTGACAATATTTAAGACAC+CGG | 0.617571 | 3.4:+75078704 | None:intergenic |
| CTACGTTTAATGCCTCCCCA+TGG | 0.624319 | 3.4:+75069630 | None:intergenic |
| GGTACATATCTGATGAGCAG+TGG | 0.625206 | 3.4:-75069450 | MS.gene074387:CDS |
| AACTGGTGGATGTCGACCAG+AGG | 0.630389 | 3.4:-75070192 | MS.gene074387:intron |
| ACCACTGGATGAAGCACTGG+GGG | 0.636518 | 3.4:-75079262 | MS.gene074387:CDS |
| TGGGGAGGCATTAAACGTAG+TGG | 0.638861 | 3.4:-75069627 | MS.gene074387:CDS |
| TTCTCTCCAAATTTGCATCG+AGG | 0.657536 | 3.4:+75070035 | None:intergenic |
| GTGACAATATTTAAGACACC+GGG | 0.665124 | 3.4:+75078705 | None:intergenic |
| ACTATGCTGGACTTGCTGAA+GGG | 0.667267 | 3.4:-75079119 | MS.gene074387:CDS |
| GAACTATCCTCTCTCAATGG+CGG | 0.667430 | 3.4:-75078924 | MS.gene074387:CDS |
| ACAATATTTAAGACACCGGG+AGG | 0.702063 | 3.4:+75078708 | None:intergenic |
| GGCTTCGTTCGAGCTCCATG+GGG | 0.728743 | 3.4:-75069645 | MS.gene074387:CDS |
| TGTGAAAACATTTAGCACTG+AGG | 0.731236 | 3.4:-75069989 | MS.gene074387:CDS |
| AACCACTGGATGAAGCACTG+GGG | 0.731676 | 3.4:-75079263 | MS.gene074387:CDS |
| TACATATCTGATGAGCAGTG+GGG | 0.756462 | 3.4:-75069448 | MS.gene074387:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 75069417 | 75086822 | 75069417 | ID=MS.gene074387 |
| chr3.4 | mRNA | 75069417 | 75086822 | 75069417 | ID=MS.gene074387.t1;Parent=MS.gene074387 |
| chr3.4 | exon | 75086714 | 75086822 | 75086714 | ID=MS.gene074387.t1.exon1;Parent=MS.gene074387.t1 |
| chr3.4 | CDS | 75086714 | 75086822 | 75086714 | ID=cds.MS.gene074387.t1;Parent=MS.gene074387.t1 |
| chr3.4 | exon | 75086466 | 75086608 | 75086466 | ID=MS.gene074387.t1.exon2;Parent=MS.gene074387.t1 |
| chr3.4 | CDS | 75086466 | 75086608 | 75086466 | ID=cds.MS.gene074387.t1;Parent=MS.gene074387.t1 |
| chr3.4 | exon | 75079257 | 75079337 | 75079257 | ID=MS.gene074387.t1.exon3;Parent=MS.gene074387.t1 |
| chr3.4 | CDS | 75079257 | 75079337 | 75079257 | ID=cds.MS.gene074387.t1;Parent=MS.gene074387.t1 |
| chr3.4 | exon | 75079018 | 75079166 | 75079018 | ID=MS.gene074387.t1.exon4;Parent=MS.gene074387.t1 |
| chr3.4 | CDS | 75079018 | 75079166 | 75079018 | ID=cds.MS.gene074387.t1;Parent=MS.gene074387.t1 |
| chr3.4 | exon | 75078854 | 75078946 | 75078854 | ID=MS.gene074387.t1.exon5;Parent=MS.gene074387.t1 |
| chr3.4 | CDS | 75078854 | 75078946 | 75078854 | ID=cds.MS.gene074387.t1;Parent=MS.gene074387.t1 |
| chr3.4 | exon | 75078650 | 75078773 | 75078650 | ID=MS.gene074387.t1.exon6;Parent=MS.gene074387.t1 |
| chr3.4 | CDS | 75078650 | 75078773 | 75078650 | ID=cds.MS.gene074387.t1;Parent=MS.gene074387.t1 |
| chr3.4 | exon | 75078450 | 75078515 | 75078450 | ID=MS.gene074387.t1.exon7;Parent=MS.gene074387.t1 |
| chr3.4 | CDS | 75078450 | 75078515 | 75078450 | ID=cds.MS.gene074387.t1;Parent=MS.gene074387.t1 |
| chr3.4 | exon | 75078247 | 75078313 | 75078247 | ID=MS.gene074387.t1.exon8;Parent=MS.gene074387.t1 |
| chr3.4 | CDS | 75078247 | 75078313 | 75078247 | ID=cds.MS.gene074387.t1;Parent=MS.gene074387.t1 |
| chr3.4 | exon | 75077940 | 75078016 | 75077940 | ID=MS.gene074387.t1.exon9;Parent=MS.gene074387.t1 |
| chr3.4 | CDS | 75077940 | 75078016 | 75077940 | ID=cds.MS.gene074387.t1;Parent=MS.gene074387.t1 |
| chr3.4 | exon | 75077610 | 75077723 | 75077610 | ID=MS.gene074387.t1.exon10;Parent=MS.gene074387.t1 |
| chr3.4 | CDS | 75077610 | 75077723 | 75077610 | ID=cds.MS.gene074387.t1;Parent=MS.gene074387.t1 |
| chr3.4 | exon | 75070193 | 75070270 | 75070193 | ID=MS.gene074387.t1.exon11;Parent=MS.gene074387.t1 |
| chr3.4 | CDS | 75070193 | 75070270 | 75070193 | ID=cds.MS.gene074387.t1;Parent=MS.gene074387.t1 |
| chr3.4 | exon | 75069958 | 75070109 | 75069958 | ID=MS.gene074387.t1.exon12;Parent=MS.gene074387.t1 |
| chr3.4 | CDS | 75069958 | 75070109 | 75069958 | ID=cds.MS.gene074387.t1;Parent=MS.gene074387.t1 |
| chr3.4 | exon | 75069804 | 75069864 | 75069804 | ID=MS.gene074387.t1.exon13;Parent=MS.gene074387.t1 |
| chr3.4 | CDS | 75069804 | 75069864 | 75069804 | ID=cds.MS.gene074387.t1;Parent=MS.gene074387.t1 |
| chr3.4 | exon | 75069603 | 75069709 | 75069603 | ID=MS.gene074387.t1.exon14;Parent=MS.gene074387.t1 |
| chr3.4 | CDS | 75069603 | 75069709 | 75069603 | ID=cds.MS.gene074387.t1;Parent=MS.gene074387.t1 |
| chr3.4 | exon | 75069417 | 75069510 | 75069417 | ID=MS.gene074387.t1.exon15;Parent=MS.gene074387.t1 |
| chr3.4 | CDS | 75069417 | 75069510 | 75069417 | ID=cds.MS.gene074387.t1;Parent=MS.gene074387.t1 |
| Gene Sequence |
| Protein sequence |
